Citrus Sinensis ID: 010272

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTPSKPQIETEADADSEQILPD
cccccccccccEEEcccHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEcEEEEccccccccccccccccccEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHccEEcccccccccccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccEEEcccccEEEEccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcHcEEEEEEcccccEcccEEEEEEEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEccccEEEcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
MLKMLLDAsggivvtndGNAILRELDVAHPAAKSMIELSrtqdeevgdgTTSVIVLAGEMLHVAEefidknyhptvICRAYNKALEDAVAVLDKiampidtnDRATMLGLVKScigtkftsQFGDLIADLAIDATTTVgvdlgqglrevDIKKYIKvekvpggqledsrvLKGVmfnkdvvapgkmrrkivnpriilldspleykkgenqtnaelvkeEDWEVLLKMEEEYIENLCMQILKfkpdlviteKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGavivnrpdelqesdvgtgaGLFEVKKIGDEFFAFIvdckdpkaCTVLLRGASKDLLNEVERNLQDAMSVARNiiknpklvpgggateLTVSATLkqksssiegiekwpYEAAAIAFEAIPRTLAQNCGINVIRTMTALqgkhangenawigidgntgaisdmKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSgikkkqapgsgqtpskpqieteadadseqilpd
MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIElsrtqdeevgDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGvdlgqglrevdikkyikvekvpggqledsrvlkgvmfnkdvvapgkmrrkivnpriilldspleykkgenqtnaelvkeedWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKAcgavivnrpdelqesdvgTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNiiknpklvpgggATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIkkkqapgsgqtpskpqieteadadseqilpd
MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTPSKPQIETEADADSEQILPD
******DASGGIVVTNDGNAILRELDVAHP*****************DGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKG***TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVS*********IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI*******************************
MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRID*************************************
MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSR********GTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK******************************
*LKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI*******************************
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MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLxxxxxxxxxxxxxxxxxxxxxPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTPSKPQIETEADADSEQILPD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q3T0K2545 T-complex protein 1 subun yes no 0.955 0.900 0.616 0.0
Q6P502545 T-complex protein 1 subun yes no 0.955 0.900 0.618 0.0
P80318545 T-complex protein 1 subun yes no 0.955 0.900 0.616 0.0
Q5NVF9545 T-complex protein 1 subun yes no 0.955 0.900 0.612 0.0
P50143547 T-complex protein 1 subun N/A no 0.939 0.882 0.634 0.0
P49368545 T-complex protein 1 subun yes no 0.955 0.900 0.612 0.0
Q4R963545 T-complex protein 1 subun N/A no 0.955 0.900 0.612 0.0
Q9LKI7558 T-complex protein 1 subun N/A no 0.941 0.867 0.596 1e-179
O00782559 T-complex protein 1 subun N/A no 0.951 0.874 0.621 1e-178
O74341528 T-complex protein 1 subun yes no 0.937 0.912 0.597 1e-176
>sp|Q3T0K2|TCPG_BOVIN T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/501 (61%), Positives = 393/501 (78%), Gaps = 10/501 (1%)

Query: 1   MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
           M+KMLLD  GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEM
Sbjct: 46  MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 105

Query: 61  LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
           L VAE F+++  HPTV+  AY KAL+D ++ L KI++P+DT++R TML ++ S I TK  
Sbjct: 106 LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVI 165

Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
           S++  L  ++A+DA  TV  +   G +E+DIKKY +VEK+PGG +EDS VL+GVM NKDV
Sbjct: 166 SRWSSLACNIALDAVKTVQFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224

Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
             P +MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+  +L+MEEEYI+ LC  I+
Sbjct: 225 THP-RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII 283

Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
           + KPD+VITEKG+SDLA HYL +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DV
Sbjct: 284 QLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDV 343

Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
           GTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ 
Sbjct: 344 GTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLL 403

Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
           +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +
Sbjct: 404 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLL 463

Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
           T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIV
Sbjct: 464 TSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 523

Query: 481 SGIKKK--------QAPGSGQ 493
           SG KKK         AP +GQ
Sbjct: 524 SGHKKKGDDQSRQGGAPDAGQ 544
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Bos taurus (taxid: 9913)
>sp|Q6P502|TCPG_RAT T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|P80318|TCPG_MOUSE T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|P50143|TCPG_XENLA T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2 Back     alignment and function description
>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4 Back     alignment and function description
>sp|Q4R963|TCPG_MACFA T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LKI7|TCPG_THAWE T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1 Back     alignment and function description
>sp|O00782|TCPG_OXYGR T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1 Back     alignment and function description
>sp|O74341|TCPG_SCHPO T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
147784740557 hypothetical protein VITISV_000290 [Viti 1.0 0.922 0.941 0.0
225463163557 PREDICTED: T-complex protein 1 subunit g 1.0 0.922 0.939 0.0
255577568554 chaperonin containing t-complex protein 0.994 0.922 0.929 0.0
449457977514 PREDICTED: LOW QUALITY PROTEIN: T-comple 0.996 0.996 0.918 0.0
356530989554 PREDICTED: T-complex protein 1 subunit g 0.994 0.922 0.920 0.0
224144426556 predicted protein [Populus trichocarpa] 0.998 0.922 0.935 0.0
356559977554 PREDICTED: T-complex protein 1 subunit g 0.994 0.922 0.920 0.0
224077652556 predicted protein [Populus trichocarpa] 0.998 0.922 0.931 0.0
225457058557 PREDICTED: T-complex protein 1 subunit g 1.0 0.922 0.920 0.0
297812853555 hypothetical protein ARALYDRAFT_489475 [ 0.996 0.922 0.926 0.0
>gi|147784740|emb|CAN74796.1| hypothetical protein VITISV_000290 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/514 (94%), Positives = 501/514 (97%)

Query: 1   MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
           MLKMLLDA GGIVVTNDGNAILRELD+AHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM
Sbjct: 44  MLKMLLDAGGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 103

Query: 61  LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
           LHVAE FIDK+YHPTVICRAYNKALEDA+AVLDKIAM ID  DR+T+LGLVKSCIGTKFT
Sbjct: 104 LHVAEAFIDKSYHPTVICRAYNKALEDAIAVLDKIAMSIDVKDRSTVLGLVKSCIGTKFT 163

Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
           SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS+VLKGVM NKDV
Sbjct: 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSKVLKGVMINKDV 223

Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
           +APGKMRRKIVNPRIILLD PLEYKKGENQTNAELVKEEDW VLLKMEEEYIE++CMQIL
Sbjct: 224 IAPGKMRRKIVNPRIILLDCPLEYKKGENQTNAELVKEEDWGVLLKMEEEYIESICMQIL 283

Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
           KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV
Sbjct: 284 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 343

Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
           GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRG SKDLLNEVERNLQDAM VARNIIK
Sbjct: 344 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGPSKDLLNEVERNLQDAMCVARNIIK 403

Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
           NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAA+AFEAIPRTLAQNCG+NVIRTM
Sbjct: 404 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAVAFEAIPRTLAQNCGVNVIRTM 463

Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
           TALQGKHANGENAW+GIDGNTGAI+DMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV
Sbjct: 464 TALQGKHANGENAWMGIDGNTGAITDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523

Query: 481 SGIKKKQAPGSGQTPSKPQIETEADADSEQILPD 514
           SGIKKKQAPG+GQ PSKP+IE E DAD+EQILP+
Sbjct: 524 SGIKKKQAPGAGQAPSKPKIEEEGDADNEQILPE 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225463163|ref|XP_002268799.1| PREDICTED: T-complex protein 1 subunit gamma [Vitis vinifera] gi|296084839|emb|CBI27721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577568|ref|XP_002529662.1| chaperonin containing t-complex protein 1, gamma subunit, tcpg, putative [Ricinus communis] gi|223530888|gb|EEF32749.1| chaperonin containing t-complex protein 1, gamma subunit, tcpg, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449457977|ref|XP_004146724.1| PREDICTED: LOW QUALITY PROTEIN: T-complex protein 1 subunit gamma-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530989|ref|XP_003534061.1| PREDICTED: T-complex protein 1 subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|224144426|ref|XP_002325286.1| predicted protein [Populus trichocarpa] gi|222862161|gb|EEE99667.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559977|ref|XP_003548272.1| PREDICTED: T-complex protein 1 subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|224077652|ref|XP_002305345.1| predicted protein [Populus trichocarpa] gi|222848309|gb|EEE85856.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225457058|ref|XP_002282991.1| PREDICTED: T-complex protein 1 subunit gamma [Vitis vinifera] gi|297733798|emb|CBI15045.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297812853|ref|XP_002874310.1| hypothetical protein ARALYDRAFT_489475 [Arabidopsis lyrata subsp. lyrata] gi|297320147|gb|EFH50569.1| hypothetical protein ARALYDRAFT_489475 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2151084555 AT5G26360 [Arabidopsis thalian 0.996 0.922 0.922 3.3e-253
ASPGD|ASPL0000038552538 AN3134 [Emericella nidulans (t 0.945 0.903 0.620 5.4e-166
UNIPROTKB|Q3T0K2545 CCT3 "T-complex protein 1 subu 0.937 0.884 0.631 3.8e-165
UNIPROTKB|G4MKN9541 MGG_06639 "T-complex protein 1 0.957 0.909 0.621 1.3e-164
UNIPROTKB|E2RB79549 CCT3 "Uncharacterized protein" 0.963 0.901 0.620 1.6e-164
RGD|735038545 Cct3 "chaperonin containing Tc 0.953 0.899 0.627 1.6e-164
MGI|MGI:104708545 Cct3 "chaperonin containing Tc 0.955 0.900 0.622 4.3e-164
UNIPROTKB|B4DUR8500 CCT3 "cDNA, FLJ78822, highly s 0.937 0.964 0.627 1.9e-163
UNIPROTKB|P49368545 CCT3 "T-complex protein 1 subu 0.937 0.884 0.627 1.9e-163
ZFIN|ZDB-GENE-020419-5543 cct3 "chaperonin containing TC 0.966 0.915 0.603 2.7e-162
TAIR|locus:2151084 AT5G26360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2438 (863.3 bits), Expect = 3.3e-253, P = 3.3e-253
 Identities = 474/514 (92%), Positives = 496/514 (96%)

Query:     1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
             MLKMLLDA GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM
Sbjct:    44 MLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 103

Query:    61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
             LHVAE F++KNYHPTVICRAY KALED++AVLDKIAM ID NDR+ +LGLVKSCIGTKFT
Sbjct:   104 LHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFT 163

Query:   121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
             SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQ EDS VLKGVMFNKDV
Sbjct:   164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFEDSEVLKGVMFNKDV 223

Query:   181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
             VAPGKM+RKIVNPRIILLD PLEYKKGENQTNAELV+EEDWEVLLK+EEEYIEN+C+QIL
Sbjct:   224 VAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELVREEDWEVLLKLEEEYIENICVQIL 283

Query:   241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
             KFKPDLVITEKGLSDLACHY SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESD+
Sbjct:   284 KFKPDLVITEKGLSDLACHYFSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDI 343

Query:   301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
             GTGAGLFEVKKIGD+FF+FIVDCK+PKACTVLLRG SKD +NEVERNLQDAMSVARNIIK
Sbjct:   344 GTGAGLFEVKKIGDDFFSFIVDCKEPKACTVLLRGPSKDFINEVERNLQDAMSVARNIIK 403

Query:   361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
             NPKLVPGGGATELTVSATLKQKS++IEGIEKWPYEAAAIAFEAIPRTLAQNCG+NVIRTM
Sbjct:   404 NPKLVPGGGATELTVSATLKQKSATIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTM 463

Query:   421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
             TALQGKHANGENAW GIDGNTGAI+DMKE KIWD+YNVKAQTFKTAIEAACMLLRIDDIV
Sbjct:   464 TALQGKHANGENAWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAACMLLRIDDIV 523

Query:   481 SGIKKKQAPGSGQTPSKPQIETEADADSEQILPD 514
             SGIKKKQAPGSG  PSKP IETE DAD+EQILPD
Sbjct:   524 SGIKKKQAPGSG--PSKPTIETEGDADNEQILPD 555
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
ASPGD|ASPL0000038552 AN3134 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0K2 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G4MKN9 MGG_06639 "T-complex protein 1 subunit gamma" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB79 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|735038 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:104708 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4DUR8 CCT3 "cDNA, FLJ78822, highly similar to T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49368 CCT3 "T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-5 cct3 "chaperonin containing TCP1, subunit 3 (gamma)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8SR76TCPG_ENCCUNo assigned EC number0.44280.91630.9075yesno
Q9LKI7TCPG_THAWENo assigned EC number0.59680.94160.8673N/Ano
Q9V2T5THSA_SULACNo assigned EC number0.36930.92600.8530yesno
O00782TCPG_OXYGRNo assigned EC number0.62140.95130.8747N/Ano
Q9HN70THSA_HALSANo assigned EC number0.33880.91820.8398yesno
Q54TH8TCPG_DICDINo assigned EC number0.57990.94350.9150yesno
P48605TCPG_DROMENo assigned EC number0.61630.94350.8915yesno
P49368TCPG_HUMANNo assigned EC number0.61270.95520.9009yesno
P48425THSB_THEACNo assigned EC number0.38250.92600.8766yesno
O24734THSA_SULTONo assigned EC number0.36320.92410.8497yesno
Q9V2S9THSA_SULSONo assigned EC number0.35530.95330.8765yesno
Q9V2Q7THS_PYRABNo assigned EC number0.39250.93190.8709yesno
Q5NVF9TCPG_PONABNo assigned EC number0.61270.95520.9009yesno
P54408TCPG_TETPYNo assigned EC number0.60480.95520.8783N/Ano
P50143TCPG_XENLANo assigned EC number0.63440.93960.8829N/Ano
O26885THSB_METTHNo assigned EC number0.39620.91430.8736yesno
O57762THS_PYRHONo assigned EC number0.39830.92800.8688yesno
P80318TCPG_MOUSENo assigned EC number0.61670.95520.9009yesno
O28821THSB_ARCFUNo assigned EC number0.39290.92600.8733yesno
O30561THS1_HALVDNo assigned EC number0.35750.91820.8428yesno
Q58405THS_METJANo assigned EC number0.39090.92600.8782yesno
Q9YDK6THSA_AERPENo assigned EC number0.38920.92600.8592yesno
Q52500THSB_PYRKONo assigned EC number0.38660.94740.8919yesno
O74341TCPG_SCHPONo assigned EC number0.59790.93770.9128yesno
Q4R963TCPG_MACFANo assigned EC number0.61270.95520.9009N/Ano
Q6P502TCPG_RATNo assigned EC number0.61870.95520.9009yesno
P50016THS_METKANo assigned EC number0.40040.92410.8715yesno
P39077TCPG_YEASTNo assigned EC number0.58620.94350.9082yesno
Q3T0K2TCPG_BOVINNo assigned EC number0.61670.95520.9009yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
  ••    0.667
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.662
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.657
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.625
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.590
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.553
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.545
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.543
GSVIVG00036385001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (489 aa)
  •••   0.510
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
  ••    0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 0.0
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-180
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-157
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-152
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-144
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-133
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-111
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-108
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-107
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-106
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-104
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-94
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 2e-92
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-83
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 3e-83
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 4e-83
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 3e-82
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 9e-81
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-78
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 9e-78
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 4e-67
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-65
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 7e-40
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 4e-08
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 6e-06
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 8e-06
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-05
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 4e-04
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 6e-04
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.001
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 0.004
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information 
 Score =  877 bits (2267), Expect = 0.0
 Identities = 346/486 (71%), Positives = 412/486 (84%), Gaps = 1/486 (0%)

Query: 1   MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
           MLKMLLD  GGIV+TNDGNAILRE+DVAHPAAKSMIELSRTQDEEVGDGTTSVI+LAGEM
Sbjct: 41  MLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEM 100

Query: 61  LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
           L VAE F+++N HPT+I RAY KAL+DA++VL++I++P+D ND A ML L++SCIGTKF 
Sbjct: 101 LSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFV 160

Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
           S++ DL+ DLA+DA  TV  DLG G +E+DIK+Y KVEK+PGG +EDS VLKGVM NKDV
Sbjct: 161 SRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDV 220

Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
             P KMRR I NPRI+LLD PLEYKKGE+QTN E++KEEDW  +L+MEEEY++ +C  I+
Sbjct: 221 THP-KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDII 279

Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
             KPDLVITEKG+SDLA HYL KA +SAIRR+RKTDNNRIA+ACGA IVNRP+EL+ESDV
Sbjct: 280 AVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDV 339

Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
           GTG GLFEVKKIGDE+F F  +CKDPKACT+LLRGASKD+LNE+ERNLQDAM+VARN++ 
Sbjct: 340 GTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLL 399

Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
            PKL+PGGGATE+ VS  L +K+S +EG+++WPY A A A E IPRTLAQNCG+NVIRT+
Sbjct: 400 EPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTL 459

Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
           T L+ KHA   N   GIDG TG I DMKE+ IW+   VK QT+KTAIE+ACMLLRIDDIV
Sbjct: 460 TELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519

Query: 481 SGIKKK 486
           SG+KKK
Sbjct: 520 SGVKKK 525

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.91
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information 
Probab=100.00  E-value=4.3e-100  Score=814.56  Aligned_cols=483  Identities=71%  Similarity=1.129  Sum_probs=463.3

Q ss_pred             CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272            1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA   80 (514)
Q Consensus         1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g   80 (514)
                      |||||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||..|++|
T Consensus        41 ~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g  120 (525)
T TIGR02344        41 MLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRA  120 (525)
T ss_pred             CCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272           81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV  160 (514)
Q Consensus        81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i  160 (514)
                      |+.|++.++++|++++++++..+.+.|.++++|+++||+.++|.+.+++++++|+..++++..++...+|+..+|+|+++
T Consensus       121 ~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki  200 (525)
T TIGR02344       121 YKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKI  200 (525)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEe
Confidence            99999999999999999998777888999999999999999999999999999999998642122346787777999999


Q ss_pred             cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272          161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL  240 (514)
Q Consensus       161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~  240 (514)
                      +|++++||++++|++|++++.++ .|+++++||||++++++|++.+++.++++.+.+++++.+++++|++++++++++|.
T Consensus       201 ~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~  279 (525)
T TIGR02344       201 PGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDII  279 (525)
T ss_pred             cCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272          241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI  320 (514)
Q Consensus       241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l  320 (514)
                      +.|++||++++++++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+.|+.|+++++|+++|++|
T Consensus       280 ~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~  359 (525)
T TIGR02344       280 AVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFF  359 (525)
T ss_pred             hcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999997699999999999999999


Q ss_pred             EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272          321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA  400 (514)
Q Consensus       321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a  400 (514)
                      ++|.+++.|||+|||+|+.+++|+||+++||+++++++++++++|||||++|++||.+|+++++..++.+++++++|++|
T Consensus       360 ~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~a  439 (525)
T TIGR02344       360 TECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADA  439 (525)
T ss_pred             EcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272          401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV  480 (514)
Q Consensus       401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii  480 (514)
                      |+.||++||+|||+|+.+++.+|+..|.++++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|
T Consensus       440 l~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii  519 (525)
T TIGR02344       440 LEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV  519 (525)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            99999999999999999999999999987644789999999999999999999999999999999999999999999999


Q ss_pred             cCCc
Q 010272          481 SGIK  484 (514)
Q Consensus       481 ~~~~  484 (514)
                      ...|
T Consensus       520 ~~~~  523 (525)
T TIGR02344       520 SGVK  523 (525)
T ss_pred             hcCC
Confidence            7765

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-136
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-93
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-92
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-92
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 9e-90
3izh_A513 Mm-Cpn D386a With Atp Length = 513 1e-89
1a6d_B543 Thermosome From T. Acidophilum Length = 543 1e-89
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 3e-89
3izi_A513 Mm-Cpn Rls With Atp Length = 513 7e-89
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 5e-88
1a6d_A545 Thermosome From T. Acidophilum Length = 545 3e-87
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 7e-86
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 8e-86
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 4e-85
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 6e-85
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-82
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-74
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-71
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-70
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-70
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-70
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-60
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-60
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-59
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-56
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-52
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-51
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-51
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-48
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-46
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-44
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 6e-24
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 2e-18
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-06
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-06
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 9e-05
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-04
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-04
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-04
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-04
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-04
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-04
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-04
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 2e-04
1oel_A547 Conformational Variability In The Refined Structure 2e-04
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 2e-04
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 2e-04
1ss8_A524 Groel Length = 524 2e-04
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-04
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-04
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/484 (62%), Positives = 386/484 (79%), Gaps = 2/484 (0%)
Query: 1   MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
           M+KMLLD  GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEM
Sbjct: 34  MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 93
Query: 61  LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
           L VAE F+++  HPTV+  AY KAL+D ++ L KI++P+DT++R TML ++ S I TK  
Sbjct: 94  LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVI 153
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
           S++  L  ++A+DA  TV  +   G +E+DIKKY +VEK+PGG +EDS VL+GVM NKDV
Sbjct: 154 SRWSSLACNIALDAVKTVQFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
             P +MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+  +L+MEEEYI+ LC  I+
Sbjct: 213 THP-RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII 271
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
           + KPD+VITEKG+SDLA HYL +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DV
Sbjct: 272 QLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDV 331
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
           GTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ 
Sbjct: 332 GTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLL 391
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
           +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +
Sbjct: 392 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLL 451
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
           T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIV
Sbjct: 452 TSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511
Query: 481 SGIK 484
           SG K
Sbjct: 512 SGHK 515
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-81
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 1e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 7e-04
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
 Score =  698 bits (1805), Expect = 0.0
 Identities = 303/484 (62%), Positives = 385/484 (79%), Gaps = 2/484 (0%)

Query: 1   MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
           M+KMLLD  GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEM
Sbjct: 34  MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 93

Query: 61  LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
           L VAE F+++  HPTV+  AY KAL+D ++ L KI++P+DT++R TML ++ S I TK  
Sbjct: 94  LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVI 153

Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
           S++  L  ++A+DA  TV  +   G +E+DIKKY +VEK+PGG +EDS VL+GVM NKDV
Sbjct: 154 SRWSSLACNIALDAVKTVQFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 212

Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
             P  MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+  +L+MEEEYI+ LC  I+
Sbjct: 213 THPR-MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII 271

Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
           + KPD+VITEKG+SDLA HYL +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DV
Sbjct: 272 QLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDV 331

Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
           GTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ 
Sbjct: 332 GTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLL 391

Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
           +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +
Sbjct: 392 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLL 451

Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
           T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIV
Sbjct: 452 TSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511

Query: 481 SGIK 484
           SG K
Sbjct: 512 SGHK 515
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.98
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.3
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.23
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.2
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=8.3e-106  Score=854.47  Aligned_cols=480  Identities=32%  Similarity=0.483  Sum_probs=460.0

Q ss_pred             CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272            1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA   80 (514)
Q Consensus         1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g   80 (514)
                      |||||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||||||+++|+++||+++.+++++|+||..|++|
T Consensus        35 ~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G  114 (529)
T 3iyg_A           35 LDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG  114 (529)
T ss_pred             CeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272           81 YNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK  159 (514)
Q Consensus        81 ~~~a~~~~l~~L~~-~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~  159 (514)
                      |++|++.++++|++ ++++++..+++.|.++++|+++||+.++++++|++++++|+..+++..++|..++|++ +|+|++
T Consensus       115 ~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~-~I~I~k  193 (529)
T 3iyg_A          115 YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN-SINVLK  193 (529)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccc-eEEEEE
Confidence            99999999999998 9999887678999999999999999999999999999999999974323454567776 599999


Q ss_pred             ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272          160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI  239 (514)
Q Consensus       160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i  239 (514)
                      +.|+++.||++++|++|++++.++ .||+.++||||++++++|++++++.+.++.+++++++..+.+.|+++++.++++|
T Consensus       194 ~~G~~~~ds~lv~G~v~dk~~~~~-~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI  272 (529)
T 3iyg_A          194 AHGRSQMESMLINGYALNCVVGSQ-GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKI  272 (529)
T ss_pred             ecCCCccceEEEeeeEEecCcccc-cCCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCC------CCccCCccceEEEEEEC
Q 010272          240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQ------ESDVGTGAGLFEVKKIG  313 (514)
Q Consensus       240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~------~~~lG~~~~~v~~~~ig  313 (514)
                      ++.|+||||++++|++.+++||.++||++++++++++|+|||++|||++++++++++      +.++|+ |+.|+++++|
T Consensus       273 ~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~-a~~v~~~~ig  351 (529)
T 3iyg_A          273 LATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQ-AEEVVQERIC  351 (529)
T ss_pred             HhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCcc-ceEEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999987765      567999 9999999999


Q ss_pred             CeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272          314 DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP  393 (514)
Q Consensus       314 ~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~  393 (514)
                      +++|++|++|++++.|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++++.+|++++.+.++++|++
T Consensus       352 ~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~  431 (529)
T 3iyg_A          352 DDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA  431 (529)
T ss_pred             CceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCC-------CceEEEeCCCCccccccccccccchHHHHHHHHHH
Q 010272          394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE-------NAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTA  466 (514)
Q Consensus       394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~-------~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A  466 (514)
                      +++||+||+.||++||+|||+|+.+++.+|++.|..+.       ..++|||+.+|++.||++.|||||+.||+++|++|
T Consensus       432 i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A  511 (529)
T 3iyg_A          432 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFA  511 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHHHHHH
Confidence            99999999999999999999999999999999997653       15799999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhhhcCC
Q 010272          467 IEAACMLLRIDDIVSGI  483 (514)
Q Consensus       467 ~e~a~~iL~id~ii~~~  483 (514)
                      +|+|++|||||++|...
T Consensus       512 ~e~a~~iL~iD~ii~~~  528 (529)
T 3iyg_A          512 TEAAITILRIDDLIKLH  528 (529)
T ss_pred             HHHHHHHHhHHhhhcCC
Confidence            99999999999999764
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 6e-51
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 2e-43
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 4e-42
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 2e-40
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 1e-28
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-22
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-25
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-18
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 7e-20
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 4e-18
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-17
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 7e-17
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 6e-17
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-15
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 9e-14
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 9e-13
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-06
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 4e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-07
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  169 bits (429), Expect = 6e-51
 Identities = 120/169 (71%), Positives = 143/169 (84%), Gaps = 1/169 (0%)

Query: 167 DSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLK 226
           DS VL+GVM NKDV  P  MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+  +L+
Sbjct: 1   DSCVLRGVMINKDVTHPR-MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQ 59

Query: 227 MEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 286
           MEEEYI  LC  I++ KPD+VITEKG+SDLA HYL +A V+AIRR+RKTDNNRIA+ACGA
Sbjct: 60  MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 119

Query: 287 VIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRG 335
            IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRG
Sbjct: 120 RIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.94
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.93
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.91
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.55
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.53
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.45
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.25
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.18
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.14
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.12
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 97.88
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 96.92
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.67
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.22
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 91.62
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 85.83
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=4.4e-45  Score=347.47  Aligned_cols=217  Identities=44%  Similarity=0.676  Sum_probs=204.7

Q ss_pred             CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272            1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA   80 (514)
Q Consensus         1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g   80 (514)
                      |+|||+++.|++++||||+||++++.++||+++++++++++|++++||||||+++|+++||+++.+++..|+||..|++|
T Consensus        27 ~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~vl~~~ll~~~~~~i~~G~~p~~I~~g  106 (243)
T d1a6db1          27 MDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEG  106 (243)
T ss_dssp             CCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272           81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV  160 (514)
Q Consensus        81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i  160 (514)
                      |+.+++.+++.|++++.++.                                                        +.  
T Consensus       107 ~~~a~~~~~~~L~~~a~~v~--------------------------------------------------------~~--  128 (243)
T d1a6db1         107 YRMASEEAKRVIDEISTKIA--------------------------------------------------------YA--  128 (243)
T ss_dssp             HHHHHHHHHHHHHHHCEECE--------------------------------------------------------EE--
T ss_pred             HHHHHHHHHHHHHhhccccc--------------------------------------------------------cc--
Confidence            99999999888866543321                                                        10  


Q ss_pred             cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272          161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL  240 (514)
Q Consensus       161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~  240 (514)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272          241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI  320 (514)
Q Consensus       241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l  320 (514)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272          321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA  400 (514)
Q Consensus       321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a  400 (514)
                                                                   ||||++|+.+|..|.+++++.++.+|+++++|++|
T Consensus       129 ---------------------------------------------~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~A  163 (243)
T d1a6db1         129 ---------------------------------------------AGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADA  163 (243)
T ss_dssp             ---------------------------------------------ETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             ---------------------------------------------cCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence                                                         06999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272          401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV  480 (514)
Q Consensus       401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii  480 (514)
                      |+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|++.||.+.|||||+.||+++|+.|+|+|++|||||+||
T Consensus       164 le~ip~~LaeNaG~d~~~~i~~l~~~h~~~~-~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~ii  242 (243)
T d1a6db1         164 IEEIPRALAENAGLDPIDILLKLRAEHAKGN-KTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI  242 (243)
T ss_dssp             HTHHHHHHHHHHTCCHHHHHHHHHHHHHTTC-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             hhccCccccccCCCChhHHHHHHHHHHhCCC-CceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999998876 789999999999999999999999999999999999999999999987


Q ss_pred             c
Q 010272          481 S  481 (514)
Q Consensus       481 ~  481 (514)
                      .
T Consensus       243 s  243 (243)
T d1a6db1         243 A  243 (243)
T ss_dssp             C
T ss_pred             C
Confidence            3
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure