Citrus Sinensis ID: 010273
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WUU6 | 526 | Probable polyol transport | yes | no | 0.978 | 0.956 | 0.726 | 0.0 | |
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | no | no | 0.929 | 0.886 | 0.496 | 1e-135 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.920 | 0.925 | 0.478 | 1e-129 | |
| Q9XIH6 | 511 | Putative polyol transport | no | no | 0.920 | 0.925 | 0.472 | 1e-127 | |
| Q8GXR2 | 493 | Probable polyol transport | no | no | 0.908 | 0.947 | 0.477 | 1e-126 | |
| Q9ZNS0 | 508 | Probable polyol transport | no | no | 0.892 | 0.903 | 0.503 | 1e-126 | |
| P46333 | 461 | Probable metabolite trans | yes | no | 0.836 | 0.932 | 0.358 | 1e-71 | |
| C0SPB2 | 457 | Putative metabolite trans | no | no | 0.840 | 0.945 | 0.349 | 2e-71 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.861 | 0.969 | 0.335 | 1e-68 | |
| Q8VZR6 | 509 | Inositol transporter 1 OS | no | no | 0.881 | 0.889 | 0.364 | 2e-67 |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/512 (72%), Positives = 422/512 (82%), Gaps = 9/512 (1%)
Query: 3 VQENGNKYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDV 62
V NKY+RMD+ E N E ++ TRKYV+ACAFFASLN+VLLGYDV
Sbjct: 21 VGNKKNKYQRMDSDAEESQN-------HREAEARNSRTRKYVMACAFFASLNNVLLGYDV 73
Query: 63 GVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122
GVMSGA++FI++DLKITEVQ EVL+G LSIISLFGSLAGG+TSD +GRKWT+ALAA+VFQ
Sbjct: 74 GVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQ 133
Query: 123 AGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLG 182
GAA+M +APSF VL+IGR LAG+GIG GVMIAP+YIAEISP++ARG TSFPEIFINLG
Sbjct: 134 TGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLG 193
Query: 183 ILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLV 242
ILLGY+SNYAFS L HI+WR+ML VGILPSVFI AL VIPESPRWLVM+GR+D AR V
Sbjct: 194 ILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREV 253
Query: 243 LSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQ 302
L KTNE E EERLAEIQ+AA + E +E++ VWRE+++PSP VR+MLI G GIQCFQ
Sbjct: 254 LMKTNERDDEAEERLAEIQLAAA--HTEGSEDRPVWRELLSPSPVVRKMLIVGFGIQCFQ 311
Query: 303 QITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV 362
QITGIDATVYYSP I K AGI+ +LLAATVAVG TKT+FIL A LID VGRKPLLYV
Sbjct: 312 QITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLLYV 371
Query: 363 STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL 422
STIGMT+CL LS +LTFLG G LGI LA+L VCGNVAFFS+G+GPVCWVL+SEIFPLRL
Sbjct: 372 STIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPLRL 431
Query: 423 RAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGK 482
RAQASALGAVG+RV SG +AMSFLSVS AITVGGTFFVFSL+SALSV FVY VPET GK
Sbjct: 432 RAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVYVLVPETSGK 491
Query: 483 SLEQIEMLFQDERERPVGEVELGDTERLVENR 514
SLEQIE++FQ ER GEVELGD ERLV
Sbjct: 492 SLEQIELMFQGGLERKDGEVELGDAERLVRKE 523
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/493 (49%), Positives = 340/493 (68%), Gaps = 15/493 (3%)
Query: 36 KSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISL 95
K Y ACA AS+ S+LLGYD+GVMSGA+I+IK DLKI ++Q +L G L+I SL
Sbjct: 28 KPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSL 87
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIA 155
GS A G+TSD +GR++TI LA +F AGA +M L+P++A L+ GR +AG+G+G+ +MIA
Sbjct: 88 IGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIA 147
Query: 156 PLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215
P+Y AE+SP+ +RG L SFPE+FIN GI+LGY+SN AFS LP + WR+MLG+G +PSV
Sbjct: 148 PVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVI 207
Query: 216 IALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAG-----SDN-- 268
+A+ + +PESPRWLVMQGR+ +A+ VL KT++S E RL +I+ AAG D+
Sbjct: 208 LAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVV 267
Query: 269 --AEKNEE-KAVWRE-IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIK 324
+ +N + VWRE +I P+PAVRR++I GI FQQ +GIDA V +SP IFK AG+K
Sbjct: 268 QVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLK 327
Query: 325 GNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG 384
+++ L ATVAVG KT FIL+A L+D++GR+PLL S GM + L +L SLT +
Sbjct: 328 TDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQS 387
Query: 385 Q----LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440
+ + +AI +V VA FS+G GP+ WV SSEIFPLRLR+Q S++G V +RV+SG
Sbjct: 388 EKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGV 447
Query: 441 IAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDERERPVG 500
I++SFL +S A+T GG F++F I+ ++ F Y +PET+G+ LE ++ LF R R
Sbjct: 448 ISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELFSGFRWRDSK 507
Query: 501 EVELGDTERLVEN 513
G+ E+ V N
Sbjct: 508 SKPKGNPEKTVPN 520
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Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 340/495 (68%), Gaps = 22/495 (4%)
Query: 13 MDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFI 72
M+++G E+ + +S G+ +Y ACA AS+ S++LGYD+GVMSGA IFI
Sbjct: 1 MNSSGVEQGVVIAESEPPR------GNRSRYAFACAILASMTSIILGYDIGVMSGASIFI 54
Query: 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP 132
K+DLK+++VQ E+L+GIL+I SL GS A G+TSD LGR++TI LA F GA +M A
Sbjct: 55 KDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFAT 114
Query: 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192
++ +++GR +AG+G+G+ +MIAP+Y AE++P+ +RG LTSFPEIFIN+GILLGY+SNY
Sbjct: 115 NYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYF 174
Query: 193 FSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKE 252
FS+LP H+ WR MLGVG +PSVF+A+ + +PESPRWLV+QGR+ +A VL KT+ + +E
Sbjct: 175 FSKLPEHLGWRFMLGVGAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEE 234
Query: 253 VEERLAEIQVAAG-----SDNA-----EKNEEKAVWRE-IINPSPAVRRMLITGCGIQCF 301
RL +I+ A G +D+ +K+ K VW++ ++ P+P+VR +LI GI
Sbjct: 235 AISRLDDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFA 294
Query: 302 QQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361
QQ +GIDA V YSPTIF AG+K N+ L ATVAVG KT+FI++ ++D+ GR+ LL
Sbjct: 295 QQASGIDAVVLYSPTIFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLL 354
Query: 362 VSTIGMTICLLSLSLSLTFLGNG-----QLGIALAILSVCGNVAFFSVGIGPVCWVLSSE 416
S GM + L +L SLT + + I LA+ +V VA FS+G GPV WV SE
Sbjct: 355 TSMGGMFLSLTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSE 414
Query: 417 IFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476
IFP+RLRAQ ++LG + +R+ SG I M+FLS+S +T+GG F +F+ ++A + F + +
Sbjct: 415 IFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFL 474
Query: 477 PETKGKSLEQIEMLF 491
PET+G LE++E LF
Sbjct: 475 PETRGIPLEEMETLF 489
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH6|PLT2_ARATH Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/495 (47%), Positives = 336/495 (67%), Gaps = 22/495 (4%)
Query: 13 MDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFI 72
M ++G E + +S G+ ++ ACA AS+ S++LGYD+GVMSGA IFI
Sbjct: 1 MSSSGEERGVVVAESEPPR------GNRSRFAFACAILASMTSIILGYDIGVMSGAAIFI 54
Query: 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP 132
K+DLK+++VQ E+L+GIL+I SL GS A G+TSD +GR++TI LA F GA +M A
Sbjct: 55 KDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFAT 114
Query: 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192
++ +++GR +AG+G+G+ +MIAP+Y E++P+ +RG L+SFPEIFIN+GILLGY+SNY
Sbjct: 115 NYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYF 174
Query: 193 FSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKE 252
F++LP HI WR MLG+G +PSVF+A+ + +PESPRWLVMQGR+ +A VL KT+ + +E
Sbjct: 175 FAKLPEHIGWRFMLGIGAVPSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEE 234
Query: 253 VEERLAEIQVAAG-----SDNA-----EKNEEKAVWRE-IINPSPAVRRMLITGCGIQCF 301
RL +I+ A G +D+ +K+ K VW++ ++ P+P+VR +LI GI
Sbjct: 235 AISRLNDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFS 294
Query: 302 QQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361
QQ +GIDA V YSPTIF AG+K N+ L ATVAVG KT+FI++ L+D+ GR+ LL
Sbjct: 295 QQASGIDAVVLYSPTIFSRAGLKSKNDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLL 354
Query: 362 VSTIGMTICLLSLSLSLTFLGNG-----QLGIALAILSVCGNVAFFSVGIGPVCWVLSSE 416
S GM L +L SLT + + I LA+ +V VA FS+G GPV WV +SE
Sbjct: 355 TSMGGMFFSLTALGTSLTVIDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASE 414
Query: 417 IFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476
IFP+RLRAQ ++LG + +R+ SG I M+FLS+S +T+GG F +F+ ++ + F + +
Sbjct: 415 IFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFL 474
Query: 477 PETKGKSLEQIEMLF 491
PET+G LE+IE LF
Sbjct: 475 PETRGVPLEEIESLF 489
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/482 (47%), Positives = 326/482 (67%), Gaps = 15/482 (3%)
Query: 35 DKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIIS 94
+K ++ L CA AS+ S++ GYD GVMSGA++FI+EDLK +VQ EVL GIL++ +
Sbjct: 8 EKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCA 67
Query: 95 LFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMI 154
L GSL G+TSD++GR++TI LA+I+F G+ +M P++ VL+ GR AG+G+GF +M+
Sbjct: 68 LVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMV 127
Query: 155 APLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSV 214
AP+Y AEI+ + RG L S P + I++GILLGYI NY FS+LP HI WR+MLG+ +PS+
Sbjct: 128 APVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSL 187
Query: 215 FIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD------- 267
+A + +PESPRWL+MQGR+ E + +L + S +E E R +I+ AAG D
Sbjct: 188 VLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDV 247
Query: 268 ---NAEKNEEKAVWRE-IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGI 323
+K + VW+E I+ P+PAVRR+L+T GI FQ +GI+A + Y P IFK AGI
Sbjct: 248 VKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAGI 307
Query: 324 KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGN 383
++L T+ VG KT FI A +L+DKVGR+ LL S GM I L L LT N
Sbjct: 308 TTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFGLTMAQN 367
Query: 384 --GQLGIA--LAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSG 439
G+L A L+I++ VAFFS+G+GP+ WV SSE+FPL+LRAQ ++LG +RV +
Sbjct: 368 AGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMNA 427
Query: 440 AIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDERERPV 499
++MSFLS++ AIT GG FF+F+ ++A++ F + +PETKGKSLE+IE LFQ + ++
Sbjct: 428 TVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQRDGDKVR 487
Query: 500 GE 501
GE
Sbjct: 488 GE 489
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/473 (50%), Positives = 323/473 (68%), Gaps = 14/473 (2%)
Query: 33 GFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSI 92
G D + K+ CA AS+ S++ GYD GVMSGA IFI++DLKI + Q EVL GIL++
Sbjct: 11 GSDPNPHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNL 70
Query: 93 ISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGV 152
+L GSL GKTSDV+GR++TIAL+A++F G+ +M P++ VL++GR +AGVG+GF +
Sbjct: 71 CALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFAL 130
Query: 153 MIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212
MIAP+Y AEIS + RG LTS PE+ I+LGILLGY+SNY F +L + WR+MLG+ P
Sbjct: 131 MIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFP 190
Query: 213 SVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAE-- 270
S+ +A + +PESPRWLVMQGR++EA+ ++ + + +E EER +I AA D E
Sbjct: 191 SLILAFGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIK 250
Query: 271 --------KNEEKAVWRE-IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA 321
KN K+VWRE +I P PAVR +LI GI F+ TGI+A V YSP IFK A
Sbjct: 251 EVGGGVKKKNHGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKA 310
Query: 322 GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTF- 380
G+ ++LL ATV VG TK FI+IA L+DKVGR+ LL ST GM L SL++SLT
Sbjct: 311 GVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAVSLTMV 370
Query: 381 --LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSS 438
G ++L+I+S VAFFS+G+GP+ WV SSEIFPLRLRAQ +++G +R+ +
Sbjct: 371 QRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMN 430
Query: 439 GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLF 491
++MSFLS++ AIT GG FFVF+ I+ + F + +PETKG LE++E LF
Sbjct: 431 ATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLF 483
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/455 (35%), Positives = 261/455 (57%), Gaps = 25/455 (5%)
Query: 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGS 98
TRKY++ FF +L +L GYD GV+SGA++FI D+ +T + + ++V +L + ++FGS
Sbjct: 4 DTRKYMIY--FFGALGGLLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAIFGS 61
Query: 99 LAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLY 158
G SD GR+ + + +I+F GA + + +LI R++ G+ +G + P+Y
Sbjct: 62 ALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVY 121
Query: 159 IAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL 218
++E++P+ RG+L + + I GILL YI NY F+ A WR M+G+ +P+V + +
Sbjct: 122 LSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA---WRWMVGLAAVPAVLLLI 178
Query: 219 ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE---- 274
+ +PESPRWLV +G +EAR +++ T++ K++E LAE++ AEK E
Sbjct: 179 GIAFMPESPRWLVKRGSEEEARRIMNITHDP-KDIEMELAEMK----QGEAEKKETTLGV 233
Query: 275 -KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAAT 333
KA W +R ML+ G G+ FQQ GI+ +YY+PTIF AG+ G + T
Sbjct: 234 LKAKW---------IRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGL-GTSASALGT 283
Query: 334 VAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAIL 393
+ +G I + A+ILID+VGRK LL ++G+T+ L +LS L LG + ++
Sbjct: 284 MGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVV 343
Query: 394 SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453
+ + F+ GPV WVL E+FP + R A+ + ++ +++ F + A+
Sbjct: 344 FLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMG 403
Query: 454 VGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIE 488
+ F VFS+I LS F + VPETKGKSLE+IE
Sbjct: 404 IAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIE 438
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 255/449 (56%), Gaps = 17/449 (3%)
Query: 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL 108
FF +L L GYD GV+SGAI+F+K++L + + ++V L + ++ GS A GK +D
Sbjct: 11 FFGALGGALYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRF 70
Query: 109 GRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIAR 168
GRK I AA++F G + LAP+ V+++ R++ G+ +G I PLY++E++P R
Sbjct: 71 GRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKR 130
Query: 169 GSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPR 228
G+L+S ++ I +GILL YI NY F+ A WR MLG+ +PS+ + + + +PESPR
Sbjct: 131 GALSSLNQLMITVGILLSYIVNYIFADAEA---WRWMLGLAAVPSLLLLIGILFMPESPR 187
Query: 229 WLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288
WL G +A+ +L K K++++ + +I+ AEK +E + +E+ +P V
Sbjct: 188 WLFTNGEESKAKKILEKL-RGTKDIDQEIHDIK------EAEKQDEGGL-KELFDPW--V 237
Query: 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAI 348
R LI G G+ QQ G + +YY+P F G GN+ + TV +G + L+AI
Sbjct: 238 RPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGIGTVNVLMTLVAI 296
Query: 349 ILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGP 408
+IDK+GRKPLL GM I L+ L+L F N ++ + + F+V GP
Sbjct: 297 KIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGP 356
Query: 409 VCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468
V WV+ E+FPL +R + + + V + +++++ + AI + F +++ I ++
Sbjct: 357 VVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMA 416
Query: 469 VAFVYKCVPETKGKSLEQIEMLFQDERER 497
FV V ETKG+SLE+IE QD R++
Sbjct: 417 FLFVRFKVTETKGRSLEEIE---QDLRDK 442
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 253/456 (55%), Gaps = 13/456 (2%)
Query: 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL 108
FF +L +L GYD GV+SGAI+FI++ + + QQ +V + + ++ G+ G +SD
Sbjct: 11 FFGALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRF 70
Query: 109 GRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIAR 168
GR+ + L+AI+F GA +P F LII R++ G+ +G + P Y+AE++PS R
Sbjct: 71 GRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKR 130
Query: 169 GSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPR 228
G+++S ++ + GILL YI+NY+FS + WR MLG +P+ + L ++PESPR
Sbjct: 131 GTVSSLFQLMVMTGILLAYITNYSFSGF--YTGWRWMLGFAAIPAALLFLGGLILPESPR 188
Query: 229 WLVMQGRIDEARLVLSKTNESVK-EVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287
+LV G +DEAR VL N+ + V + + +IQ +A W E+
Sbjct: 189 FLVKSGHLDEARHVLDTMNKHDQVAVNKEINDIQESA-------KIVSGGWSELFG--KM 239
Query: 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347
VR LI G G+ FQQ+ G + +YY+PTIF G G + L A + +G I IA
Sbjct: 240 VRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGF-GVSAALLAHIGIGIFNVIVTAIA 298
Query: 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407
+ ++DK+ RK ++ + +GM I L +S+ + F G Q ++++++ +AFFS G
Sbjct: 299 VAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALTVYIAFFSATWG 358
Query: 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467
PV WV+ E+FPL +R ++ +V + ++ ++++F S+ G F + ++
Sbjct: 359 PVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGSLFIGYGILCFA 418
Query: 468 SVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVE 503
S+ FV K V ET+ +SLE IE + + E+
Sbjct: 419 SIWFVQKKVFETRNRSLEDIEATLRAKTGEDAAELS 454
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/469 (36%), Positives = 261/469 (55%), Gaps = 16/469 (3%)
Query: 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQ---QEVLVGILSIISLFG 97
Y+L A + +L GYD GV+SGA+++IK+D ++ + QE +V + + ++ G
Sbjct: 28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIG 87
Query: 98 SLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPL 157
+ AGG +D GRK A +VF AGA +M AP VLI GRLL G+G+G + AP+
Sbjct: 88 AAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPV 147
Query: 158 YIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIA 217
YIAE SPS RG L S + I G L Y+ N AF+++P WR MLGV +P+V
Sbjct: 148 YIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPG--TWRWMLGVSGVPAVIQF 205
Query: 218 LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAV 277
+ + +PESPRWL M+ R EA VL++T + + +E+ EI + ++ EK ++ V
Sbjct: 206 ILMLFMPESPRWLFMKNRKAEAIQVLARTYD-ISRLED---EIDHLSAAEEEEKQRKRTV 261
Query: 278 WREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVG 337
+ S +R + G G+Q FQQ TGI+ +YYSPTI + AG N L ++ V
Sbjct: 262 GYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVA 321
Query: 338 FTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSL----TFLGNGQLGIALAIL 393
++ I ID GRK L S G+ I LL LS+S +G L LA+L
Sbjct: 322 AMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVL 381
Query: 394 SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453
+ + FF+ G+GPV W ++SEI+P + R + A + +S+ +A +FL+++ A
Sbjct: 382 GLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAG 441
Query: 454 VGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEV 502
G TF + + I+ L+V FV VPET+G + ++E ++ +ER G +
Sbjct: 442 TGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIW---KERAYGNI 487
|
Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| 225446940 | 526 | PREDICTED: probable polyol transporter 4 | 0.990 | 0.967 | 0.755 | 0.0 | |
| 147819414 | 526 | hypothetical protein VITISV_017987 [Viti | 0.990 | 0.967 | 0.753 | 0.0 | |
| 255555983 | 524 | sugar transporter, putative [Ricinus com | 0.998 | 0.979 | 0.759 | 0.0 | |
| 310877838 | 522 | putative polyol/monosaccharide transport | 0.988 | 0.973 | 0.773 | 0.0 | |
| 357446545 | 523 | hypothetical protein MTR_2g013310 [Medic | 0.976 | 0.959 | 0.747 | 0.0 | |
| 356549365 | 524 | PREDICTED: probable polyol transporter 4 | 0.982 | 0.963 | 0.746 | 0.0 | |
| 356555132 | 523 | PREDICTED: probable polyol transporter 4 | 0.976 | 0.959 | 0.750 | 0.0 | |
| 224126709 | 499 | predicted protein [Populus trichocarpa] | 0.970 | 1.0 | 0.754 | 0.0 | |
| 255553811 | 525 | sugar transporter, putative [Ricinus com | 0.994 | 0.973 | 0.733 | 0.0 | |
| 449444348 | 527 | PREDICTED: probable polyol transporter 4 | 0.972 | 0.948 | 0.759 | 0.0 |
| >gi|225446940|ref|XP_002263849.1| PREDICTED: probable polyol transporter 4 [Vitis vinifera] gi|310877844|gb|ADP37153.1| putative polyol/monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/528 (75%), Positives = 453/528 (85%), Gaps = 19/528 (3%)
Query: 1 MGVQENGN--------------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLA 46
+GVQENGN KYRRMD+ EED++ Q S ST+KYV A
Sbjct: 4 VGVQENGNGEMGLSGVPLGSKNKYRRMDSELTEEDDA-----SQSHHHHVSNSTKKYVFA 58
Query: 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD 106
CA FASLNSVLLGYDVGVMSGAIIFI+EDLKITEVQ+EVLVG LSI+SL GSLAGG+TSD
Sbjct: 59 CAVFASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQEEVLVGSLSIVSLLGSLAGGRTSD 118
Query: 107 VLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166
V+GRKWT+ LAA++FQ GAAIMT APSF +L++GRLLAGVGIGFGVMIAP+YIAEISP++
Sbjct: 119 VIGRKWTMGLAAVIFQTGAAIMTFAPSFQILMVGRLLAGVGIGFGVMIAPVYIAEISPTV 178
Query: 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPES 226
ARG+LTSFPEIFINLGILLGYISNYAFS P H NWR+ML VGILPSVFI ALF+IPES
Sbjct: 179 ARGALTSFPEIFINLGILLGYISNYAFSSFPVHTNWRIMLAVGILPSVFIGFALFIIPES 238
Query: 227 PRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286
PRWLVM+ R++EAR VL KTNE+ EVEERLAEIQ+AAG+ NAEK+EEKAVWRE++ PSP
Sbjct: 239 PRWLVMKNRVEEARSVLLKTNENESEVEERLAEIQLAAGTGNAEKHEEKAVWRELLKPSP 298
Query: 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILI 346
++RRML+TG GIQCFQQITGIDATVYYSP IFKGAGI+GN+ LLAATVAVG TKT+FIL+
Sbjct: 299 SLRRMLVTGFGIQCFQQITGIDATVYYSPEIFKGAGIEGNSNLLAATVAVGITKTVFILV 358
Query: 347 AIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGI 406
AI LIDK+GRKPLLY+STIGMT+CL SL +LTFLG+G +GIALA+LSVCGNVAFFSVGI
Sbjct: 359 AIFLIDKLGRKPLLYISTIGMTVCLFSLGFTLTFLGSGNVGIALAVLSVCGNVAFFSVGI 418
Query: 407 GPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466
GPVCWVL+SEIFPLRLRAQA+ALGAVG+RV SG +AMSFLSVS AITVGGTFF+FS+ISA
Sbjct: 419 GPVCWVLTSEIFPLRLRAQAAALGAVGNRVCSGLVAMSFLSVSDAITVGGTFFIFSVISA 478
Query: 467 LSVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVENR 514
LSVAFVY VPETKGKSLEQI +LFQ+E E GEVELGD E LV+
Sbjct: 479 LSVAFVYMFVPETKGKSLEQIGLLFQNEHEWQRGEVELGDVEHLVQKE 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147819414|emb|CAN66670.1| hypothetical protein VITISV_017987 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/528 (75%), Positives = 452/528 (85%), Gaps = 19/528 (3%)
Query: 1 MGVQENGN--------------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLA 46
+GVQENGN KYRRMD+ EED++ Q S ST+KYV A
Sbjct: 4 VGVQENGNGEMGLSGVPLGSKNKYRRMDSELTEEDDA-----SQSHHHHVSNSTKKYVFA 58
Query: 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD 106
CA FASLNSVLLGYDVGVMSGAIIFI+EDLKITEVQ+EVLVG LSI+SL GSLAGG+TSD
Sbjct: 59 CAVFASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQEEVLVGSLSIVSLLGSLAGGRTSD 118
Query: 107 VLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166
V+GRKWT+ LAA++FQ GAAIMT APSF +L++GRLLAGVGIGFGVMIAP+YIAEISP++
Sbjct: 119 VIGRKWTMGLAAVIFQTGAAIMTFAPSFQILMVGRLLAGVGIGFGVMIAPVYIAEISPTV 178
Query: 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPES 226
ARG+LTSFPEIFINLGILLGYISNYAFS P H NWR+ML VGILPSVFI ALF+IPES
Sbjct: 179 ARGALTSFPEIFINLGILLGYISNYAFSSFPVHTNWRIMLAVGILPSVFIGFALFIIPES 238
Query: 227 PRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286
PRWLVM+ R++EAR VL KTNE+ EVEERLAEIQ+AAG+ NAEK+EEKAVWRE++ PSP
Sbjct: 239 PRWLVMKNRVEEARSVLLKTNENESEVEERLAEIQLAAGTGNAEKHEEKAVWRELLKPSP 298
Query: 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILI 346
++RRML+TG GIQCFQQITGIDATVYYSP IFKGAGI+GN+ LLAATVAVG TKT+FIL+
Sbjct: 299 SLRRMLVTGFGIQCFQQITGIDATVYYSPEIFKGAGIEGNSNLLAATVAVGITKTVFILV 358
Query: 347 AIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGI 406
AI LIDK+GRKPLLY+STIGMT+CL SL +LTFLG+G +GIAL +LSVCGNVAFFSVGI
Sbjct: 359 AIFLIDKLGRKPLLYISTIGMTVCLFSLGFTLTFLGSGNVGIALVVLSVCGNVAFFSVGI 418
Query: 407 GPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466
GPVCWVL+SEIFPLRLRAQA+ALGAVG+RV SG +AMSFLSVS AITVGGTFF+FS+ISA
Sbjct: 419 GPVCWVLTSEIFPLRLRAQAAALGAVGNRVCSGLVAMSFLSVSDAITVGGTFFIFSVISA 478
Query: 467 LSVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVENR 514
LSVAFVY VPETKGKSLEQI +LFQ+E E GEVELGD E LV+
Sbjct: 479 LSVAFVYMFVPETKGKSLEQIGLLFQNEHEWQRGEVELGDVEHLVQKE 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555983|ref|XP_002519026.1| sugar transporter, putative [Ricinus communis] gi|223541689|gb|EEF43237.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/523 (75%), Positives = 455/523 (86%), Gaps = 10/523 (1%)
Query: 1 MGVQENG-------NKYRRMDAAGNEEDNSLTQSP---EQEEGFDKSGSTRKYVLACAFF 50
MG Q NG NKYRRMD+ +E++++ S + +E ++ +KYVLACA F
Sbjct: 1 MGFQANGDAVGGMNNKYRRMDSDAVQEEDAVVLSNNNGQSQECINRKHDVKKYVLACAIF 60
Query: 51 ASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGR 110
ASLNSVL+GYDVGVMSGAIIFI++DLK++E Q+E+LVGILSIISLFGSLAGGKTSD +GR
Sbjct: 61 ASLNSVLMGYDVGVMSGAIIFIQQDLKLSEAQEEILVGILSIISLFGSLAGGKTSDAIGR 120
Query: 111 KWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGS 170
KWTIALAA+VFQ GAAIMTLAPSF++LIIGRLLAG+GIGFGVMIAP+YIAEISP+ ARG
Sbjct: 121 KWTIALAAVVFQTGAAIMTLAPSFSILIIGRLLAGIGIGFGVMIAPVYIAEISPTAARGF 180
Query: 171 LTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWL 230
LTSFPEIFINLGILLGY+SNY FS LPAHI+WRVMLGVGILPS+F+ LALFVIPESPRWL
Sbjct: 181 LTSFPEIFINLGILLGYVSNYVFSGLPAHISWRVMLGVGILPSIFMGLALFVIPESPRWL 240
Query: 231 VMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290
MQ RI+EARLVL KTNE+ EVEERLAEIQ+A+G NAEK AVW EI++PSPAVR+
Sbjct: 241 AMQNRIEEARLVLLKTNENESEVEERLAEIQLASGLTNAEKYGANAVWHEILHPSPAVRQ 300
Query: 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIIL 350
MLI GCGIQ FQQITGIDATVYYSPTIFK AGIKGN +LLAATVAVGFTKT+FIL+AI L
Sbjct: 301 MLIAGCGIQFFQQITGIDATVYYSPTIFKDAGIKGNTQLLAATVAVGFTKTMFILVAIFL 360
Query: 351 IDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVC 410
IDKVGR+PLL+VST+GM+ LL LS+SL F+G+G+ GI LA+LSVC NVAFFS+G+GPVC
Sbjct: 361 IDKVGRRPLLFVSTVGMSTSLLVLSVSLLFMGDGKFGIGLAMLSVCANVAFFSIGLGPVC 420
Query: 411 WVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVA 470
WV+SSEIFPLRLRAQASALGAVGSRVSSG + MSFLSVS AITVGGTFFVFS+ISALSV
Sbjct: 421 WVMSSEIFPLRLRAQASALGAVGSRVSSGVVTMSFLSVSRAITVGGTFFVFSVISALSVV 480
Query: 471 FVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVEN 513
FV+KC+PETKGKSLEQIEM+FQ+E E GEVELGD ERLV+
Sbjct: 481 FVHKCIPETKGKSLEQIEMMFQNEGEWQGGEVELGDVERLVQK 523
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877838|gb|ADP37150.1| putative polyol/monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/522 (77%), Positives = 441/522 (84%), Gaps = 14/522 (2%)
Query: 1 MGVQENGN--------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFAS 52
+GV E+GN Y RMD+ ED P+ ST KYV CA FAS
Sbjct: 4 VGVLESGNGNGVGSKSAYTRMDSEIRSEDGVSPCHPQANT------STNKYVFVCAVFAS 57
Query: 53 LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKW 112
LNSVLLGYDVGVMSGAI+FI+EDLKITEVQ+EVLVG LSIISL GSLAGGKTSD +GRKW
Sbjct: 58 LNSVLLGYDVGVMSGAILFIQEDLKITEVQEEVLVGCLSIISLLGSLAGGKTSDAIGRKW 117
Query: 113 TIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLT 172
TIALAA VFQ GAA+M LAPSF VLI+GRLLAGVGIGFGVMIAP+YIAEISP+I RGSLT
Sbjct: 118 TIALAAFVFQTGAAVMALAPSFPVLIVGRLLAGVGIGFGVMIAPVYIAEISPAITRGSLT 177
Query: 173 SFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVM 232
SFPEIFINLGILLGY+SNYAFS LP HINWR+MLGVGILPSVFI LALF+IPESPRWLVM
Sbjct: 178 SFPEIFINLGILLGYVSNYAFSGLPVHINWRIMLGVGILPSVFIGLALFIIPESPRWLVM 237
Query: 233 QGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML 292
Q RI+EARLVL KTN S EVE+RL EIQ AAG NA ++E+KAVWRE+ PSP+VRRML
Sbjct: 238 QNRIEEARLVLLKTNVSEIEVEDRLVEIQQAAGIANATRHEQKAVWRELFCPSPSVRRML 297
Query: 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILID 352
ITGCGIQCFQQITGIDATVYYSPTIFK AGIKGN LLAATVAVGFTKT+FIL+A LID
Sbjct: 298 ITGCGIQCFQQITGIDATVYYSPTIFKDAGIKGNAGLLAATVAVGFTKTMFILVATFLID 357
Query: 353 KVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWV 412
+VGRKPLLYVSTIGMT CL L L+L+ LGNG LGI LAILSVCGNVAFFSVGIGP+CWV
Sbjct: 358 RVGRKPLLYVSTIGMTTCLFGLGLTLSLLGNGPLGIKLAILSVCGNVAFFSVGIGPICWV 417
Query: 413 LSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFV 472
LSSEIFPLRLRAQASALGAVGSRVSSG IAMSFLSV+ AITV GTFFVFS ISALS+AFV
Sbjct: 418 LSSEIFPLRLRAQASALGAVGSRVSSGTIAMSFLSVARAITVAGTFFVFSGISALSIAFV 477
Query: 473 YKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVENR 514
Y CVPETKGK+LE+IEMLF++E+ER GE+EL D E LV+
Sbjct: 478 YMCVPETKGKTLEEIEMLFKNEKERRGGELELRDVEHLVQKE 519
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446545|ref|XP_003593550.1| hypothetical protein MTR_2g013310 [Medicago truncatula] gi|355482598|gb|AES63801.1| hypothetical protein MTR_2g013310 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/526 (74%), Positives = 446/526 (84%), Gaps = 24/526 (4%)
Query: 3 VQENGN--------------KYRRMDAAGNEEDNSLTQSPEQEEGF-DKSGSTRKYVLAC 47
VQENGN KY RM + + E+EEGF + ++KY+ AC
Sbjct: 6 VQENGNGNGDVIEIPLGAKNKYIRMTS---------EEEEEEEEGFATRKHDSKKYIFAC 56
Query: 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV 107
A FASLNSVLLGYDVGVMSGAIIFI+ DLKITEVQQEVLVGILSIISL GSLAGGKTSD
Sbjct: 57 AVFASLNSVLLGYDVGVMSGAIIFIQGDLKITEVQQEVLVGILSIISLLGSLAGGKTSDW 116
Query: 108 LGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIA 167
+GRKWTI LAA++FQ G AIMTLAPSF VL+IGRL+AGVGIGFGVMIAP+YIAEISP+IA
Sbjct: 117 IGRKWTIGLAALIFQTGGAIMTLAPSFKVLMIGRLIAGVGIGFGVMIAPVYIAEISPAIA 176
Query: 168 RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227
RGSLTSFPEIFIN GILLGYISNYAFS+LPAH+NWR+MLGVG++PSV IA+ALF+IPESP
Sbjct: 177 RGSLTSFPEIFINFGILLGYISNYAFSKLPAHLNWRIMLGVGLIPSVVIAVALFIIPESP 236
Query: 228 RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287
RWLV+Q RI+EA+LVLSK +ES K+ EE+L EIQ AAGS NA+K E KAVW+EI+ PSP
Sbjct: 237 RWLVVQNRIEEAKLVLSKISESEKDAEEKLQEIQKAAGSGNADKYETKAVWKEILYPSPP 296
Query: 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347
VRRMLITGCGIQCFQQITGID TVYYSPTIFK AGI GN+ELLAATVAVGFTKT+FILIA
Sbjct: 297 VRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGNSELLAATVAVGFTKTVFILIA 356
Query: 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407
I+LIDK+GRKPLLYVSTIGMTI L SLS +L FL + ++GIALAIL+VCGNVA FSVG+G
Sbjct: 357 ILLIDKLGRKPLLYVSTIGMTISLFSLSFALAFLSHAKIGIALAILAVCGNVASFSVGLG 416
Query: 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467
P+CWVLSSEIFPLRLRAQASALGAVGSRVSSGAI+MSFLSV+ AITV GTFFVF +IS
Sbjct: 417 PICWVLSSEIFPLRLRAQASALGAVGSRVSSGAISMSFLSVTKAITVAGTFFVFGVISCS 476
Query: 468 SVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVEN 513
+VAFV+ CVPETKGKSLE+IE+LFQ+ E EVE+GD E L++
Sbjct: 477 AVAFVHYCVPETKGKSLEEIEVLFQNVGESQESEVEMGDVEHLMQK 522
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549365|ref|XP_003543064.1| PREDICTED: probable polyol transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/528 (74%), Positives = 445/528 (84%), Gaps = 23/528 (4%)
Query: 1 MGVQENGN---------------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVL 45
+GVQENGN KY +M + EED + QS + E T+KY+
Sbjct: 4 VGVQENGNGNGDGISEIPLGTKTKYIKMTSDPVEEDEEVLQSRKYE--------TKKYIF 55
Query: 46 ACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTS 105
ACA FASLNSVLLGYDVGVMSGAIIFI+EDLKITEVQQEVLVGILSIISL GSLAGGKTS
Sbjct: 56 ACAVFASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQQEVLVGILSIISLLGSLAGGKTS 115
Query: 106 DVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPS 165
D +GRKWTI LAA++FQ G A+M LAPSF VL+IGRL+AGVGIGFGVMIAP+YIAEISP+
Sbjct: 116 DAIGRKWTIGLAAVIFQTGGAVMALAPSFKVLMIGRLMAGVGIGFGVMIAPVYIAEISPA 175
Query: 166 IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPE 225
IARGSLTSFPEIFIN GILLGYISNYAFSRLPAHINWR+MLGVG++PS+ IA+ALFVIPE
Sbjct: 176 IARGSLTSFPEIFINFGILLGYISNYAFSRLPAHINWRIMLGVGLIPSLVIAIALFVIPE 235
Query: 226 SPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285
SPRWLV+Q RI+EAR VL K NES KE EE+L EIQ AAGS NA K E KAVW+EI+ P+
Sbjct: 236 SPRWLVVQNRIEEARAVLLKINESEKEAEEKLQEIQAAAGSANAGKYEPKAVWKEILCPT 295
Query: 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFIL 345
P VRRMLITGCGIQCFQQITGID TVYYSPTIFK AGI GN+ELLAATVAVGFTKT+FIL
Sbjct: 296 PPVRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGNSELLAATVAVGFTKTLFIL 355
Query: 346 IAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVG 405
IAI LIDK+GRKPLLY STIGMT+CL SLSLSL L + ++GIALAIL+VCGNVA FSVG
Sbjct: 356 IAIFLIDKLGRKPLLYASTIGMTVCLFSLSLSLAILSHAKVGIALAILAVCGNVASFSVG 415
Query: 406 IGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLIS 465
+GP+CWVLSSEIFPLRLRAQASALGAVGSRVSSGAI+MSFLSVS AITV GTFFVF ++S
Sbjct: 416 LGPICWVLSSEIFPLRLRAQASALGAVGSRVSSGAISMSFLSVSRAITVAGTFFVFGVVS 475
Query: 466 ALSVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVEN 513
+VAFV+ CVPET+GK+LE+IE+LF+DE + EVE+GD E L++
Sbjct: 476 CCAVAFVHYCVPETRGKTLEEIEVLFKDEDDLQESEVEMGDVECLMQK 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555132|ref|XP_003545891.1| PREDICTED: probable polyol transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/526 (75%), Positives = 447/526 (84%), Gaps = 24/526 (4%)
Query: 3 VQENGN---------------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLAC 47
VQENGN KY +M + EED L QS + E T+KY+ AC
Sbjct: 6 VQENGNGNGDGISEIPLGTKTKYIKMTSDPVEEDEVL-QSRKYE--------TKKYIFAC 56
Query: 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV 107
A FASLNSVLLGYDVGVMSGAIIFI+EDLKI+EVQQEVLVGILSIISL GSLAGGKTSD
Sbjct: 57 AVFASLNSVLLGYDVGVMSGAIIFIQEDLKISEVQQEVLVGILSIISLLGSLAGGKTSDA 116
Query: 108 LGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIA 167
+GRKWTI LAA++FQ G A+M LAPSF VL+IGRL+AGVGIGFGVMIAP+YIAEISP+IA
Sbjct: 117 IGRKWTIGLAAVIFQTGGAVMALAPSFKVLMIGRLMAGVGIGFGVMIAPVYIAEISPAIA 176
Query: 168 RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227
RGSLTSFPEIFIN GILLGYISNYAFSRLP+HINWR+MLGVG++PS+ IA+ALFVIPESP
Sbjct: 177 RGSLTSFPEIFINFGILLGYISNYAFSRLPSHINWRIMLGVGLIPSLVIAIALFVIPESP 236
Query: 228 RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287
RWLV+Q RI+EAR VL K NES KE EE+L EIQVAAGS NA+K E KAVW+EI+ P+P
Sbjct: 237 RWLVVQNRIEEARAVLLKINESEKEAEEKLQEIQVAAGSANADKYEPKAVWKEILCPTPP 296
Query: 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347
VRRMLITGCGIQCFQQITGID TVYYSPTIFK AGI GN+ELLAATVAVGFTKT+FILIA
Sbjct: 297 VRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGNSELLAATVAVGFTKTLFILIA 356
Query: 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407
I LIDK+GRKPLLY STIGMT+CL SLSLSL FL + ++GIALAIL+VCGNVA FSVG+G
Sbjct: 357 IFLIDKLGRKPLLYASTIGMTVCLFSLSLSLAFLSHAKVGIALAILAVCGNVASFSVGLG 416
Query: 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467
P+CWVLSSEIFPLRLRAQASALGAVGSRVSSGAI+MSFLSVS AITV GTFFVF ++S
Sbjct: 417 PICWVLSSEIFPLRLRAQASALGAVGSRVSSGAISMSFLSVSRAITVAGTFFVFGIVSCC 476
Query: 468 SVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVEN 513
+VAFV+ CVPET+GK+LE+IE+LF+DE + EVE+GD ERL++
Sbjct: 477 AVAFVHYCVPETRGKTLEEIEVLFKDEDDLQESEVEMGDVERLMQK 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126709|ref|XP_002319907.1| predicted protein [Populus trichocarpa] gi|222858283|gb|EEE95830.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/502 (75%), Positives = 438/502 (87%), Gaps = 3/502 (0%)
Query: 13 MDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFI 72
MD+ E+ + + QE+ +S STRKYVLACA FASLNSVLLGYDVGVMSGAIIFI
Sbjct: 1 MDSEVTEDFDDGSHHHHQEK---RSSSTRKYVLACAIFASLNSVLLGYDVGVMSGAIIFI 57
Query: 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP 132
+EDLKITEVQ+EVL+G LSI+SLFGSLAGG+TSD++GRKWT+ALAAI+FQ GAA MTLAP
Sbjct: 58 QEDLKITEVQEEVLIGCLSILSLFGSLAGGRTSDIIGRKWTMALAAIIFQTGAATMTLAP 117
Query: 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192
SF VLIIGR LAG+GIGFGVMIAP+YIAEISPS+ RGSLTSFPEIFINLGILLGY+SN+A
Sbjct: 118 SFEVLIIGRFLAGIGIGFGVMIAPIYIAEISPSVTRGSLTSFPEIFINLGILLGYVSNFA 177
Query: 193 FSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKE 252
FS LP HI+WRVMLGVGILPS FI ALF+IPESPRWLVM+ R++EAR VL KT ++ E
Sbjct: 178 FSGLPEHISWRVMLGVGILPSFFIGAALFIIPESPRWLVMKNRVEEARTVLLKTIDNEAE 237
Query: 253 VEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVY 312
VEERLAEI +AAG+ +AEK EEKAVWRE+++PSP +RRMLITG GIQCFQQITGIDATVY
Sbjct: 238 VEERLAEILLAAGTGSAEKYEEKAVWREMLSPSPTLRRMLITGFGIQCFQQITGIDATVY 297
Query: 313 YSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372
YSP IF+GAGI+ ++LLAATVAVG +KT FIL+AI LID++GRKPLLYVSTIGMTICL
Sbjct: 298 YSPEIFQGAGIQDKSKLLAATVAVGVSKTAFILVAIFLIDRLGRKPLLYVSTIGMTICLF 357
Query: 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAV 432
S+ ++LTF+G GQ+GIA+AIL VC NVAFFSVGIGPVCWVL+SEIFPLRLRAQA+ALGAV
Sbjct: 358 SIGVTLTFIGQGQVGIAMAILFVCSNVAFFSVGIGPVCWVLTSEIFPLRLRAQAAALGAV 417
Query: 433 GSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQ 492
G+RV SG +AMSFLSV+ AI+VGGTFFVFS ISA+SV FVY VPETKGKSLEQIE+LF+
Sbjct: 418 GNRVCSGLVAMSFLSVTRAISVGGTFFVFSGISAISVLFVYALVPETKGKSLEQIELLFK 477
Query: 493 DERERPVGEVELGDTERLVENR 514
DE E EVELGD LV+ +
Sbjct: 478 DEHEWQGSEVELGDVVHLVQKQ 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553811|ref|XP_002517946.1| sugar transporter, putative [Ricinus communis] gi|223542928|gb|EEF44464.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/525 (73%), Positives = 443/525 (84%), Gaps = 14/525 (2%)
Query: 1 MGVQENGN-----------KYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAF 49
+GVQENGN KY+RM++ E+ + + Q D+S STR+YVLACA
Sbjct: 4 VGVQENGNGQVDVSLGGKNKYKRMNSEFTEDFDDASHHHHQR---DRSRSTRRYVLACAI 60
Query: 50 FASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG 109
FASLNSVLLGYDVGVMSGAIIFI+EDLKITEVQ+EVLVG LSI+SLFGSLAGG+TSDV+G
Sbjct: 61 FASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQEEVLVGCLSIVSLFGSLAGGRTSDVIG 120
Query: 110 RKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARG 169
RKWT+ LAA+VFQ+GAA+MT APSF +L+IGR LAGVGIGFGVMIAP+YIAEISP+++RG
Sbjct: 121 RKWTMGLAAVVFQSGAAVMTFAPSFQILMIGRFLAGVGIGFGVMIAPIYIAEISPAVSRG 180
Query: 170 SLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRW 229
SLTSFPEIFINLGILLGY+SNYAFS L H WRVML VGILPS+FIA ALF+IPESPRW
Sbjct: 181 SLTSFPEIFINLGILLGYVSNYAFSNLSVHTGWRVMLAVGILPSIFIAFALFIIPESPRW 240
Query: 230 LVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVR 289
LVMQ RI+EARLVL KTN++ +EVEERL EIQ AAG+ N +K EEKAVWRE++ PSPA+R
Sbjct: 241 LVMQNRIEEARLVLLKTNDNEREVEERLEEIQKAAGNANEDKYEEKAVWREMLTPSPALR 300
Query: 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAII 349
RMLI G GIQCFQQITGIDATVYYSP I + AGIK +LLAATVAVG +KT FIL+AI
Sbjct: 301 RMLIVGFGIQCFQQITGIDATVYYSPEILQEAGIKDKTKLLAATVAVGISKTAFILVAIF 360
Query: 350 LIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPV 409
LIDK+GRKPLLY+STIGMTICL SL +LTFLG GQ+GI L+IL VC NVAFFSVGIGP+
Sbjct: 361 LIDKLGRKPLLYLSTIGMTICLFSLGATLTFLGKGQVGIGLSILFVCANVAFFSVGIGPI 420
Query: 410 CWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSV 469
CWVL+SEIFPLRLRAQA+ALGAVG+R+ SG +AMSFLSVS AI+VGGTFF+FS ISALSV
Sbjct: 421 CWVLTSEIFPLRLRAQAAALGAVGNRLCSGLVAMSFLSVSGAISVGGTFFIFSAISALSV 480
Query: 470 AFVYKCVPETKGKSLEQIEMLFQDERERPVGEVELGDTERLVENR 514
FV+ VPET+GKSLEQIEMLFQ++ E EVELGD E LV+
Sbjct: 481 VFVHTLVPETRGKSLEQIEMLFQNQHEWQGSEVELGDVEHLVQKE 525
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444348|ref|XP_004139937.1| PREDICTED: probable polyol transporter 4-like [Cucumis sativus] gi|449531368|ref|XP_004172658.1| PREDICTED: probable polyol transporter 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/507 (75%), Positives = 440/507 (86%), Gaps = 7/507 (1%)
Query: 8 NKYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSG 67
NKY RMD+ +E + P Q + + +T KYVLACA FASLNSVLLGYDVGVMSG
Sbjct: 25 NKYTRMDSELDEHHHH----PHQR---NPTSTTTKYVLACAVFASLNSVLLGYDVGVMSG 77
Query: 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI 127
AIIFI+EDLKITEVQ+EVLVGILS++SL GSLAGGKTSD +GRKWT+ALAA+VFQ GAAI
Sbjct: 78 AIIFIQEDLKITEVQEEVLVGILSVLSLLGSLAGGKTSDAIGRKWTMALAALVFQIGAAI 137
Query: 128 MTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGY 187
MTLAP+F VL++GR+LAGVGIG GVMIAP+YIAEISP++ARGSLTSFPEIFINLGILLGY
Sbjct: 138 MTLAPTFQVLLLGRILAGVGIGLGVMIAPVYIAEISPTVARGSLTSFPEIFINLGILLGY 197
Query: 188 ISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTN 247
+SN+AFS LPAH NWR+ML VGILPS+FI ALF+IPESPRWLV++ RI++AR VL KT
Sbjct: 198 VSNFAFSGLPAHTNWRIMLAVGILPSIFIGFALFIIPESPRWLVLKNRIEDARSVLLKTI 257
Query: 248 ESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGI 307
++ KEVEERLAEIQ+AAG +AEK EEK+ WRE +NPSPA+RRMLITG GIQCFQQITGI
Sbjct: 258 DNEKEVEERLAEIQLAAGVSSAEKYEEKSAWREFLNPSPALRRMLITGFGIQCFQQITGI 317
Query: 308 DATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367
DATVYYSP IFK AGI GN++LLAATVAVG KT FI++AIILIDK+GRKPLLY+STIGM
Sbjct: 318 DATVYYSPEIFKDAGIHGNSKLLAATVAVGLAKTGFIMVAIILIDKLGRKPLLYLSTIGM 377
Query: 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427
TICL L +LTFLGNG++G+ LAI VCGNVAFFSVGIGPVCWVL+SEIFPL+LRAQA+
Sbjct: 378 TICLFCLGFTLTFLGNGKVGVGLAIFWVCGNVAFFSVGIGPVCWVLTSEIFPLKLRAQAA 437
Query: 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQI 487
ALGAVG+RVSSG +AMSFLSVS AITVGGTFF+FS ISALSVAFVYK VPETKGKSLEQI
Sbjct: 438 ALGAVGNRVSSGIVAMSFLSVSRAITVGGTFFIFSFISALSVAFVYKFVPETKGKSLEQI 497
Query: 488 EMLFQDERERPVGEVELGDTERLVENR 514
E LFQ+E EVELGD E+LV+
Sbjct: 498 ESLFQNEIGWRENEVELGDVEQLVDKN 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| TAIR|locus:2051443 | 526 | AT2G20780 [Arabidopsis thalian | 0.976 | 0.954 | 0.708 | 2.2e-185 | |
| TAIR|locus:2094034 | 539 | PMT5 "polyol/monosaccharide tr | 0.929 | 0.886 | 0.478 | 3.3e-118 | |
| TAIR|locus:2052956 | 511 | PMT1 "polyol/monosaccharide tr | 0.883 | 0.888 | 0.487 | 3.5e-114 | |
| TAIR|locus:2046333 | 508 | AT2G18480 [Arabidopsis thalian | 0.892 | 0.903 | 0.484 | 1.2e-113 | |
| TAIR|locus:2052971 | 511 | PMT2 "polyol/monosaccharide tr | 0.883 | 0.888 | 0.478 | 8.4e-113 | |
| TAIR|locus:2115415 | 493 | PMT6 "polyol/monosaccharide tr | 0.918 | 0.957 | 0.459 | 8.4e-113 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.630 | 0.558 | 0.357 | 7.6e-74 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.859 | 0.954 | 0.334 | 1.1e-71 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.877 | 0.886 | 0.351 | 6.3e-69 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.636 | 0.504 | 0.345 | 2.9e-68 |
| TAIR|locus:2051443 AT2G20780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1798 (638.0 bits), Expect = 2.2e-185, P = 2.2e-185
Identities = 362/511 (70%), Positives = 411/511 (80%)
Query: 1 MGVQENGNKYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGY 60
+ V NKY+RMD+ E N E ++ TRKYV+ACAFFASLN+VLLGY
Sbjct: 19 VSVGNKKNKYQRMDSDAEESQN-------HREAEARNSRTRKYVMACAFFASLNNVLLGY 71
Query: 61 DVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120
DVGVMSGA++FI++DLKITEVQ EVL+G LSIISLFGSLAGG+TSD +GRKWT+ALAA+V
Sbjct: 72 DVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALV 131
Query: 121 FQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFIN 180
FQ GAA+M +APSF VL+IGR LAG+GIG GVMIAP+YIAEISP++ARG TSFPEIFIN
Sbjct: 132 FQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFIN 191
Query: 181 LGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEAR 240
LGILLGY+SNYAFS L HI+WR+ML VGILPSVFI AL VIPESPRWLVM+GR+D AR
Sbjct: 192 LGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAR 251
Query: 241 LVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQC 300
VL KTNE E EERLAEIQ+AA + E +E++ VWRE+++PSP VR+MLI G GIQC
Sbjct: 252 EVLMKTNERDDEAEERLAEIQLAAA--HTEGSEDRPVWRELLSPSPVVRKMLIVGFGIQC 309
Query: 301 FQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLL 360
FQQITGIDATVYYSP I K AGI+ +LLAATVAVG TKT D VGRKPLL
Sbjct: 310 FQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLL 369
Query: 361 YVSTIGMTICXXXXXXXXTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPL 420
YVSTIGMT+C TFLG G LGI LA+L VCGNVAFFS+G+GPVCWVL+SEIFPL
Sbjct: 370 YVSTIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPL 429
Query: 421 RLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480
RLRAQASALGAVG+RV SG +AMSFLSVS AITVGGTFFVFSL+SALSV FVY VPET
Sbjct: 430 RLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVYVLVPETS 489
Query: 481 GKSLEQIEMLFQDERERPVGEVELGDTERLV 511
GKSLEQIE++FQ ER GEVELGD ERLV
Sbjct: 490 GKSLEQIELMFQGGLERKDGEVELGDAERLV 520
|
|
| TAIR|locus:2094034 PMT5 "polyol/monosaccharide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/493 (47%), Positives = 328/493 (66%)
Query: 36 KSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISL 95
K Y ACA AS+ S+LLGYD+GVMSGA+I+IK DLKI ++Q +L G L+I SL
Sbjct: 28 KPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSL 87
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIA 155
GS A G+TSD +GR++TI LA +F AGA +M L+P++A L+ GR +AG+G+G+ +MIA
Sbjct: 88 IGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIA 147
Query: 156 PLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215
P+Y AE+SP+ +RG L SFPE+FIN GI+LGY+SN AFS LP + WR+MLG+G +PSV
Sbjct: 148 PVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVI 207
Query: 216 IALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAG-----SDN-- 268
+A+ + +PESPRWLVMQGR+ +A+ VL KT++S E RL +I+ AAG D+
Sbjct: 208 LAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVV 267
Query: 269 --AEKNEE-KAVWREI-INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIK 324
+ +N + VWRE+ I P+PAVRR++I GI FQQ +GIDA V +SP IFK AG+K
Sbjct: 268 QVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLK 327
Query: 325 GNNELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVSTIGMTICXXXXXXXXTFLGNG 384
+++ L ATVAVG KT D++GR+PLL S GM + T +
Sbjct: 328 TDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQS 387
Query: 385 QL----GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440
+ + +AI +V VA FS+G GP+ WV SSEIFPLRLR+Q S++G V +RV+SG
Sbjct: 388 EKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGV 447
Query: 441 IAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDERERPVG 500
I++SFL +S A+T GG F++F I+ ++ F Y +PET+G+ LE ++ LF R R
Sbjct: 448 ISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELFSGFRWRDSK 507
Query: 501 EVELGDTERLVEN 513
G+ E+ V N
Sbjct: 508 SKPKGNPEKTVPN 520
|
|
| TAIR|locus:2052956 PMT1 "polyol/monosaccharide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 229/470 (48%), Positives = 319/470 (67%)
Query: 38 GSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFG 97
G+ +Y ACA AS+ S++LGYD+GVMSGA IFIK+DLK+++VQ E+L+GIL+I SL G
Sbjct: 20 GNRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVG 79
Query: 98 SLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPL 157
S A G+TSD LGR++TI LA F GA +M A ++ +++GR +AG+G+G+ +MIAP+
Sbjct: 80 SGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPV 139
Query: 158 YIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIA 217
Y AE++P+ +RG LTSFPEIFIN+GILLGY+SNY FS+LP H+ WR MLGVG +PSVF+A
Sbjct: 140 YTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLA 199
Query: 218 LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAG-----SDNA--- 269
+ + +PESPRWLV+QGR+ +A VL KT+ + +E RL +I+ A G +D+
Sbjct: 200 IGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDDMTDDVIVV 259
Query: 270 --EKNEEKAVWREI-INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGN 326
+K+ K VW+++ + P+P+VR +LI GI QQ +GIDA V YSPTIF AG+K
Sbjct: 260 PNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSK 319
Query: 327 NELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVSTIGMTICXXXXXXXXTFLGN--G 384
N+ L ATVAVG KT D+ GR+ LL S GM + T + G
Sbjct: 320 NDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTSLTVINRNPG 379
Query: 385 QL---GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441
Q I LA+ +V VA FS+G GPV WV SEIFP+RLRAQ ++LG + +R+ SG I
Sbjct: 380 QTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGII 439
Query: 442 AMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLF 491
M+FLS+S +T+GG F +F+ ++A + F + +PET+G LE++E LF
Sbjct: 440 GMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLF 489
|
|
| TAIR|locus:2046333 AT2G18480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 229/473 (48%), Positives = 312/473 (65%)
Query: 33 GFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSI 92
G D + K+ CA AS+ S++ GYD GVMSGA IFI++DLKI + Q EVL GIL++
Sbjct: 11 GSDPNPHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNL 70
Query: 93 ISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGV 152
+L GSL GKTSDV+GR++TIAL+A++F G+ +M P++ VL++GR +AGVG+GF +
Sbjct: 71 CALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFAL 130
Query: 153 MIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212
MIAP+Y AEIS + RG LTS PE+ I+LGILLGY+SNY F +L + WR+MLG+ P
Sbjct: 131 MIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFP 190
Query: 213 SVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAE-- 270
S+ +A + +PESPRWLVMQGR++EA+ ++ + + +E EER +I AA D E
Sbjct: 191 SLILAFGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIK 250
Query: 271 --------KNEEKAVWRE-IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA 321
KN K+VWRE +I P PAVR +LI GI F+ TGI+A V YSP IFK A
Sbjct: 251 EVGGGVKKKNHGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKA 310
Query: 322 GIKGNNELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVSTIGMTICXXXXXXXXTFL 381
G+ ++LL ATV VG TK DKVGR+ LL ST GM T +
Sbjct: 311 GVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAVSLTMV 370
Query: 382 GN-GQLG--IALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSS 438
G+L ++L+I+S VAFFS+G+GP+ WV SSEIFPLRLRAQ +++G +R+ +
Sbjct: 371 QRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMN 430
Query: 439 GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLF 491
++MSFLS++ AIT GG FFVF+ I+ + F + +PETKG LE++E LF
Sbjct: 431 ATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLF 483
|
|
| TAIR|locus:2052971 PMT2 "polyol/monosaccharide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 225/470 (47%), Positives = 317/470 (67%)
Query: 38 GSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFG 97
G+ ++ ACA AS+ S++LGYD+GVMSGA IFIK+DLK+++VQ E+L+GIL+I SL G
Sbjct: 20 GNRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIG 79
Query: 98 SLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPL 157
S A G+TSD +GR++TI LA F GA +M A ++ +++GR +AG+G+G+ +MIAP+
Sbjct: 80 SGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPV 139
Query: 158 YIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIA 217
Y E++P+ +RG L+SFPEIFIN+GILLGY+SNY F++LP HI WR MLG+G +PSVF+A
Sbjct: 140 YTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLA 199
Query: 218 LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAG-----SDNA--- 269
+ + +PESPRWLVMQGR+ +A VL KT+ + +E RL +I+ A G +D+
Sbjct: 200 IGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPDDMTDDVIVV 259
Query: 270 --EKNEEKAVWREI-INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGN 326
+K+ K VW+++ + P+P+VR +LI GI QQ +GIDA V YSPTIF AG+K
Sbjct: 260 PNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSK 319
Query: 327 NELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVSTIGMTICXXXXXXXXTFLGN--G 384
N+ L ATVAVG KT D+ GR+ LL S GM T + G
Sbjct: 320 NDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTSLTVIDRNPG 379
Query: 385 QL---GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441
Q I LA+ +V VA FS+G GPV WV +SEIFP+RLRAQ ++LG + +R+ SG I
Sbjct: 380 QTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGII 439
Query: 442 AMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLF 491
M+FLS+S +T+GG F +F+ ++ + F + +PET+G LE+IE LF
Sbjct: 440 GMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLF 489
|
|
| TAIR|locus:2115415 PMT6 "polyol/monosaccharide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 224/488 (45%), Positives = 320/488 (65%)
Query: 29 EQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVG 88
+Q G +K ++ L CA AS+ S++ GYD GVMSGA++FI+EDLK +VQ EVL G
Sbjct: 3 DQISG-EKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTG 61
Query: 89 ILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGI 148
IL++ +L GSL G+TSD++GR++TI LA+I+F G+ +M P++ VL+ GR AG+G+
Sbjct: 62 ILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGV 121
Query: 149 GFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208
GF +M+AP+Y AEI+ + RG L S P + I++GILLGYI NY FS+LP HI WR+MLG+
Sbjct: 122 GFALMVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGI 181
Query: 209 GILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD- 267
+PS+ +A + +PESPRWL+MQGR+ E + +L + S +E E R +I+ AAG D
Sbjct: 182 AAVPSLVLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDP 241
Query: 268 ---------NAEKNEEKAVWREII-NPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTI 317
+K + VW+E+I P+PAVRR+L+T GI FQ +GI+A + Y P I
Sbjct: 242 KCVDDVVKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRI 301
Query: 318 FKGAGIKGNNELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVSTIGMTICXXXXXXX 377
FK AGI ++L T+ VG KT DKVGR+ LL S GM I
Sbjct: 302 FKKAGITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFG 361
Query: 378 XTFLGN--GQLG--IALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVG 433
T N G+L + L+I++ VAFFS+G+GP+ WV SSE+FPL+LRAQ ++LG
Sbjct: 362 LTMAQNAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAV 421
Query: 434 SRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQD 493
+RV + ++MSFLS++ AIT GG FF+F+ ++A++ F + +PETKGKSLE+IE LFQ
Sbjct: 422 NRVMNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQR 481
Query: 494 ERERPVGE 501
+ ++ GE
Sbjct: 482 DGDKVRGE 489
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 118/330 (35%), Positives = 187/330 (56%)
Query: 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQ---QEVLVGILSIISLFGSL 99
YVL AF A + +L GYD GV+SGA+++I++D K + QE++V + ++ G+
Sbjct: 27 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAA 86
Query: 100 AGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYI 159
GG +D LGR+ I +A +F GA IM AP+ ++L++GR+ G+G+G M APLYI
Sbjct: 87 IGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYI 146
Query: 160 AEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219
+E SP+ RG+L S I G L Y+ N AF+ + WR MLG+ +P++ +
Sbjct: 147 SEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTG--TWRWMLGIAGIPALLQFVL 204
Query: 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279
+F +PESPRWL +GR +EA+ +L + S ++VE+ + ++ + ++ E+ + +
Sbjct: 205 MFTLPESPRWLYRKGREEEAKAILRRIY-SAEDVEQEIRALKDSVETEILEEGSSEKINM 263
Query: 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFT 339
+ + VRR LI G G+Q FQQ GI+ +YYSPTI + AG N L ++
Sbjct: 264 IKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGL 323
Query: 340 KTXXXXXXXXXXDKVGRKPLLYVSTIGMTI 369
D++GRK LL +S G+ I
Sbjct: 324 NAFGSIISIYFIDRIGRKKLLIISLFGVII 353
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 152/455 (33%), Positives = 252/455 (55%)
Query: 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV 107
AF A+ +L GYD GV+SGAI+FI ++ ++ +V + I + G+L G +D
Sbjct: 21 AFIAAFAGILFGYDTGVISGAILFISQEFHLSPQMNGFVVSAVLIGAFLGALFSGHLADY 80
Query: 108 LGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIA 167
+GRK + + A++F G AI ++ S + L+IGR++ G+ IG APLYI+EISP
Sbjct: 81 IGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASYSAPLYISEISPPHR 140
Query: 168 RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227
RG+L S ++ + +GI L Y+ +Y F+R H WR M G++P+ + L + V+P SP
Sbjct: 141 RGALVSLNQLAVTIGIFLSYVVDYYFAR---HDAWRSMFAAGVIPAALLLLGMIVLPYSP 197
Query: 228 RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287
RW+ +G ++A +L K E+ L I+ A ++K WR + S
Sbjct: 198 RWIFSRGHEEKALWILRKLRGHGPHAEQELEHIR-------ASLQQQKGDWRTLF--SKI 248
Query: 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTXXXXXX 347
+R L G+ FQQ+TGI+ +YY+PTI K G + + + AT+ +G
Sbjct: 249 IRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILATMGIGAVLVIITIIS 308
Query: 348 XXXXDKVGRKPLLYVSTIGMTICXXXXXXXXTFLGNGQLGIALAILSVCGNVAFFSVGIG 407
D +GR+PLL++ MT+ G+ +A S+ ++ FS+ +G
Sbjct: 309 LPLIDSLGRRPLLFIGVGAMTVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISGFSISLG 368
Query: 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467
P+ W++ SEIFPLR+R +++GA + S+ + ++FL++ + GTFF++ +IS +
Sbjct: 369 PIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIEYLGPSGTFFIYFIISVI 428
Query: 468 SVAFVYKCVPETKGKSLEQIEM-LFQDERERPVGE 501
++ F+Y VPETKG +LEQIE L+ + R +G+
Sbjct: 429 TLIFIYTSVPETKGVTLEQIEENLYAGKDMRYLGK 463
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 164/467 (35%), Positives = 251/467 (53%)
Query: 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQ---QEVLVGILSIISLFGSL 99
Y+L A + +L GYD GV+SGA+++IK+D ++ + QE +V + + ++ G+
Sbjct: 30 YILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAA 89
Query: 100 AGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYI 159
AGG +D GRK A +VF AGA +M AP VLI GRLL G+G+G + AP+YI
Sbjct: 90 AGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYI 149
Query: 160 AEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219
AE SPS RG L S + I G L Y+ N AF+++P WR MLGV +P+V +
Sbjct: 150 AEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPG--TWRWMLGVSGVPAVIQFIL 207
Query: 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279
+ +PESPRWL M+ R EA VL++T + + +E+ EI + ++ EK ++ V
Sbjct: 208 MLFMPESPRWLFMKNRKAEAIQVLARTYD-ISRLED---EIDHLSAAEEEEKQRKRTVGY 263
Query: 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFT 339
+ S +R + G G+Q FQQ TGI+ +YYSPTI + AG N L ++ V
Sbjct: 264 LDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAM 323
Query: 340 KTXXXXXXXXXXDKVGRKPLLYVSTIG----MTICXXXXXXXXTFLGNGQLGIALAILSV 395
D GRK L S G + I +G L LA+L +
Sbjct: 324 NAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGL 383
Query: 396 CGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVG 455
+ FF+ G+GPV W ++SEI+P + R + A + +S+ +A +FL+++ A G
Sbjct: 384 ALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTG 443
Query: 456 GTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDERERPVGEV 502
TF + + I+ L+V FV VPET+G + ++E ++ +ER G +
Sbjct: 444 MTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIW---KERAYGNI 487
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 114/330 (34%), Positives = 177/330 (53%)
Query: 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSL 99
T +V A F++L L GYD GV+SGA++ +K L + + QE+LV + +L
Sbjct: 77 TPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSAL 136
Query: 100 AGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYI 159
AGG + V GR+ I LA+ +F AG+A++ A + L+ GRL+ G+GIG M P+YI
Sbjct: 137 AGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYI 196
Query: 160 AEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219
AE+SP RG L + +FI G + + AFS L WR MLG+ +P+V
Sbjct: 197 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKD-GWRYMLGLAAVPAVIQFFG 255
Query: 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279
+PESPRWL+ +G+ +AR +LS+ + + ++E I+ + E V
Sbjct: 256 FLFLPESPRWLIQKGQTQKARRILSQMRGN-QTIDEEYDSIKNNIEEEEKEVGSAGPVIC 314
Query: 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFT 339
+++ P RR LI GCG+Q FQQ++GI+ +YYS TI + +G++ + + FT
Sbjct: 315 RMLS-YPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFT 373
Query: 340 KTXXXXXXXXXXDKVGRKPLLYVSTIGMTI 369
+KVGR+ L + S G T+
Sbjct: 374 NFIFTLVGVWLVEKVGRRKLTFGSLAGTTV 403
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WUU6 | PLT4_ARATH | No assigned EC number | 0.7265 | 0.9785 | 0.9562 | yes | no |
| P46333 | CSBC_BACSU | No assigned EC number | 0.3582 | 0.8365 | 0.9327 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3355 | 0.8618 | 0.9693 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00025836001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (526 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 514 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-105 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-102 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-77 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-23 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-22 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-18 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-18 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-13 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 9e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-10 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-10 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 8e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-08 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 3e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-05 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 | |
| PRK11652 | 394 | PRK11652, emrD, multidrug resistance protein D; Pr | 0.002 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-105
Identities = 166/458 (36%), Positives = 259/458 (56%), Gaps = 22/458 (4%)
Query: 47 CAFFASLNSVLLGYDVGVMSGAIIFIK-----------EDLKITEVQQEVLVGILSIISL 95
A A+L L GYD GV+ + IK + V ++V I S+ L
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVLIIGRLLAGVGIGFGVM 153
GSL GK D GRK ++ + ++F GA + A SF +LI+GR++ G+G+G +
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 154 IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213
+ P+YI+EI+P RG+L S ++ I GIL+ I ++ WR+ LG+ +P+
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 214 VFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNE 273
+ + + L +PESPRWLV++G+++EAR VL+K V +V++ + E + S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLR-GVSDVDQEIQEEKD---SLERSVEA 236
Query: 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAAT 333
EKA W E+ VR+ L+ G +Q FQQ+TGI+A YYSPTIF+ G+ + L T
Sbjct: 237 EKASWLELFR-GKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS---DSLLVT 292
Query: 334 VAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAIL 393
+ VG +F IAI L+D+ GR+PLL + GM IC L L ++L + + +AI+
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIV 352
Query: 394 SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453
+ +AFF++G GPV WV+ SE+FPL +R +A A+ + +++ I F ++ AI
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 454 VGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLF 491
G F VF+ + L + FV+ VPETKG++LE+I+ LF
Sbjct: 413 -GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-102
Identities = 166/481 (34%), Positives = 264/481 (54%), Gaps = 14/481 (2%)
Query: 20 EDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKIT 79
D +L + E GST V + A++ ++ GYD GV+ GA+ + K T
Sbjct: 2 SDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFT 61
Query: 80 E--------VQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA 131
++V I + G+L G SD GRK ++ + A++F GA +M LA
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121
Query: 132 P---SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYI 188
S +LI+GR+L G+G+G + P+Y++EI+P RG+LTS ++ I GIL+ Y
Sbjct: 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181
Query: 189 SNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNE 248
L + WR+ LG+ ++P+ + L LF +PESPRWLV +GR++EAR L++
Sbjct: 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG 241
Query: 249 SVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGID 308
+ E +E L E+++ + EK + W + + + +RR L G +Q FQQ TGI+
Sbjct: 242 TSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGIN 301
Query: 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMT 368
A +YYSPTIF+ AG+ + ++ VG F +AI L+D+ GR+PLL + GM
Sbjct: 302 AIMYYSPTIFENAGVS-TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA 360
Query: 369 ICLLSLSLSLTFLGNGQLGIA--LAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQA 426
ICL L + G + +AI+ + +AFF++G GPV WV+ SEIFPL LR +
Sbjct: 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 427 SALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQ 486
++ + +++ + F ++ +I VGG F F ++ L + FVY +PETKG++LE+
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 487 I 487
I
Sbjct: 481 I 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 1e-77
Identities = 146/492 (29%), Positives = 240/492 (48%), Gaps = 55/492 (11%)
Query: 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAI----IFIKEDLKITEVQQEVLVGILS---- 91
Y+ + A+L +L GYD V+SG + ++E L+G
Sbjct: 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASAL 65
Query: 92 IISLFGSLAGGKTSDVLGRKWTIALAAIVF---------------QAGAAIMTLAPSFAV 136
I + G GG S+ GR+ ++ +AA++F G P F
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF-- 123
Query: 137 LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL 196
+I R++ G+G+G M++P+YIAEI+P+ RG L SF + I G L+ Y NY +R
Sbjct: 124 -VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS 182
Query: 197 PA-----HINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVK 251
WR M +P++ + L+ +PE+PR+L+ +G+ ++A +L K +
Sbjct: 183 GDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL 242
Query: 252 EVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATV 311
+ L EI+ + + + ++ + ++ G + FQQ GI+ +
Sbjct: 243 ATQA-LQEIK-HSLDHGRKTGGKLLMFGVGV---------IVIGVMLSVFQQFVGINVVL 291
Query: 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICL 371
YY+P IFK G + LL T+ VG F ++AI+ +DK GRKPL + +GM I +
Sbjct: 292 YYAPEIFKTLGASTDIALL-QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 350
Query: 372 LSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431
SL + G +A+LS+ VA F++ GPVCWVL SEIFP +R +A A+ A
Sbjct: 351 FSLGTAFYTQAPG----IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI-A 405
Query: 432 VGSR------VSSGAIAMSFLSVSHAITVGG-TFFVFSLISALSVAFVYKCVPETKGKSL 484
V ++ VS M S A G +++++ + L+ F++K VPETKGK+L
Sbjct: 406 VAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465
Query: 485 EQIEMLFQDERE 496
E++E L++ E +
Sbjct: 466 EEMEALWEPETK 477
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL 108
L L G D G++S A+ + EDL ++ Q ++V S+ GSL G SD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 109 GRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIAR 168
GR+ + L ++F G+ ++ A S +L++GR L G+G G A IAE P R
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 169 GSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIP 224
G LG LLG + + + WR + + + + +AL L +
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLA---ESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 103/397 (25%), Positives = 177/397 (44%), Gaps = 38/397 (9%)
Query: 95 LFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT-LAPSFAVLIIGRLLAGVGIGFGVM 153
L GS G SD GRK + L + + A + ++T +P++ V ++ RLL G+GIG +
Sbjct: 141 LLGSFVFGYLSDRFGRK-KVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199
Query: 154 IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213
A + E P R + + ++F +LG++L + Y +WR + LP+
Sbjct: 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPT 253
Query: 214 VFIALALFVIPESPRWLVMQGRIDEARLVL---SKTNESVKEVEERLAEIQVAAGSDNAE 270
L + +PESPRWL+ QGRI+EA +L +K N K E L+ S + +
Sbjct: 254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKIN-GKKLPAEVLSLSLEKDLSSSKK 312
Query: 271 KNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELL 330
+ ++R +P +R+ + C + A YY + G + GN L
Sbjct: 313 QYSFLDLFR-----TPNLRKTTL------CLMMLWFTTAFSYYGLVLDLG-NLGGNIYLD 360
Query: 331 AA-TVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIA 389
+ V LI ++LID++GR+ + S + + LL L L L A
Sbjct: 361 LFISGLVEL---PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYF--LRTA 415
Query: 390 LAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS 449
LA+L G + F + ++ ++E++P +R + + +RV G+I FL
Sbjct: 416 LAVLGKFGITSAFQ-----MVYLYTAELYPTVVRNLGVGVCSTMARV--GSIISPFLVYL 468
Query: 450 HAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQ 486
+ +F ++ L+ +PETKG L +
Sbjct: 469 GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 79/388 (20%), Positives = 150/388 (38%), Gaps = 26/388 (6%)
Query: 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLA 100
+Y + L ++ GYD+ M A I + + VQ L I FG+L
Sbjct: 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71
Query: 101 GGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIA 160
G +D +GR+ + + ++F + LA + L+I R LAG+G+G + ++
Sbjct: 72 FGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVS 131
Query: 161 EISPSIARGSLTSFPEIFINLGILLG-YISNYAFSRLPAHINWRVMLGVG-ILPSVFIAL 218
E +P RG+ +G +G +++ L WR + VG I P + + L
Sbjct: 132 EYAPKRFRGTAVGLMFCGYPIGAAVGGFLA----GWLIPVFGWRSLFYVGGIAPLLLLLL 187
Query: 219 ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVW 278
+ +PES +LV + R+V + + E + L E A + +++V+
Sbjct: 188 LMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPE-------QKATQGTKRSVF 240
Query: 279 REIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGF 338
+ + A +L+ F + G+ + P + G + F
Sbjct: 241 KALFQGKTARITVLLWLL---YFMLLVGVYFLTNWLPKLMVELGFS-LSLAATGGALFNF 296
Query: 339 TKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGN 398
I +I L D++G + + +G ++ L + L + ++ G
Sbjct: 297 GGVIGSIIFGWLADRLGPRVTALLLLLG------AVFAVLVGSTLFSPTLLLLLGAIAG- 349
Query: 399 VAFFSVGIGPVCWVLSSEIFPLRLRAQA 426
FF G + L + +P +RA
Sbjct: 350 --FFVNGGQSGLYALMALFYPTAIRATG 375
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 5e-18
Identities = 73/394 (18%), Positives = 139/394 (35%), Gaps = 56/394 (14%)
Query: 52 SLNSVLLGYDVGVMSGAI-IFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGR 110
L + L G ++ A+ +++ EDL I+ + +L+ S+ G+ SD GR
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61
Query: 111 KWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGS 170
+ + + ++F G ++ A S +L++ R+L G+G G A IA+ P RG
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121
Query: 171 LTSFPEIFINLGILLGYISNYAFSRLPAHINWR-VMLGVGILPSVFIALALFVIPESPRW 229
LG LG + + + WR L + IL + LA ++P P
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAVLAALLLPRPPP- 177
Query: 230 LVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVR 289
++ + ++ +
Sbjct: 178 -------------------------------------ESKRPKPAEEAPAPLVPAWKLLL 200
Query: 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAII 349
R + + A + Y P + G+ L A + +G + + ++
Sbjct: 201 RDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL----SALLAGLLLGLAGLLGAIGRLL 256
Query: 350 ---LIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGI 406
L D++GR+ L ++ + + + L L+L + L +AL +L + F
Sbjct: 257 LGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVF----- 311
Query: 407 GPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440
P L S++ P R AS L +
Sbjct: 312 -PALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 3e-13
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 23/258 (8%)
Query: 7 GNKYRRMDAAGNEEDNSLTQSPE---QEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVG 63
G +A ++ L Q E QE G + +VL A A G +V
Sbjct: 131 GPPGGEGEAERRADEEELAQQYELIIQECGHGRFQWALFFVLGLALMAD------GVEVF 184
Query: 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA 123
V+ + ++DL I + + +L I+ + + G+ G +D LGRK + + V
Sbjct: 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF 244
Query: 124 GAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGI 183
A + + + RLL+G GIG + I Y AE RG S+ +F +G
Sbjct: 245 FAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG 304
Query: 184 LLGYISNYAFSRLPAH------------INWRVMLGVGILPSVFIALALFVIPESPRWLV 231
+ Y + A++ +P + +WRV + V P VF AL +PESPR+ +
Sbjct: 305 I--YAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
Query: 232 MQGRIDEARLVLSKTNES 249
G+ DEA ++L +++
Sbjct: 363 ENGKHDEAWMILKLIHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 80/394 (20%), Positives = 149/394 (37%), Gaps = 68/394 (17%)
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA--------VLIIGRLLAGVG 147
G++ G D +GRK T+ + ++ G ++ L PS+A +L++ RL+ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 148 IGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH-----INW 202
+G A LY+AE +P RG SF ++ +G+LL ++ S L W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 203 RVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVE-ERLAEIQ 261
R+ V V + + L++ R L +T K E +
Sbjct: 170 RIPFLVSA---VLVLIGLYL-----------------RRNLEETPVFEKAQEKHKKKRGP 209
Query: 262 VAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA 321
+ + + P + + + F IT Y PT
Sbjct: 210 I------------AETLTK--HRKPFLLGLGLVIATTTTFYLIT------TYLPTYLTQT 249
Query: 322 GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFL 381
N L + I I ++ L D++GR+P+L + T+ + + L ++L
Sbjct: 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS 309
Query: 382 GNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSG- 439
G+ L V G + GP+ L E+FP +R ++L + + G
Sbjct: 310 GS----FTLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLAYNLAGAIFGGF 364
Query: 440 --AIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471
IA + ++++ G + + ++AL++
Sbjct: 365 APYIAAALVAMT-----GDWYAIGYYLAALALIG 393
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 109/467 (23%), Positives = 173/467 (37%), Gaps = 103/467 (22%)
Query: 91 SIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPS------FAVLIIGRLLA 144
SI +L G L G +D LGRK + I+ L+P A L R
Sbjct: 66 SIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWL 125
Query: 145 GVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLG------------------ 186
GVGIG ++ + +E + RG++ + GIL G
Sbjct: 126 GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAA 185
Query: 187 -YISNYAFSRLPA-HINWRVMLGVGILPSVFIALALF---VIPESPRWLVMQGRIDEARL 241
++ S +PA WR+++G G +P+ LAL+ IPE+PR+ +
Sbjct: 186 ADEASCTGSCVPAVDYMWRILIGFGAVPA---LLALYFRLTIPETPRYTADVAK------ 236
Query: 242 VLSKTNESVKEVEERLAEIQVA--AGSDNAEKNEE-----KAVWREIINPSPAVRRMLI- 293
+ + + A +QV A D EK KA W + R
Sbjct: 237 ------DVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHL 290
Query: 294 ---TGC---------GIQCFQQITGIDATVYYSPTIFKGAGIK-------GNNELLAATV 334
G G+ Q++ I + + YSP + GN + A
Sbjct: 291 LGTAGSWFLLDIAFYGVNLNQKV--ILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGT 348
Query: 335 AVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILS 394
G+ T+F L+D +GRKP+ + +T+ L + L LAI
Sbjct: 349 VPGYWVTVF------LVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGF---LAIYV 399
Query: 395 VCGNVAFFSVGIGP--VCWVLSSEIFPLRLRAQA----SALGAVGSRVSSGAIAMSFLSV 448
+ F GP +++ E+FP R R+ A +A G G+ + +L+
Sbjct: 400 LA----QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF--LYLAQ 453
Query: 449 SHAIT--------VGGTFFVFSLISALSVAFVYKCVPETKGKSLEQI 487
T +G +F+L L + F +PETKGKSLE++
Sbjct: 454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 8/184 (4%)
Query: 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAII 349
L+ + F G + Y P + E G + L+ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 350 LIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPV 409
L D++GR+ LL + IG+ + L L L L +AL +L F P
Sbjct: 234 LSDRLGRRRLLLL--IGLLLAALGLLLLALAPSLALLLVALLLL------GFGLGFAFPA 285
Query: 410 CWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSV 469
L+SE+ P R AS L + + + GG F + + ++ L+
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345
Query: 470 AFVY 473
+
Sbjct: 346 LLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 84/417 (20%), Positives = 143/417 (34%), Gaps = 49/417 (11%)
Query: 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125
S A ++EDL ++ Q + S + G GG D G + T+A+ +++
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73
Query: 126 AIMTLAPSFAVLIIGRLLAGVGIGFGVMIA--PLYIAEISPSIARGSLTSFPEIFINLG- 182
+ A ++ L I R+L +G L +A P+ R + S LG
Sbjct: 74 GLQAFAGAYVSLYILRVL--LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131
Query: 183 ILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIA-LALFVIPESPRWLVMQGRIDEARL 241
I+ G + + H +W+ + + + L L IP+ P+
Sbjct: 132 IIGGPLVGWIL----IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ------------- 174
Query: 242 VLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCF 301
++ EE + ++ K +I RR+ G
Sbjct: 175 ------KAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKE-LLKDRRVWGLALGQFLV 227
Query: 302 QQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILI----DKVGRK 357
G + + PT G + L A +A I I +IL D + R+
Sbjct: 228 NIGLGF--FLTWFPTYLVQER--GLSILEAGFMAS--LPGIVGFIGMILGGRLSDLLLRR 281
Query: 358 PLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEI 417
V I + L F N A+ V + FF +G G + W L S+
Sbjct: 282 GKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA--LGFFGLGAGAIGWALISDN 339
Query: 418 FPLRLRAQA----SALGAVGSRVSS---GAIAMSFLSVSHAITVGGTFFVFSLISAL 467
P + ++LG +G V GAIA + S + A+ V + +S L
Sbjct: 340 APGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 48 AFFAS-LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD 106
AF A+ L +L +D +++ + + + +T V L+ I FG+L G D
Sbjct: 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD 72
Query: 107 VLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166
GR+ + + ++F AG AP + + I RL+ G+G+G + Y+ E P
Sbjct: 73 RYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132
Query: 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI---NWRVMLGVGILPSVFIALALFVI 223
R + I+ G +G + L + WR + + ILP +F I
Sbjct: 133 LRNKASGL---LIS-GYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNI 188
Query: 224 PESPRWLVMQGR 235
PE+ W
Sbjct: 189 PEAEDWKEKHAG 200
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 48 AFFASLNSVLL-GYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD 106
AF A+ LL G+D +++ + ++ + +T VQ L+ I FG L G D
Sbjct: 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD 80
Query: 107 VLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166
GR+ + ++ ++F G AP + L I RL+ G+G+ + Y+ E P
Sbjct: 81 RYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH 140
Query: 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFV---I 223
R + F ++G ++ + +S + WR + +GILP I AL++ +
Sbjct: 141 LRNKASGFLISGFSIGAVV---AAQVYSLVVPVWGWRALFFIGILP---IIFALWLRKNL 194
Query: 224 PESPRW 229
PE+ W
Sbjct: 195 PEAEDW 200
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLA 100
R +L F L+ G+++ ++++E L ++ + +L+ + + + G+L
Sbjct: 175 RLLLLLALAFFLLSFGY----YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230
Query: 101 GGKTSDVLGRKWTIALAAIVFQA-GAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYI 159
GG SD LGR+ + L ++ A G ++ LAPS A+L++ LL G G+GF
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 160 AEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219
+E++P ARG+ + F +LG LG L + + + ++ AL
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGP---LLAGLLLDTGGYGGVFLILAALALLAALL 347
Query: 220 LFVIP 224
L ++P
Sbjct: 348 LLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 85 VLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLA 144
+L+ ++ L S G +D GRK + + +F A+ L+ + VLII R L
Sbjct: 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQ 61
Query: 145 GVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRV 204
G G F ++ IA+I P RG I LG LLG L + WR
Sbjct: 62 GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPP---LGGVLAQFLGWRA 118
Query: 205 M-LGVGILPSVFIALALFVIPES 226
L + IL L F++PE+
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
Query: 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL 108
F A L V G+D ++ + IK DL +T+++ L I FG G +D
Sbjct: 21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF 80
Query: 109 GRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIAR 168
GRK + + + + G + LA +L + R + G+G+ A Y E P
Sbjct: 81 GRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK--- 137
Query: 169 GSLTSFPEIFINLGILLG-YISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227
L S F+ G +G I+ Y WR VG+LP + + PES
Sbjct: 138 -HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESK 196
Query: 228 RW 229
W
Sbjct: 197 EW 198
|
Length = 426 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 3/171 (1%)
Query: 19 EEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKI 78
S P +E + + + + L +L G+ + + +E L +
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL 234
Query: 79 TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALA---AIVFQAGAAIMTLAPSFA 135
+ + +L+G+ ++ G L G+ SD LGR+ + LA I+ G A+++L S
Sbjct: 235 SALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSL 294
Query: 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLG 186
L++ LL G G G +++++P RG+ + +LG LG
Sbjct: 295 WLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 12/186 (6%)
Query: 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGG 102
LA A FA +G V G + I DL ++E L+ ++ G+
Sbjct: 16 LALALAAFA------IGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLA 69
Query: 103 KTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEI 162
+ L R+ + +F + LAPSFAVL++ R LAG+ G IA A +
Sbjct: 70 LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARL 129
Query: 163 SPSIARGSLTSFPEIFINLGILLGYISNYAFSR-LPAHINWR-VMLGVGILPSVFIALAL 220
P RG + + G+ L + L WR L + +L + + L
Sbjct: 130 VPPGKRGRALA----LVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185
Query: 221 FVIPES 226
++P S
Sbjct: 186 KLLPPS 191
|
Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
Query: 95 LFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMI 154
L G+L GG+ +D +GRK + ++ +F + A F L++ RLL GVG+G G +
Sbjct: 64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG-GAL- 121
Query: 155 APLYIA---EISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV-GI 210
P IA E RG+ S + G L + WR + V G+
Sbjct: 122 -PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL---AAGDAAWRHIFYVGGV 177
Query: 211 LPSVFIALALFVIPESPRWLVMQGRIDEARLVL 243
P + + L + +PES + G + VL
Sbjct: 178 GPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVL 210
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
Query: 342 IFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAF 401
+ L+A L D+ GR+ +L + + + L L+ + + L + +
Sbjct: 49 LGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL-------WLLLVGRFL--LGL 99
Query: 402 FSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVF 461
+ P L +E FP + R +A L + G + + + ++ ++ F +
Sbjct: 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159
Query: 462 SLISALSVAFVYKCVP 477
+++ L + +
Sbjct: 160 AILGLLLALLLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 102 GKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGF-GVM 153
G SD +GR+ I + +F G + A S VLI + G+G G GVM
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVM 116
|
Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 94 SLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVM 153
G+L GG+ +D R+ IA ++ A A+ S A+ + L G +
Sbjct: 260 GFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQ 319
Query: 154 IAPLYIAEISPSIARGSLTSFPEIFINLGILLG-YISNYAFSRL-PAHINWRVMLGVGIL 211
+A ++P A S NLGI LG + L A W + +L
Sbjct: 320 GLQTRLARLAPD-AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW--VGAALLL 376
Query: 212 PSVFIALALF 221
++ +AL
Sbjct: 377 LALLLALLSA 386
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.79 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.77 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.72 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.64 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.57 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.46 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.46 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.45 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.44 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.43 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.43 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.42 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.4 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.39 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.36 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.33 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.32 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.32 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.31 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.31 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.3 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.3 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.29 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.29 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.29 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.28 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.28 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.28 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.27 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.25 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.25 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.23 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.23 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.23 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.22 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.21 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.2 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.2 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.18 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.17 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.16 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.15 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.12 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.11 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.1 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.08 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.06 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.02 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.01 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.99 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.97 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.92 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.9 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.88 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.88 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.87 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.84 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.8 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.7 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.68 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.61 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.6 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.57 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.53 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.52 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.5 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.47 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.46 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.45 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.45 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.39 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.38 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.37 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.34 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.32 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.3 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.19 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.18 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.11 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.06 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.96 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.95 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.92 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.77 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.76 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.65 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.4 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.31 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.31 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.25 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.1 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.97 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.87 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.82 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.71 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.69 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.05 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.84 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.62 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.37 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.21 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.96 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.86 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.6 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.55 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.83 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.73 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 92.28 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.23 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.86 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.24 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 84.59 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.74 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.36 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 80.07 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=328.52 Aligned_cols=448 Identities=28% Similarity=0.501 Sum_probs=369.1
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhh--------hccc--cChhH----HHHHHHHHHHHHHHHHHhHHHhhh
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIK--------EDLK--ITEVQ----QEVLVGILSIISLFGSLAGGKTSD 106 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~i~~~~~g~l~d 106 (514)
.++.........++.+-.+++...+++..+.+. +.+| .++++ .+.+.+++.+|.++|++..|.++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666888888888888766543 3344 34433 567888899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHH
Q 010273 107 VLGRKWTIALAAIVFQAGAAIMTLA---PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGI 183 (514)
Q Consensus 107 r~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 183 (514)
|+|||..+.++.++..++.++..++ +++++++++|++.|+..|........++.|..|++.||....+...+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 9999999999999998888887765 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHH-cCCHHHHHHHHHHhccChhhHHHHHHHHHH
Q 010273 184 LLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVM-QGRIDEARLVLSKTNESVKEVEERLAEIQV 262 (514)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
+++..++..- -+.+...|++.+.+..+++++..+...++||||||+.. +++.++|++.++..+...++.++..+..++
T Consensus 166 ll~~~~~l~~-ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 166 LLGQVLGLPS-LLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHccHH-hcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 9997776432 14456689999999999999999999999999999988 899999999999888776443333322222
Q ss_pred HhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHH
Q 010273 263 AAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTI 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
.++.+ ..++++.+++++++ .+.+|++....+.+....++.+.+.+.+|...++++.|.... .+.+.....++..++
T Consensus 245 ~~~~~--~~~~~~~sl~~~~~-~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~-~a~~an~~~g~v~~~ 320 (485)
T KOG0569|consen 245 IEEEE--LEKKKQISLRQLLK-NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE-EAQYANLGIGIVNLL 320 (485)
T ss_pred HHHhc--cccccCCcHHHHhc-CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHH
Confidence 11111 11235567888888 567788888888899999999999999999999999986655 455566668899999
Q ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCc-chhhHHHHHHHHHHHhhhccccccccceeeeeccChh
Q 010273 343 FILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG-QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR 421 (514)
Q Consensus 343 ~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 421 (514)
..+++.++.||+|||+.++.+..++.+..+++.......... .+..+..+...+.....+..|..|+.+-+.+|++|++
T Consensus 321 ~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~ 400 (485)
T KOG0569|consen 321 STLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS 400 (485)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc
Confidence 999999999999999999999999888888777766554443 2333344566777778889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHHHHHHHhhhc
Q 010273 422 LRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDE 494 (514)
Q Consensus 422 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
.|+.++++..+...+..++....+..+.+..|. ..|+++.+.+++..+..++.+||+|+|+..++.++.++.
T Consensus 401 ~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 401 ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999886 788999999999999999999999999998877665544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=358.89 Aligned_cols=429 Identities=22% Similarity=0.237 Sum_probs=320.6
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
.+..|.++++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45677777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC----
Q 010273 121 FQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL---- 196 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~---- 196 (514)
++++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876553210
Q ss_pred ------CCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhh----HHHH--HHHHHHHh
Q 010273 197 ------PAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKE----VEER--LAEIQVAA 264 (514)
Q Consensus 197 ------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~ 264 (514)
....+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.+++..+.+.. .... ...+....
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 12247999999988888888888889999999999999999999999887665421 1110 11111000
Q ss_pred cc------chhhh-------hh-------HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhc---
Q 010273 265 GS------DNAEK-------NE-------EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA--- 321 (514)
Q Consensus 265 ~~------~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 321 (514)
.. +.... .. ....+++++++ ..+++.+.. .+.++....+++++..|+|.++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~--~~~~~tl~l-~~~wf~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP--EVREITIKL-MGVWFTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc--cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00 01134555653 223333332 3344555567888889999875431
Q ss_pred ---------------------------------------CC---------C-----------------------------
Q 010273 322 ---------------------------------------GI---------K----------------------------- 324 (514)
Q Consensus 322 ---------------------------------------~~---------~----------------------------- 324 (514)
+. +
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00 0
Q ss_pred -------------------------------C---chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 325 -------------------------------G---NNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 325 -------------------------------~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
+ ............++.+++.+++|+++||+|||+++..+.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 001233345567889999999999999999999999888888877
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
++++.+.... ...++ ...+.+++..+..+..+++++|.+|++.|++++|+.+...++|++++|.+.+.+.+
T Consensus 639 ~ll~~~~~s~--------~~ll~-~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGNSE--------SAMIA-LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHccH--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666543321 11111 11222333334456777899999999999999999999999999999999998876
Q ss_pred hhhcCcEehhhHHHHHHHHHHhhhccccCCCCC
Q 010273 451 AITVGGTFFVFSLISALSVAFVYKCVPETKGKS 483 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (514)
. +...++++.+++.++++++. .++||++++.
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 4 34456777777766666554 4558888754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=343.45 Aligned_cols=437 Identities=21% Similarity=0.286 Sum_probs=310.8
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhcc-----ccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHH
Q 010273 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDL-----KITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWT 113 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 113 (514)
+..+.++.++.++.++.+.+++|....+.+.|.+.+++ +.++.+.+++.+.+.+++.++++++|+++||+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34456677778888899999999999999999887642 4566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHH
Q 010273 114 IALAAIVFQAGAAIMTLAPS------FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGY 187 (514)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 187 (514)
+..+.+++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++......+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865 789999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhccc-C-------------------CCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHH-HHHHHHHHh
Q 010273 188 ISNYAFSR-L-------------------PAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRID-EARLVLSKT 246 (514)
Q Consensus 188 ~~~~~~~~-~-------------------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~ 246 (514)
.++..+.. . ....+||++|.+.+++.++..+..+++||+|+|+..++|.+ ++.+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 88765321 1 01248999999998888888888889999999999888764 455555544
Q ss_pred ccChhhHH-HHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH-HHHHHHHHHHHhhhccceeeccchHHHhhhcCCC
Q 010273 247 NESVKEVE-ERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR-MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIK 324 (514)
Q Consensus 247 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (514)
.+.+...+ ++.++..+ +++..+.+++++++.....+. +..+......+.....++....|.|.++++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~ 321 (502)
T TIGR00887 249 LQVKIEAEPDEVEKAST-------AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYS 321 (502)
T ss_pred hccccccCcccccchhc-------cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCC
Confidence 33211110 01000000 001112346666542111111 2222222222223334456677889988877665
Q ss_pred CchHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHH
Q 010273 325 GNNEL-----------LAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAIL 393 (514)
Q Consensus 325 ~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
..... ........++.+++.+++++++||+|||+.+..+..+..+++.++........ . .....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~-- 396 (502)
T TIGR00887 322 PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS--T-HGFLA-- 396 (502)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc--h-hHHHH--
Confidence 43110 11223344566778899999999999999988877777666655554321100 0 01111
Q ss_pred HHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hcCcEehhhHH
Q 010273 394 SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI----------TVGGTFFVFSL 463 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----------g~~~~~~~~~~ 463 (514)
.......++..+..+..+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.+.. ++...++++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (502)
T TIGR00887 397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL 476 (502)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence 11111223344555677788899999999999999999999999999999999988743 33456777777
Q ss_pred HHHHHHHHhhhccccCCCCCHHHHH
Q 010273 464 ISALSVAFVYKCVPETKGKSLEQIE 488 (514)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+++++.+. ++++||+++++.+|.+
T Consensus 477 ~~~~~~i~-~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 477 FMFLGILF-TLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHH-heEeccCCCCCHHhhh
Confidence 77776655 4677999998876543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=335.26 Aligned_cols=441 Identities=36% Similarity=0.660 Sum_probs=325.2
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccC--------hhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKIT--------EVQQEVLVGILSIISLFGSLAGGKTSDVLGRK 111 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr 111 (514)
.+++.+...+++.++.+...++...+++..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3344455555666677788889999999999998888877 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHH
Q 010273 112 WTIALAAIVFQAGAAIMTLAP---SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYI 188 (514)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 188 (514)
++++.+.++++++.+++.+.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999996643 45689999999999999999999999999999999999999999999999999999
Q ss_pred Hh---hhcccCCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhc
Q 010273 189 SN---YAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAG 265 (514)
Q Consensus 189 ~~---~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (514)
++ .. ..+..+||+.|++.++..++..+..+++||+|+++..+++.+++.+...+....+...............
T Consensus 182 ~~~~~~~---~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 182 FGSGKVS---LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHhhc---CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 98 54 4456799999999777777776677889999988877777776655554433222111111110000000
Q ss_pred cchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH
Q 010273 266 SDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFIL 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (514)
....+.+..+..+++.++..+..+.+.++...+..+..........++.|.++++.+.+. ...+.......++.+++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 337 (481)
T TIGR00879 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTF 337 (481)
T ss_pred HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHH
Confidence 000001111111334443222234555555556666666666677788898888877666 4556667778888999999
Q ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcc--hhhHHHHHHHHHHHhhhccccccccceeeeeccChhhh
Q 010273 346 IAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQ--LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLR 423 (514)
Q Consensus 346 ~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 423 (514)
+.|+++||++||+.+..+.++..++.+.+........+.. ......+........++..+..+....+..|.+|++.|
T Consensus 338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 9999999999999988887776666665553222111110 00122222233333444455556777888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCH
Q 010273 424 AQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSL 484 (514)
Q Consensus 424 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
++++|+.+...+++++++|.+.+.+.+..++...|++.+++++++.++.+++.+|+++++.
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 9999999999999999999999999999899999999999988888887777787776544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=331.09 Aligned_cols=435 Identities=31% Similarity=0.567 Sum_probs=317.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhcc--------ccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDL--------KITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWT 113 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 113 (514)
+....+..++.++.+.++++...+++..|.+++++ +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44555666777788999999999999999998877 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHH
Q 010273 114 IALAAIVFQAGAAIMTLA------------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL 181 (514)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 181 (514)
++.+.++++++.++++++ ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999999888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccc-----CCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHH
Q 010273 182 GILLGYISNYAFSR-----LPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEER 256 (514)
Q Consensus 182 g~~~g~~~~~~~~~-----~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (514)
|.++++.+++.+.. ..+..+||+.|++.+++.++..+..+++||+|+|+..+++.|++.+..++..+..+.. ..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT-QA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH-HH
Confidence 99998887765431 2245799999999888777777677889999999888888888776666554332211 11
Q ss_pred HHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHH
Q 010273 257 LAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAV 336 (514)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (514)
.++..... + .++...+..+. ......+.......+....+.+...++.|.+.++.+.+.. .........
T Consensus 247 ~~~~~~~~------~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~ 315 (479)
T PRK10077 247 LQEIKHSL------D-HGRKTGGKLLM---FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD-IALLQTIIV 315 (479)
T ss_pred HHHHHHHH------H-Hhhhhhhhhcc---hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc-hHHHHHHHH
Confidence 11111000 0 00000011111 1111222222233344444455566777888877765543 344555667
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeee
Q 010273 337 GFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSE 416 (514)
Q Consensus 337 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
++..+++.+++++++||+|||+.+..+.++..++.+++...... + ... .......+.....+.....|..+.++.|
T Consensus 316 ~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 391 (479)
T PRK10077 316 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--Q-APG-IVALLSMLFYVAAFAMSWGPVCWVLLSE 391 (479)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--C-ccc-HHHHHHHHHHHHHHhccccchhHHHhHh
Confidence 78889999999999999999999998888888777666543321 1 111 1122222222233333445677889999
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHHHHHHH
Q 010273 417 IFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS------HAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEML 490 (514)
Q Consensus 417 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
.+|++.|++++|+.+...+++.++++.+++.+. +..++...|++.+++++++.++.+.+.||+|+++.++.++.
T Consensus 392 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 392 IFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999999999999999999999999877776544 46677777888888877777777777899988887766555
Q ss_pred hh
Q 010273 491 FQ 492 (514)
Q Consensus 491 ~~ 492 (514)
.+
T Consensus 472 ~~ 473 (479)
T PRK10077 472 WE 473 (479)
T ss_pred Hh
Confidence 43
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=318.79 Aligned_cols=409 Identities=15% Similarity=0.097 Sum_probs=320.9
Q ss_pred CCCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHH
Q 010273 38 GSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALA 117 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 117 (514)
+..+++++.+++.+++++...++.+..++.+.|.+.+|.++|.+|+|++.+.+++.|+++..+.|.++||.++|..+..+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHh--hhccc
Q 010273 118 AIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISN--YAFSR 195 (514)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~~~~ 195 (514)
+++.++..++++++++.+.+.++.+++|..+|..+|.+...+..|++++|||+..++++.+.++|..+.|++. +.
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~--- 177 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF--- 177 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888 55
Q ss_pred CCCCccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 196 LPAHINWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 196 ~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
+..+.+||..|++.++++++..++ ++..+|+|+-.-. .+.|+ ...+..+. ..++++++
T Consensus 178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~-----------------~~~d~~e~---~~~~~~~~ 236 (448)
T COG2271 178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEE-----------------YRGDPLEI---YEEEKENE 236 (448)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHH-----------------hhcCchhh---hhhhccCC
Confidence 445679999999988888776665 6667888841100 00000 00000000 00111111
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
..+.++++. ...++++.+|.+++..++....-+++..|.|.|+.+..+.+...+......+-+++++|.+++||++||+
T Consensus 237 ~ls~~~i~~-~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl 315 (448)
T COG2271 237 GLTAWQIFV-KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL 315 (448)
T ss_pred CccHHHHHH-HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 133444444 4678899999999999999999999999999999998888888888888889999999999999999997
Q ss_pred --CCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHH
Q 010273 355 --GRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAV 432 (514)
Q Consensus 355 --~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (514)
|||.+..+.+.+....+++..... + .. ............+++..+..-+.-..+.|..|++..|++.|+...
T Consensus 316 fkgrR~p~~~i~~~~i~~~~~~~w~~---~--~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl 389 (448)
T COG2271 316 FKGRRGPMALIFMLLITASLVLYWLA---P--NG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL 389 (448)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcC---C--Cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence 566555443333332222221111 1 11 123333344444555555544555668899999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccc
Q 010273 433 GSRV-SSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVP 477 (514)
Q Consensus 433 ~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (514)
++++ |...+....|.+.|.+||...|.++.+.++++.+++.....
T Consensus 390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999 88888889999999999999998888888877777555443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=321.48 Aligned_cols=446 Identities=41% Similarity=0.711 Sum_probs=355.8
Q ss_pred hhhHHHHHHHHHhhhhhhhh--hhhcchhHhhhhhcc-----ccCh--hHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHH
Q 010273 42 KYVLACAFFASLNSVLLGYD--VGVMSGAIIFIKEDL-----KITE--VQQEVLVGILSIISLFGSLAGGKTSDVLGRKW 112 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~-----~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 112 (514)
...........++.+..+++ ....++....+.++. ..+. ++.+|+.+.+.++..++++++|+++|++|||+
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444455556666666665 566677777777643 2222 35599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 113 TIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
.++++.+++.++.+++++++|+++++++|+++|+|.|....+...+++|..|++.||...+..+....+|..++..++..
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777766
Q ss_pred cccCCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhcc-ChhhHHHHHHHHHHHhccchhhh
Q 010273 193 FSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNE-SVKEVEERLAEIQVAAGSDNAEK 271 (514)
Q Consensus 193 ~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (514)
..+. . .+||..+.+..+++++..+..+++||+|+|+..+++.+++++.+..... ..++.+.+.++++.....+ ...
T Consensus 201 ~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~-~~~ 277 (513)
T KOG0254|consen 201 TSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVE-AEV 277 (513)
T ss_pred hccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-hhc
Confidence 4432 1 5899999999999998888888999999999999999999999998887 3444444444443111100 011
Q ss_pred hhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 272 NEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILI 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 351 (514)
...+..+.++++ +..+++.++.+.+..+.+..+.+...+|.+.+++..+..+.. .......++..+++..++.++.
T Consensus 278 ~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lv 353 (513)
T KOG0254|consen 278 AEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLV 353 (513)
T ss_pred ccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 111113555554 456777888888999999999999999999999999887664 4455567788888889999999
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCc----chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 352 DKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG----QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 352 d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
||+|||+.++.+...+.++.+++.......... ....+..+...+.....+..+..|+.+.+.+|.+|.+.|+.+.
T Consensus 354 d~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~ 433 (513)
T KOG0254|consen 354 DRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGA 433 (513)
T ss_pred HHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhH
Confidence 999999999999999999999888777654432 2334556666667777888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHH-HhhhccccCCCCCHHHHHHHhhhc
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVA-FVYKCVPETKGKSLEQIEMLFQDE 494 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
++......+...+....+....+..+....|..++.++.+... ..++++||+|++..++.++...+.
T Consensus 434 s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 434 SLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 9999999998888777766666554434667777777777777 678889999999998887765444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=297.14 Aligned_cols=377 Identities=19% Similarity=0.135 Sum_probs=300.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH
Q 010273 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 122 (514)
..+..++.+.++.|..+.+.......+|++.+|+|+|..+.|++.|.|.+++.++.++...+.||+.||++++..+.++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34445566677778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 123 AGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.+ +.+..||
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~---ig~~~GW 166 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF---LGQLFGW 166 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH---HHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 5557899
Q ss_pred hhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 203 RVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 203 r~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
|+.|++.+..+++..+. +..+| |+. ..++. +.+.++.
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~-------------------------------------~~~~~---~~~~~~~ 204 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSE-------------------------------------ISGSL---PGPLRTL 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Ccc-------------------------------------CCCCC---CcchhHH
Confidence 99999988888776665 67788 210 00011 1111111
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 361 (514)
.+.+|++.++......++.+.+.+..++|...++++..+.+.....+..+.++++.++|..++|++.|| +.|+.+.
T Consensus 205 ---~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~ 280 (394)
T COG2814 205 ---LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI 280 (394)
T ss_pred ---HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH
Confidence 124455566666677777777888888899999998888778788888888999999999999999999 8888888
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 362 VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
....+..+....+.+.... . +..+..... .++..............+. -++.+..+.+++....|+|..+|
T Consensus 281 ~~~~l~a~~~l~l~~~~~~-----~--~~~~~~~~~-wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~G 351 (394)
T COG2814 281 AALLLLALALLALTFTGAS-----P--ALALALLFL-WGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALG 351 (394)
T ss_pred HHHHHHHHHHHHHHHhcch-----H--HHHHHHHHH-HHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHH
Confidence 7777777766665544331 1 222222222 2222222222233334443 35788999999999999999999
Q ss_pred HHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccc
Q 010273 442 AMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVP 477 (514)
Q Consensus 442 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (514)
..+.|.+.|+.|+....++.+.+.+++.++.....+
T Consensus 352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888888888887777555433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=324.42 Aligned_cols=405 Identities=12% Similarity=-0.002 Sum_probs=280.7
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAI 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 119 (514)
.++..+.++.++++.++..++++..+++..|.+.+|+|++..+.|++.+++.+++++++++.|+++||+|||+++..+.+
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 34446667778888888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh-----hhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc
Q 010273 120 VFQAGAAIMTL-----APSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS 194 (514)
Q Consensus 120 ~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~ 194 (514)
+++++.++.++ ++|++.+++.|+++|++.+...|...+++.||+|+++|+++++++..+.++|.++++++...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88888777665 5899999999999999999999999999999999999999999999999999999988876532
Q ss_pred cCCCCccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhh
Q 010273 195 RLPAHINWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNE 273 (514)
Q Consensus 195 ~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (514)
......+||..|.+.+++.++..+. +++.+++|+..... +.++ . ..+.... + +. . .+.++..
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~~~-~-------~~-~-~~~~~~~ 245 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPISE-E-------DK-E-TESTDMT 245 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCccch-h-------hh-c-cccccCc
Confidence 2111126999988877766665554 44567766411000 0000 0 0000000 0 00 0 0000000
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
....+. +..++++.+|...+..++..........|.|.|+++..+.+....+.......++.+++.++.|+++||
T Consensus 246 ~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr 320 (467)
T PRK09556 246 KWQIFV-----EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL 320 (467)
T ss_pred HHHHHH-----HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 113344556655555555555555677899999977655555566666777888999999999999999
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHH
Q 010273 354 VGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVG 433 (514)
Q Consensus 354 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 433 (514)
++||+.......+..++...+.. .. .+ .. ....+..+ ..+.+..+..........|.+|++.+|++.|+.+..
T Consensus 321 ~g~r~~~~~~~~~~~~~~~~~~~--~~-~~-~~--~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 321 ANGRRALVACIALALIIFTLGVY--QH-AT-SE--YMYLASLF-ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HCCCchHHHHHHHHHHHHHHHHH--Hh-cC-cH--HHHHHHHH-HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 99988766544333332222111 11 11 11 11111121 122222222212224556999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHh------------hhhcCcEehhhHHHHHHHHHHhh
Q 010273 434 SRV-SSGAIAMSFLSVSH------------AITVGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 434 ~~~-g~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 473 (514)
+++ |++++|.+.|.+.| ..+|+..|+++.++.+++.+...
T Consensus 394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 997 66999999999999 56788888887777777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=310.54 Aligned_cols=396 Identities=14% Similarity=0.128 Sum_probs=277.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF 121 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (514)
|.+|.+++++++..+++++|+..++...|.+++|+|+|..+.|++.+++.+++++++++.|+++||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 44566777788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc---CCC
Q 010273 122 QAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR---LPA 198 (514)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~---~~~ 198 (514)
+++++++++++|++.+++.|+++|++.+...|....++.|++|+++|+++++++..+.++|.++++++++.+.. ..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532 123
Q ss_pred CccchhhHhhchHHHHHHHH-HHhhccCChhH---HHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 199 HINWRVMLGVGILPSVFIAL-ALFVIPESPRW---LVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 199 ~~~Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
..|||+.|++.+++.++..+ .++++||+|+. +.+ ++.+...+..+..... ....+..........
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 232 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLT-------LEQPEGAFAHAAMPQ 232 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccc-------ccccccccccccccH
Confidence 46999999998777765544 46678898842 111 1111000000000000 000000000000011
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAG-IKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
+..++++++ +.++......++.....+.+..|.|.++++.+ +.+....+.......++.+++.++.|+++||
T Consensus 233 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr 305 (412)
T TIGR02332 233 RSMLREIFT-------PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR 305 (412)
T ss_pred HHHHHHhcC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 122333322 22344444444455556667789999998753 3444566666777889999999999999999
Q ss_pred cCCchhhh-hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHH
Q 010273 354 VGRKPLLY-VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAV 432 (514)
Q Consensus 354 ~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (514)
+++|+... ...+...++. ++.. . ... .......+ ... ........+..+....|.+|++.|+++.|+.+.
T Consensus 306 ~~~r~~~~~~~~~~~~~~~-~~~~--~--~~~-~~~~~~~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~ 376 (412)
T TIGR02332 306 LKERKHHTALPYLFAAAGW-LLAS--A--TDH-NLIQLLGI-IMA--SMGSFSAMAIFWTTPDQSISLQARAIAIAVINA 376 (412)
T ss_pred cCccHHHHHHHHHHHHHHH-HHHH--h--cCC-HHHHHHHH-HHH--HHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence 99776533 3332332222 1111 1 111 11111111 111 111112223344556778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHH
Q 010273 433 GSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLI 464 (514)
Q Consensus 433 ~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 464 (514)
.+++|++++|.+.|.+.+..| |...+++.+++
T Consensus 377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999875 77666655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=315.08 Aligned_cols=399 Identities=16% Similarity=0.193 Sum_probs=265.6
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhH-HHH-----HHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQ-QEV-----LVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++..+.++.+++++|...++...|.+.++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456677788999999999999999999999754322 122 25778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHH--------HHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 121 FQAGAAIMTLAPSFAV--------LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
++++++++++++|+++ +++.|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+|+.+...
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 88999999999999999999999999999999999999998888888888766544
Q ss_pred ccc-C----CCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccc
Q 010273 193 FSR-L----PAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD 267 (514)
Q Consensus 193 ~~~-~----~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (514)
+.. + ..++|||+.|++.+++.++..++...+||+|+|...+++.++..+ + .
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------------~--------~ 232 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------------E--------G 232 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------------c--------c
Confidence 321 1 125799999999877666655566778999986533221111000 0 0
Q ss_pred hhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010273 268 NAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
..+.++.+++++++. . ++...... ...+.....++....|.|.++++..+.+............++.+++.++.
T Consensus 233 --~~~~~~~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 306 (490)
T PRK10642 233 --LQDGPKVSFKEIATK--H-WRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVM 306 (490)
T ss_pred --ccccccCCHHHHHHH--h-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011123333331 1 11112111 11222233455666789999876533444445555566678888999999
Q ss_pred HHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 348 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
|+++||+|||+.+..+.++..++......... .+ .. .......+.. ++......+....+..|.+|++.|+++.
T Consensus 307 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~~~-g~~~~~~~g~~~~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 307 GLLSDRFGRRPFVILGSVALFVLAIPAFILIN--SN-VI--GLIFAGLLML-AVILNCFTGVMASTLPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh--CC-CH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence 99999999999877766543332222111111 11 11 1111111111 1111111123345567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhccccCCCC
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCVPETKGK 482 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (514)
|+.+....+++.++|.+.+.+.+..+ +..++++..+.++++.+. .++.||++++
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 98766677888899999999887654 334444444444444444 3445776554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=315.98 Aligned_cols=405 Identities=13% Similarity=0.096 Sum_probs=279.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH
Q 010273 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 122 (514)
.++.+.....+..+..+++...++..+|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 34445555666677777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 123 AGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+ .+..+|
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l---~~~~gw 176 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI---ALHYGW 176 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998884 346799
Q ss_pred hhhHhhchHHHHHHH-HHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 203 RVMLGVGILPSVFIA-LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 203 r~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
|+.|++.++..++.. +..++++|+|++.......++.. + . .+. .+ +.++++.++++.
T Consensus 177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~---~-~~~------~~-~~~~~~~~~~~~ 234 (434)
T PRK11663 177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------D---A-LEL------AQ-QQEGAGLSRKEI 234 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------c---c-ccc------ch-hccccCCChhhh
Confidence 999999777665543 34556788775321000000000 0 0 000 00 000000011111
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV--GRKPL 359 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~r~~ 359 (514)
++ ...++++.++.+....+........+..|.|.|+.+..+.+....+.......++.+++.++.|+++||+ ++|+.
T Consensus 235 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~ 313 (434)
T PRK11663 235 LT-KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP 313 (434)
T ss_pred HH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH
Confidence 11 0122334444444444444444455667889999655445555566666668899999999999999998 33333
Q ss_pred h-hhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHH
Q 010273 360 L-YVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSS 438 (514)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 438 (514)
. ....+...+....+.... .... ..... .....+++..+..........|.+|++.|+++.|+.+...++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 386 (434)
T PRK11663 314 MNLIFAAGILLSVGSLWLMP----FASY--VMQAA-CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcc----cccH--HHHHH-HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH
Confidence 2 222222222221111111 1111 11111 11111222222222223456788999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 439 GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 439 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+++|.+.|.+.|..|+...|.+.+++.++..+..+...++++
T Consensus 387 ~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 387 ALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999988888888887777766555444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=301.89 Aligned_cols=381 Identities=16% Similarity=0.173 Sum_probs=250.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccc---cChhHHHHHHHHH---HHHHHHHHHhHHHhhhhhhhHHHHHHH
Q 010273 44 VLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLK---ITEVQQEVLVGIL---SIISLFGSLAGGKTSDVLGRKWTIALA 117 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s~~---~~~~~i~~~~~g~l~dr~Grr~~~~~~ 117 (514)
++..+..++++.+++++|...++...|.+.++++ .+..+.+...+.+ +++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4445566777888999999999999999999985 5555554444444 445559999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHH
Q 010273 118 AIVFQAGAAIMTLAPSFA--------VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYIS 189 (514)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 189 (514)
.++++++++++++++++. .+++.|+++|++.|+.++...+++.|++|+++|+++.++...+...|..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 588999999999999999999999999999999999999988888888888776
Q ss_pred hhhcccCC-----CCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHh
Q 010273 190 NYAFSRLP-----AHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAA 264 (514)
Q Consensus 190 ~~~~~~~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (514)
...+..+. ...|||+.|++.+++.++...+...+||+|++.. +
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~------------------------ 227 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R------------------------ 227 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h------------------------
Confidence 65543221 2469999999988877776655666788764210 0
Q ss_pred ccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH-HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q 010273 265 GSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ-CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIF 343 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+.+++.++++++++ +..+..... .+.....++....|.|.++++..+.+....+.......+...++
T Consensus 228 ------~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~ 295 (432)
T PRK10406 228 ------ALKEAGSLKGLWRN------RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLI 295 (432)
T ss_pred ------hhcccccHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00001123334331 111211111 11222334456678999887654444445555555556677788
Q ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhh
Q 010273 344 ILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLR 423 (514)
Q Consensus 344 ~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 423 (514)
.++.|+++||++||+.+....++..+....+..... ..........+..... +......+..+.+.+|.+|++.|
T Consensus 296 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~fp~~~r 370 (432)
T PRK10406 296 QPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ--NVSSPYAAFGLVMCAL---LIVSFYTSISGILKAEMFPAQVR 370 (432)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCcc
Confidence 889999999999998776655443332221111111 1111111111111111 11111113445678899999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhh
Q 010273 424 AQASALGAVGSRV-SSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 424 ~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 474 (514)
+++.|+.+..+++ .+...|.+.+. .+..| +...++..+++.+++.+..++
T Consensus 371 ~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 371 ALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred chhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999887765 34456776664 45555 333444444555555444333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=297.81 Aligned_cols=372 Identities=15% Similarity=0.068 Sum_probs=262.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHH
Q 010273 45 LACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAG 124 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 124 (514)
|..++.+.+..+....+.....+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33333334433443334445566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchh
Q 010273 125 AAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRV 204 (514)
Q Consensus 125 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~ 204 (514)
++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ .++.|||+
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l---~~~~gw~~ 164 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI---GQYLGWRT 164 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH---HHHhcHHH
Confidence 999999999999999999999999988899999999999999999999999999999999999999884 45679999
Q ss_pred hHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhC
Q 010273 205 MLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIIN 283 (514)
Q Consensus 205 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.|++.+++.++..+. +..+||.|+ ++ ++.....++.++
T Consensus 165 ~f~~~~~~~~l~~~~~~~~~~~~~~----~~-------------------------------------~~~~~~~~~~~~ 203 (390)
T PRK03545 165 TFLAIGGGALITLLLLIKLLPLLPS----EH-------------------------------------SGSLKSLPLLFR 203 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC----CC-------------------------------------cchHHHHHHHHh
Confidence 999987776665544 445666542 00 000011223333
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhh
Q 010273 284 PSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVS 363 (514)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~ 363 (514)
++. ++......+...........+.+.++++..+.+....+.......++.+++.++.|++.||+++|... .+
T Consensus 204 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~ 276 (390)
T PRK03545 204 RPA------LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IA 276 (390)
T ss_pred CcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HH
Confidence 221 11111111111111222334666677665445555666666768889999999999999999887643 33
Q ss_pred hHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 364 TIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAM 443 (514)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 443 (514)
..+..++...+..... +. +.. .......+.......+.......+..| +.+++++|+.+...++|..+||.
T Consensus 277 ~~~~~~~~~~l~~~~~-----~~--~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~ 347 (390)
T PRK03545 277 IALLLVCLLLLLPAAN-----SE--WHL-SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGAL 347 (390)
T ss_pred HHHHHHHHHHHHHHhc-----hH--HHH-HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322211111 11 111 111222222222223334455666655 68899999999999999999999
Q ss_pred HHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 444 SFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 444 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
+.|.+.+..|++..++..+++.+++.+..+...
T Consensus 348 ~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 348 LGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999888888888777765544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=268.56 Aligned_cols=425 Identities=20% Similarity=0.227 Sum_probs=311.5
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAI 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 119 (514)
..+.+|...+....+...+.+.....+.+.|.+.+.+|.+..|..++......|..+++..+|.++|++|||+.+....+
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 34566777777777777777777777888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC
Q 010273 120 VFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH 199 (514)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 199 (514)
..++...+.++++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++.. ...+
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~---vm~~ 226 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWG---VMSN 226 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHH---HHHh
Confidence 9999999999999999999999999999998 899999999999999998887777 9999999999988877 4456
Q ss_pred ccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhH----------HHHHHHHH-HHhccch
Q 010273 200 INWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEV----------EERLAEIQ-VAAGSDN 268 (514)
Q Consensus 200 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~ 268 (514)
.||||.......+..+.+.+.+++||||||...+++.++|.+.++++.+.|... ..+.++.. +-.+...
T Consensus 227 ~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~ 306 (528)
T KOG0253|consen 227 FGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS 306 (528)
T ss_pred hhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence 799999988888888888889999999999999999999999988877654321 00111000 0000001
Q ss_pred hhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhc--------------------CCCCchH
Q 010273 269 AEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA--------------------GIKGNNE 328 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 328 (514)
...++......+++.+.-.+++...|..++...+ .+++.....+..++.. ..+.. .
T Consensus 307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnaf---syyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~-~ 382 (528)
T KOG0253|consen 307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAF---SYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVA-K 382 (528)
T ss_pred ccccccccchHhhcChHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccch-h
Confidence 1112233445566653222233333332222222 2222222222222211 11111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhcccccc
Q 010273 329 LLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGP 408 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
-..-.....+..+.|.++.+++.||+|||+.+...+++..++.+.+...... .....+. +..-++..+.+.
T Consensus 383 dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r----n~~tvll-----f~arafisg~fq 453 (528)
T KOG0253|consen 383 DYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR----NAYTVLL-----FTARAFISGAFQ 453 (528)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc----chhHHHH-----HHHHHHHhchhe
Confidence 2233455678899999999999999999999999888877776665544321 1111111 222233444456
Q ss_pred ccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCH
Q 010273 409 VCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSL 484 (514)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
+.|.|..|++|+..|+++.|.+....++|+++.|.+. +........+..+.+++++++.++..++--|+|+|..
T Consensus 454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 8899999999999999999999999999999999888 3333344467788888888888887777778888753
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=312.15 Aligned_cols=389 Identities=21% Similarity=0.291 Sum_probs=280.0
Q ss_pred hhHhhhhhccccC---hhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010273 67 GAIIFIKEDLKIT---EVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLL 143 (514)
Q Consensus 67 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 143 (514)
+..|.+.+|+|++ +.+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhc
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVI 223 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 223 (514)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+..+++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999887632 49999999888888777777889
Q ss_pred cCChhHHHHcCCHHHHHHHHHHhccChhhHH-HHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Q 010273 224 PESPRWLVMQGRIDEARLVLSKTNESVKEVE-ERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQ 302 (514)
Q Consensus 224 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
||+|+|+..+++.+++.+.+++..+.+.... .+..+....+ ..+.++++..++++++.+ .++...+.... ..+.
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~~ 338 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK---DLSSSKKQYSFLDLFRTP-NLRKTTLCLMM-LWFT 338 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh---hhhhccCCCcHHHHhCCh-HHHHHHHHHHH-HHHH
Confidence 9999999999999998887765543322110 0000000000 000111123456666633 33333222221 1221
Q ss_pred hhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhc
Q 010273 303 QITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLG 382 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (514)
....++. .+.+....+.. ........++..+++.++.+++.||+|||+.+..+.++.+++++++.....
T Consensus 339 ~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~--- 407 (505)
T TIGR00898 339 TAFSYYG----LVLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV--- 407 (505)
T ss_pred HHHHHHH----HhccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 1111212 22222233222 123344466788899999999999999999998887777776665543321
Q ss_pred CcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhH
Q 010273 383 NGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFS 462 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 462 (514)
... .. .........++..+..+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ + +..+...++.+++
T Consensus 408 -~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~ 481 (505)
T TIGR00898 408 -DLY--FL-RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFG 481 (505)
T ss_pred -Cch--HH-HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHH
Confidence 111 11 1111112222222334566788999999999999999999999999999999998 3 4445566777777
Q ss_pred HHHHHHHHHhhhccccCCCCCH
Q 010273 463 LISALSVAFVYKCVPETKGKSL 484 (514)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
++.+++.++ ..++||+++++.
T Consensus 482 ~~~~~~~~~-~~~lpet~~~~l 502 (505)
T TIGR00898 482 GLALLAGIL-TLFLPETKGVPL 502 (505)
T ss_pred HHHHHHHHH-HHcCcCCCCCCC
Confidence 777776665 456688887654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=296.84 Aligned_cols=391 Identities=16% Similarity=0.137 Sum_probs=273.4
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++++|..+..++++.+.++++....++..|.+++++|+++.+.+++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44566667788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc
Q 010273 121 FQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI 200 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 200 (514)
.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.... ..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~~ 165 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-GD 165 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988754321 12
Q ss_pred cchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Q 010273 201 NWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWRE 280 (514)
Q Consensus 201 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
+||+.|++.++..++..+....+||++++...+++.++..+..++..+..... ....++.....+.
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 231 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI--------------ANIVMTLAAAMVQ 231 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh--------------hhhhhhhhHHhhh
Confidence 59999998777666666666678888754322221111111111000000000 0000000000111
Q ss_pred hhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 010273 281 IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLL 360 (514)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~ 360 (514)
.. ..+...+...................+.|.++.+..+.+....+.......++.+++.++.+++.||++||+.+
T Consensus 232 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~ 307 (405)
T TIGR00891 232 SA----GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY 307 (405)
T ss_pred hh----hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 00 00111111111111111222234445678887665445555666667778899999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHH
Q 010273 361 YVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 440 (514)
..+.+...+........ .. .. +...+ .....++...+..+....+..|.+|++.|++++|+.+...++++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~----~~-~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 379 (405)
T TIGR00891 308 VCSLLAGQLLIIPVFAI----GA-NV--AVLGL-GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL 379 (405)
T ss_pred HHHHHHHHHHHHHHHHh----CC-ch--HHHHH-HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH
Confidence 77665443322221111 11 11 11111 1122222333344556677889999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-cCcEe
Q 010273 441 IAMSFLSVSHAIT-VGGTF 458 (514)
Q Consensus 441 ~~~~~~~~~~~~g-~~~~~ 458 (514)
+|.+.|.+.|..| |+..+
T Consensus 380 g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 380 APIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHHHHHHhccccchhH
Confidence 9999999999988 65433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.62 Aligned_cols=375 Identities=18% Similarity=0.207 Sum_probs=265.8
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF 121 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (514)
+.++..+..+.++.+.++++.....+..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34444556777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc
Q 010273 122 QAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN 201 (514)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 201 (514)
+++.++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+. +.+..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~---l~~~~~ 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS---FAEAYG 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH---HcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877 445679
Q ss_pred chhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 202 WRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
||+.|++..+..++........||++++...+.+ +.. +......+..+..+++.
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~--------------~~~~~~~~~~~~~~~~~ 224 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKG--------------KHSQSAWSVFSLSMKGL 224 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccc--------------cccccchhhhhHHHHHH
Confidence 9999998655444433333345665543211000 000 00000001111234444
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 361 (514)
++.+.. +.. .......+..+........+.|.++++.+.+ ....+.......++.+++.++.|++.||++||+.+.
T Consensus 225 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~ 300 (426)
T PRK12307 225 FNRAQF-PLT--LCVFIVLFSIFGANWPIFGLLPTYLAGEGFD-TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFS 300 (426)
T ss_pred HhhchH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 442221 111 1111111222222233456788888887544 444555566677899999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 362 VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
.+.++..+....+.... .... .. ........+....+..+....++.|.+|++.|++++|+.+...++++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~----~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 301 IGLLMSFLFIFPLFRIP----QDNY--LL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred HHHHHHHHHHHHHHHHc----cccH--HH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHH
Confidence 77665554433332211 1111 11 11111111122222333445667899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCc
Q 010273 442 AMSFLSVSHAITVGG 456 (514)
Q Consensus 442 ~~~~~~~~~~~g~~~ 456 (514)
|.+.|.+.+..|+..
T Consensus 374 p~~~g~l~~~~g~~~ 388 (426)
T PRK12307 374 SMAATWLGITMGLGA 388 (426)
T ss_pred HHHHHHHHHcccHHH
Confidence 999999999887644
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=303.56 Aligned_cols=415 Identities=16% Similarity=0.148 Sum_probs=276.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF 121 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (514)
++++..+..++++.+++.++....++..|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34555667777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc
Q 010273 122 QAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN 201 (514)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 201 (514)
+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++. +.++.+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~ 172 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL---VVPVWG 172 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 445689
Q ss_pred chhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhH-HHHHHHHHHHhccchhhhhhHHHHH--
Q 010273 202 WRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEV-EERLAEIQVAAGSDNAEKNEEKAVW-- 278 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 278 (514)
||+.|++..+..++.++....+||++++...+++.++.++..+.....+... .............. .........+
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 251 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWF-CFAGNLQNAAIV 251 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHhhhcchhHH
Confidence 9999988665555544445567887654322211111111111000000000 00000000000000 0000000000
Q ss_pred -----------HHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010273 279 -----------REIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347 (514)
Q Consensus 279 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
..........+.+....+....+...........+.|.|+++..+.+....+.......++.+++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 331 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG 331 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000011111111122222222222345678999964444455566677777889999999999
Q ss_pred HHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 348 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
|+++||++||+.+..+..+..+..+.+.... ... .+. ........++...+..+....+..|.+|++.|++++
T Consensus 332 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 332 GFLGDWLGTRKAYVCSLLISQLLIIPVFAIG----GAN--VWV-LGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----ccH--HHH-HHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence 9999999999887776555444433222111 111 111 111111112222233345556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHH
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 467 (514)
|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus 405 ~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 405 GFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998887666555444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=298.74 Aligned_cols=381 Identities=18% Similarity=0.198 Sum_probs=276.8
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF 121 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (514)
++.|.++.++++..+.++++....++..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 36677778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc
Q 010273 122 QAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN 201 (514)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 201 (514)
+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++.. +.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ 167 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL---AAGDAA 167 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877 445679
Q ss_pred chhhHhhchHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Q 010273 202 WRVMLGVGILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWRE 280 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
||+.|++.+++.++..+ ...++||+|++...+.+.++ ++...+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------------------~~~~~~~ 212 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ-----------------------------------RAPVLRA 212 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh-----------------------------------hhhhHHH
Confidence 99999987665555444 45668888753211100000 0000111
Q ss_pred hhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 010273 281 IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLL 360 (514)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~ 360 (514)
.++..+..+...++. ..+......+....|.|.++++.+.+. ...+.......++.+++.++.|++.||++||+.+
T Consensus 213 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (406)
T PRK11551 213 LFGEGRATATLLLWI---SYFFTLIVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV 288 (406)
T ss_pred HhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111111111111111 111112223345567889888866544 4555666667889999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHH
Q 010273 361 YVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 440 (514)
....+...++...+..... . .. +.......++...+..+..+++..|.+|++.|+++.|+.+...++|..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~------~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 359 (406)
T PRK11551 289 LLIYAGILASLAALAAAPS------F--AG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA 359 (406)
T ss_pred HHHHHHHHHHHHHHHhcCc------H--HH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH
Confidence 7755555444433322111 1 11 1112222233333444566778899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc-CcEehhhHHHHHHHHHHhh
Q 010273 441 IAMSFLSVSHAITV-GGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 441 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 473 (514)
+|.+.|.+.+..+. ...++....+.+++.++.+
T Consensus 360 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 360 GPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999886543 3334444444444444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=287.70 Aligned_cols=352 Identities=14% Similarity=0.126 Sum_probs=244.5
Q ss_pred hhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 61 DVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
....+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+++.
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999998776655555544333334799999999
Q ss_pred HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHH-H
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL-A 219 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~-~ 219 (514)
|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++++++.+ .++.|||+.|++.++++++..+ .
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l---~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI---YTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccchHHHHHHHHHHHHHHHHHH
Confidence 9999999985 556667779999999999999999999999999999999984 4567999999996666655444 4
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
++++||+|++. ++ .. + . ++....++++++ ++.++.....
T Consensus 162 ~~~lp~~p~~~---~~-------------~~----------------~--~-~~~~~~~~~ll~------~~~~~~~~~~ 200 (368)
T TIGR00903 162 LAALPALPFQA---AE-------------GF----------------G--F-KDAVKEFGALAG------RKDLWIIGAI 200 (368)
T ss_pred HHHcCCCCCCC---CC-------------Cc----------------c--h-HHHHHHHHHHHc------ChhHHHHHHH
Confidence 66789988531 00 00 0 0 000112344444 3444555555
Q ss_pred HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhhhh-hhHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRK---PLLYV-STIGMTICLLSLS 375 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r---~~~~~-~~~~~~~~~~~~~ 375 (514)
.++....++.+..|+|.++++.+.+ .. .+.......+. +.+..++++||..|| +.... ...+.++....+.
T Consensus 201 ~~~~~~~~~~~~~wlp~~L~~~g~s-~~-~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 201 LGFGVALFDNLAIWLEAALRPAGLE-DI-AGDAVALAILA---GLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-hH-HHHHHHHHHHH---HHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777888999999886644 33 33333333343 444457888887654 22221 2222222222211
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 376 LSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
. ..+ . ... +......+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +..
T Consensus 276 ~----~~~-~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~ 344 (368)
T TIGR00903 276 F----ELN-R---LAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAE 344 (368)
T ss_pred H----ccc-c---HHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHH
Confidence 1 111 1 111 1222223333444445677889999999999999999999999999999999987773 555
Q ss_pred cEehhhHHHHHHHHHHhh
Q 010273 456 GTFFVFSLISALSVAFVY 473 (514)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (514)
..|.++++..+++.+...
T Consensus 345 ~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 345 AYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777666643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=298.51 Aligned_cols=402 Identities=15% Similarity=0.087 Sum_probs=265.9
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++++|.++..+++.....+.++..++...|.+.++ |+|+.+.+++.+++.+++.++++++|+++||+|||++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 33445555555566666677777788889999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh----hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHH-HHHHHhhhccc
Q 010273 121 FQAGAAIMTLAP----SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGIL-LGYISNYAFSR 195 (514)
Q Consensus 121 ~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~~~~ 195 (514)
++++.+++++++ +++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+.++|.. .+++++..+.
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~- 181 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA- 181 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-
Confidence 999999988764 7888999999999999988888888999999999999999999999998864 4555443321
Q ss_pred CCCCccchhhHhhchHHHHHH-HHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 196 LPAHINWRVMLGVGILPSVFI-ALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 196 ~~~~~~Wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
...+||+.|++.+++.++. .+..+++||+|+....+ +.++.+. +.. .....++.++.
T Consensus 182 --~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~-----------~~~~~~~~~~~-- 239 (452)
T PRK11273 182 --WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN------DYP-----------DDYNEKHEQEL-- 239 (452)
T ss_pred --HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh------ccc-----------cccccccCCCc--
Confidence 1249999999977666654 44467778887531100 0000000 000 00000000000
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
+.++.++ ...++++.++...+..++.....+....|.|.|+++..+.+....+.......++.+++.++.|+++||+
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 240 --TAKQIFM-QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred --cHHHHHH-HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1123344455444444444444456677999999886544445556666667788899999999999999
Q ss_pred --CCchhhhh-hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH
Q 010273 355 --GRKPLLYV-STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431 (514)
Q Consensus 355 --~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (514)
+||+.... ...+..++...+.. .. .... ....+.... .+....+..+....+..|.+|++.||+++|+.+
T Consensus 317 ~~~r~~~~~~~~~~l~~~~~~~~~~--~~--~~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 389 (452)
T PRK11273 317 FRGNRGATGVFFMTLVTIATIVYWL--NP--AGNP--TVDMACMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 389 (452)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHH--hc--ccCh--HHHHHHHHH-HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHH
Confidence 44443222 11222222221111 10 0011 111111111 111111111222345668999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 432 VGSRVSSGA-IAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 432 ~~~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
...++|+.+ +|.+.|.+.|..|++..|++.+++++++.+....+.
T Consensus 390 ~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 390 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999998765 799999999999998898888887777766655443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=288.95 Aligned_cols=390 Identities=15% Similarity=0.124 Sum_probs=257.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhcchhHhh-hhhcc--ccChhHHHHHH-----HHHHHHHHHHHHhHHHhhhhhhhHHHHHH
Q 010273 45 LACAFFASLNSVLLGYDVGVMSGAIIF-IKEDL--KITEVQQEVLV-----GILSIISLFGSLAGGKTSDVLGRKWTIAL 116 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 116 (514)
+.++....++.+++++|...++.+.|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||++++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 345667777888999999999888774 55565 67665 45553 34556778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHH
Q 010273 117 AAIVFQAGAAIMTLAPSFA--------VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYI 188 (514)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 188 (514)
+.++++++++++++++|++ .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 58889999999999999999999999999999999999999999999988876
Q ss_pred HhhhcccCC-----CCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 010273 189 SNYAFSRLP-----AHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVA 263 (514)
Q Consensus 189 ~~~~~~~~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (514)
+...+.... .+.|||+.|++.+++.++...+...+||+|+|...+++.++.
T Consensus 180 ~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------------------------ 235 (438)
T PRK09952 180 LVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------------------------ 235 (438)
T ss_pred HHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc------------------------
Confidence 665543211 247999999998877666555556678888653221110000
Q ss_pred hccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q 010273 264 AGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIF 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+++....+..++.++.+. ......+......+....|.|.|+++..+.+...........++..+++
T Consensus 236 --------~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~ 302 (438)
T PRK09952 236 --------KKRIPVIEALLRHPGAFL-----KIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLT 302 (438)
T ss_pred --------cccCCHHHHHHHchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 000001111222111111 1111112222233445567888876544444433333344456777888
Q ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhh
Q 010273 344 ILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLR 423 (514)
Q Consensus 344 ~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 423 (514)
.++.|+++||++||+.+..+.++..++...+..... .... ...... .....++......+..+++..|.+|++.|
T Consensus 303 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~l~~~~~~~~~~~~~~~~~e~~p~~~r 377 (438)
T PRK09952 303 IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--AQSI--FWIVFF-SIMLANIAHDMVVCVQQPMFTEMFGASYR 377 (438)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--cCCh--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCcchh
Confidence 899999999999999887766554443332222111 1111 111111 11111222222234566788999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--hcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 424 AQASALGAVGS-RVSSGAIAMSFLSVSHAI--TVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 424 ~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
+++.|+.+..+ .+++.++|.+.+.+.+.. +|...+...+++.+++.+..+ ..++
T Consensus 378 ~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 378 YSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 99999976554 488999999999998854 255555656556655555543 3444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=342.18 Aligned_cols=430 Identities=35% Similarity=0.606 Sum_probs=324.5
Q ss_pred HHhhhhhhhhhhhcchhHhhhh--hcccc---------ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 52 SLNSVLLGYDVGVMSGAIIFIK--EDLKI---------TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~---------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
.++.+..++|....+...+... .+++. ++.+.+++.+...+|..+|++++|+++||+|||+.+..+.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3444677778877777666544 22222 224578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC
Q 010273 121 FQAGAAIMTLAP---SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP 197 (514)
Q Consensus 121 ~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 197 (514)
..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999999999999999999999999999999999999999999999998888876654333
Q ss_pred CCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHH
Q 010273 198 AHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAV 277 (514)
Q Consensus 198 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (514)
+..+||+.+++..++.++..+..+++||||+|+..++|.|||++.+++.++.+...++. .+..++. ++.++.+..
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~ 240 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEK----KESQESKAS 240 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-ccccccc----cccccccee
Confidence 34569999999999998888888899999999999999999999988855442221111 1111110 111111145
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 010273 278 WREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRK 357 (514)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 357 (514)
++++++.++ .+++.+..+.+..+....+.+...+|.+.+++..+..+. ........+..+++.+++.++.||+|||
T Consensus 241 ~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr 316 (451)
T PF00083_consen 241 WRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRR 316 (451)
T ss_pred eeecccccc-ccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 666666333 344555555566666666667777888888877766655 2333445567777888888999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCcc-hhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHH
Q 010273 358 PLLYVSTIGMTICLLSLSLSLTFLGNGQ-LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRV 436 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 436 (514)
+.+..+..+..++...+........+.. ................+..+..+..+.+..|.+|++.|+++.|+....+++
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i 396 (451)
T PF00083_consen 317 KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI 396 (451)
T ss_pred cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 9999888887777666641111111111 111222222333334555577788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHHHHHHH
Q 010273 437 SSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEML 490 (514)
Q Consensus 437 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
++++++.+...+.+..+....+.+.++++++..++.++++||+|+++.+|.++.
T Consensus 397 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 397 GGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999888887775677888888888888888899999999999887653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=285.87 Aligned_cols=377 Identities=13% Similarity=0.075 Sum_probs=268.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHH
Q 010273 45 LACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAG 124 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 124 (514)
|.....++++.+... .....++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 444444444444322 2367789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC-ccch
Q 010273 125 AAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH-INWR 203 (514)
Q Consensus 125 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~-~~Wr 203 (514)
.+++++++|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+...|..+|+.+++.+. ++ .+||
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~---~~~~~w~ 163 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV---QHSETWY 163 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHH
Confidence 9999999999999999999999999999999999999997 78999999999999999999999888743 33 3899
Q ss_pred hhHhhchHHHHHHHHHHhhcc-CChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhh
Q 010273 204 VMLGVGILPSVFIALALFVIP-ESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREII 282 (514)
Q Consensus 204 ~~f~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
+.+.+.++..++..+.++... +.|+ + +++++ ....+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------------------------------~~~~~----~~~~~~l 202 (393)
T PRK09705 164 QTLAWWALPAVVALFAWWWQSAREVA-----S--------------------------------SHKTT----TTPVRVV 202 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc-----c--------------------------------ccCCC----cCCcccc
Confidence 988765555444433333222 2221 0 00000 0001111
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh
Q 010273 283 NPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV 362 (514)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~ 362 (514)
+ ++..+......+.....+.....|.|.++++.+. +....+.......++.++++++.+++.||++||+....
T Consensus 203 ~------~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~ 275 (393)
T PRK09705 203 F------TPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLML 275 (393)
T ss_pred c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 1 1222222233333334455667789999988654 45556666777889999999999999999999988887
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeecc-ChhhhhHHHHHHHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIF-PLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
+..+..++..++..... .. ....... .+.......|.......+.. |++.+++..|+.+...++++.++
T Consensus 276 ~~~l~~~~~~~~~~~~~-----~~--~~~~~~l---~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g 345 (393)
T PRK09705 276 ALVLQLVGFCGFIWLPL-----QL--PVLWAMV---CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLA 345 (393)
T ss_pred HHHHHHHHHHHHHHccc-----hH--HHHHHHH---HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555544332111 11 1111111 12222233344444445555 46789999999999999999999
Q ss_pred HHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhccccCCCCCH
Q 010273 442 AMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCVPETKGKSL 484 (514)
Q Consensus 442 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
|.+.|.+.|..| +...+.+.++++++..++...+.+|+++|..
T Consensus 346 p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 346 PWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999876 5556677777777776666777777776544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=288.45 Aligned_cols=363 Identities=18% Similarity=0.249 Sum_probs=241.0
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHH-HHH-----HHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLV-GIL-----SIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
....++++.+++++|+..+++..|.+.+|++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 46777888999999999999999999999999887765443 332 223347899999999999999999999999
Q ss_pred HHHHHHHHHhhhhHH--------HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 121 FQAGAAIMTLAPSFA--------VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
+++++++++++++++ .+++.|+++|++.+...+....++.|++|+++|++++++...+.++|..+++.+++.
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 468899999999999999999999999999999999999999888888888777766
Q ss_pred cccC-----CCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccc
Q 010273 193 FSRL-----PAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD 267 (514)
Q Consensus 193 ~~~~-----~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (514)
+... .+..|||+.|++..+..++........||++++...+
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~---------------------------------- 221 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK---------------------------------- 221 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh----------------------------------
Confidence 4321 2357999999985544332222222334432210000
Q ss_pred hhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010273 268 NAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
++.+.+..++...+ .+ +.........+.....++....|.|.|+++..+.+....++......++.+++.++.
T Consensus 222 --~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T PRK15075 222 --HRPSMREIFRSLAA---NW--RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIG 294 (434)
T ss_pred --hccccccHHHHHHH---hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000001111111 00 111111122222333355667789999987544455556666777788899999999
Q ss_pred HHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 348 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
|+++||++||+.+..+..+..+...... ... ................. ++.....+..+.+..|.+|++.|+++.
T Consensus 295 g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~e~~p~~~rg~~~ 369 (434)
T PRK15075 295 GALSDRIGRRPVLIAFTVLAILTAYPAL-SWL-VAAPSFARMLAVELWLS---FLYGSYNGAMVVALTEVMPAEVRTAGF 369 (434)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHH-HHH-HcCCchHHHHHHHHHHH---HHHHHHHhhHHHHHHHHCCCCccchhe
Confidence 9999999999987765444322211111 111 11111111111111111 111122234446678999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhcC
Q 010273 428 ALGAVGSRV-SSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 428 g~~~~~~~~-g~~~~~~~~~~~~~~~g~~ 455 (514)
|+.+..... ++.++|.+.+.+.|..|+.
T Consensus 370 g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 370 SLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred eHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 997655554 5888999999999988754
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=292.22 Aligned_cols=384 Identities=14% Similarity=0.076 Sum_probs=244.9
Q ss_pred HHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 010273 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI 127 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 127 (514)
+...++..+...++.....+..|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444555556667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc------CCCCcc
Q 010273 128 MTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR------LPAHIN 201 (514)
Q Consensus 128 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~------~~~~~~ 201 (514)
++++++++.+++.|+++|++.+... ....++.|++|+++|++++++.....++|..+++.+.+.+.. ..+..|
T Consensus 118 ~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 118 MSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 9999999999999999999988654 456688999999999999999988777777777665544321 112358
Q ss_pred chhhHhhchHHHHHHHHHHhhccC-ChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Q 010273 202 WRVMLGVGILPSVFIALALFVIPE-SPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWRE 280 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
||+.|++.+++.++..+..+++++ .|+ ++.++.. +. ...++.+....+++
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~---------------------~~---~~~~~~~~~~~~~~ 247 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK---------------------KS---GTMPKDSFSKVLRY 247 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH---------------------hc---CccccccHHHHHHH
Confidence 999999988777776666555543 332 1100000 00 00000011122333
Q ss_pred hhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh-
Q 010273 281 IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPL- 359 (514)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~- 359 (514)
.++. +.++.+.+..+...........+.|.++.+..+.+....+.......++.+++++++|+++||++||+.
T Consensus 248 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~ 321 (476)
T PLN00028 248 GVTN------YRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM 321 (476)
T ss_pred HHcC------chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc
Confidence 3332 222222222222222223345578888876544555566777777889999999999999999986521
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHH
Q 010273 360 ---LYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRV 436 (514)
Q Consensus 360 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 436 (514)
.....+...+..+....... ..+.......+... +++.....+..+++..+. +++.+|++.|+.+..+++
T Consensus 322 ~~r~~~~~~~~~l~~i~~~~~~~---~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~l 394 (476)
T PLN00028 322 RGRLWALWIVQTLGGVFCIWLGR---ANSLGAAIVVMILF---SIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNV 394 (476)
T ss_pred chhHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHH---HHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccH
Confidence 11111111111111111111 01111111111111 111111122344555666 457899999999888888
Q ss_pred HHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 437 SSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 437 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
|+.+++.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 395 g~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 395 GAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8888887664 2223457778888887777776665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=293.89 Aligned_cols=396 Identities=12% Similarity=0.028 Sum_probs=276.3
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH
Q 010273 44 VLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA 123 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 123 (514)
+|.++..++++.++..+|.++++.++|.+.+|+|.+.++.+|+.+.|.+++.++++++|+++||+|||++++.+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcc-ccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 124 GAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS-PSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
+++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++. +.++.+|
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~---l~~~~gw 160 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI---LLEHFYW 160 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCh
Confidence 9999999999999999999999999998888888887776 67899999999999999999999999999 5567899
Q ss_pred hhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHH------------HHhccChhhHHHHHHHHHHHhccchh
Q 010273 203 RVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVL------------SKTNESVKEVEERLAEIQVAAGSDNA 269 (514)
Q Consensus 203 r~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
||.|++.....++..++ .+++|++++. .+++.|...... +...+..................-..
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGL 238 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 99999977666655444 5667776531 111122111110 00000000000000000000000000
Q ss_pred hhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 010273 270 EKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAII 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 349 (514)
....+... ++.+.+.+.++++.+.......+..........++.|.+++...+.++...+....+..++..++.++.|+
T Consensus 239 f~~~e~~~-~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~ 317 (495)
T PRK14995 239 FIRTQLAA-SRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI 317 (495)
T ss_pred HHHHHhcC-CCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000122333444444444444444444556678899999877778888888888899999999999999
Q ss_pred HHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH
Q 010273 350 LIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL 429 (514)
Q Consensus 350 l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 429 (514)
+.||+|+|+.+..+.++..++..++..... ......... .....++......+.......+..|++.++.+.++
T Consensus 318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~---~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 318 LVSRLGLRLVATGGMALSALSFYGLAMTDF---STQQWQAWG---LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHH---HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 999999998887777666665554433211 111111111 11122222222233444556677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 010273 430 GAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 430 ~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
.++..++|+.+|+.+.+.+.++
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=288.01 Aligned_cols=390 Identities=18% Similarity=0.187 Sum_probs=274.9
Q ss_pred hhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 56 VLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
+...+++..++...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 34556888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
.+++.|+++|++.+...+....++.|++|+++|++++++......+|.++++.+++. +.+..+||+.|++.++..++
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW---ILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH---HHHhCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 34467999999997777666
Q ss_pred HHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHH
Q 010273 216 IALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLIT 294 (514)
Q Consensus 216 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
..+. .++.||+|+.. +...++.++.. .+..... ..+.++++.++...++.++ ++.++
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~ 218 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKA--KWLTEEEKYIV-------------VGGLLAE-QQGKGPSTPKKYQIKELLK------DRRVW 218 (399)
T ss_pred HHHHhhheecCCCCcc--ccCCHHHHhhc-------------chhhccc-cccccccCCCccchHHHhc------CHHHH
Confidence 5554 44566655310 00001100000 0000000 0000111111222333333 23334
Q ss_pred HHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh-hhHHHHHHHHH
Q 010273 295 GCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV-STIGMTICLLS 373 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~-~~~~~~~~~~~ 373 (514)
......+...........+.|.++++..+.+....+.......++.+++.++.|++.||++||+.... ......++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV 298 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 44444444444555667788988877655666666777777888999999999999999999862211 11111111111
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010273 374 LSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 453 (514)
............. ......... .+.+..+..+..+++..|.+|++.|+++.|+.+...++|..++|.+.|.+.+..|
T Consensus 299 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 299 LSLLMFATNYVNI--PYAALALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHhccchh--HHHHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 1111111110011 111111222 2223333567788899999999999999999999999999999999999999888
Q ss_pred -cCcEehhhHHHHHHHHHHhh
Q 010273 454 -VGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 454 -~~~~~~~~~~~~~~~~~~~~ 473 (514)
+...+.+.+++.+++.+..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSYL 396 (399)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 87778777777766665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=289.97 Aligned_cols=393 Identities=9% Similarity=-0.006 Sum_probs=261.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH
Q 010273 44 VLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA 123 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 123 (514)
.|.++..+.+.......+...++...|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 45555555555555455566678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHH-HHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 124 GAAIMTLAPSFAVLII-GRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
+.++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..++|.+++.+ .+..||
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l---~~~~gw 172 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYL---FESFGW 172 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHH---HHHhCh
Confidence 9999999999998875 5799999999777777888899995 7899999999999999999999988874 345799
Q ss_pred hhhHhhchHHHHHHHHHHhhc-cCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 203 RVMLGVGILPSVFIALALFVI-PESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 203 r~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
|+.|++.+++.++..+..+++ ++.+.. .+.+.++ . ++..++... ++...........+.
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~--------------~~~~~~~~~~~~~~~ 232 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---EGLPPDGST--------------KKLSKKSTAEKINRF 232 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---ccCCCCCcc--------------ccccccchhhhhhhh
Confidence 999999877766555544333 322210 0000000 0 000000000 000000000000110
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV--GRKPL 359 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~r~~ 359 (514)
.. .+.++++.++......+....+......+.|.|+++.+. +....+......+++.+++.++.|++.||. ++|+.
T Consensus 233 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 310 (455)
T TIGR00892 233 LD-FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ 310 (455)
T ss_pred cc-hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHH
Confidence 00 112233334444444444444555666788888887654 445566666668888999999999999974 33333
Q ss_pred hhhhhHHH--HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHH
Q 010273 360 LYVSTIGM--TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVS 437 (514)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 437 (514)
........ .++.++.... + +. +. ++......++......+..++...|.+|++++++++|+.+...++|
T Consensus 311 ~~~~~~~~~~~l~~ll~~~~-----~-~~--~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 381 (455)
T TIGR00892 311 YLFSFALLFNGLTHLLCALA-----G-DY--TG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCA 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----c-hH--HH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHH
Confidence 33222111 1222111111 1 11 11 1222222333333444566677888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHH
Q 010273 438 SGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAF 471 (514)
Q Consensus 438 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 471 (514)
.+++|.+.|.+.+..+ |...|++.+++.+++.+.
T Consensus 382 ~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 382 VLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999998774 777887777766665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=280.66 Aligned_cols=373 Identities=13% Similarity=0.063 Sum_probs=266.8
Q ss_pred HHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010273 46 ACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125 (514)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 125 (514)
.+...+++..++.+.+....++..|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445566677777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 126 AIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 126 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+. .+..+||+.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~gw~~~ 164 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL--ARSIEWYWV 164 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHH
Confidence 999999999999999999999999999999999999999999999999998888999888888877642 234699999
Q ss_pred HhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 206 LGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
|++.+++.++..++.++ .+.|+. ++++ ++++++.. ++.+
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-------------------------------~~~~~~~~----~~~~--- 203 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPAL--GKHA-------------------------------PKADKPVA----KEKW--- 203 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCccc--cccC-------------------------------ccccCccc----cccC---
Confidence 99877766655444333 222210 0000 00000000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
++.++...+..++.....+.+..|.|.|+++..+.+....+.......++..+++++.|+++||+++|+.+.....
T Consensus 204 ----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~ 279 (394)
T PRK03699 204 ----GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG 279 (394)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 1112222233333333344566799999977655555566666666788899999999999999999988776655
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSF 445 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 445 (514)
+..+...++... .+ . ..... .....++...+..+...++..+..| +.++...|......++|..++|.+.
T Consensus 280 ~~~~~~~~~~~~----~~--~--~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~ 349 (394)
T PRK03699 280 LALVLMYLFVNT----DD--P--SHLLY-AILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVT 349 (394)
T ss_pred HHHHHHHHHHHc----CC--c--hHHHH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 544433333211 11 1 11111 1122222223333444455556555 4457788888889999999999999
Q ss_pred HHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 446 LSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 446 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
|.+.+..|++..+++.+++.+++.+.+...
T Consensus 350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 350 SPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 999999999888888887777776554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=284.32 Aligned_cols=357 Identities=15% Similarity=0.029 Sum_probs=254.6
Q ss_pred hhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 61 DVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
.....++..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA- 219 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~- 219 (514)
|++.|++.+..++.....+.+++| ++|++++++...+.++|..+++++.+. +.+..+||+.|++.++..++..+.
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS---VINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888999987 579999999999999998776555544 233569999999988777766555
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
+++++++|+. +.+ + + .+.++++...++.+++++ ++.....
T Consensus 174 ~~~~~~~~~~---~~~-------------~-----------------~-~~~~~~~~~~~~~~~~~~------~~~~~~~ 213 (377)
T TIGR00890 174 AFLIGYPPGQ---LIK-------------T-----------------N-IEVSVKDYTVWEMLRTPQ------FWVLYLS 213 (377)
T ss_pred HHheecCchh---ccc-------------c-----------------C-cccchhhhhHHHHHcCcc------HHHHHHH
Confidence 4445554420 000 0 0 000001112233333222 1111111
Q ss_pred HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLT 379 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 379 (514)
.+...........+.+.+.++.+.+ ....+.......+..+++.++.|++.||++||+.+..+.++..++...+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T TIGR00890 214 FFLNAVSGLLLIGLYKPYGQSLGLS-DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM 292 (377)
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 1211112222333455566665543 445556666688899999999999999999999888877776666554433221
Q ss_pred HhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEeh
Q 010273 380 FLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFF 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 459 (514)
.. ...... .....+.......+....+..|.+|+++|+++.|+.+...++|..++|.+.|.+.+..|++..+.
T Consensus 293 ----~~--~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~ 365 (377)
T TIGR00890 293 ----LN--DVLFLA-TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFI 365 (377)
T ss_pred ----ch--hHHHHH-HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Confidence 01 111111 11112222223334455678899999999999999999999999999999999999999888887
Q ss_pred hhHHHHHHHH
Q 010273 460 VFSLISALSV 469 (514)
Q Consensus 460 ~~~~~~~~~~ 469 (514)
+.+++.+++.
T Consensus 366 ~~~~~~~~~~ 375 (377)
T TIGR00890 366 VTGAFALTSL 375 (377)
T ss_pred HHHHHHHHhc
Confidence 7776665543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=280.30 Aligned_cols=359 Identities=16% Similarity=0.126 Sum_probs=252.4
Q ss_pred HHHhhhhhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 51 ASLNSVLLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
..+..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++.+.+.
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 334445555677888888885 7889999999999999999999999999999999999999999999999988877665
Q ss_pred hh--------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc
Q 010273 130 LA--------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN 201 (514)
Q Consensus 130 ~~--------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 201 (514)
++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+ .+..|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l---~~~~g 176 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL---YHWGG 176 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH---HHccc
Confidence 54 25778999999999999999999999999999999999999999999999999999999884 34679
Q ss_pred chhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 202 WRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
||+.+++.++..++..+.....|++++ + + ++ +.++++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~---------------------------------~~----~~~~~~~ 214 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPP----V-K---------------------------------GE----RLPFRRV 214 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C---------------------------------cc----chhHHHH
Confidence 999988766555443333332333221 0 0 00 0011111
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 361 (514)
++ +.++......+ . ...+.....+.+.++.+.+.. ..+.......++.+++.++.|++.||+++|+.+.
T Consensus 215 ~~--~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 283 (399)
T PRK05122 215 LG--RVWPYGMGLAL--A----SIGFGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAI 283 (399)
T ss_pred HH--HHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 11 01111111111 1 111223344667777665542 2233344567788899999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 362 VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
.+..+..++..++..... . +.. +......+++.....|.......|..|++.|+++.|+.+...++|..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~------~--~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 354 (399)
T PRK05122 284 VSLLVEILGLLLLWLAPS------P--WMA-LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGIT 354 (399)
T ss_pred HHHHHHHHHHHHHHHhcc------H--HHH-HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665554443211 1 111 1122222222223334444556678899999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhh
Q 010273 442 AMSFLSVSHAITVGGTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 442 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 474 (514)
+.+.|.+.+..|++..+++.+++.+++.++...
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999989888888887777776665443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=287.50 Aligned_cols=399 Identities=13% Similarity=0.085 Sum_probs=276.3
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhh----------------------ccccChhHHHHHHHHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKE----------------------DLKITEVQQEVLVGILSIISLFG 97 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~i~ 97 (514)
..+.++.+..+++++..+.+.|+...+.+.+.+.+ |++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 34556677777788888889999999999988877 89999999999999999999999
Q ss_pred HHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhh
Q 010273 98 SLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFP 175 (514)
Q Consensus 98 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 175 (514)
+++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999887654 56888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCC-ccchhhHhhchHHHHHHHHHHh-hccCChhHHHHcCCHHHHHHHHHHhccChhhH
Q 010273 176 EIFINLGILLGYISNYAFSRLPAH-INWRVMLGVGILPSVFIALALF-VIPESPRWLVMQGRIDEARLVLSKTNESVKEV 253 (514)
Q Consensus 176 ~~~~~~g~~~g~~~~~~~~~~~~~-~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
..+..+|.++++++++.+. +. .+||+.|++.++..++..++++ +.+|+|+.. ++.++
T Consensus 173 ~~~~~~g~~i~~~l~~~l~---~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~--------------- 231 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLC---ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISK--------------- 231 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH---hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCH---------------
Confidence 9999999999999998843 45 4999999998887777666544 456666411 00000
Q ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHH
Q 010273 254 EERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAAT 333 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
++.+.+.+....+ .++.+.+..+++.++ ++.++...+..+......+.+..|+|.|+++..+.+....++..
T Consensus 232 -~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~ 303 (465)
T TIGR00894 232 -FEKKYINSSLQGQ-KGSTRQSLPIKAIPK------SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLS 303 (465)
T ss_pred -HHHHHHHhhcccc-cCCCCCCCCHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHH
Confidence 0001111100000 001111223444443 44455555555666666667778999999876555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhhh---hhHHHHHHH---HHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccc
Q 010273 334 VAVGFTKTIFILIAIILIDKVGRKPLLYV---STIGMTICL---LSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407 (514)
Q Consensus 334 ~~~~~~~~~~~~~~g~l~d~~~~r~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
....++.+++.+++|+++||+++|+.... ..+...++. ....+....... .. ...+.. ....+.+..+..
T Consensus 304 ~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-~~l~~~~~~~~~ 379 (465)
T TIGR00894 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA-AF--YLTIII-LTLANAVSSGPL 379 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ch--HHHHHH-HHHHHHHhhhhh
Confidence 77889999999999999999865432110 111111111 111111111011 11 111111 112222222222
Q ss_pred cccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCcEehhhHHHHHHHHHHh
Q 010273 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI---TVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~ 472 (514)
+.......|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.+++.+++.++.
T Consensus 380 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 380 AGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 333445556665 58999999999999999999999999887643 35566777776666666553
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=270.85 Aligned_cols=440 Identities=19% Similarity=0.255 Sum_probs=316.2
Q ss_pred CCCCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhcc--------ccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 010273 37 SGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDL--------KITEVQQEVLVGILSIISLFGSLAGGKTSDVL 108 (514)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~ 108 (514)
.....|+....+.+..++.+.+.+|...++.+.|.+...+ +.++...+.+..+..+|..+||++.|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445678888889999999999999999999998776544 24566788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHH
Q 010273 109 GRKWTIALAAIVFQAGAAIMTLAP-------SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL 181 (514)
Q Consensus 109 Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 181 (514)
|||+++...++++.+++++++++. -.+++...|++.|+|.|+-+|.+.+..+|...+++||..++.+.+..+.
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999888762 2467888999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHhhhcc----cCCCC--------ccchhhHhhchHHHHHHHHHHhhccCChhHHHHcC-CHHHHHHHHHHhcc
Q 010273 182 GILLGYISNYAFS----RLPAH--------INWRVMLGVGILPSVFIALALFVIPESPRWLVMQG-RIDEARLVLSKTNE 248 (514)
Q Consensus 182 g~~~g~~~~~~~~----~~~~~--------~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~ 248 (514)
|...|.+++-.+. ...+. .-||..|.+++++++++....+.+||+++|..... +.+.+. ++..+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k 268 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKK 268 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccc
Confidence 7766665554432 21111 24999999999999999999999999998763333 222222 11111
Q ss_pred ChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchH
Q 010273 249 SVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNE 328 (514)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (514)
.... ..++......... ..+.....+...+. .+.-+.+...+..+|..-.+++....+...+++..+..+...
T Consensus 269 ~~~~---~~~~~~~~~~~~~-~~~~~~~~F~~~f~---~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~ 341 (538)
T KOG0252|consen 269 VLSV---DIEAESTAESDVP-PPSNSFGLFSRLFL---RWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSAN 341 (538)
T ss_pred cccc---ccchhhccccCCC-CcccccchHHHHHH---HHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcc
Confidence 1000 0000000000000 11111111222211 112244555666677777778888888899988766554433
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHh
Q 010273 329 LL--------AATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVA 400 (514)
Q Consensus 329 ~~--------~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.. ...++...+.++|..+..+++|++|||++.+.+++++.+..+.+........ .. ...++...+...
T Consensus 342 ~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--~~--~Gf~v~y~l~~f 417 (538)
T KOG0252|consen 342 TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--NT--IGFVVLYSLTFF 417 (538)
T ss_pred hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc--cc--CceeehHHHHHH
Confidence 22 1122233334446667778999999999999999999988887766544211 11 122222233344
Q ss_pred hhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 401 FFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH-----AITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
+...+.......+.+|.+|++.|++..|+..+.+-.|++++...+..+.+ ..+.+..++++++++.++.+.. ++
T Consensus 418 f~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l 496 (538)
T KOG0252|consen 418 FGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LL 496 (538)
T ss_pred HHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EE
Confidence 56677777888999999999999999999999999999999999999998 6788889999999998888775 45
Q ss_pred cccCCCCCHHHHHHHh
Q 010273 476 VPETKGKSLEQIEMLF 491 (514)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (514)
+||+++|++++.+.++
T Consensus 497 ~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 497 IPETKGKSLEEISNEE 512 (538)
T ss_pred eecccccCHHHhcChh
Confidence 5799999988775443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=272.62 Aligned_cols=377 Identities=14% Similarity=0.076 Sum_probs=263.7
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhh-ccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKE-DLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 125 (514)
.+.+..++.+........++++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 4445555555556688899999998876 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc------
Q 010273 126 AIMTLA-----PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS------ 194 (514)
Q Consensus 126 ~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~------ 194 (514)
++.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 115 ~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~ 193 (462)
T PRK15034 115 VWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFA 193 (462)
T ss_pred HHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999987 8999999999999998 6688999999999999999999999997777777766655543321
Q ss_pred cC---------CCCccchhhHhhchHHHHHHHHHHh-hccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHh
Q 010273 195 RL---------PAHINWRVMLGVGILPSVFIALALF-VIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAA 264 (514)
Q Consensus 195 ~~---------~~~~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (514)
.+ .+..+||..+++..++.++..++.+ +.++.|+
T Consensus 194 ~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------------ 237 (462)
T PRK15034 194 FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------------ 237 (462)
T ss_pred HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------------------------------------
Confidence 00 1134588888777666666555544 4443331
Q ss_pred ccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHH
Q 010273 265 GSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (514)
++.......+.+ |++..|.+++..++.+..+..+.+++|.|+++.. .. ...........+...+.+
T Consensus 238 ------~~~~~~~~~~vl------k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~-~~-~~~l~~~~l~~l~~~l~r 303 (462)
T PRK15034 238 ------SRASIADQLPVL------QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF-PD-VNILRLAFFGPFIGAIAR 303 (462)
T ss_pred ------cccCHHHHHHHh------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ch-HHHHHHHHHHHHHHHHHH
Confidence 001111222233 3444555666666666667777789999987743 22 222222333457788889
Q ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccCh----
Q 010273 345 LIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPL---- 420 (514)
Q Consensus 345 ~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 420 (514)
+++|+++||+|+++++.++.+...++......... .....................+.+ +...+-++.+.+|+
T Consensus 304 plgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~ 380 (462)
T PRK15034 304 SVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIY 380 (462)
T ss_pred HhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhh
Confidence 99999999999999999888777666544332221 111111122222111111122222 12344556666663
Q ss_pred -----------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhccc
Q 010273 421 -----------------RLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCVP 477 (514)
Q Consensus 421 -----------------~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 477 (514)
++.|.+.|+....+.+|+++.|.+.|...+..| +...++.+.+..+++.++.+....
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 381 RVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred cccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 256889999999999999999999999888765 555788888888888887766543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=273.52 Aligned_cols=368 Identities=14% Similarity=0.084 Sum_probs=255.6
Q ss_pred HHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 50 FASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
...+..+..+.......+.+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 34445556666778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 130 LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 130 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
+++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++. +.+..+||+.|++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~---l~~~~gwr~~f~~~ 163 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY---LSQEFSWRYTFLLI 163 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH---HhhhccHHHHHHHH
Confidence 999999999999999999998888888999999999999999999999999999999999888 44567999999997
Q ss_pred hHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 ILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
++..++..+. ++++||.++ +.+ .+.+..++ .+++++
T Consensus 164 ~~~~~~~~~~~~~~lp~~~~----~~~------------------------------------~~~~~~~~-~~~~~~-- 200 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIRD----EAK------------------------------------GGLREQFH-FLRSPA-- 200 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCc----ccc------------------------------------cCHHHHHH-HhcChH--
Confidence 7766555443 556777542 000 00000111 122111
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMT 368 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 368 (514)
.+......+....+......+.+.++.+..+.+....+.......++.+++.++.+++.||+++|+.+..+..+..
T Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~ 276 (382)
T PRK10091 201 ----PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIV 276 (382)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHH
Confidence 1111111111111222223455556665444555566677777889999999999999999999998887777666
Q ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 369 ICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSV 448 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 448 (514)
++.+++..... ........... ...+.+. ...+.......+..|++.++.+ ..+...++|.+++|.+.|.+
T Consensus 277 i~~~~~~~~~~-----~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l 347 (382)
T PRK10091 277 LALLMLFFFGG-----MKTASLIFAFI-CCAGLFA-LSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMM 347 (382)
T ss_pred HHHHHHHHHHh-----hHHHHHHHHHH-HHHHHHh-hhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHH
Confidence 66544432211 11111111111 1111111 1112222233344444555444 34677899999999999999
Q ss_pred Hhh-hhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 449 SHA-ITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 449 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
.|. .+|+..+...++++++...+...+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 348 LTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 995 5787878777666666555544443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=285.74 Aligned_cols=407 Identities=14% Similarity=0.071 Sum_probs=269.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH
Q 010273 44 VLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA 123 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 123 (514)
++..+....+.....+.++..+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3455555666666667677777788888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh----hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC
Q 010273 124 GAAIMTLA----PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH 199 (514)
Q Consensus 124 ~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 199 (514)
+.++.++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+.++|..+++.+.+.. ...+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~--~~~~ 181 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG--MAWF 181 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH--HHHh
Confidence 99887764 46788889999999999998898999999999999999999999999999998887766542 1123
Q ss_pred ccchhhHhhchHHHHHHH-HHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHH
Q 010273 200 INWRVMLGVGILPSVFIA-LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVW 278 (514)
Q Consensus 200 ~~Wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (514)
.+||+.|++.++..++.. +.++++||+|+....+ +.++.+. +..... .+ + .+.+.+.++...
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~--------~~--~-~~~~~~~~~~~~ 244 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYRN-----DYPDDY--------NE--K-AEQELTAKEIFM 244 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhccc-----cccccc--------cc--c-cccccchHHHHH
Confidence 589999999777766654 4466678877521100 0000000 000000 00 0 000000011111
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 010273 279 REIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKP 358 (514)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 358 (514)
+..+ +++.++......++.....+....|.|.|+++..+.+....+.......+.++++.+++|+++||+++++
T Consensus 245 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 245 QYVL------PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHc------cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 1222 3333444433333333344456678999998865555556667677788899999999999999996543
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHH
Q 010273 359 LLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSS 438 (514)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 438 (514)
....+.....+......... .....+. .......+. .+....+..........|.+|++.|+++.|+.+...++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg 394 (438)
T TIGR00712 319 RGATGVFFMTLVTIAVIVYW-MNPAGNP--LVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 394 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHH-hcCCCch--HHHHHHHHH-HHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhh
Confidence 32223222221111111111 1111111 111111111 1111112111222346688999999999999999888875
Q ss_pred -HHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 439 -GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 439 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+++|.+.|.+.|..|+...+.+..++.+++.+....+.+|.|
T Consensus 395 ~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 395 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999988888888887777777777777655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=272.94 Aligned_cols=355 Identities=15% Similarity=0.103 Sum_probs=248.3
Q ss_pred hhhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh----
Q 010273 56 VLLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL---- 130 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---- 130 (514)
++..+......|.+|. +.+|+|.|..++|++.+++.+++.++++++|+++||+|||++++.+.+...++.+....
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444466777788884 78899999999999999999999999999999999999999999998887776553321
Q ss_pred ----hhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 131 ----APSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 131 ----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
.++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++.+ .+..|||+.+
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l---~~~~g~~~~~ 181 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL---HSHFGFAALA 181 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH---HhccChHHHH
Confidence 358899999999999999988888899999999999999999999999999999999999884 3457999887
Q ss_pred hhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCH
Q 010273 207 GVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
++..+..++........||.++ + + +++. +.++..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~-~~~~----~~~~~~~--- 216 (392)
T PRK12382 182 LTTMVLPLLAWAFNGTVRKVPA------H-------------------------------A-GERP----SLWSVVG--- 216 (392)
T ss_pred HHHHHHHHHHHHHHHhccCCCC------C-------------------------------c-ccCc----hHHHHHH---
Confidence 7654443333322222333221 0 0 0000 0111111
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHH
Q 010273 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIG 366 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~ 366 (514)
..+...+..... .........+.|.++++.+... .+.......++.+++.++.|++.||+++|+.+..+..+
T Consensus 217 ~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 288 (392)
T PRK12382 217 LIWKPGLGLALQ-----GVGFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLV 288 (392)
T ss_pred HHHHhHHHHHHH-----HHHHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHH
Confidence 111111111111 1112233456677777655432 23444456677888999999999999999988887776
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 367 MTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
..++..++.... +. +.... .....+.......|...+...|.+|+++|+++.|+.+...++|..++|.+.|
T Consensus 289 ~~~~~~~~~~~~------~~--~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 289 ETVGLLLLWLAP------TA--WVALA-GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHHHHHHHHHcc------cH--HHHHH-HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655443321 11 11111 1122222222233455566778889999999999999999999999999999
Q ss_pred HHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 447 SVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 447 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
.+.+..|++..+.+.+++.+++.+.....
T Consensus 360 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 360 MLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998888888777777665543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=269.01 Aligned_cols=350 Identities=15% Similarity=0.136 Sum_probs=242.5
Q ss_pred hhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 61 DVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
......+.+|.+.+++|.++++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++|++.+++.
T Consensus 35 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (394)
T PRK10213 35 VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIG 114 (394)
T ss_pred HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 44455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA- 219 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~- 219 (514)
|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ .+..+||+.|++.+++.++..+.
T Consensus 115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l---~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL---GELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 45679999999977666554443
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
...+||+|+. + ++......+.++ ++.++.....
T Consensus 192 ~~~~p~~~~~--------------------------------------~---~~~~~~~~~~l~------~~~~~~~~~~ 224 (394)
T PRK10213 192 IKSLPSLPGE--------------------------------------P---SHQKQNTFRLLQ------RPGVMAGMIA 224 (394)
T ss_pred HHHCCCCCcc--------------------------------------c---ccchhHHHHHhc------CHHHHHHHHH
Confidence 3346665420 0 000011222333 2222222122
Q ss_pred HHhhhccceeeccch-HHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYS-PTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSL 378 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 378 (514)
.+...........+. |.+.++.+.+ ....+......+++.+++.++.+++.||.+ |+.+.....+..++...+....
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~ 302 (394)
T PRK10213 225 IFMSFAGQFAFFTYIRPVYMNLAGFG-VDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh
Confidence 222222222233344 6666666544 445566666688899999999999999954 4443333333233222222111
Q ss_pred HHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEe
Q 010273 379 TFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTF 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 458 (514)
. .. +.... .....++......+...+.+.+..| +.++.+.++.....++|..+|+.+.|.+.|..|+...+
T Consensus 303 ~-----~~--~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~ 373 (394)
T PRK10213 303 S-----DK--IVATG-VAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPL 373 (394)
T ss_pred h-----hH--HHHHH-HHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHH
Confidence 1 01 11111 1222222222333444445666666 44667777778888999999999999999998877666
Q ss_pred hhhHHHHHHHHHH
Q 010273 459 FVFSLISALSVAF 471 (514)
Q Consensus 459 ~~~~~~~~~~~~~ 471 (514)
...+++.++..+.
T Consensus 374 ~~~~~~~~~~~~~ 386 (394)
T PRK10213 374 MLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=273.11 Aligned_cols=383 Identities=20% Similarity=0.234 Sum_probs=263.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH
Q 010273 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 122 (514)
+.+..+..+.+..+..+++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 34455556666667777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 123 AGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++. +.+..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~g~ 170 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW---LIPVFGW 170 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH---Hhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 4456799
Q ss_pred hhhHhhchHHHH-HHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Q 010273 203 RVMLGVGILPSV-FIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREI 281 (514)
Q Consensus 203 r~~f~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
|+.|++.++..+ ...+...++||++++...+ +.++..+..++......... ......+..+.+..+..++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 243 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA------QSALPEQKATQGTKRSVFKAL 243 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc------cccccccccccchhhHHHHHH
Confidence 999998754444 4444567789888765444 33332222221111000000 000000000111112223333
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 361 (514)
++. +..+... .+....+...........+.|.+.++.+.+. ...+.......++.+++.++.++++||+++|+...
T Consensus 244 ~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (398)
T TIGR00895 244 FQG-KTARITV--LLWLLYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319 (398)
T ss_pred hcc-hhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 332 2222211 1112222333334455667786666665544 45566666688999999999999999999884433
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 362 VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
...+..+...++.... . +. .. ........+++.....+...++..|.+|++.|+++.|+.+....+|..++
T Consensus 320 -~~~~~~~~~~~~~~~~---~--~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g 390 (398)
T TIGR00895 320 -LLLLGAVFAVLVGSTL---F--SP--TL-LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390 (398)
T ss_pred -HHHHHHHHHHHHHHHh---h--CH--HH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222211 1 11 11 11122222333334446677889999999999999999999999999999
Q ss_pred HHHHHHH
Q 010273 442 AMSFLSV 448 (514)
Q Consensus 442 ~~~~~~~ 448 (514)
|.+.|.+
T Consensus 391 ~~~~G~l 397 (398)
T TIGR00895 391 PILAGYL 397 (398)
T ss_pred HHhHHhc
Confidence 9998865
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=273.49 Aligned_cols=367 Identities=15% Similarity=0.036 Sum_probs=258.1
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++..+...+++.+..+...++...+.+.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45566667777777788788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc
Q 010273 121 FQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI 200 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 200 (514)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++......+|..++|.+++.+ .++.
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l---~~~~ 164 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL---IHVL 164 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcc
Confidence 9999999999999999999999999999988888999999999999999999999888889999999998884 3457
Q ss_pred cchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHH
Q 010273 201 NWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279 (514)
Q Consensus 201 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (514)
+||+.|++.++..++..+. ++..||+++.. ++ + .+..+....++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------------------------~~~~~~~~~~~ 209 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-K-------------------------------LSLKELGRDYK 209 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-c-------------------------------ccHHHHHHHHH
Confidence 9999999877766665554 45567664210 00 0 00001112233
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 010273 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPL 359 (514)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~ 359 (514)
..+++++ ++......+...........+.|.++.+..+.+....+.......++.+++.++.+++.||+++|+.
T Consensus 210 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 210 LVLKNRR------FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred HHHcCcH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3444222 2222222111111122233456777655444455555665565667888999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHH
Q 010273 360 LYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSG 439 (514)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 439 (514)
+..+.++..++..++......... .. ........ ..+.......+......... +++++|++.++.+....++..
T Consensus 284 ~~~~~~~~~~g~~~~~~~~~~~~~-~~--~~~~~~~~-~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 358 (406)
T PRK15402 284 IRMGLWPMVAGLLLAALATVISSH-AY--LWLTAGLS-LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFT 358 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc-cH--HHHHHHHH-HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHH
Confidence 888777666666655543321111 11 11111111 11111111122222222222 447899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCc
Q 010273 440 AIAMSFLSVSHAITVGG 456 (514)
Q Consensus 440 ~~~~~~~~~~~~~g~~~ 456 (514)
+++.+.+.+.+..+...
T Consensus 359 ~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 359 VGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHHhcccCCchHH
Confidence 99999999888766433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=279.31 Aligned_cols=375 Identities=14% Similarity=0.073 Sum_probs=269.1
Q ss_pred hhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-----hh
Q 010273 58 LGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL-----AP 132 (514)
Q Consensus 58 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~ 132 (514)
..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+. .+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP 108 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence 3335567778889888999999999999999999999999999999999999999999998888887766543 46
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHH
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~ 212 (514)
+++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+. +..+|++.|++.++.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~---~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI---AAGGVAWNYGLAAAG 185 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH---HHHhhHHHHHHHHHH
Confidence 78999999999999998888888999999999999999999999999999999999998843 346899999987777
Q ss_pred HHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHH
Q 010273 213 SVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML 292 (514)
Q Consensus 213 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
.++..+..+.+|++++.. .+ .++..++.+..++..++ .+..+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~---~~-------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (417)
T PRK10489 186 TFITLLPLLRLPALPPPP---QP-------------------------------REHPLRSLLAGFRFLLA-SPVVGGIA 230 (417)
T ss_pred HHHHHHHHHhCCCCCCCC---cc-------------------------------cccchHHHHHHHHHHHc-ChHHHHHH
Confidence 776666666777754310 00 00000011112333333 12222111
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
+... .... ......+.|.++++..+.+....+.......++.+++.++.+++.||.++++.+..+.++..++.+
T Consensus 231 ~~~~-----~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 304 (417)
T PRK10489 231 LLGG-----LLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVG 304 (417)
T ss_pred HHHH-----HHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHH
Confidence 1111 1111 123455778888884445555666777778899999999999999997777777766666555544
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
.+..... ...........+.......+...++..|..|++.||+++|+.+...++|..++|.+.|.+.+..
T Consensus 305 ~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~ 375 (417)
T PRK10489 305 LFGLMPM---------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM 375 (417)
T ss_pred HHHccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 4332211 1111111222222222223455577889999999999999999999999999999999999999
Q ss_pred hcCcEehhhHHHHHHHHHHhhhccccCCCCCHH
Q 010273 453 TVGGTFFVFSLISALSVAFVYKCVPETKGKSLE 485 (514)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (514)
|+...++..+++.++..++.....++.|+++++
T Consensus 376 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 376 TPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 988888888877777777766777777665544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=264.38 Aligned_cols=373 Identities=18% Similarity=0.201 Sum_probs=252.6
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
.+..+..+.++++.+.+.+.|+..+....+.+++.+|++++..|++.+.+.+.+.+++|+.|+++|||.||+++.+|.++
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34445566778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc
Q 010273 121 FQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI 200 (514)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 200 (514)
|+++.+++++++.||+++++|.+.|+|++...|+++++++|.+|.++|++++++++.+.++|..+|.+.+..+.... .
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~--~ 185 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT--F 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888854432 2
Q ss_pred cchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHH
Q 010273 201 NWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279 (514)
Q Consensus 201 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (514)
.|||.|+..+++++++.++ .++.+|+++ +..|+... +.+..++....++
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-------------------------~~~~~~~~ts~~k 235 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-------------------------ENKMVKPFTSVWK 235 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-------------------------CCcCCCCccchHH
Confidence 3999999999988888777 455566543 11111000 0000112223344
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010273 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKG---AGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGR 356 (514)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 356 (514)
++.. ..+.+.+....+...........+..|.|.+... ..+.+.....++..+...++.+|.+++|.++||+.|
T Consensus 236 Dl~~---l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~ 312 (493)
T KOG1330|consen 236 DLKV---LAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSR 312 (493)
T ss_pred HHHH---HHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHH
Confidence 3321 1121222222222222223334555666665542 122233344555666778899999999999999432
Q ss_pred c----hhhhhhhHHH----HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHH
Q 010273 357 K----PLLYVSTIGM----TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASA 428 (514)
Q Consensus 357 r----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 428 (514)
+ ....+.-+.. ..+..++...... ........+.++........+ .. ....-+..|+.|++.|.++++
T Consensus 313 ~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-~~~s~~~~~il~~~g~~~~~~--~~-a~n~~i~l~vV~p~~Rt~a~a 388 (493)
T KOG1330|consen 313 IFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-TSSSMIFGLILFLVGETISWF--NW-ATNNPIFLEVVPPSRRTTAYA 388 (493)
T ss_pred hcccccchhHHHHHHhhhhhHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhc--cc-ccccceeeEecCcccccHHHH
Confidence 1 1222221111 1111122111111 111111122222222211122 22 233456778889999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhh
Q 010273 429 LGAVGSRVSS-GAIAMSFLSVSHAI 452 (514)
Q Consensus 429 ~~~~~~~~g~-~~~~~~~~~~~~~~ 452 (514)
+...+..+.+ +-+|++.|.+.|..
T Consensus 389 ~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 389 LDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHhccCCCcceehhHHHHh
Confidence 9877665544 55566999988854
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=270.56 Aligned_cols=391 Identities=16% Similarity=0.141 Sum_probs=268.8
Q ss_pred CCCchhhHHHHHHHHHhhhhhhhhhhhcchh-HhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHH
Q 010273 38 GSTRKYVLACAFFASLNSVLLGYDVGVMSGA-IIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIAL 116 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 116 (514)
+..+|..+.++..++...+....+...++-. +..+.+|++....+.+++.++|+++|+++++++|.+.||++..+.+..
T Consensus 37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~ 116 (495)
T KOG2533|consen 37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV 116 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH
Confidence 3445556677777777777777777665443 335779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC
Q 010273 117 AAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL 196 (514)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 196 (514)
..+++++.+++....+|++.+++.|++.|+.+++.+|....+++.||.++||++.++++.+..++|.++|.+++..+.++
T Consensus 117 ~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 117 SGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884321
Q ss_pred ---CCCccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHH--HHHHHHHhccchhh
Q 010273 197 ---PAHINWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEER--LAEIQVAAGSDNAE 270 (514)
Q Consensus 197 ---~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 270 (514)
....||||.|++.++++++..++ ++++|+.|.-. ....+.+++ .++.++...... +
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~-----------------~fl~~~ek~~~~~~~~~~~~~~~-~ 258 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA-----------------WFLTDEEKELVVERLRESPSGGI-E 258 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhc-----------------cccchHHHHHHHHHHHhccCCCc-c
Confidence 23479999999988777776655 77899998511 000111111 111111111111 1
Q ss_pred hhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 271 KNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIIL 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 350 (514)
++ ..+.++. +.++.+.+|...+..++.....+++.+|+|.++.+..+.+...+..+.++..++++++.+++|++
T Consensus 259 ~~---~~~~~~~---~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 259 NK---FKWKGFK---EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred cc---cCHHHHH---HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHH
Confidence 11 2233332 25567778888888888888899999999999999555666677888899999999999999999
Q ss_pred Hhhc----CCchhhhhhhHHHHHHH-HHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-hhhhh
Q 010273 351 IDKV----GRKPLLYVSTIGMTICL-LSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-LRLRA 424 (514)
Q Consensus 351 ~d~~----~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 424 (514)
+||+ .+|........+..+.. ..+... . . .. ........+. .......++.....++... ...+-
T Consensus 333 sdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~-~---~-~~--~~~~~~~~~~--~~~~~~~~~~~~w~s~~~~g~~k~~ 403 (495)
T KOG2533|consen 333 SDRLKTIFARRLLFIVFLCLYAIIGAISLLAA-A---V-LP--GAYGAFLIGP--YGLIATAIIALSWTSANLAGNTKAL 403 (495)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-c---c-ch--HHhHHHHhcc--hhhHHHHHHHHhhccccccchHHhH
Confidence 9994 44544444333333222 222111 1 0 00 1111111111 1111112233344444433 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCcEehhh
Q 010273 425 QASALGAVGSRVSSGAIAMSFLSVSH-AITVGGTFFVF 461 (514)
Q Consensus 425 ~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~ 461 (514)
+..++.....+.++.++|.+...... .+++...|...
T Consensus 404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 55555566666666666666544333 35666666333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=276.62 Aligned_cols=374 Identities=14% Similarity=0.108 Sum_probs=256.2
Q ss_pred hhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 010273 55 SVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSF 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 134 (514)
++..++++..+++..|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 44566688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHH-HHhhhcccCCCCccchhhHhhchHHH
Q 010273 135 AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGY-ISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 135 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
+.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++. +.+..+||+.|++.+++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFG---IAELYSWHWVFIVPGIIA 160 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHH---HHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 46655 334579999999877666
Q ss_pred HHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHH
Q 010273 214 VFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML 292 (514)
Q Consensus 214 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
++..+ .+++.||+|+....+. .++. ..++ . ++ .....+++.+..+...+..++ ++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~------~~~ 217 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPP-AEEM---------PNEE--P--DG---DAEKKEEELTKKQIFLQYVLL------NKV 217 (379)
T ss_pred HHHHHHHheeeCCCccccccCc-cccC---------cccc--c--cc---ccccccccccchHHHHHHHHh------cch
Confidence 55444 4556677654110000 0000 0000 0 00 000000001111122333333 333
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
++...+..+...........+.|.++++..+.+....+.......++.+++.++.+++.||..+|+..............
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 44333444444444445667888888765455555666667778899999999999999986433322222121111111
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
.+..... ..... ...... .....+.+..+..+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.+..
T Consensus 298 ~~~~~~~-~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 298 SLLVYWL-NPAAN--PLMDLI-CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred HHHHHhc-Ccchh--HHHHHH-HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 1111110 00001 111111 1122222233333444567789999999999999999999999999999999999998
Q ss_pred hcCcEe
Q 010273 453 TVGGTF 458 (514)
Q Consensus 453 g~~~~~ 458 (514)
||+..|
T Consensus 374 g~~~~f 379 (379)
T TIGR00881 374 GWAGAF 379 (379)
T ss_pred cccccC
Confidence 887543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=280.93 Aligned_cols=390 Identities=14% Similarity=0.092 Sum_probs=268.8
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA 126 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 126 (514)
++..++++.++..++....++..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34566667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 127 IMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++. +.++.+||+.|
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~---l~~~~~w~~~f 159 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW---IIENYHWRWIF 159 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH---hccCcCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999999988 55678999999
Q ss_pred hhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHH------------HHhccChhhHHHHHH-HHHH-----Hhccc
Q 010273 207 GVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVL------------SKTNESVKEVEERLA-EIQV-----AAGSD 267 (514)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~-----~~~~~ 267 (514)
++.+...++..+. .+++||+++ ..+++.|...... .+..+..+....... .... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9977766655544 455666543 1112222221110 000010000000000 0000 00000
Q ss_pred hhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010273 268 NAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
.+.+.+++....+.++ ++.++......+......+...++.|.++++..+.+....+....+..++.+++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 311 (485)
T TIGR00711 238 WELTDDNPLVDLRLFK------YRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIA 311 (485)
T ss_pred HHHcCCCCccCHHHHc------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000011222 2222222333333333344556688999988666667777888888889999999999
Q ss_pred HHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 348 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
|++.||++||+.+..+..+..++...+..... .+......... ....++......+.......+..|+++++++.
T Consensus 312 g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 312 GRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT--PDTPFLAIALP---QFIRGFGMGCFFMPLTTIALSGLPPHKIARGS 386 (485)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC--CCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence 99999999999888777766666554432111 11111111111 11111111111222334455677999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
|+.+..+++|+.+++.+.+.+.++.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=254.78 Aligned_cols=375 Identities=15% Similarity=0.147 Sum_probs=286.7
Q ss_pred HHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 50 FASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
+..+...........++++.+.+.+|+|+|++|.+++.++..+...+..++.|.+.||+|.|++...+.++..+-.+..+
T Consensus 18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 33333344444777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh---HHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc---ch
Q 010273 130 LAPS---FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN---WR 203 (514)
Q Consensus 130 ~~~~---~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~---Wr 203 (514)
++.+ ++++++.+++.|++.+ .+.+....++.||||+++|.++|++. ..|+|..+..++++.+ ....+ ||
T Consensus 98 ~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v---~~~~g~~~w~ 172 (417)
T COG2223 98 FAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV---AVAFGFLAWR 172 (417)
T ss_pred HHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH---HHHHhhHHHH
Confidence 9854 4599999999999765 78899999999999999999999999 8889988887777773 33456 99
Q ss_pred hhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHH-HHHHHh
Q 010273 204 VMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEK-AVWREI 281 (514)
Q Consensus 204 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 281 (514)
....+..+..++..+. ++...|.|... ...++.. ...+.
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r--------------------------------------~~~~~~~~~~~~~- 213 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGMNDVPEHR--------------------------------------ASVKPQLPAQLKA- 213 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhh--------------------------------------ccccccchhHHHH-
Confidence 8888877666665444 66677766310 0001111 22222
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 010273 282 INPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLY 361 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 361 (514)
..+++-.|.+++.++..+.++..+..++|.|+++....+...++.......+.+.+.++.+|+++||+|.++.+.
T Consensus 214 -----v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~ 288 (417)
T COG2223 214 -----VFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL 288 (417)
T ss_pred -----HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence 233455666667777777777888899999999988888877777777788889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 362 VSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
..+..++++..+.........+.. . .......+.....+...-....+.++...+| ++.|.+.|+....+.+|++.-
T Consensus 289 ~~f~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 289 AVFVGMALAAALLSLFLTGFGHGG-S-FVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred HHHHHHHHHHHHHHccccccccCc-c-hHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccch
Confidence 988888888777766543222111 1 1222222222222222223456677888876 467999999999999999999
Q ss_pred HHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhcc
Q 010273 442 AMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 442 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
|...+...+..| +...|+++..+.+++.+..+...
T Consensus 366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888 66788888888888877655543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=272.41 Aligned_cols=387 Identities=14% Similarity=0.108 Sum_probs=264.1
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
++++++.++..++...+.+..|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
+++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+ .++.+||+.|++
T Consensus 93 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l---~~~~gw~~~f~~ 169 (471)
T PRK10504 93 ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL---VEYASWHWIFLI 169 (471)
T ss_pred HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999884 456799999999
Q ss_pred chHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHH-----------HhccC-hhhHHHHHHH-------HHHHhccch
Q 010273 209 GILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLS-----------KTNES-VKEVEERLAE-------IQVAAGSDN 268 (514)
Q Consensus 209 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~-------~~~~~~~~~ 268 (514)
.....++..+. ....|+.+. .+.+.|....... +..+. .......... .......+.
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR 246 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665555444 344454431 1222222211100 00000 0000000000 000000000
Q ss_pred hhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010273 269 AEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAI 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 348 (514)
...++..+. +.++++.+.......++..........+.|+|++...+.+....++...+..++.+++.++.+
T Consensus 247 -~~~~~~~~~-------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 247 -NNNRALFSL-------KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred -cCCCCccCH-------HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111 122333333333333333333444556788888865455566677777777788888889999
Q ss_pred HHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHH
Q 010273 349 ILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASA 428 (514)
Q Consensus 349 ~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 428 (514)
++.||+++|+.+..+..+..+...++..... . .. .+..... ....+.......+.......+..|++.++.++|
T Consensus 319 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 319 QVVNRFGYRRVLVATTLGLALVSLLFMLVAL---L-GW-YYLLPFV-LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS 392 (471)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHhccc---c-cc-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence 9999999999988877766666554443211 1 11 1111111 111111111222344466667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 429 LGAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 429 ~~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
+.++...+|..+++.+.|.+.+..|+.
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998877763
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=263.81 Aligned_cols=372 Identities=13% Similarity=0.092 Sum_probs=250.4
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA 126 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 126 (514)
....+.+..+...++...+.|.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||++++.+.++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 33444555666777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 127 IMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
++++++|++.++++|+++|++.+...+....++.|++|+++|+++++++.....+|..+||++++.+. ++.|||+.|
T Consensus 97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---~~~gw~~~f 173 (413)
T PRK15403 97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---HFVHWKVLF 173 (413)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHH
Confidence 99999999999999999999998767777888999999999999999999999999999999998843 457999999
Q ss_pred hhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 207 GVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
++.++..++..+. ++.+||+++. ++ ++...+.....++..++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~~---~~--------------------------------~~~~~~~~~~~~~~ll~-- 216 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVKR---GA--------------------------------VPFSAKSVLRDFRNVFR-- 216 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccc---cC--------------------------------CCCChHHHHHHHHHHHc--
Confidence 9987777666554 5567886530 00 00000011122333443
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
++.++...+..+...........+.|.++++..+.+....++...+...+.+++..+.+.+.++..+++.......
T Consensus 217 ----~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 292 (413)
T PRK15403 217 ----NRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP 292 (413)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 3333333333333333344555677888888766677777777777777777877777776655444444332222
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSF 445 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 445 (514)
+..++..++........+ .. ....+..+. .+.+.....|......-.. ....+|++.|+.+.....+...++...
T Consensus 293 ~~~ig~~l~~~~~~~~~~-~~--~~~~~~~~l-~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~ 367 (413)
T PRK15403 293 IQLVGLALLIVGNLLWPH-VW--LWSVLGTSL-YAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIG 367 (413)
T ss_pred HHHHHHHHHHHHHHHccc-cH--HHHHHHHHH-HHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322222111111 11 111111111 1111112223333211111 122369999999999988888888888
Q ss_pred HHHHhhhhcCcEehhhHHHHHHH
Q 010273 446 LSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 446 ~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
+++.+. +....+...++++.+.
T Consensus 368 g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 368 RWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHc-CCchHHHHHHHHHHHH
Confidence 877665 4445555555444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=264.60 Aligned_cols=345 Identities=15% Similarity=0.144 Sum_probs=246.8
Q ss_pred hhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 56 VLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
+....+.....+..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44455778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ .++.+||+.|++.++..++
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l---~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI---LVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999884 3457999999987766665
Q ss_pred HHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHH
Q 010273 216 IALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLIT 294 (514)
Q Consensus 216 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
..+. +++.||+++. ++ +.+.++....+++.+++++.+
T Consensus 172 ~~~~~~~~~~~~~~~----~~--------------------------------~~~~~~~~~~~~~~~~~~~~~------ 209 (385)
T TIGR00710 172 LSALIFFILPETLPY----EA--------------------------------RIQISTYFETFLLLLKSKMFW------ 209 (385)
T ss_pred HHHHHHHhCCCCCCC----cc--------------------------------cCCHHHHHHHHHHHHcCchhH------
Confidence 5444 4556765421 00 000011112233333322211
Q ss_pred HHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 010273 295 GCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSL 374 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 374 (514)
...+..............+.|.++++..+.++...+.......++.+++.++.|++.||+++|+.+..+..+..++..++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 11111111222223344566777775545556666777777888999999999999999999998887766666665554
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 375 SLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
....... ... ...........+.......+.......|..| +.++++.++.+.....++.+.+.+.+...+
T Consensus 290 ~~~~~~~-~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 290 EITAILG-LGS---WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHhc-cch---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4332211 011 1111111222222222233455566677766 678999999998888777777777764443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=265.89 Aligned_cols=367 Identities=14% Similarity=0.150 Sum_probs=276.8
Q ss_pred hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccc
Q 010273 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVLIIGRLLAGVGIGF 150 (514)
Q Consensus 73 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~ 150 (514)
..++++|+.+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++.+.+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999999885 456789999999999999
Q ss_pred cccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhh-ccCChhH
Q 010273 151 GVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFV-IPESPRW 229 (514)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~ 229 (514)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+.+ ...||+++|++.++.+++..++|++ ..|+|.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~--s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~- 221 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE--SSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS- 221 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc--cCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence 999999999999999999999999999999999999999998533 2389999999998888888777554 567774
Q ss_pred HHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhcccee
Q 010273 230 LVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDA 309 (514)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
+++...++|++.++.....+..+++ .+.+|+++++ .+.+|...+..+....+++.
T Consensus 222 ------------------~h~~is~~El~~I~~~k~~~~~~~~-~~vP~~~i~t------s~~vwai~~~~f~~~~~~~~ 276 (466)
T KOG2532|consen 222 ------------------KHPNISEKELKYIEKGKSEAHVKKK-PPVPYKAILT------SPPVWAIWISAFGGNWGFYL 276 (466)
T ss_pred ------------------cCCCCCHHHHHHHHhcccccccCCC-CCCCHHHHHc------CHHHHHHHHHHHHHHHHHHH
Confidence 2333344455555444332222211 4567776655 56677888888888888899
Q ss_pred eccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--------h-hhhhhhHHHHHHHHHHHHHHHH
Q 010273 310 TVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRK--------P-LLYVSTIGMTICLLSLSLSLTF 380 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--------~-~~~~~~~~~~~~~~~~~~~~~~ 380 (514)
+..|.|.|+++..+.+....++.+..+.+...+..+++|.++||..+| | .-.++....+++++.+.+..
T Consensus 277 l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~-- 354 (466)
T KOG2532|consen 277 LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS-- 354 (466)
T ss_pred HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC--
Confidence 999999999999889999999999999999999999999999998653 1 12223333333333332221
Q ss_pred hcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCcE
Q 010273 381 LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH---AITVGGT 457 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~ 457 (514)
..........+.......++...|. +.-..+. .+++.+..+|+.+....+.++++|.+.+.+.. ...|+..
T Consensus 355 -~~~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~V 428 (466)
T KOG2532|consen 355 -DEHRLLAVILLTIAIGLSGFNISGF----YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIV 428 (466)
T ss_pred -CCcchHHHHHHHHHHHHcccchhhh----Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHH
Confidence 1111111111222222222222221 1222332 35788999999999999999999999999883 3468889
Q ss_pred ehhhHHHHHHHHHHhhhc
Q 010273 458 FFVFSLISALSVAFVYKC 475 (514)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (514)
|++.+++.+++.++..++
T Consensus 429 F~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 429 FLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHhchheeEe
Confidence 999998888888664443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=269.95 Aligned_cols=393 Identities=23% Similarity=0.242 Sum_probs=275.1
Q ss_pred hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccc
Q 010273 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGV 152 (514)
Q Consensus 73 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 152 (514)
.+.++.+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.+++++++|++.+++.|+++|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 46677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHH
Q 010273 153 MIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVM 232 (514)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 232 (514)
.+...++.|++++++|+.++.+ ......+..+++.+++++.. +||+.+++..++.++.++.+++.||+|+|+..
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~ 263 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLS 263 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHH
Confidence 9999999999999999999999 66666666666666666443 89999999999988887777777899999999
Q ss_pred cCCHHHHHHHHHHhccCh---hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhcccee
Q 010273 233 QGRIDEARLVLSKTNESV---KEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDA 309 (514)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
+++.+++.+.+++..+.+ ........... ..........+++..+.++++. +.+++..+........ ....+++
T Consensus 264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~~~~~~~~~~-~~~~y~g 340 (521)
T KOG0255|consen 264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISFLDLFRT-PRLRYRTLYLLFIWFV-FSLVYYG 340 (521)
T ss_pred cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCchhhhhcC-HHHHHHHHHHHHHHHH-HhHHHHh
Confidence 999999999988876533 11111111110 1111111111222346666663 3344444433333311 1111111
Q ss_pred eccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhH
Q 010273 310 TVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIA 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (514)
. +......+. .........+.....+....+...|+.|||.....+..+..++++........... .....
T Consensus 341 l----~~~~~~lg~----~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 411 (521)
T KOG0255|consen 341 L----SLNVSGLGG----NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWI 411 (521)
T ss_pred h----hhhhhhcCc----hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHH
Confidence 1 111122221 11233333445777778888999999999999999988888888877766542211 00111
Q ss_pred HHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHH
Q 010273 390 LAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSV 469 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 469 (514)
...+... +...+. ...+.+..|++|+..|..+.+.......++++++|.+...... ......+.+++.+..+..
T Consensus 412 ~~~~~~~----~~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~ 485 (521)
T KOG0255|consen 412 LPLLGKF----FIGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLG 485 (521)
T ss_pred HHHHHHH----HHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHH
Confidence 1111111 122222 2447889999999999999999999999999999888754433 222223333466777777
Q ss_pred HHhhhccccCCCCCHHHHHH
Q 010273 470 AFVYKCVPETKGKSLEQIEM 489 (514)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~ 489 (514)
++...++||++++.+.+..+
T Consensus 486 ~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 486 LLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHHhcCcccCCCCCchhHH
Confidence 77678899999988754433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=259.95 Aligned_cols=357 Identities=15% Similarity=0.093 Sum_probs=250.8
Q ss_pred HHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 50 FASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
...++.++...+.....+.+|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 130 LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 130 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
+++|++.+++.|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.. ...|.. ++..
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~~~~-~~~~ 165 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST---ELMSVL-PWVT 165 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cccchH-HHHH
Confidence 999999999999999999998888888888899999999999999999999999999999988432 222222 2222
Q ss_pred hHHHHHHHHHHh-hccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 ILPSVFIALALF-VIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
+..........+ ..+++++ ++ + +..+.++.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~--------------------------------------~~-~---~~~~~~~~~~~~~-- 201 (381)
T PRK03633 166 GLVLAAILPLLFTRILNQQA--------------------------------------EN-H---DSTSIWPMLKLRQ-- 201 (381)
T ss_pred HHHHHHHHHHHHhcccCCCC--------------------------------------CC-C---CCCCHHHHHHhcc--
Confidence 222211111111 1222110 00 0 0011122222111
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMT 368 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 368 (514)
++......+...........+.|.|+++.+.+. ...+.......++.+++.+..|++.||+++|+.+..+.....
T Consensus 202 ----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~ 276 (381)
T PRK03633 202 ----ARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVI 276 (381)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHH
Confidence 111111111111112233457888888765544 444555556778899999999999999999998877766666
Q ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 369 ICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSV 448 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 448 (514)
++...+. .. .. ....... .+.......|...+...|..|+++++.+.+..+...++|..++|.+.|.+
T Consensus 277 ~~~~~~~--~~------~~-~~~~~~l---~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l 344 (381)
T PRK03633 277 LGSIAML--SQ------AA-MAPALFI---LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAML 344 (381)
T ss_pred HHHHHHh--hh------HH-HHHHHHH---HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544332 11 00 1111111 11222234566777778888888888888888888999999999999999
Q ss_pred HhhhhcCcEehhhHHHHHHHHHH
Q 010273 449 SHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 449 ~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
.|..++...|.+.+.+.++..+.
T Consensus 345 ~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 345 MQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHhCccHHHHHHHHHHHHHHHH
Confidence 99999888787777766655444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=264.22 Aligned_cols=370 Identities=15% Similarity=0.065 Sum_probs=257.3
Q ss_pred HHhhhhhhhhhhhcchhHhhhhhccccChhH-----HHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 010273 52 SLNSVLLGYDVGVMSGAIIFIKEDLKITEVQ-----QEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA 126 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 126 (514)
+++.++..+......+.+|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 3344555667778888999999999988654 48999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 127 IMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
+++++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..+++.+++.+ .+..+||+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~ 175 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL---ADSYGLRPVF 175 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCHHHHH
Confidence 99999999999999999999865 5677888899999999999999999999999999999999884 3456999999
Q ss_pred hhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 207 GVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
++.++..++..+. .+++||+++. .++ + ++.+.+. ..+.++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~--------------------------------~~~~~~~-~~~~~~~~ 218 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQP---VSK-K--------------------------------EMLHMRE-VVTSLKNP 218 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCccc---ccc-h--------------------------------hhhHHHH-HHHhCcCC
Confidence 9977766655554 4556665320 000 0 0000000 11122212
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNN---ELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV 362 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~ 362 (514)
+.+...... .+...........+.+.|..+.++.... ..+......+++.+++.+..|++.||++||+.+..
T Consensus 219 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~ 293 (408)
T PRK09874 219 KLVLSLFVT-----TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILIT 293 (408)
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 211111111 1111111122334556666654433322 13344444567788888999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIA 442 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 442 (514)
+..+..++.+....... . +. ........+.+.....|...+...+..|++.+|+.+|+.+....+|..++|
T Consensus 294 ~~~~~~~~~~~~~~~~~------~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 294 ALIFSVLLLIPMSFVQT------P--LQ-LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred HHHHHHHHHHHHHHhcc------H--HH-HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence 76665554443332211 1 11 111222222333333455555666777888999999999999999999999
Q ss_pred HHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 443 MSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 443 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
.+.|.+.+..|++..|.+.+++.+++.+..+...
T Consensus 365 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 365 LMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888887777655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=261.65 Aligned_cols=351 Identities=11% Similarity=-0.003 Sum_probs=253.9
Q ss_pred hhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-
Q 010273 54 NSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP- 132 (514)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~- 132 (514)
+.++..+......+.+|.+..+++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677788889989999999999999999999999999999999999999999999999999999999998888
Q ss_pred ----hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 133 ----SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 133 ----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+ .+..+||+.|++
T Consensus 87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l---~~~~g~~~~~~~ 163 (365)
T TIGR00900 87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM---YATLGIKWAIWV 163 (365)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999884 345799999998
Q ss_pred chHHHHHHHHHHhhc--cCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCH
Q 010273 209 GILPSVFIALALFVI--PESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
.++..++..+..+.+ ||+++ +++ ++ . +++..++.+..++..++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-------------~--------------~~~~~~~~~~~~~~~~~~~~ 211 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELAA----SEI-QA-------------L--------------SNAVLRDTREGIKFVLKNPL 211 (365)
T ss_pred HHHHHHHHHHHHHhcccccCCC----ccc-cc-------------c--------------chhHHHHHHhHHHHHHcCcH
Confidence 776666555444333 33221 000 00 0 00000111122333443221
Q ss_pred HHHHHHHHHHHHHHHhhhccceeec-cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 287 AVRRMLITGCGIQCFQQITGIDATV-YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
. +......+.......... .+.|.+.++..+.+....+.......++.+++.++.+++.||++||+.+..+..
T Consensus 212 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (365)
T TIGR00900 212 -L-----RTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF 285 (365)
T ss_pred -H-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 1 111111111111122222 567888776444555566777777889999999999999999999988877665
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSF 445 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 445 (514)
+..++...+..... + .+.. .......++......+...++..|..|++.|+++.|+.+...+++..++|.+.
T Consensus 286 ~~~~~~~~~~~~~~-----~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 286 VIGLAILVVGLTPP-----N--FPLF-LVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHHHHhhch-----h--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544433221 0 1221 22222223333334466678889999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 010273 446 LSVSHAIT 453 (514)
Q Consensus 446 ~~~~~~~g 453 (514)
|.+.|..|
T Consensus 358 g~l~~~~g 365 (365)
T TIGR00900 358 GPLADHLG 365 (365)
T ss_pred HHHHHHcC
Confidence 99988654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=263.87 Aligned_cols=347 Identities=20% Similarity=0.229 Sum_probs=248.3
Q ss_pred HhhhhhhhhhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 010273 53 LNSVLLGYDVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA 131 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 131 (514)
++.++..++.....+..| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344556667888889999 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 132 PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 132 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
+|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++. +.+..+||+.|++.++
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~---l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF---LISYFGWRWAFLISAI 159 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHCHHCCHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhh---hhhccccccccccccc
Confidence 8888999999999999999999999999999999999999999999999999999999998 5567899999999888
Q ss_pred HHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
..++..++ .++++++++....+. +.+++++.+.++.+.+ +...++
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~--~~~~~~ 205 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERES--------------------------------PKESESKKPKPLKPGF--KSLFKN 205 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--S--------------------------------STTTT--HHHCCCH-C--THHHHH
T ss_pred hhhhhhhhHhhhhhhccccccccc--------------------------------cccccccccccccccc--cccccc
Confidence 88777664 345555442100000 0000000111111111 122233
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKG-NNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTI 369 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 369 (514)
+.++......+...........+.|.|+.+..+.+ ....+.......+..+++.++.|++.||+++|+..........+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 206 PVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL 285 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 32222222222222233446678888855544444 45666666767888889999999999999998877776666665
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHH
Q 010273 370 CLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIA 442 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 442 (514)
....+...... + +. ..... .....++......+....+..|..|++++|++.|+.+...++++.++|
T Consensus 286 ~~~~~~~~~~~--~-~~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 286 GALGLLLLPFS--S-SP--VWLII-ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCSHHH--C-HH--HHHHH-HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--h-hH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55554443322 0 00 11111 222223333334567778899999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=261.12 Aligned_cols=366 Identities=11% Similarity=0.054 Sum_probs=250.4
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA 126 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 126 (514)
.++...+..+..++++....+..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34444555567777889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH---HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc-cC-C----
Q 010273 127 IM---TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS-RL-P---- 197 (514)
Q Consensus 127 ~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~-~~-~---- 197 (514)
++ .++++++.++++|+++|++.|...+..+.++.|+.++++|.+.+++.+..+.+|..+|+.+++.+. .. .
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~ 186 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 86 467899999999999999999999999999999887777777899999999999999998876532 00 0
Q ss_pred --------C-C--------ccchhhHhh-chHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHH
Q 010273 198 --------A-H--------INWRVMLGV-GILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLA 258 (514)
Q Consensus 198 --------~-~--------~~Wr~~f~~-~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (514)
+ . .+||++|+. .++..++..+. ...+||.+. +++
T Consensus 187 ~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~----------------------- 239 (438)
T PRK10133 187 DVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH----------------------- 239 (438)
T ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-----------------------
Confidence 0 0 256666754 33333332222 333454321 000
Q ss_pred HHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHh-hhcCCCCchHHHHHHHHHH
Q 010273 259 EIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIF-KGAGIKGNNELLAATVAVG 337 (514)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 337 (514)
..++..+.....+++++++ .++...+..++..........|.+.|+ ++..+.++...+.......
T Consensus 240 --------~~~~~~~~~~~~~~ll~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~ 305 (438)
T PRK10133 240 --------SDAKQGSFSASLSRLARIR------HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_pred --------ccccccchhhhHHHHHhCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 0000000111223333322 111111222222223333445677674 5555666777788888899
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeec
Q 010273 338 FTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEI 417 (514)
Q Consensus 338 ~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (514)
++.++++++++++.||+++|+.+..+..+..+++.+..... . .. . ...+...+++.....|..++...+.
T Consensus 306 ~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~----~-~~--~---~~~~~l~glg~~~i~P~~~s~a~~~ 375 (438)
T PRK10133 306 VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----G-HV--G---LIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC----C-hH--H---HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999988877666554443332211 1 11 1 1122233444555667888888888
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHH
Q 010273 418 FPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLIS 465 (514)
Q Consensus 418 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 465 (514)
.|+ +.+++.++.. ...+|+.++|.+.|.+.|..| .+..|++...+.
T Consensus 376 ~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~ 422 (438)
T PRK10133 376 LGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_pred cch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 764 4677888876 455788999999999999877 555555444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=258.08 Aligned_cols=360 Identities=12% Similarity=0.080 Sum_probs=245.6
Q ss_pred hhhhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHhhh
Q 010273 55 SVLLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIA-LAAIVFQAGAAIMTLAP 132 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~~ 132 (514)
+++.++......|.+|. +++++|.|+.+.|++.+++.+...+.+++.|+++||+|||+.++ .+..+.+++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 44555577777888884 78899999999999999999999999999999999999887655 56666677888899999
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhcccccccccc--chhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhch
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSL--TSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGI 210 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~ 210 (514)
+++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|.++|+.+++.+ .+..+||+.|++.+
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l---~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL---ALGFGFTVMFLTAA 162 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH---HHhcccHHHHHHHH
Confidence 999999999999988888888888899999887777654 5777888899999999999884 44579999999988
Q ss_pred HHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHH
Q 010273 211 LPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVR 289 (514)
Q Consensus 211 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
++.++..+. ++++||.|+....+ + ++...++.++++ ..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~---~~~~~~~~~~~~-~~~ 202 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGAPGA------------------------------------L---TRLEVRGLLASR-DTR 202 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCcccc------------------------------------c---CcchhhhhhcCc-chH
Confidence 776665554 55588876410000 0 000011122211 111
Q ss_pred HHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 010273 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTI 369 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 369 (514)
...... +...........+.|.++.+..+.+....+..........+++.++.|++.||++||+.+..+.++..+
T Consensus 203 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 277 (375)
T TIGR00899 203 LLFVAC-----TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA 277 (375)
T ss_pred HHHHHH-----HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence 111111 111111122334567776554444444555555555566777889999999999999988776555444
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 370 CLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 449 (514)
....+..... . +.... .....++......+....+..|..|+ +++++.|+.+...++|..++|.+.|.+.
T Consensus 278 ~~~~~~~~~~------~--~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 278 FYTGLAADNS------L--WALLM-LQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHH------H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222111 1 11111 11111222222234555667788775 5679999999999999999999999999
Q ss_pred hhhhcCcEehhhHHHHHHHHHHh
Q 010273 450 HAITVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 450 ~~~g~~~~~~~~~~~~~~~~~~~ 472 (514)
+..|++..+++.+++.+++.+..
T Consensus 348 ~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 348 ERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HhccchhHHHHHHHHHHHHHHHH
Confidence 99898888888877777666654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=253.97 Aligned_cols=343 Identities=24% Similarity=0.304 Sum_probs=279.6
Q ss_pred HHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 010273 52 SLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA 131 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 131 (514)
.+..+...++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 34455666688888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 132 PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 132 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+. +..+||+.|++.++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~ 161 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA---ESLGWRWLFLILAI 161 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999843 45689999999877
Q ss_pred HHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHH
Q 010273 212 PSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRM 291 (514)
Q Consensus 212 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (514)
..++..+...+++ |
T Consensus 162 ~~~~~~~~~~~~~--~---------------------------------------------------------------- 175 (352)
T cd06174 162 LGLLLALLLLFLL--R---------------------------------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHH--H----------------------------------------------------------------
Confidence 7776655544332 0
Q ss_pred HHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hhhhhhHHHHHH
Q 010273 292 LITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKP-LLYVSTIGMTIC 370 (514)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~-~~~~~~~~~~~~ 370 (514)
.++......+...........+.|.+.++..+.+....+.......++.+++.++.+++.||++||+ .+..+..+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1112222233333344455668888888764556667777788888999999999999999999999 888887777777
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
...+..... ...........+.......+....+..|..|+++|++.+|+.+...+++..+++.+.+.+.+
T Consensus 256 ~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 256 LLLLALAPS---------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHhcc---------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666554322 12222233334444445567778899999999999999999999999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHHHHh
Q 010273 451 AITVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~ 472 (514)
..+++..+.+.+++.+++.+..
T Consensus 327 ~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ccCcchHHHHHHHHHHHHHHHh
Confidence 8899888888888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=254.12 Aligned_cols=341 Identities=15% Similarity=0.135 Sum_probs=242.0
Q ss_pred hhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010273 57 LLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAV 136 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (514)
...+....+.|..|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQ 96 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 33446778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ .++.+||+.|++.++..++.
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l---~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL---LNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHH
Confidence 999999999998888888888999999999999999998888999999999999884 45679999999887777776
Q ss_pred HHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHH
Q 010273 217 ALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGC 296 (514)
Q Consensus 217 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (514)
.+..++++|+++. + ++++++..+++.++.++.+........
T Consensus 174 ~~~~~~~~~~~~~----~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (401)
T PRK11043 174 ILPTLRLKPSKKA----R-----------------------------------KQSQDALTFKQLLKSKTYLGNVLIFAA 214 (401)
T ss_pred HHHHHHcCCCCCc----c-----------------------------------ccchHHHHHHHHHcChhHHHHHHHHHH
Confidence 6665566655420 0 000111233444442222111111111
Q ss_pred HHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 010273 297 GIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSL 376 (514)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 376 (514)
.. ..+.....+.|.++++.+. +....+.......++.+++.++.+++.||+++|+......+...++...+..
T Consensus 215 ~~------~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 287 (401)
T PRK11043 215 CS------AAFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWL 287 (401)
T ss_pred HH------HHHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122334567888877654 4455566666677788889999999999999888766555554444433322
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 377 SLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
......+ .. ...+. .....+.......|.......+..| +.++++.|+.+.....++..++.+.+.+.+.
T Consensus 288 ~~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 288 ASLLSHP-SL--VPLLI-PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHhccC-cH--HHHHH-HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 2221111 11 11111 1112222223334555555556655 5799999999999998999999999888764
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=255.24 Aligned_cols=349 Identities=16% Similarity=0.177 Sum_probs=233.4
Q ss_pred hhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010273 57 LLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAV 136 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (514)
..........+.+|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33445556668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ .+..+||+.|++.++..++.
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l---~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI---MLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCcChHHHHHHHHHHHHHH
Confidence 999999999999988999999999999999999999999999999999999998874 34579999999977666655
Q ss_pred HHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHH
Q 010273 217 ALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITG 295 (514)
Q Consensus 217 ~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (514)
.+. .+++||+++. +++ ++.......++.+++++.+.......
T Consensus 171 ~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (392)
T PRK10473 171 LLLSLFILKETRPA---RAP----------------------------------AASSKPRENSESLLNRFFLSRLVITT 213 (392)
T ss_pred HHHHHHHcCCCCCc---ccC----------------------------------CccchHHHHHHHHhCHHHHHHHHHHH
Confidence 544 5566776420 000 00000011112222121111111111
Q ss_pred HHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 010273 296 CGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLS 375 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 375 (514)
+... .......+.|.++++..+.+....+......+++.+++.++.+++.||+++|+.+..+..+..++..++.
T Consensus 214 ~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 214 LSVT------VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHH------HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1112233456666554344555566666678889999999999999999999988888777666665555
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 376 LSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
...... .......... . +...+. +. ....+..|.+.|+ |.......++..+++.+.+.+.+..|+.
T Consensus 288 ~~~~~~------~~~~~~~l~~-~-g~~~~~-~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 288 LSPSHA------VSLFGITLIC-A-GFSVGF-GV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHHH------HHHHHHHHHH-H-HHHHHh-HH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 433210 0111111111 1 111111 11 1223333443332 3334445566667777777777777765
Q ss_pred cEehhhHHHH
Q 010273 456 GTFFVFSLIS 465 (514)
Q Consensus 456 ~~~~~~~~~~ 465 (514)
....+.+.+.
T Consensus 354 ~~~~~~~~~~ 363 (392)
T PRK10473 354 AWNMLIGILI 363 (392)
T ss_pred hhHHHHHHHH
Confidence 5444444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=254.51 Aligned_cols=360 Identities=14% Similarity=0.136 Sum_probs=238.5
Q ss_pred chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHH
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT---L-APSFAVLIIGR 141 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~r 141 (514)
.+.++.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++. + .++++.+++.|
T Consensus 33 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 33 QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 3455556688999999999999999999999999999999999999999999999999877653 3 25788999999
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHH-HHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGI-LLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA- 219 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~- 219 (514)
+++|++.+...+...+.+.+++|+++|++++|+..++.++|. ++++.+++. +.+..||+..+|......++..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~---l~~~~g~~~~~~~~~~~~~~~~~~~ 189 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY---AIPAFGEMNTLWSALAFVLTGGVIA 189 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHHHHHHH
Confidence 999999988888888889999999999999999999999997 578888877 444568766655533333332222
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
.++.++.++ .++.+ + +++.++.+..++..++ ++.++.....
T Consensus 190 ~~~~~~~~~----~~~~~----------~-------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~ 230 (402)
T TIGR00897 190 LFSNKDIFT----PQHMQ----------T-------------------REKFSELGKAATILFT------NPNVLLGGMV 230 (402)
T ss_pred HhccCCCCC----ccccc----------C-------------------CcchhhHHHHHHHHHc------ChhHHHHHHH
Confidence 333444321 00000 0 0000001112233333 2333333333
Q ss_pred HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh-hhHHHHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV-STIGMTICLLSLSLSL 378 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~-~~~~~~~~~~~~~~~~ 378 (514)
.+......+....|.|.|+++.+.+.. ..+.......++.+++.+..|+++||++||+.... ..+...++...+....
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~ 309 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTS-EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIP 309 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566789999888665544 44555555778999999999999999998886642 2223333222222211
Q ss_pred HHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEe
Q 010273 379 TFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTF 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 458 (514)
....+ .. +...... ...+.+..+..+. .....|. ++++|+++.|+.+...++++.++|.+.+.+.+..|+...+
T Consensus 310 ~~~~~-~~--~~~~~~~-~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~ 383 (402)
T TIGR00897 310 QHFGH-SF--AVALIIA-IALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVV 383 (402)
T ss_pred HccCC-cH--HHHHHHH-HHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 11011 11 1111111 1111221122232 2344565 4568999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHHHHhhh
Q 010273 459 FVFSLISALSVAFVYK 474 (514)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (514)
++.+++.+++.+...+
T Consensus 384 ~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 384 WIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777776655433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=250.65 Aligned_cols=370 Identities=13% Similarity=-0.013 Sum_probs=246.8
Q ss_pred HhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 010273 53 LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP 132 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 132 (514)
++.++..+.........+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.+++++++++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444555666677899999999999999999999999999999999999999999999999999999888877
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHH
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~ 212 (514)
+. ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++.+.+ ..|+..+.+.+..
T Consensus 90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~ 162 (393)
T PRK11195 90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALI 162 (393)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 64 7889999999999999999999999999999999999999999999999999999654 2477777766655
Q ss_pred HHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHH
Q 010273 213 SVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML 292 (514)
Q Consensus 213 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
.++..+..+.+||+|+....+ +.++ . .... +....++.+++++ ..+...
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~~-~~~~-~--------------~~~~--------------~~~~~~~~l~~~~-~~~~~~ 211 (393)
T PRK11195 163 YLLAALFNLFIPRLGARRPGQ-SWNP-I--------------ALLR--------------DFFHACRVLWRDK-LGRFSL 211 (393)
T ss_pred HHHHHHHHhcCCCCccccccc-CCCH-H--------------HHHH--------------HHHHHHHHHHhCc-hhHHHH
Confidence 555555566788765310000 0000 0 0000 0011122333322 222111
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
. ...+... ......+..|.++++..+.++...+......+++.+++.+..+++.||.++++.+..+. +..+...
T Consensus 212 ~-~~~~~~~----~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~ 285 (393)
T PRK11195 212 A-GTTLFWG----AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVL 285 (393)
T ss_pred H-HHHHHHH----HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHH
Confidence 1 1111111 11123334556666655566667788888888999999999999999988887766653 2222222
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL-RAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
.+.... +. +.... .....+++.....+...+...+..|++. +|.+.|+.+...+++..++..+.+.+ +.
T Consensus 286 ~~~~~~------~~--~~~~~-~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~ 355 (393)
T PRK11195 286 LMALQH------SL--LPAYP-LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VK 355 (393)
T ss_pred HHHHHh------HH--HHHHH-HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HH
Confidence 222111 11 11111 1212222222222334455667655544 69999999999999999999998855 67
Q ss_pred hhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 452 ITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 452 ~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
.|.+..+.+.+...+++..+.+.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 356 LGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7877777766666666555544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=249.83 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=230.8
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLII 139 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (514)
......+.++ ++++++|.|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL 104 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3344444544 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 140 GRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 140 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
.|+++|++.+...|...+++.|++|+++|++++++.....++|..+||.+++.+. +.+||+.|++.++..++..+.
T Consensus 105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999999854 369999999977666555443
Q ss_pred -HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHH
Q 010273 220 -LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGI 298 (514)
Q Consensus 220 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (514)
.+++||.+. .+ .+++.+..+++.+++++.+. ..+....
T Consensus 181 ~~~~~~~~~~-----~~----------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 219 (400)
T PRK11646 181 NAWLLPAYKL-----ST----------------------------------VRTPVREGMTRVLRDKRFVT-YVLTLTG- 219 (400)
T ss_pred HHHhCCcccc-----cc----------------------------------cchhhHHHHHHHHcCchHHH-HHHHHHH-
Confidence 444554221 00 00001122334444222221 1111111
Q ss_pred HHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhhhhhHHHHHHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILID-KVGRKPLLYVSTIGMTICLLSLSLS 377 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~~~~~~~~~~~~~~~~~ 377 (514)
..........+.|.++++.++.+ ...+.......+....+....+++.| |++.++.+..+.++..++..++...
T Consensus 220 ----~~~~~~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
T PRK11646 220 ----YYMLAVQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV 294 (400)
T ss_pred ----HHHHHHHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 11111122346788888877654 44555555455555544444455554 5565555555555555554444322
Q ss_pred HHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010273 378 LTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 453 (514)
.. . ....... ...+.......|...++..+..|++.||+++|+.+....+|..++|.+.|.+.|..+
T Consensus 295 ~~------~--~~~~~~~-~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 295 SN------L--QQLFTLI-CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred hh------H--HHHHHHH-HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 21 1 1111111 111122223335566778899999999999999999999999999999999998753
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=249.79 Aligned_cols=335 Identities=16% Similarity=0.158 Sum_probs=230.0
Q ss_pred hhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 61 DVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
....+.|..|.+.+++|+|+++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA- 219 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~- 219 (514)
|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+ .+..+||+.|++.++..++..+.
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL---LVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999884 34569999999877666665444
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
.+++||+++. ++. ++.+.++....+++.++.++ ++...+.
T Consensus 163 ~~~~~~~~~~----~~~------------------------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 202 (377)
T PRK11102 163 FFFIPETLPK----ERR------------------------------QPFHLRTTIRNFASLFRHKR------VLGYMLA 202 (377)
T ss_pred HHhCCccCcc----ccc------------------------------CCCChHHHHHHHHHHHcChH------HHHHHHH
Confidence 5567775420 000 00000011122333343222 1111222
Q ss_pred HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLT 379 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 379 (514)
.+..+.+......+.|.++.+..+.+....+.......++.+++.++.+++.||+++|+.+..+..+..+....+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 282 (377)
T PRK11102 203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL 282 (377)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333445566665544445566677777788999999999999999999999888776654443333222211
Q ss_pred HhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHH-HHHHHHHHH
Q 010273 380 FLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSR-VSSGAIAMS 444 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 444 (514)
.. . . .+...+......+.. ....+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 283 ~~-~-~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 283 LD-L-G--FWALVVGVAAFVGCV-SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred Hh-h-h--HHHHHHHHHHHHHHH-HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0 111111111111111 1112233344566655 788999998876654 444445544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-31 Score=253.70 Aligned_cols=362 Identities=19% Similarity=0.225 Sum_probs=242.2
Q ss_pred hhhhhhhhhcchhHhhhhhccc--cChhHHHHHHHH-----HHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 56 VLLGYDVGVMSGAIIFIKEDLK--ITEVQQEVLVGI-----LSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
+.+++|+..++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888887764 445566655443 233345789999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC----
Q 010273 129 TLAPSFA--------VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL---- 196 (514)
Q Consensus 129 ~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~---- 196 (514)
+++++++ .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.++++.++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 4788999999999999999999999999999999999999999999999998887664321
Q ss_pred -CCCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHH
Q 010273 197 -PAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEK 275 (514)
Q Consensus 197 -~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (514)
.+..+||+.|++.++..++.......+||++++...++ ++++.+
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 207 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-----------------------------------KHKKKR 207 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-----------------------------------cccccc
Confidence 13469999999877766665555566777664211000 000001
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010273 276 AVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVG 355 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 355 (514)
.+.++.+++++ +.++......+...........+.|.++++..+.+....+.......+..+++.++.|+++||++
T Consensus 208 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 208 GPIRETLTKHR----KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG 283 (394)
T ss_pred CCHHHHHHhch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222222111 11222222223333334455567888886544445555666666678889999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHH
Q 010273 356 RKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGS 434 (514)
Q Consensus 356 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~ 434 (514)
||+.+.....+..+.......... ..... +.... .....++......+...++..|.+|++.|+++.|+. +...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 358 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMALL--DSGSF--TLFFF-LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAG 358 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--cCCch--HHHHH-HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHH
Confidence 998776554443332211111111 11111 11111 112222222233456678889999999999999985 4555
Q ss_pred HHHHHHHHHHHHHHHhhhh-cCcEehhh
Q 010273 435 RVSSGAIAMSFLSVSHAIT-VGGTFFVF 461 (514)
Q Consensus 435 ~~g~~~~~~~~~~~~~~~g-~~~~~~~~ 461 (514)
.+|..++|.+.|.+.+..| +...++..
T Consensus 359 ~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 359 AIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred HHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 6788899999999999887 54443333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=245.63 Aligned_cols=342 Identities=17% Similarity=0.115 Sum_probs=233.4
Q ss_pred hhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 56 VLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
....+......+.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++.++++++
T Consensus 18 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 97 (394)
T PRK11652 18 AVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLT 97 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 34445677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
.+++.|++.|++.+...+....+..|++++++++++.++...+..+|..++|.+++.+ .+..+||+.|++.++..++
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l---~~~~g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL---TTLFGWRACYLFLLLLGAG 174 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccChHHHHHHHHHHHHH
Confidence 9999999999999888888888999999999999999999999999999999999884 3457999999997766655
Q ss_pred HHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHH
Q 010273 216 IAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLIT 294 (514)
Q Consensus 216 ~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
..+ ..+++||+++. + +++.+.+..++..++++ ..+.....
T Consensus 175 ~~~~~~~~~~~~~~~----~----------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 215 (394)
T PRK11652 175 VTFSMARWMPETRPA----D----------------------------------ARRTRVLASYRTLLSNR-RFNCYLLM 215 (394)
T ss_pred HHHHHHHhCCccCcc----c----------------------------------cchhHHHHHHHHHHcCh-HHHHHHHH
Confidence 443 35567776530 0 00001122333344422 22211111
Q ss_pred HHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 010273 295 GCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSL 374 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 374 (514)
. +...........+.+.++++..+.+....++......++.+++.++.+++.||++++.. .......++...+
T Consensus 216 ~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 288 (394)
T PRK11652 216 L-----IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLM 288 (394)
T ss_pred H-----HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1 11111122223345666666444455555666666677788888888888888873222 2222222222222
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 375 SLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
...... ..... +.. .......++......|...++..|.+| +.++++.++.+....+|+.+++.+.+.+.+.
T Consensus 289 ~~~~~~-~~~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 289 WIPGWF-GVMNV--WTL-LVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHh-ccccH--HHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 111111 01111 111 111122222222344566666778776 6789999999999999999999988877554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=247.87 Aligned_cols=348 Identities=12% Similarity=0.050 Sum_probs=243.6
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
.++++..+..++..+..++..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||++++.+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 44555666777788888999999999999999999999999999999999999999999999999999999999999886
Q ss_pred Hh---hhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC--------
Q 010273 129 TL---APSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP-------- 197 (514)
Q Consensus 129 ~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-------- 197 (514)
.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+|+.+++.+....
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 3689999999999999999999999999999999999999999999999999999999987753110
Q ss_pred ---------------CCccchhhHhhchHHHHHHHHHHhh--ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHH
Q 010273 198 ---------------AHINWRVMLGVGILPSVFIALALFV--IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEI 260 (514)
Q Consensus 198 ---------------~~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (514)
+..+||++|++.+++.++..++..+ +||.++ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~----------------------- 214 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S----------------------- 214 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c-----------------------
Confidence 1136999998877766655444333 333211 0
Q ss_pred HHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCC-CCchHHHHHHHHHHHH
Q 010273 261 QVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGI-KGNNELLAATVAVGFT 339 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 339 (514)
+ +++...+...++.+++ +.++...+..++..........+++.|.++.+. .+..............
T Consensus 215 ------~-~~~~~~~~~~~~~~~~------~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~ 281 (410)
T TIGR00885 215 ------D-AKQISFSASLSRLARI------RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVI 281 (410)
T ss_pred ------c-cccccchhhHHHHHhC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 0 0000001112223331 112222222233333333445678888766432 2222223233334577
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC
Q 010273 340 KTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP 419 (514)
Q Consensus 340 ~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 419 (514)
..+++++++++.||+++|+.+.+..++..++.++...... .... ......+++....+|..++...+..+
T Consensus 282 ~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---------~~~~-~~l~~~glf~s~~fp~i~sl~~~~~g 351 (410)
T TIGR00885 282 FFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---------HVGL-YCLTLCSAFMSLMFPTIYGIALKGLG 351 (410)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---------hHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999999887776666665555443211 1111 22222234444555888888888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 420 LRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 420 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
++.+..+.++.... +|++++|.+.|.+.|..
T Consensus 352 ~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 352 QDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 76654455554443 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=244.31 Aligned_cols=357 Identities=11% Similarity=0.092 Sum_probs=225.0
Q ss_pred hhhhhhhhcchhHh-hhhhccccChhHHHHHHHHHHH-HHHHHHHhHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHhhhh
Q 010273 57 LLGYDVGVMSGAII-FIKEDLKITEVQQEVLVGILSI-ISLFGSLAGGKTSDVLGRKWTI-ALAAIVFQAGAAIMTLAPS 133 (514)
Q Consensus 57 ~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~ 133 (514)
+.++......|.+| ++.+++|+|.+++|++.+...+ ++.++++++++ +||+|||+.+ +.+.++.+++..+.+++++
T Consensus 26 ~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 104 (393)
T PRK15011 26 LTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN 104 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence 33345555566666 4789999999999999876655 66666655666 9999998764 5666777788888899999
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhhcccccccc--ccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 134 FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARG--SLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 134 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
++.+++.+.+.|...+...|...+++.++.++++|. ...++.+++.++|.++||++++.+ .++.|||+.|++.++
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l---~~~~gw~~~f~~~~~ 181 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL---AMGFSFTVMYLSAAV 181 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH---HHhcChHHHHHHHHH
Confidence 998876665555445567888888888887766553 345788889999999999999984 445799999999877
Q ss_pred HHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
..++..+. ++++||.++- ++.+ . .+.+ ...+.++....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~----~~~~-----------------------------~-~~~~-------~~~~~~~~~~~ 220 (393)
T PRK15011 182 AFIVCGVMVWLFLPSMRKE----LPLA-----------------------------T-GTLE-------APRRNRRDTLL 220 (393)
T ss_pred HHHHHHHHHHhhcCccCCC----Cccc-----------------------------c-cccc-------ccccccccHHH
Confidence 66655544 5567876520 0000 0 0000 00000011111
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
... . .............+.|.|+++..+.+....+.......+..+++.++.|+++||++||+.+..+.....+.
T Consensus 221 ~~~----~-~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 221 LFV----I-CTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred HHH----H-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 111 1 11111122233457888886654445555555555556777888999999999999998776654443333
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
....... +.. ...+..... .++......+....+..|.+|+ .+++++++.+...++|..++|.+.|.+.+
T Consensus 296 ~~~~~~~-----~~~---~~~l~~~~l-~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 296 YAGMLMA-----HSP---AILLGLQLL-NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHH-----hhH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 111 111111110 1010001111223455788775 58999999999999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHHHHhh
Q 010273 451 AITVGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~ 473 (514)
..|++..+.+.+++.+++.+..+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 366 IWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 88988887777766666655543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=250.69 Aligned_cols=370 Identities=12% Similarity=0.014 Sum_probs=249.2
Q ss_pred hhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hhHHH-HHHHHHHHHHHHHHHH
Q 010273 56 VLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-----GRKWT-IALAAIVFQAGAAIMT 129 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~ 129 (514)
+..++.....++.+|...++.|.+.++++.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.+++..+++
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a 99 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3445577788889999899999999999997 4444444 6899999999999 98874 7788888888888877
Q ss_pred hh---hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 130 LA---PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 130 ~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
+. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ...|||..|
T Consensus 100 ~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~--~~~GWr~~f 177 (491)
T PRK11010 100 FLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD--RYLGWQGMY 177 (491)
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCHHHHH
Confidence 75 4788999999999999999999999999999999999999999999999999999988887432 136999999
Q ss_pred hhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCH
Q 010273 207 GVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
++.++..++..+..+++||+++.. .+ ++ ..++....++++.+++++
T Consensus 178 ~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~------------------------------~~~~~~~~~l~~~~~~~~ 223 (491)
T PRK11010 178 WLMAALLIPCIIATLLAPEPTDTI---PV-PK------------------------------TLEQAVVAPLRDFFGRNN 223 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccc---cc-cc------------------------------chhhhHHHHHHHHHcCcC
Confidence 998877777666666678765310 00 00 000001123444444222
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAAT-VAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
.+...... +...........+.+.++.+..+.+....+... ....++.+++.+++|+++||+++|+.+.++.+
T Consensus 224 ~~~~ll~~------~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~ 297 (491)
T PRK11010 224 AWLILLLI------VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGI 297 (491)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 21111111 111111222234556666543344555555554 44557889999999999999999887776555
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHH-HHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSV-CGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMS 444 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 444 (514)
+..+....+..... ..+ +.......... .+..+... +..+++..+..+++.+++..|+.+....+|..+++.+
T Consensus 298 l~~l~~l~~~~l~~-~~~-~~~~l~~~~~l~~~~~g~~~----~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 298 LQGVSNAGYWLLSI-TDK-NLYSMGAAVFFENLCGGMGT----AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred HHHHHHHHHHHHHh-ccc-cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333322111 111 11111111111 11111111 2345667777888889999999999999999999999
Q ss_pred HHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 445 FLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 445 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
.|.+.|..||+..|.+.+++.+.+.+.....
T Consensus 372 ~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 372 AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888777777776665443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=244.55 Aligned_cols=359 Identities=12% Similarity=0.052 Sum_probs=243.5
Q ss_pred hhhhhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010273 58 LGYDVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAV 136 (514)
Q Consensus 58 ~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (514)
.........+.+| ++.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++.+++++++.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL 98 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3335555555554 677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
+++.|++.|.+.+...+...++..|.+|+++|++++++.....++|.++||.+++.+.. .+||..|++.++..++.
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHH
Confidence 99999999988887888889999999999999999999999999999999999998542 58999999877776665
Q ss_pred HHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHH
Q 010273 217 ALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITG 295 (514)
Q Consensus 217 ~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (514)
.+. .+++||+++. ++ + +++ +....++.++ ++.++.
T Consensus 175 ~i~~~~~~~~~~~~----~~-~--------------------------------~~~-~~~~~~~~~~------~~~~~~ 210 (395)
T PRK10054 175 LVFIQIWVQRSEKA----IA-T--------------------------------ETG-SVWSPSVLLQ------DKALLW 210 (395)
T ss_pred HHHHHHHHhccccc----cc-c--------------------------------chh-hhhhhhhhcc------CceehH
Confidence 444 4445554320 00 0 000 0001122232 122221
Q ss_pred HHHHHHhhhccceeeccchHHHhhhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 010273 296 CGIQCFQQITGIDATVYYSPTIFKGAG--IKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLS 373 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 373 (514)
.....++..........+.+.++.... ..+....+.......+.........|++.||.++|+.+..+..+..++...
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (395)
T PRK10054 211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVG 290 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 111111111111122234444443221 122233444444455555566678889999999999888777666666554
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010273 374 LSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 453 (514)
+..... +. +...+ .....+.......|...+.+.+..|++.++++.+..+ ...+|..++|.+.|.+.|..|
T Consensus 291 ~~~~~~-----~~--~~~~~-~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 291 FIFSGN-----SL--LLWGM-SAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred HHHcch-----HH--HHHHH-HHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 433211 11 11111 1122222222334566667788889999999988755 677899999999999999998
Q ss_pred cCcEehhhHHHHHHHHHHhh
Q 010273 454 VGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (514)
+...+++.+++..+..++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 362 PWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 87777666655555554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=246.56 Aligned_cols=349 Identities=16% Similarity=0.124 Sum_probs=229.2
Q ss_pred HHHhhhhhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 51 ASLNSVLLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
.+++.+....+...+.+..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 334444445577788999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC-------CCCcc
Q 010273 130 LAP-SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL-------PAHIN 201 (514)
Q Consensus 130 ~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~-------~~~~~ 201 (514)
+++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+... .++.+
T Consensus 86 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 86 LAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999 99999999999999866 4566788999999999999999999988888887777776553321 02358
Q ss_pred chhhHhh-chHHHHH-HHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHH
Q 010273 202 WRVMLGV-GILPSVF-IALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279 (514)
Q Consensus 202 Wr~~f~~-~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (514)
||+.|++ .++...+ ..+...+.+|+|+. ++ ++.+.. ..... ...++ +......
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~---~~~~~----------------~~~~~-~~~~~~~ 219 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTPPG----KP-ATGKLS---FKGAR----------------WSVGT-GALGDQL 219 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCCcc----cc-cchhcc---ccccc----------------ccccc-hhHHHHH
Confidence 9999944 3444333 33445556666531 00 000000 00000 00000 0001122
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 010273 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPL 359 (514)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~ 359 (514)
+.++ ++.++...+..+...........+.|.|+++..+.+....+.......+..+++.++.|+++||+++|+.
T Consensus 220 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 220 KVFR------DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK 293 (366)
T ss_pred HHHh------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence 2222 2222222233333333344556788888877655555666666666788899999999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHH
Q 010273 360 LYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVS 437 (514)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 437 (514)
+..+.....++..++..... .+.. ...............+ ...+..+....+..| +++|+++|+.+..+++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 294 LLMSFLGVAMGAFLVVLGLV--SPLS--LAVFIVLFVALFFFSG-AGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHHHhcCC--Ccch--HHHHHHHHHHHHHHhc-cccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 77666555554444432211 0001 1111111111111121 222345577778876 68999999999888765
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=238.29 Aligned_cols=358 Identities=13% Similarity=0.013 Sum_probs=249.1
Q ss_pred HhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHH----HHHHHHHHHHHHHH
Q 010273 53 LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTI----ALAAIVFQAGAAIM 128 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~~~ 128 (514)
+.++..++......|.+|.+.+++|.|..++|++.+++.+...++++++|+++||+||++.. ..+..+..+ .++
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 33445555678888999999999999999999999999999999999999999999985433 233222222 244
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
..+++++.+++.|+++|.+.+...|...++..++ +++|+++++......++|.+++|++++. +.++.|||..|++
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~---l~~~~g~~~~f~~ 163 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGG---LIGMFDEQNILAI 163 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHH---HHHHcChhHHHHH
Confidence 5678999999999999999988889988887664 4788999999999999999999999988 4456799999988
Q ss_pred chHHHHHHHHHHhhccCCh-hHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 209 GILPSVFIALALFVIPESP-RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
..+..++..+ .+.++|++ +. ++ + ++++.++....++.++
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~----~~-~------------------------------~~~~~~~~~~~~~~l~---- 203 (382)
T TIGR00902 164 LTAGLAFMLI-GFLIKPTIPPK----DA-I------------------------------PEDESQGDSAFIALLK---- 203 (382)
T ss_pred HHHHHHHHHH-HHHcCCCCCCC----cc-c------------------------------cccccccchhHHHHHc----
Confidence 6554333333 33334432 10 00 0 0000011112333443
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 367 (514)
++.++......++..........+.|.++++.+.+.. ..+.......+..+++..+.+++.||+++|+.+..+.+..
T Consensus 204 --~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~-~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 204 --NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISAS-ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIAC 280 (382)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHh-HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHH
Confidence 3333433344444444455666788888888665554 4455555688888999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH-HHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA-VGSRVSSGAIAMSFL 446 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~ 446 (514)
.+....+..... ...++......+.......+....++.+. |++.++++.++.+ ....+|..+++.+.|
T Consensus 281 ~~~~~~~~~~~~---------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G 350 (382)
T TIGR00902 281 VGRWAIIGAIEA---------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG 350 (382)
T ss_pred HHHHHHHHhHhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766654332 11122222222222233334556677777 8889999999986 456789999999999
Q ss_pred HHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 447 SVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 447 ~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
.+.|..|+ ..|+..+++.+++.++
T Consensus 351 ~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 351 FIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999886 5577777766655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=241.10 Aligned_cols=372 Identities=10% Similarity=0.003 Sum_probs=240.6
Q ss_pred hhhhhhhhhc-chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhh
Q 010273 56 VLLGYDVGVM-SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG-RKWTIALAAIVFQAGAAIMTLAPS 133 (514)
Q Consensus 56 ~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~ 133 (514)
++.+....+. ++..+.+.+++|++..++|++.+++.++..++++++|+++||+| ||+++.++.++.+++..+..+.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334455555 55566788899999999999999999999999999999999996 488999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhhc--------cccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 134 FAVLIIGRLLAGVGIGFGVMIAPLYIAEI--------SPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 134 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
++.+++.|++.|++.+...+...++..++ .....|.+.+| .+|.++|+.+++.+. ....|+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~---~~~~~~~- 161 (418)
T TIGR00889 92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD---IELSNIQ- 161 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc---ccchhHH-
Confidence 99999999999998877777665553222 22234455555 367778888887742 2234554
Q ss_pred HhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 206 LGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
|++.++..++..+..+++||+|+- .+.+ +...++..+...++.+|.+
T Consensus 162 f~~~~~~~~~~~~~~~~~~e~~~~----~~~~-----------------------------~~~~~~~~~~~~~~~~k~~ 208 (418)
T TIGR00889 162 LYITAGSSALLGVFALTLPDIPVA----KSTA-----------------------------KMSIKVMLGLDAFILFKNK 208 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC----cccc-----------------------------ccCHHHHhhhhHHHHhcCC
Confidence 445554455555556678887630 0000 0000000011122333322
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKG-------NNELLAATVAVGFTKTIFILIAIILIDKVGRKP 358 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 358 (514)
+ ++.+....+...........+.+.++++.+.+. ....+.......+..+++.+..|+++||+|+|+
T Consensus 209 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~ 282 (418)
T TIGR00889 209 R------MAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK 282 (418)
T ss_pred C------eeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 2 111111122111112223345677777665432 234455566677888899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH-HHHHHH
Q 010273 359 LLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA-VGSRVS 437 (514)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g 437 (514)
.+..+.++..++..++..... .....+. ++......+.......+....++.|.+|++.|++++|+.+ ....+|
T Consensus 283 ~l~~~~~~~~v~~~l~~~~~~----~~~~~~~-l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg 357 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYGDP----EYFGYAL-LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG 357 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCc----chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence 998888877766554443110 0001111 1111222222222223455577889999999999999997 567899
Q ss_pred HHHHHHHHHHHHhhh------hcCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 438 SGAIAMSFLSVSHAI------TVGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 438 ~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
.+++|.+.|.+.+.. ||+..|.+.+++.++..+..+++.+++++
T Consensus 358 ~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 358 SLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999974 46777888888878877777777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=238.73 Aligned_cols=391 Identities=17% Similarity=0.128 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH
Q 010273 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 122 (514)
+.+..+..+++.....++.....+.+++.+..|+|-+ ....|+.+.+.++.++++++.|+++|.||||.+++.+.++..
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 3333333444444444555566677889999999964 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc
Q 010273 123 AGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW 202 (514)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W 202 (514)
+|+++++.++|...++++..+.|+|.|... .....++|..|.|.|....++...........++.++.. +..+.+|
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~---~~~~~~W 195 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL---FAAHSGW 195 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH---hccCCCc
Confidence 999999999999999999999999987665 456668999999999887776666555555566677655 3345699
Q ss_pred hhhHhhchHHHHHHHHHHhhccCChhHHHHcCCH---HHHHHHHHHh-------------------c--cChhhHHHHHH
Q 010273 203 RVMLGVGILPSVFIALALFVIPESPRWLVMQGRI---DEARLVLSKT-------------------N--ESVKEVEERLA 258 (514)
Q Consensus 203 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~-------------------~--~~~~~~~~~~~ 258 (514)
||.|++.++...+.++..+++..+|++...+++. .+..+.++.. . ...+...+.+.
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa 275 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA 275 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Confidence 9999997776665554433222233322222211 1111111100 0 00111111111
Q ss_pred HHHHHhc-----cchhhhhhHHHHHHHhhCCCHHHHH-HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCc---hHH
Q 010273 259 EIQVAAG-----SDNAEKNEEKAVWREIINPSPAVRR-MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGN---NEL 329 (514)
Q Consensus 259 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 329 (514)
.+..... .-.+.... .++.+-+.+.+++ +.+...++..+.....++....+.|.........+. ...
T Consensus 276 ~lviG~~~Lv~F~~wE~~~~----~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~ 351 (599)
T PF06609_consen 276 PLVIGFVLLVAFVVWEWFGA----PKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEI 351 (599)
T ss_pred hHHHHHHHHHHHHHhhhhcc----CCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccee
Confidence 1100000 00000000 0111111223332 334443344444444445555566666555444433 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhcccccc
Q 010273 330 LAATVAVGFTKTIFILIAIILIDKVGRK-PLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGP 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
++...+.+++..++.++.|.+..+++|- +.++++..++.+++.++.... .++... ...+..+.. ++......
T Consensus 352 ~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--~~n~~~--~i~~~~l~g---~giG~~~~ 424 (599)
T PF06609_consen 352 GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--PDNKNA--AIAFLVLAG---FGIGGILV 424 (599)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--CCCcch--HHHHHHHHH---HhHHHHHH
Confidence 6677778888889999999999988764 444566555554444443221 122222 222222221 11112222
Q ss_pred ccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 409 VCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 449 (514)
.....+.-..|++.-|++.|+..+++.+|+.++..++..+.
T Consensus 425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455666779999999999999999999999998886544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=233.72 Aligned_cols=333 Identities=16% Similarity=0.115 Sum_probs=231.6
Q ss_pred hhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010273 62 VGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGR 141 (514)
Q Consensus 62 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 141 (514)
....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+ .+++++.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999998888887 778999999999
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
++.|++.+...+....++.|+++ ++|+++++++..+.++|..+++.+++.+.+.. ..+||+.|.+.++..++.. ..
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~~~~--~~ 170 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPALLAL--LA 170 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH--HH
Confidence 99999999888888889999886 68999999999999999999998887743211 1249998887655443332 22
Q ss_pred hccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q 010273 222 VIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCF 301 (514)
Q Consensus 222 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (514)
++|+.++ +.+ + +++..+...++.++ ++.++......+
T Consensus 171 ~~~~~~~----~~~-------------------------------~--~~~~~~~~~~~~~~------~~~~~~~~~~~~ 207 (355)
T TIGR00896 171 WIPQVRR----RVA-------------------------------A--NQTTTRLTPVRIWR------SPLAWQVTVFFG 207 (355)
T ss_pred Hhhhhcc----ccC-------------------------------C--CCCCCCCCCchhhc------CHhHHHHHHHHH
Confidence 3444321 000 0 00000001122222 222332222222
Q ss_pred hhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHHHHHHHHHH
Q 010273 302 QQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVG-RKPLLYVSTIGMTICLLSLSLSLTF 380 (514)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~r~~~~~~~~~~~~~~~~~~~~~~~ 380 (514)
.....+.....|.|.++++.+. +....+.......++.++++++.|++.||++ ||+.+..+..+..++...+......
T Consensus 208 ~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH 286 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344556688999988654 4555666677788999999999999999995 5555556655555555444332211
Q ss_pred hcCcchhhHHHHHHHHHHHhhhccccccccceeeeec-cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010273 381 LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEI-FPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT 453 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 453 (514)
. .... ....+++.....|...+...+. .+++.++...++.+..++++..++|.+.|.+.|..|
T Consensus 287 ------~-~~~~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 ------G-LWAW---ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ------H-HHHH---HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1111 1122233333334444444433 345677899999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=246.16 Aligned_cols=414 Identities=14% Similarity=0.110 Sum_probs=287.2
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAI 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 119 (514)
..-+-|.+.+..++......-....++...+.++++++-+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44455666666666665555556666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCC
Q 010273 120 VFQAGAAIMTLAPSFAVLIIGR-LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPA 198 (514)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 198 (514)
+.+++.++.++++++|++++.. ++.|+|.|..+..+..++..|| +++|+.+.|+..++.++|.++-|.+.-. +.+
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~---l~~ 195 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKY---LLS 195 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHH---HHH
Confidence 9999999999999999988875 7789999999999999999877 5699999999999999998887777666 445
Q ss_pred CccchhhHhhchHHHHHHHHHHhhc-cCChhHHHHcCCHHHHHHHHHHhccC------------hhhHH----HHHHHHH
Q 010273 199 HINWRVMLGVGILPSVFIALALFVI-PESPRWLVMQGRIDEARLVLSKTNES------------VKEVE----ERLAEIQ 261 (514)
Q Consensus 199 ~~~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~ 261 (514)
..|||+.+++.+.+.+-.++....+ |.+++- +.+.++..+...+..+. +.... .......
T Consensus 196 ~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 196 KYGWRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLK 272 (509)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhh
Confidence 6899999998766666555554433 323220 00000000000000000 00000 0000000
Q ss_pred HHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHH
Q 010273 262 VAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKT 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+.. ++......+... ..+ ..+.++.+.++.+.+...+...++.....++|.+..+.+........+.+. .++..+
T Consensus 273 ~~~--~~~~~~~~~~~~-~~~-d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Si-igi~~i 347 (509)
T KOG2504|consen 273 RGP--DKWRNSPLQAFL-SML-DLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSI-IGVSDI 347 (509)
T ss_pred hCC--ccccccchhhhh-hhh-hHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH-HHHhhh
Confidence 000 000000000000 011 134566777888888888888888899999999999887776665555444 889999
Q ss_pred HHHHHHHHHHhhcCCch--hhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC
Q 010273 342 IFILIAIILIDKVGRKP--LLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP 419 (514)
Q Consensus 342 ~~~~~~g~l~d~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 419 (514)
+++++.|++.|+...++ ...++.+..+++......... ...++..+.+.++............+.|+.+
T Consensus 348 ~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~---------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g 418 (509)
T KOG2504|consen 348 IGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT---------YVGLIVFSILFGFCVGSFSSLTPVILVDLVG 418 (509)
T ss_pred hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999987433 344444444444433333222 2233333333334333333444457889999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhh
Q 010273 420 LRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 420 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 474 (514)
.++-..+.|+...+..++..++|++.|.+.|..+ |...|...+++.+++..+.+.
T Consensus 419 ~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 419 LEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred hhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 888888888888777766443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=238.33 Aligned_cols=367 Identities=14% Similarity=0.093 Sum_probs=221.2
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---hhh----
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT---LAP---- 132 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~---- 132 (514)
......+..| ++.+++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+.+++..... .++
T Consensus 25 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (420)
T PRK09528 25 IWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY 104 (420)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 56777999999999999999999999999999999999999999887776665543221 111
Q ss_pred -hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 133 -SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 133 -~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
.....++.+++.|.+.....+....+..+ . .+++++.++......++|..+++++++.+.+ .+|++.|++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~ 178 (420)
T PRK09528 105 NILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSG 178 (420)
T ss_pred HHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHH
Confidence 11112333444444333333333333222 2 3466788899999999999999999998543 489999999877
Q ss_pred HHHHHHHHHhhcc-CChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALALFVIP-ESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
..++..+..++++ |+++....+ ++ + . + ++++.......+.+++++.+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------~---~---~-~~~~~~~~~~~~~l~~~~~~-~ 227 (420)
T PRK09528 179 SALILLVLLFFAKPDAPSTAKVA---NA--------------------L---G---A-NASAVSLKDALALLKLPKFW-F 227 (420)
T ss_pred HHHHHHHHHhcccccccchhhhc---cc--------------------h---h---c-ccccccHHHHHHHccCCCeE-e
Confidence 7766665555443 333200000 00 0 0 0 00001111223334322211 1
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAG---IKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 367 (514)
..+....... .+.....+.|.++.+.. ..+....+.......+...++.++.|++.||+++|+.+..+.++.
T Consensus 228 l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~ 302 (420)
T PRK09528 228 LVLYVIGVAC-----FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIM 302 (420)
T ss_pred ehHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 1111111111 11112223455444321 223334455556567788899999999999999999888777776
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH-HHHHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL-GAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~ 446 (514)
.++..++.+... . +.. .......+.......+....+..|.+|++.+++..+. .++...+|.++++.+.|
T Consensus 303 ~~~~~l~~~~~~-----~---~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G 373 (420)
T PRK09528 303 AVRIIGSGFATG-----P---LEV-SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAG 373 (420)
T ss_pred HHHHHHHHhccc-----H---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHH
Confidence 666555543221 1 111 1111111222111223344667788899988888766 57788999999999999
Q ss_pred HHHhhhhcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 447 SVSHAITVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 447 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
.+.|..|++..|...+++.++..++.....++
T Consensus 374 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 374 NLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988988888877776665555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=227.49 Aligned_cols=350 Identities=13% Similarity=0.051 Sum_probs=231.7
Q ss_pred hhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 60 YDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRK----WTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
...+.+.|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 95 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFW 95 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHH
Confidence 3567888899988899999999999999999999999999999999999983 3333322222 223344468899
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
.+++.|++.|++.+...|...+++.++ .++|+++++......++|.++||++++.+ .++.|||..|++.++..++
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l---~~~~g~~~~f~~~~~~~~~ 170 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL---VSWFGEQAILWILTAGVAS 170 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH---HHHcChhHHHHHHHHHHHH
Confidence 999999999999998999888888876 45788999999999999999999999994 4567999999887665554
Q ss_pred HHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHH
Q 010273 216 IALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITG 295 (514)
Q Consensus 216 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (514)
..+..++.||.++ +++. + ++.++...++++.+++ +.++.
T Consensus 171 ~~~~~~~~~~~~~----~~~~------------------------------~-~~~~~~~~~~~~i~~~------~~~~~ 209 (382)
T PRK11128 171 MLLGQLLRPTIMP----QGES------------------------------R-QQESAGWPAWKALLKE------PTVWR 209 (382)
T ss_pred HHHHHHccCCCCC----cccc------------------------------c-cccccccchHHHHHcC------hhHHH
Confidence 4444444554321 0000 0 0000011234455542 22222
Q ss_pred HHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 010273 296 CGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLS 375 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 375 (514)
.....+...........+.|.|+++.+.+. ...+.......+..++..++.+++.||+++|+.+..+.++..++...+.
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 210 FLLCVSLLQGSHAAYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223344456677887766554 4455555567788888889999999999999998887777666655443
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhc
Q 010273 376 LSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA-VGSRVSSGAIAMSFLSVSHAITV 454 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~g~ 454 (514)
.... . +......+ +.++......+....+..+. +++++++..++.+ ....+|..++|.+.|.+.|..|+
T Consensus 289 ~~~~------~--~~~~~~~~-l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 289 STTA------L--PWLIVIQI-LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred hhhh------H--HHHHHHHH-HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3221 1 22222222 12222112234444555665 5666788888876 44566778999999999999886
Q ss_pred CcEehhhHHHHHHHH
Q 010273 455 GGTFFVFSLISALSV 469 (514)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (514)
..++..+++.+++.
T Consensus 359 -~~~~~~~~~~~~~~ 372 (382)
T PRK11128 359 -GVFWVMALVALPAL 372 (382)
T ss_pred -HHHHHHHHHHHHHH
Confidence 45555555544443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=229.13 Aligned_cols=397 Identities=13% Similarity=0.050 Sum_probs=236.0
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLAPSFAV-LIIGRL 142 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~ 142 (514)
......++.+++|.+.++.+++.+.+.....+..+++|+++|| +|||++++.+.++++++.++++++++... ++++|+
T Consensus 34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~ 113 (489)
T PRK10207 34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 3445567889999999999999999998999999999999999 99999999999999999999999876554 558999
Q ss_pred HHhccccccccchhhhhhhccccc--cccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHH
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSI--ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALAL 220 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~ 220 (514)
++|+|.|...|...+++.|++|++ +|++++++++.+.++|..+||.+++++ .++.|||+.|++.++..++.++.+
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l---~~~~gw~~~F~i~~i~~~~~~~~~ 190 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI---ADKFGYSVTYNLCGAGLIIALLVY 190 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH---HHhhChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 457899999999999999999999994 456799999999655444333333
Q ss_pred hhccCChhHH---HHcCCHHHHHHHH------------HHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 221 FVIPESPRWL---VMQGRIDEARLVL------------SKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 221 ~~~~e~~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
.+.++..+-. ..+.+.|.....+ ....+................ ...-+.+..+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~f~~~~~~~~ 261 (489)
T PRK10207 191 FACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVV---------TIIFFREAFKLD 261 (489)
T ss_pred HHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHHHHHhcCC
Confidence 3333211100 0000111111100 000000000000000000000 000000001111
Q ss_pred HHHHHHHHHHHHH--HHHhhhccceeeccchHHHhhh-cCC----CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 010273 286 PAVRRMLITGCGI--QCFQQITGIDATVYYSPTIFKG-AGI----KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKP 358 (514)
Q Consensus 286 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 358 (514)
+..|++.+..+.+ .....+..+....+..+.+.++ ..+ ..... ........+..++..++.+++.||+++|+
T Consensus 262 ~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~-~~~~~~n~~~iii~~pl~~~l~~rl~~r~ 340 (489)
T PRK10207 262 KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP-VSFQALNPFWVVVASPILAGIYTHLGSKG 340 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH-HHHHhHhHHHHHHHHHHHHHHHHHHhhCC
Confidence 2223232222111 1222222233333455555553 221 11111 22222234556677888899999999886
Q ss_pred h-------hhhhhHHHHHHHHHHHHHHH-Hh-cCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH
Q 010273 359 L-------LYVSTIGMTICLLSLSLSLT-FL-GNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL 429 (514)
Q Consensus 359 ~-------~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 429 (514)
. +.++.++.++++..+..... .. .+.....+. ++....+.+.......|....++.+..|++.++.++|+
T Consensus 341 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~ 419 (489)
T PRK10207 341 KDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWF-IVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGM 419 (489)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHH
Confidence 3 66666666666544322111 11 111111222 22233333444444556777888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 430 GAVGSRVSSGAIAMSFLSVSH----------AITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 430 ~~~~~~~g~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
.+...++|+.++..+...... ...+.+.|...++..++..++.+..
T Consensus 420 ~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 420 WFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877754421 1123345566666555555554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=227.62 Aligned_cols=368 Identities=11% Similarity=-0.008 Sum_probs=236.4
Q ss_pred hhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hhHH-HHHHHHHHHHHHHHHH
Q 010273 55 SVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-----GRKW-TIALAAIVFQAGAAIM 128 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~~~ 128 (514)
++..++........+|..-++.|+|.+++|++..+... .+..+++|+++||+ |||| +++.+.++.+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 45556677888889998888889999999999777665 59999999999999 8765 7888899998888888
Q ss_pred Hhh---hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 129 TLA---PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 129 ~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
++. ++++.+++..++.++..+...+...+++.|++|+++|+++.++...+.++|.++++.++..+.+ ...|||..
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~--~~~gw~~~ 163 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD--RVLGWGNT 163 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh--cccCHHHH
Confidence 877 4578888888888888888899999999999999999999999999999999999888877432 12599999
Q ss_pred HhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 206 LGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
|++.++..++..+..+++||+++. +++.+ +.+++.+..+++.++++
T Consensus 164 f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~-------------------------------~~~~~~~~~~~~l~~~~ 209 (402)
T PRK11902 164 YLLMAGLMLAGALTTLWAPEPEVP---ARPPR-------------------------------SLGEAVVGPLRDFFSRR 209 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc---ccccc-------------------------------hhHHHHHHHHHHHHhCc
Confidence 999777666655556667776531 00000 00001122344444422
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCchhhhhhh
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAV-GFTKTIFILIAIILIDKVGRKPLLYVST 364 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~r~~~~~~~ 364 (514)
. ++.......+... ... ....+.+.++.+..+.+....+...... .++.+++.++++++.||+++|+.+..+.
T Consensus 210 ~-~~~~l~~~~l~~~-~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~ 283 (402)
T PRK11902 210 G-AWALLLLIVLYKL-GDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFG 283 (402)
T ss_pred C-HHHHHHHHHHHHh-HHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 1111111111111 000 1111233334333333444555554333 3457889999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHHHH-HHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 365 IGMTICLLSLSLSLTFLGNGQLGIALAIL-SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAM 443 (514)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 443 (514)
.+..+..+.+....... + +........ ...+..+.......+....++.+.+|.+. .++.+....++..+++.
T Consensus 284 ~~~~l~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 357 (402)
T PRK11902 284 VLQAVSNLGYWVLAVTP-K-HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGP 357 (402)
T ss_pred HHHHHHHHHHHHHHhcC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHH
Confidence 55554443332221111 1 111111111 11112222222233455566777777554 45555556677776677
Q ss_pred HHHHHHhhhhcCcEehhhHHHHHHHHHHh
Q 010273 444 SFLSVSHAITVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 444 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 472 (514)
+.|.+.|..|++..|.+.+++++++.++.
T Consensus 358 ~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 358 TSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 89999999999888888877777765554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=261.44 Aligned_cols=373 Identities=12% Similarity=-0.042 Sum_probs=242.8
Q ss_pred HHhhhhhhhhhhhcchhHh-hhhhccccCh-hHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHH---HHHHHHHHHH
Q 010273 52 SLNSVLLGYDVGVMSGAII-FIKEDLKITE-VQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIAL---AAIVFQAGAA 126 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~ 126 (514)
+++.+.+++....+..... .+..+.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333 4555555543 457888999999999999999999999999997543 3333333333
Q ss_pred HHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 127 IMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
.+...+++++++++|+++|++.+...|+..+++.+++++++|++++++.+++.++|.++||++++++ ....+|++.|
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l---~~~~~~~~~~ 177 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA---TISGNFVILV 177 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH---HhccccHHHH
Confidence 3444589999999999999999999999999999999999999999999999999999999999995 4467999999
Q ss_pred hhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCH
Q 010273 207 GVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSP 286 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
+..++..++.+++.+++|+++.- +.+.+. ...........++...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~~~~~~--- 223 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKTGNA---APDLKI----------------------------DRNIIRSTITLLKYAKA--- 223 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC---CCCCee----------------------------ccchHHHHHHHHHHHhc---
Confidence 66666666666666777765420 000000 00000011122333333
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHH
Q 010273 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIG 366 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~ 366 (514)
++.++...+..+..+........+.|.|+++..+.+....+++....+++.+++.++.|++.++..+++.+..+.++
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 224 ---DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence 22233333333333333334556889998876666666777778888899999999999999887776665555554
Q ss_pred HHHHHHHHHHHHH--------------HhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHH
Q 010273 367 MTICLLSLSLSLT--------------FLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAV 432 (514)
Q Consensus 367 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (514)
..++.+.+.+... +..... .+... ...++.+++.....+...+++.+..|++.+|+++|+.++
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~ 377 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH--GWRIL-IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNV 377 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccc--cHHHH-HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHH
Confidence 4444333322100 000001 12112 222222333333444566888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhcCcEehhhHHHHHH
Q 010273 433 GSRVSSGAIAMSFLSVSHA-ITVGGTFFVFSLISAL 467 (514)
Q Consensus 433 ~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 467 (514)
+..++..+++.+.+.+.+. .++...+++.+++.++
T Consensus 378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 378 LNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999988743 3444444444443333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=225.31 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=148.4
Q ss_pred hhhhcchhHhhhhhccccChhH-HHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010273 61 DVGVMSGAIIFIKEDLKITEVQ-QEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLII 139 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (514)
-+...+.+.|++.+|+|+|+++ .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh---chHHHHHH
Q 010273 140 GRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV---GILPSVFI 216 (514)
Q Consensus 140 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~---~~~~~~~~ 216 (514)
.|++.|+++|+.+ +...++..|+|+++|+++.++..++..+|.++++++++.+. ..|||+.+.+ ......+.
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999998833 3589976554 33444455
Q ss_pred HHHHhhccCChhHHH
Q 010273 217 ALALFVIPESPRWLV 231 (514)
Q Consensus 217 ~~~~~~~~e~~~~~~ 231 (514)
+++.+++|..++-+.
T Consensus 196 ~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 196 VFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHhCCCCchhhh
Confidence 556788886665443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=225.21 Aligned_cols=367 Identities=15% Similarity=0.108 Sum_probs=232.1
Q ss_pred hhhhhhhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH---Hhh
Q 010273 56 VLLGYDVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM---TLA 131 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~ 131 (514)
++.......+.|.+| ++.+++|.++.+.|++.+++.+++.+++++.|+++||+|||+.++.+....+++.... .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 91 (396)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFG 91 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445566666776 4667899999999999999999999999999999999999999998877766544332 111
Q ss_pred -----hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 132 -----PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 132 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
+.+..+++.|++.|++.+...+....+..+.. ++++..++......++|.++|+.+++.+.+ .+||+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f 165 (396)
T TIGR00882 92 PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVF 165 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHH
Confidence 22345567789999988888888877776643 344567788888889999999999987432 4999999
Q ss_pred hhchHHHHHHHHHHhh-ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 207 GVGILPSVFIALALFV-IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
++.++..++..+..+. .||+|+. ++.+ + ..+ . ++++++..+..+.++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------------~---~~~-~-~~~~~~~~~~~~~l~~~ 215 (396)
T TIGR00882 166 WLGSGFALILMLLLMFAKPKAPSS-------ATVA------------------N---ALG-A-NASAFSLKLALELFRQR 215 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchh-------hhhh------------------c---ccc-c-ccCCCCHHHHHHHHcCC
Confidence 9987777766555444 4444320 0000 0 000 0 00111112344555533
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh
Q 010273 286 PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAG---IKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV 362 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~ 362 (514)
+.+. .....+.....+.....+.+.|+++.. ..+....+.......+...++.+..+++.||+++|+.+.+
T Consensus 216 ~~~~------~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~ 289 (396)
T TIGR00882 216 KFWM------FVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLI 289 (396)
T ss_pred cHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 2221 111111111112223234566655432 2223344555555667788888999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH-HHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL-GAVGSRVSSGAI 441 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~ 441 (514)
+.++..+...+...... . +...... ...+............+..+..|++.++++.+. .+....+|+.++
T Consensus 290 ~~~l~~l~~~~~~~~~~-----~---~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 290 AGTIMSVRIIGSSFATT-----A---LEVVILK-MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred HHHHHHHHHHHHHhcCC-----h---HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHH
Confidence 77766665544332111 1 1111111 111111111111222345566677777777766 578899999999
Q ss_pred HHHHHHHHhhhhcCcEehhhHHHHHHHHHHhh
Q 010273 442 AMSFLSVSHAITVGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 442 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 473 (514)
+.+.|.+.|..|++..|.+.+++.++..+...
T Consensus 361 ~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 361 STLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888777666543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=208.82 Aligned_cols=366 Identities=14% Similarity=0.098 Sum_probs=273.8
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
..+....++.++......+.+|.+++.|++|..|.+++...++.+|.+.+++.|++.+|+|+|+.++.|+.++++++.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444556777788889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H---hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC---------
Q 010273 129 T---LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL--------- 196 (514)
Q Consensus 129 ~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~--------- 196 (514)
. -..+|..++++-++.|.|.+.....++.++....++++..+.+++.+..+++|.++||++++.+..-
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 4 5578999999999999999999999999999999998899999999999999999999999876420
Q ss_pred ------C-CCccchhhHhhchHHHHHHHHHHhh--ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccc
Q 010273 197 ------P-AHINWRVMLGVGILPSVFIALALFV--IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD 267 (514)
Q Consensus 197 ------~-~~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (514)
. ....||++|...+...+++.+.... +|+.+. .+
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-------------------------------------~~ 218 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-------------------------------------AA 218 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-------------------------------------cc
Confidence 0 0124788888766555555544333 344331 00
Q ss_pred hhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010273 268 NAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIA 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
.+..+..+....+.+ +++-++...+..++..........|++.|+.+..+.+.+++.........+.++|++++
T Consensus 219 ~~~~~~~~~~~~~l~------~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig 292 (422)
T COG0738 219 PSLGASGSAGLSSLF------QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIG 292 (422)
T ss_pred ccccccccchHHHHH------hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111233333 33444444555566666667777899999999766677777777888999999999999
Q ss_pred HHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 348 IILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 348 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
.++..|+...|.+....++..+.++...+... .+.+......+.+....+|..++...+..| ++. ...
T Consensus 293 ~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g----------~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~ 360 (422)
T COG0738 293 SALMSRIKPEKYLAFYALIAILLLLAVALIGG----------VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVG 360 (422)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC----------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc-ccc
Confidence 99999999888887766555554444443332 122233334456666777888898888888 443 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHH
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSV 469 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 469 (514)
|.......+|+++.|.+.|++.|..|....+.....+|.+..
T Consensus 361 s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 361 SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred ceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 444566778999999999999999987766665555555554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=254.63 Aligned_cols=346 Identities=13% Similarity=-0.028 Sum_probs=229.5
Q ss_pred hhhhcchhHhhhhhccccCh--hHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---hhhhHH
Q 010273 61 DVGVMSGAIIFIKEDLKITE--VQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT---LAPSFA 135 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~ 135 (514)
+......+.+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1146)
T PRK08633 25 DLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFW 104 (1146)
T ss_pred HHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 33344455566666676654 4579999999999999999999999999999999999877666655544 457899
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC------CCccchhhHhhc
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP------AHINWRVMLGVG 209 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~------~~~~Wr~~f~~~ 209 (514)
.++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++.... +..+|++.+.+.
T Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV 184 (1146)
T ss_pred HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864320 012344544443
Q ss_pred hH-HHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 IL-PSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
.+ ..++.+++.+.+||+|+....+. ++ ............++.+++.+ .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~l~~~~-~- 233 (1146)
T PRK08633 185 LLAVAVLGLIFAYRLPKVPAAAPEVF--DK---------------------------KKYLFPKLLWRNLKLLRSDR-V- 233 (1146)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCcccc--cc---------------------------cccccHHHHHHHHHHHhcCc-H-
Confidence 33 33334444566787764210000 00 00000011122334444322 1
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNN-ELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 367 (514)
++...+..+..+........+.|.++.+..+.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++.
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 309 (1146)
T PRK08633 234 ----LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGL 309 (1146)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHH
Confidence 22111221222222223445667777665444445 6677777788999999999999999999888877776666
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLS 447 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 447 (514)
+++.+++..... ....+...++.+++.....+...+++.+..|++.||+++|+.+++.+++..+++.+.+.
T Consensus 310 ~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 310 ALSLFLLPTAPS---------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred HHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 665555543321 11122222222333333344556778888999999999999999999988777766665
Q ss_pred HHh
Q 010273 448 VSH 450 (514)
Q Consensus 448 ~~~ 450 (514)
+..
T Consensus 381 l~~ 383 (1146)
T PRK08633 381 FSG 383 (1146)
T ss_pred HHH
Confidence 543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=217.67 Aligned_cols=349 Identities=13% Similarity=0.062 Sum_probs=251.5
Q ss_pred hccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc
Q 010273 74 EDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVM 153 (514)
Q Consensus 74 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 153 (514)
++++-+++++|++.+.+.+...+.+++.|.+.||+|+|..+++|++++.+.++++++.++|+++++.|.+||+|.++...
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccccc-cccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCChhHHHH
Q 010273 154 IAPLYIAEISPSI-ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVM 232 (514)
Q Consensus 154 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 232 (514)
++.++++|.||++ +|++++|+.-.+.++|..+||++|++ +.+..|.+.+|++.+++.++-..+.+++-|+.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGi---lYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---- 251 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGI---LYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---- 251 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccc---hHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----
Confidence 9999999999976 58999999999999999999999999 445679999999999888888877666544321
Q ss_pred cCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeecc
Q 010273 233 QGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVY 312 (514)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (514)
..++...+..+++++++ .+.++.................-
T Consensus 252 ----------------------------------~~~~~~~~~~~~~~Ll~------dP~I~~~agai~~~n~~lafLeP 291 (464)
T KOG3764|consen 252 ----------------------------------MDPDSTEQGTPMWSLLM------DPYILLIAGAITFSNSSLAFLEP 291 (464)
T ss_pred ----------------------------------cCccccccCccHHHHHh------CchHhhhhcchhhccchHHHhCc
Confidence 01112223334444443 23333332222222222223333
Q ss_pred chHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh--hhhhhHHHHHHHHHHHHHHHHhcCcchhhHH
Q 010273 313 YSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPL--LYVSTIGMTICLLSLSLSLTFLGNGQLGIAL 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.++.+..+.-..+....++..++..+...++..+.|.+.||++..+- ...+.+....+.....+... ....+.
T Consensus 292 tlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~-----~~~L~v 366 (464)
T KOG3764|consen 292 TLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS-----IAQLWV 366 (464)
T ss_pred ccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh-----HHHHhh
Confidence 44554544444566677888888999999999999999999994332 22333333333333333322 111233
Q ss_pred HHHHHHHHHhhhccccccccceeeeeccChh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHH
Q 010273 391 AILSVCGNVAFFSVGIGPVCWVLSSEIFPLR---LRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 467 (514)
.........+.......|.. .+..|....+ ..|..+++......+|.++||.+.|.+.+..|+.|...+.+...++
T Consensus 367 p~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 33333333333333444544 3333333333 5688999999999999999999999999999999988888888877
Q ss_pred HHHHhhhc
Q 010273 468 SVAFVYKC 475 (514)
Q Consensus 468 ~~~~~~~~ 475 (514)
...++..+
T Consensus 446 yapvl~ll 453 (464)
T KOG3764|consen 446 YAPVLLLL 453 (464)
T ss_pred HHHHHHHH
Confidence 77665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=221.80 Aligned_cols=413 Identities=13% Similarity=0.045 Sum_probs=244.6
Q ss_pred hhhhhhhhhcchhHh-hhhhc--cccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhh
Q 010273 56 VLLGYDVGVMSGAII-FIKED--LKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLA 131 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~-~i~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~ 131 (514)
+...+......+.+| ++.++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555555 45666 99999999999999999999999999999999 899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccccccchhhhhhhcccccc---ccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 132 PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIA---RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 132 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
++++.+++.|++.|++.|...+...++++|++|+++ |++++++++.+.++|.++||++++.+ .++.+||+.|++
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l---~~~~g~~~~f~~ 176 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI---AENYGYHVGFNL 176 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH---HHhcChHHHHHH
Confidence 999999999999999999999999999999998754 88899999999999999999999984 446799999999
Q ss_pred chHHHHHHHHHHhhcc----CChhHHHHcCCHHHHHHHH--H-----------H--hccChhhHHHHHHHHHHHhccchh
Q 010273 209 GILPSVFIALALFVIP----ESPRWLVMQGRIDEARLVL--S-----------K--TNESVKEVEERLAEIQVAAGSDNA 269 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~--~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
.++..++..+.+++.+ +.|+. ..+.+.++.+... . . ...+....................
T Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (475)
T TIGR00924 177 AAVGMVIGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFF 255 (475)
T ss_pred HHHHHHHHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 7765554444443333 22210 0000001000000 0 0 000000000000000000000000
Q ss_pred hhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCC----chHHHHHHHHHHHHHHHHHH
Q 010273 270 EKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKG----NNELLAATVAVGFTKTIFIL 345 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 345 (514)
+. ..+....+. ...+...+..+.......+..+.-.....+.+.++.-..+ ....+.......+..++..+
T Consensus 256 ~~-~~~~~~~~~----~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p 330 (475)
T TIGR00924 256 RL-AFKPRLDAV----ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP 330 (475)
T ss_pred HH-HHhccCCHH----HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence 00 000000000 0011111222222222222222233333454443321111 11123444445555555555
Q ss_pred HHHHHHhhcCC-----chhh--hhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeecc
Q 010273 346 IAIILIDKVGR-----KPLL--YVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIF 418 (514)
Q Consensus 346 ~~g~l~d~~~~-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (514)
+..++..|.+| +... .++.++.++++..+.+...............++....+.+..-....|..+++..+..
T Consensus 331 ~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a 410 (475)
T TIGR00924 331 VLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIA 410 (475)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 54443334333 2322 5566666666666554322211111111222333333444555556688889999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccc
Q 010273 419 PLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVP 477 (514)
Q Consensus 419 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (514)
|++.||+++|+......+|..+++.+.....+..++...+...++++++..++.++..|
T Consensus 411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887766666666676666666666665544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=221.65 Aligned_cols=331 Identities=11% Similarity=0.013 Sum_probs=219.4
Q ss_pred hhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hhHHH-HHHHHHHHHHHHHHHHhh---h
Q 010273 62 VGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-----GRKWT-IALAAIVFQAGAAIMTLA---P 132 (514)
Q Consensus 62 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~ 132 (514)
....++..|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3456778999999999999999999755 555555 99999999998 88886 567788888887777777 4
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc--------chh
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN--------WRV 204 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~--------Wr~ 204 (514)
+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +..+ ||.
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA---SPEFANTGLITLWGY 158 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh---hhcccccccccccHH
Confidence 66677788888898888888999999999999999999999999999999999999988743 3345 999
Q ss_pred hHhhchHHHHHHHHHHhh-ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhC
Q 010273 205 MLGVGILPSVFIALALFV-IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIIN 283 (514)
Q Consensus 205 ~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.|++.++..++..+..++ .||+++. .+ ++ ++++++.+..++++++
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~----~~-~~-----------------------------~~~~~~~~~~~~~~~~ 204 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQED----AS-VP-----------------------------KPLTQAVLKPIREFFQ 204 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc----cc-cc-----------------------------hhHHHHHHHHHHHHHH
Confidence 999988777766655443 5664320 00 00 0000011122333333
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCchhhhh
Q 010273 284 PSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVG-FTKTIFILIAIILIDKVGRKPLLYV 362 (514)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~~~~ 362 (514)
++... .++...+..+...........+.|.++++.+.+ ....+......+ +..+++.+++|++.||+|+|+.+..
T Consensus 205 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 280 (356)
T TIGR00901 205 RKNMI---QALLLLLLIVLYKLGDSAATVLTTLFLLDMGFS-KEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLL 280 (356)
T ss_pred hcCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 11100 122222222222333445566788888885544 444444443333 5678999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHHHhcCc--chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSLSLTFLGNG--QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSR 435 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 435 (514)
+.++..++..++.+......+. .......+.......++......+...++..|.+|+++||+.+|+.+...+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 281 FGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 7777666555444332111000 000011122222222333334456777899999999999999999887654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=236.65 Aligned_cols=306 Identities=12% Similarity=0.129 Sum_probs=216.4
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
+..++..+...+..+..+..++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33444556666678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh---------------------------------------------------hHHHHHHHHHHHhccccccccchhh
Q 010273 129 TLAP---------------------------------------------------SFAVLIIGRLLAGVGIGFGVMIAPL 157 (514)
Q Consensus 129 ~~~~---------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~ 157 (514)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 2557789999999999999999999
Q ss_pred hhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC-------------------ccchhhHhhchHHHHHHHH
Q 010273 158 YIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH-------------------INWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~-------------------~~Wr~~f~~~~~~~~~~~~ 218 (514)
++.|++|+++|+++++++..+..+|.++|+++++.+.+.... ..||..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886542110 1277778887777777666
Q ss_pred HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHH
Q 010273 219 ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGI 298 (514)
Q Consensus 219 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (514)
.++++|++.+-...+.+.++.++.. ..+... + .........++....++. .++++.++...+
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~--~~~~~~-------~---~~~~~~~~~~~~~~~~~~------Ll~n~~f~~~~l 337 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEK--LEKSED-------K---SRKKNSDITKDFPKIIKR------LLCNPIYMLVIL 337 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhc--cccccc-------c---cchhhhhhHHHHHHHHHH------HHcCcHHHHHHH
Confidence 6667776432000000000000000 000000 0 000000000111122333 344556666666
Q ss_pred HHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGF-TKTIFILIAIILIDKVGR--KPLLYVSTIGMTICLL 372 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--r~~~~~~~~~~~~~~~ 372 (514)
..+......+.+..|+|.|+++..+.+...++.+.....+ +.+++.+++|+++||++. |+.+..+.+...++.+
T Consensus 338 ~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 338 AQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 6666666677788899999997666666666666655554 567899999999999984 4555555555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=222.51 Aligned_cols=368 Identities=15% Similarity=0.099 Sum_probs=263.1
Q ss_pred hhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---
Q 010273 55 SVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--- 131 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--- 131 (514)
..+..+...+.....+.+..++.-|+...+++..+..+...+.++++|.++||++||++++.+-++.++..++.++.
T Consensus 19 ~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~ 98 (524)
T PF05977_consen 19 QLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF 98 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456666677777777888899999999999999999999999999999999999999998887766555443
Q ss_pred --hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 132 --PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 132 --~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
.+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+. ...|-.+.|++.
T Consensus 99 ~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv---a~~G~~~~f~in 175 (524)
T PF05977_consen 99 GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV---AFFGAAAAFLIN 175 (524)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999843 345778888887
Q ss_pred hHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHH
Q 010273 210 ILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVR 289 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
++..++.+......+..++ .+... .+.-.+.-+..++-..+ .+.++
T Consensus 176 alsfl~~i~~l~~~~~~~~---~~~~~------------------------------~e~~~~~l~~G~ryv~~-~~~l~ 221 (524)
T PF05977_consen 176 ALSFLISILALLRWKPPPP---PSSLP------------------------------RERFFSALREGLRYVRS-SPPLR 221 (524)
T ss_pred HHHHHHHHHHHHHcccccc---ccccc------------------------------hhhhhhhHHHHHHHHhc-chHHH
Confidence 7766665544444432221 00000 00000111222222222 23333
Q ss_pred HHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 010273 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTI 369 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 369 (514)
...+...... .........+|.+.++..+.+....+++....++++++|.++.+++.+|+++++.+..+.++.++
T Consensus 222 ~~l~~~~~~~-----l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 222 SVLLRSFLFN-----LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFAL 296 (524)
T ss_pred HHHHHHHHHH-----HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHH
Confidence 2222211111 11122334578888776666777788888889999999999999999999988888877777777
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 370 CLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 449 (514)
+.+.+.+.... +.. ....+..++..........+...+..|++.||+++++..+....+..+|..+.|.+.
T Consensus 297 ~~~~lal~~~~--------~~~-~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 297 ALLLLALSPSF--------WLA-LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHhcchHH--------HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554432 222 222223333333334455577888899999999999999999999999999999999
Q ss_pred hhhhcCcEehhhHHHHHHHHHHhh
Q 010273 450 HAITVGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 450 ~~~g~~~~~~~~~~~~~~~~~~~~ 473 (514)
+..|....+.+.+++.+++.++..
T Consensus 368 ~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 368 DHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999988777766665555555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=226.54 Aligned_cols=339 Identities=15% Similarity=0.109 Sum_probs=223.4
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV----LGR-KWTIALAAIVFQAGAAIMTLAPS------FAV 136 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~ 136 (514)
..+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+...++++.+++.+.++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 5567888999999999999999999999999999999998 677 55778888888888888877654 456
Q ss_pred HHHHHHHHhccccccccchhhhhhhcc-ccccccccchhhHHHHHHHHHHHHHHhhhccc-C---CCCccchhhHhhchH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEIS-PSIARGSLTSFPEIFINLGILLGYISNYAFSR-L---PAHINWRVMLGVGIL 211 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~-~---~~~~~Wr~~f~~~~~ 211 (514)
+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+.. + .+..+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 677888889988887777788888887 56899999999888888887776555443321 1 134689999998777
Q ss_pred HHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
+.++..+. ++..+|.++. .+ + +++++.+.+..++.++++++
T Consensus 182 l~~~~~~~~~~~~~e~~~~----~~-~-----------------------------~~~~~~~~~~~~~~l~~~~~---- 223 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE----IP-K-----------------------------NIEKKLSLKQIFKALFKNDQ---- 223 (437)
T ss_pred HHHHHHHHHHcCCEecCCC----CC-c-----------------------------ccccCCCHHHHHHHHhCCHH----
Confidence 76665554 5556665420 00 0 00001112233444444222
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
++......+...........+.+.+.+...+ +....+.......++.+++.++.++++||+|+|+.+..+.++..++
T Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 224 --LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLG 300 (437)
T ss_pred --HHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2222222222222222222334444443333 2333444455567889999999999999999999988887776666
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-------hhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-------LRLRAQASALGAVGSRVSSGAIAM 443 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 443 (514)
.+.+.+.. + .. +.. .......++......+..+++..|..+ ++.+|.+.|+.+....+|..+++.
T Consensus 301 ~~~~~~~~----~-~~--~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~ 372 (437)
T TIGR00792 301 YLIFFFAG----S-NL--PLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF 372 (437)
T ss_pred HHHHHHcc----h-hH--HHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 55543321 1 11 111 111122222222333455566666644 456799999999999999999999
Q ss_pred HHHHHHhhhhcC
Q 010273 444 SFLSVSHAITVG 455 (514)
Q Consensus 444 ~~~~~~~~~g~~ 455 (514)
+.|.+.+..|+.
T Consensus 373 i~g~ll~~~G~~ 384 (437)
T TIGR00792 373 LVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHcCCC
Confidence 999999887764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=217.35 Aligned_cols=420 Identities=15% Similarity=0.074 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH
Q 010273 43 YVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ 122 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 122 (514)
++|.+++.........+ ....++...+.+++++|+|..+++++.++. ..+..++++.|++.||+|+|+++.++.++++
T Consensus 25 ~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34444444444444333 234556778899999999999999998874 4556788899999999999999999999999
Q ss_pred HHHHHHHhh------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHH-HHHHhhhccc
Q 010273 123 AGAAIMTLA------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILL-GYISNYAFSR 195 (514)
Q Consensus 123 ~~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~~~~ 195 (514)
++.++++++ ++++.+.+.|++.|+|.+...+.....+.+|+| ++||+++|+...+.++|.++ +++..+++.
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~- 180 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS- 180 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999997 689999999999999999999999999999996 68999999999999999975 555555533
Q ss_pred CCCCccchhhHhhchHHHHHHHHH-Hhhc--cCChhHHHHcCCHHHHHHHHHHhc-------------------------
Q 010273 196 LPAHINWRVMLGVGILPSVFIALA-LFVI--PESPRWLVMQGRIDEARLVLSKTN------------------------- 247 (514)
Q Consensus 196 ~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~--~e~~~~~~~~~~~~~~~~~~~~~~------------------------- 247 (514)
.+|+..|++.++..++..++ +.++ |+.+++...+++.++.++..++..
T Consensus 181 ----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~ 256 (591)
T PTZ00207 181 ----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILI 256 (591)
T ss_pred ----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHH
Confidence 37888888866666655444 4444 444444433332222222211000
Q ss_pred -------------cChhhHHHHHHH--H------H---------H-H--h-ccch--h---h-----hhhHHHHHHHhh-
Q 010273 248 -------------ESVKEVEERLAE--I------Q---------V-A--A-GSDN--A---E-----KNEEKAVWREII- 282 (514)
Q Consensus 248 -------------~~~~~~~~~~~~--~------~---------~-~--~-~~~~--~---~-----~~~~~~~~~~~~- 282 (514)
+........... + . + . . +.+. . + ..++........
T Consensus 257 ~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (591)
T PTZ00207 257 VFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVD 336 (591)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccccc
Confidence 000000000000 0 0 0 0 0 0000 0 0 000000000000
Q ss_pred --------CCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhc-CCCCchH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 283 --------NPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA-GIKGNNE-LLAATVAVGFTKTIFILIAIILID 352 (514)
Q Consensus 283 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d 352 (514)
+-.+.+++.-+|.+....++...........+.++.+.. |...... ...+....++++.+|++..|+++.
T Consensus 337 ~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~ 416 (591)
T PTZ00207 337 YIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI 416 (591)
T ss_pred CCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH
Confidence 112345677788888888888888888888899999888 5423331 221445578999999999999883
Q ss_pred hcCCch----h-hhhhhH---HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhh
Q 010273 353 KVGRKP----L-LYVSTI---GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRA 424 (514)
Q Consensus 353 ~~~~r~----~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 424 (514)
...+|+ . ..+... ++.++.+++.+.. + . ..+.....+.++......++....+.|+|. ++-|
T Consensus 417 ~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~----p-~----~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g 486 (591)
T PTZ00207 417 WSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL----P-K----AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPA 486 (591)
T ss_pred HHHhhccccccchhHHHHHHHHHHHHHHHHHHHC----C-c----cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchH
Confidence 333222 1 111111 1222222222211 1 0 112222222223333334566678899999 8888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-------------cCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 425 QASALGAVGSRVSSGAI-AMSFLSVSHAIT-------------VGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 425 ~~~g~~~~~~~~g~~~~-~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+-+-+.....-+|..+. -.++|.++|.-. ++.+|++++++++++.+....+..++|
T Consensus 487 ~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 487 KHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 88877777777777665 567788887432 345688888888888887655544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=203.14 Aligned_cols=362 Identities=14% Similarity=0.133 Sum_probs=207.4
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc
Q 010273 72 IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFG 151 (514)
Q Consensus 72 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 151 (514)
+.++.+.+..-.|.+.+.|.+...++++.+|.++||+|||+++++|++..++..++.+++.|+..++++|++.|+..| .
T Consensus 59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-n 137 (451)
T KOG2615|consen 59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-N 137 (451)
T ss_pred hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-c
Confidence 444444456678999999999999999999999999999999999999999999999999999777777999999988 6
Q ss_pred ccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-ch--hhHhhchHHHHH-HHHHHhhccCCh
Q 010273 152 VMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WR--VMLGVGILPSVF-IALALFVIPESP 227 (514)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr--~~f~~~~~~~~~-~~~~~~~~~e~~ 227 (514)
..+..++++|.+++|+|+++|+.+....++|.++||.+|+++..+.+..| +. .+-++..+.... .....+++||+-
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 67889999999999999999999999999999999999999775221112 11 111222222222 344567789984
Q ss_pred hHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHH-HHHHHHHHHhhhcc
Q 010273 228 RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML-ITGCGIQCFQQITG 306 (514)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 306 (514)
+ .+++.|+.....+.. ....+. ...+ ....-..+++.+...... ...+.+..+.....
T Consensus 218 ~---~rk~~~~~~~~~~~~--------~~~~~~---~~~~-------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l 276 (451)
T KOG2615|consen 218 P---LRKRNDEHSTLQEAA--------DDRLAL---LKFA-------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLEL 276 (451)
T ss_pred c---chhhcccccchhhhh--------hhhhhh---cchh-------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 2 111111111000000 000000 0000 000001111111111000 01111111111111
Q ss_pred ceeeccchHHHh-hhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-----hhhhhhHHHHHHHHHHHHHHHH
Q 010273 307 IDATVYYSPTIF-KGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKP-----LLYVSTIGMTICLLSLSLSLTF 380 (514)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~ 380 (514)
+....++.+.+. +..++++.++ +.+....++ .+.++.+.+..+..|-+ .+.....++.-...++....
T Consensus 277 ~s~~~~t~~~l~~~rfg~ss~~~-G~vl~~tGl---~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~-- 350 (451)
T KOG2615|consen 277 FSGLENTVLFLTHGRFGYSSMQQ-GKVLSTTGL---LMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR-- 350 (451)
T ss_pred HHHHHhhHHHhhcCccCCChhhh-eeeeehhhH---HHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--
Confidence 112222333332 3445555444 443333444 44445555555544433 12222111111111111111
Q ss_pred hcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCcEeh
Q 010273 381 LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA-ITVGGTFF 459 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~ 459 (514)
. ...+.....+-.+.+....+....+.....|++.||+++|+....+.++.++||.+.|.+... .+-+..+.
T Consensus 351 -----~--~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~ 423 (451)
T KOG2615|consen 351 -----T--PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYI 423 (451)
T ss_pred -----c--chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceee
Confidence 0 111222222222333334456667788889999999999999999999999999999877652 23344554
Q ss_pred hhHHHHHHH
Q 010273 460 VFSLISALS 468 (514)
Q Consensus 460 ~~~~~~~~~ 468 (514)
..+.+.+..
T Consensus 424 ~~~~L~~~~ 432 (451)
T KOG2615|consen 424 AWGALLLIP 432 (451)
T ss_pred ehHHHHHHH
Confidence 444444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=193.19 Aligned_cols=365 Identities=17% Similarity=0.126 Sum_probs=268.8
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
..+.+..+..--..+..+|.++++++|+|+|.+..|++.++..+..++.+++..+++.|+|.++.+..++++.+++.++-
T Consensus 15 ~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR 94 (395)
T COG2807 15 AGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIR 94 (395)
T ss_pred HHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333344445567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
... +.+.++.+-.+.|.+.+......+.++.+.||+ +-+..+++|....++|..+++.+...+... ..+||....+
T Consensus 95 ~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~--~~gW~~aL~~ 170 (395)
T COG2807 95 SLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQH--SGGWRGALGF 170 (395)
T ss_pred hcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHh--hccHHHHHHH
Confidence 887 788899999999999999999999999999975 779999999999999999998888774432 1489999988
Q ss_pred chHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 209 GILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
-++++++.++.|+.-. .|. + ....+.+.. +..+.+
T Consensus 171 WAl~allAl~~WlPq~--~r~-----~--------------------------------~~~~~~~~~------~~~~vw 205 (395)
T COG2807 171 WALLALLALLIWLPQA--LRE-----Q--------------------------------AASIATKLV------SVRKVW 205 (395)
T ss_pred HHHHHHHHHHHHhhhc--ccc-----c--------------------------------ccccccccc------cccccc
Confidence 8888887777664322 210 0 000000000 013356
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhhhhHHH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGR-KPLLYVSTIGM 367 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~~~ 367 (514)
|++..|.+.+++.++...++....|+|.++.+.|.+..+...+ .....+..++..+....+.+|... |+.......++
T Consensus 206 ~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~l-lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~ 284 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSL-LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM 284 (395)
T ss_pred cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 6777888888888888889999999999999999777655555 444789999999999999998654 55555555555
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeecc-ChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIF-PLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
.++.+.+.+.+.. .. +.. ....+....+.+|.....+.+.. .++..+.-.|+.+.++++-.+.+|.+.|
T Consensus 285 l~G~~G~~~~P~~----~~--~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G 354 (395)
T COG2807 285 LVGLVGLLLAPGQ----LP--ILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFG 354 (395)
T ss_pred HHHHHHHHHhhhh----HH--HHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHh
Confidence 5555555433321 11 111 12223333444455555544443 3456678889999999999999999999
Q ss_pred HHHhhhh-cCcEehhhHHHHHHHHHHhh
Q 010273 447 SVSHAIT-VGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 447 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 473 (514)
.+.|..| |...++.++.+.++..+..+
T Consensus 355 ~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 355 FLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999876 44445555555444444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=206.82 Aligned_cols=372 Identities=10% Similarity=-0.055 Sum_probs=230.4
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHH--HHHHHHHHHHHHHhHH-HhhhhhhhHHHHHHHHHHH-HHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVL--VGILSIISLFGSLAGG-KTSDVLGRKWTIALAAIVF-QAG 124 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~-~~~ 124 (514)
+.+...++..++..+...+.+|.+.+|.|.|.+++|++ .+++.+...+.+++++ +..||+||||..++...+. ++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 34455567778888899999999999999999999997 4667888888888884 4799999988875555332 222
Q ss_pred HHHHH---hhhh-HHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc
Q 010273 125 AAIMT---LAPS-FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI 200 (514)
Q Consensus 125 ~~~~~---~~~~-~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 200 (514)
....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+. +.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~---l~~~~ 160 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLV---LFGKF 160 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 22222 2222 33444455556666776777777788888888888888888888888888888877766 34467
Q ss_pred cchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Q 010273 201 NWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWRE 280 (514)
Q Consensus 201 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
|||..|++.++..++..+..++++|+++. +. +.++++..+.++
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~----------------------------------~~~~~~~~~~~~ 203 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDRAVA---SP----------------------------------EAPLARRASLFR 203 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cc----------------------------------ccchhhHHHHHH
Confidence 99999999887776665555555443210 00 000011122344
Q ss_pred hhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCchh
Q 010273 281 IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVG-FTKTIFILIAIILIDKVGRKPL 359 (514)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~ 359 (514)
.++++. ++......+...........+.+.|+++.+.+.. ..+......+ ...+++.++.|++.||+|+|+.
T Consensus 204 ~l~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~-~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 276 (390)
T TIGR02718 204 FFRRPL------AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLE-WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT 276 (390)
T ss_pred HHcCcC------HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444322 1111111122222223344466778888765544 4455444444 4666778999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccCh-hhhhHHHHHHHHHHHHHH
Q 010273 360 LYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPL-RLRAQASALGAVGSRVSS 438 (514)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~ 438 (514)
+..+..+..+................. .. .........+......+..++...+..++ +.+++.+++.+...++|.
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 277 FILGVGLAGSLALLWFAQAAFWLAPGI--AV-AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCcH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 887665553332222211111101111 11 11111111111111123333444445554 789999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEehhhHHHHHHHHH
Q 010273 439 GAIAMSFLSVSHAITVGGTFFVFSLISALSVA 470 (514)
Q Consensus 439 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 470 (514)
.++|.+.|.+.|..|++..|...+++.+++.+
T Consensus 354 ~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 354 LIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999987777777666655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=209.19 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=220.1
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHh
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLAP-SFAVLIIGRLLAG 145 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G 145 (514)
...++.+++|++.++.+++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.+++.|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4456789999999999999888877767777899999999 5999999999999999999999874 5667778899999
Q ss_pred ccccccccchhhhhhhcccccc--ccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHH---
Q 010273 146 VGIGFGVMIAPLYIAEISPSIA--RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALAL--- 220 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~--- 220 (514)
++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++.+ .++.|||+.|++.++..++..+.+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l---~~~~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL---AAKYGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH---HHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998643 45688999999999999999999984 456799999999765444433322
Q ss_pred -hhccCChhHHHHcCCHHHHHHHH-----------HH-hccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 221 -FVIPESPRWLVMQGRIDEARLVL-----------SK-TNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 221 -~~~~e~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
..++|.++- ..+++.|...... .. ...+.+. ........... ......++..+..+.
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 270 (500)
T PRK09584 201 QRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEI-ARMALGVVALG--------IVVIFGKEAFAMKGA 270 (500)
T ss_pred HHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHH--------HHHHHHHHHhhcCHH
Confidence 223332110 0001111111000 00 0000000 00000000000 000000000000111
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhh----h-cC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc----C
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFK----G-AG---IKGNNELLAATVAVGFTKTIFILIAIILIDKV----G 355 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~ 355 (514)
-+++.+..+.+.. ....++......+.++. + .. ..-............+..++..++..++-+|. +
T Consensus 271 ~~~~~~~~~~~~~--~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~ 348 (500)
T PRK09584 271 ARRKMIVAFILML--EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLP 348 (500)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC
Confidence 1222221111110 00111111122222211 1 10 01111123333334445555555554444444 4
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHH
Q 010273 356 RKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSR 435 (514)
Q Consensus 356 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 435 (514)
..+.+.+++++.++++..+.......+..........+....+.+.......|...+++.+..|++.||.++|+......
T Consensus 349 ~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a 428 (500)
T PRK09584 349 MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA 428 (500)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44667777778788777766554321111111111233333444455555667888889999999999999998877666
Q ss_pred HHHHHHHHHHHHHHh----------hhhcCcEehhhHHHHHHHHHHhhh
Q 010273 436 VSSGAIAMSFLSVSH----------AITVGGTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 436 ~g~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 474 (514)
+|..++..+...... ..++...|...++++++..++.+.
T Consensus 429 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 429 GAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555542211 113456666666665555444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=189.58 Aligned_cols=374 Identities=12% Similarity=0.059 Sum_probs=245.7
Q ss_pred hhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010273 59 GYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG-RKWTIALAAIVFQAGAAIMTLAPSFAVL 137 (514)
Q Consensus 59 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (514)
.+..+.+.|..+..-++.|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++...+....++++.+
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 335666777888888889999999999999999999999999999999986 6888888888888887788888899999
Q ss_pred HHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHH-hhhcccCCCCccchhhHhhchHHHHHH
Q 010273 138 IIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYIS-NYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 138 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
++.-++..+...+..|...++..+... +++.-.|-.....++|.+++... ++.+....+..+..+.+++.+...++.
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll 172 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLL 172 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 888888888888888888888888765 44556677777777777766443 222111212223335566666555555
Q ss_pred HHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHH
Q 010273 217 ALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGC 296 (514)
Q Consensus 217 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (514)
....+.+|+.|+- + + .+...++.......++++ ++.+..+
T Consensus 173 ~~~~l~lp~~~~~---~-~------------------------------~~~~~~~~~~~~~~~llk------~~~~~~F 212 (400)
T PF03825_consen 173 AGFALFLPKTPPK---R-S------------------------------AKESVKKLLGLDALKLLK------NPRFLVF 212 (400)
T ss_pred HHHHHhCCCCccc---c-c------------------------------cCCCcccccchHHHHHhc------CccHHHH
Confidence 5556677877620 0 0 000001111111223443 2333333
Q ss_pred HHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 010273 297 GIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSL 376 (514)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 376 (514)
.+..+...........|.+.|+++.+..+....+.......++.++.-...+++..|+|.++.+.++.+..++=..++..
T Consensus 213 ll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 213 LLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445566778899999988544445455455567889999999999999999999999888887776666654
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcC
Q 010273 377 SLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVG-SRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
... +...............+............++.+..|++.|+++.|+.+.. ..+|..++..+.|++.|+.|.+
T Consensus 293 ~~~----~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 293 FSD----PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred hcC----CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 411 11111111111011122211122234557889999999999999998765 6789999999999999988866
Q ss_pred cEe------hhhHHHHHHHHHHhhhcccc
Q 010273 456 GTF------FVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 456 ~~~------~~~~~~~~~~~~~~~~~~~~ 478 (514)
..+ .+.+++.++..++.+++.|+
T Consensus 369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 369 GMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 533 33344344444443444443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=180.57 Aligned_cols=401 Identities=14% Similarity=0.094 Sum_probs=270.8
Q ss_pred CCCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHH
Q 010273 38 GSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALA 117 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 117 (514)
.+..+++|+++++.++..+..++....+++...+...-+| +.+..-|+.-+|.+.+....+++-|+.|++|-|..++++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 4566788888888888889888888888888888888889 788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------hhHH--HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHH
Q 010273 118 AIVFQAGAAIMTLA------PSFA--VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYIS 189 (514)
Q Consensus 118 ~~~~~~~~~~~~~~------~~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 189 (514)
..+.++|..+-..+ +.++ ....+..+.+.+.-.....-..+..-||+++||+.+..+-.+++.+|.++|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 99999999987766 2445 677889999998887777777888999999999999999999999999999888
Q ss_pred hhhcccCC---CCccchh--hHhhchHHH-HHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 010273 190 NYAFSRLP---AHINWRV--MLGVGILPS-VFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVA 263 (514)
Q Consensus 190 ~~~~~~~~---~~~~Wr~--~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (514)
...+..-. ++..|-. .|+....+. +...+..+..++.|+.-. ..+.
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp-----s~s~----------------------- 247 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP-----SASQ----------------------- 247 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----chhH-----------------------
Confidence 88864322 2345664 354333333 333233344444332100 0000
Q ss_pred hccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q 010273 264 AGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIF 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
.......-..+.++.+++ +.+.............++...+.+...+...++.. ...|+......++++++
T Consensus 248 ---~~~~~~~f~~si~~~~~n------~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~-~~aG~ig~l~iv~Gmlg 317 (480)
T KOG2563|consen 248 ---AALQDASFPKSIKSCFKN------RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEG-VFAGYIGALMIVAGMLG 317 (480)
T ss_pred ---hhhhcCcHHHHHHHHHcC------ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCc-cccchhHHHHHHHHHHH
Confidence 000011233444555543 33333333333333333344333333333334333 56677777788999999
Q ss_pred HHHHHHHHhhcCCc-hhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh
Q 010273 344 ILIAIILIDKVGRK-PLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL 422 (514)
Q Consensus 344 ~~~~g~l~d~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 422 (514)
+.+.|.+.||.+.- .+..+......++...+...... .....++...+...+++..+..|+-.-+..|..-|..
T Consensus 318 a~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 318 ALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence 99999999998764 34444444444442222222111 1113334455566677888888999999999866677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCcEehhhHHHHHHHHHHhhhccccCCCC
Q 010273 423 RAQASALGAVGSRVSSGAIAMSFLSVSHAIT----VGGTFFVFSLISALSVAFVYKCVPETKGK 482 (514)
Q Consensus 423 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (514)
-++..|+.+..+++-+.+-..+.+...+..+ +...-+.+...+++..++..++.++.+++
T Consensus 393 E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 393 EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 7899999999999999998998888887766 44444555555555555555554444433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=182.93 Aligned_cols=394 Identities=13% Similarity=0.076 Sum_probs=247.9
Q ss_pred hhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhh----hhhhHHHHHHH-HHHHHHHHHHHHhhhhH
Q 010273 60 YDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD----VLGRKWTIALA-AIVFQAGAAIMTLAPSF 134 (514)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~ 134 (514)
+......+..+.+.+++|.++.+.+++..+..+...+.+++.|+++| |+|||+.++.+ .....++.++.++++++
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 35555666677777899999999999999999999999999999999 59999988775 66666777777777664
Q ss_pred H-----------------HHHHHHHHHhccccccccchhhhhhhccccccc--cccchhhHHHHHHHHHHHHHHhhhcc-
Q 010273 135 A-----------------VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIAR--GSLTSFPEIFINLGILLGYISNYAFS- 194 (514)
Q Consensus 135 ~-----------------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~~~- 194 (514)
+ .++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++...
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 223333344457777778889999999998865 57999999999999999999988641
Q ss_pred -cC---C-CC------ccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHH
Q 010273 195 -RL---P-AH------INWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQV 262 (514)
Q Consensus 195 -~~---~-~~------~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
.. . .. .+.|+.|++.++..++..++ .+..+|.|... .++.++ + +.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~-----------------~~~~ 236 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S-----------------EAAP 236 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h-----------------hccc
Confidence 10 0 00 25688999977776666555 66688876310 000000 0 0000
Q ss_pred HhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhh-cCCCCc------hH----HHH
Q 010273 263 AAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKG-AGIKGN------NE----LLA 331 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~----~~~ 331 (514)
..+.+..+.-+.-++.+.+.++.. +.++...++.+.+++.+..|.+.+..+ ..+.++ +. +.+
T Consensus 237 --~~~~~~~~~~~~i~~~~~~mP~~m-----~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~ 309 (477)
T TIGR01301 237 --PSKHGEEAFFGELFGAFKYLPRPV-----WILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF 309 (477)
T ss_pred --ccccchhhhHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence 000000111122233333323333 333344444555555666666666553 222111 11 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHHHHHHHHHHhcC------------cchhhHHHHHHHHHH
Q 010273 332 ATVAVGFTKTIFILIAIILIDKVGR-KPLLYVSTIGMTICLLSLSLSLTFLGN------------GQLGIALAILSVCGN 398 (514)
Q Consensus 332 ~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 398 (514)
......+...+.+++..++.+|+|+ |+....+.++.++++....+.....++ +........+..+..
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 3444555556677788889999985 566677777777777766654431110 000101222333333
Q ss_pred HhhhccccccccceeeeeccCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCcEehhhHHHHHHHHHHhhh
Q 010273 399 VAFFSVGIGPVCWVLSSEIFPL--RLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT--VGGTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~ 474 (514)
.++.......+.++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++.+...+
T Consensus 390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 4444444456778888888884 455999999999999999999988888666555 233456666677777777777
Q ss_pred ccccCCC
Q 010273 475 CVPETKG 481 (514)
Q Consensus 475 ~~~~~~~ 481 (514)
.+|+.+.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 7877653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-21 Score=181.95 Aligned_cols=152 Identities=15% Similarity=0.221 Sum_probs=122.8
Q ss_pred cchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 010273 65 MSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAP-SFAVLIIGR 141 (514)
Q Consensus 65 ~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r 141 (514)
....+| ++.+++|+++.+.+.+.+.+.....++++++|+++||+ |||++++++.++.+++.++.+..+ +...+.+..
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 333444 66788999999999999999999999999999999999 999999999999999988776543 223344444
Q ss_pred HHHhccccccccchhhhhhhccccc--cccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSI--ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
.+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+.+ .++.||++.|.+.++..++.++.
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L---~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA---QEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH---HhhhChHHHHHHHHHHHHHHHHH
Confidence 4555666777788889999999875 799999999999999999999999994 44679999999876544444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=191.15 Aligned_cols=384 Identities=11% Similarity=-0.028 Sum_probs=230.0
Q ss_pred HHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh-----hHHHHHHHHHHHH-H
Q 010273 50 FASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG-----RKWTIALAAIVFQ-A 123 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~ 123 (514)
++...++..++.........+.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ +
T Consensus 30 ~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~ 108 (468)
T TIGR00788 30 IGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAI 108 (468)
T ss_pred HHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 33334455566644445566678889999999999999999999999666 999999998 7888888877763 4
Q ss_pred HHHHHHhhhhHHHHH-HHHHHHhccccccccchhhhhhhcccccccccc---chhhHHHHHHHHHHHHHHhhhcccCCCC
Q 010273 124 GAAIMTLAPSFAVLI-IGRLLAGVGIGFGVMIAPLYIAEISPSIARGSL---TSFPEIFINLGILLGYISNYAFSRLPAH 199 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 199 (514)
+....+..++..... +.+++.+++.+...++.-++..|..+ +++... .++.....++|.++|+.+++.+ .+.
T Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l---~~~ 184 (468)
T TIGR00788 109 LYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL---LDK 184 (468)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 434444445544444 48899999999999999999999998 555443 3344444558999999999884 445
Q ss_pred ccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHH
Q 010273 200 INWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWR 279 (514)
Q Consensus 200 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (514)
.+||..|++.+...++..+..++++|++.....+.+ ++... ...... .. ..+..++......
T Consensus 185 ~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~---------~~~~~~-~~-------~~~~~~~~~~~l~ 246 (468)
T TIGR00788 185 TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEM---------NMALLT-LG-------VLANVKVQILGLR 246 (468)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchh---------hhhhhh-hh-------HHHHHHHHHHHHH
Confidence 799999999777777666667778886410000000 00000 000000 00 0000001111122
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 010273 280 EIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPL 359 (514)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~ 359 (514)
..++. +.........+.. ............++.+ +.. +.++...+......+++.+++..+.+++.+|++.|+.
T Consensus 247 ~~l~~-~~i~~~l~fifl~-~~~~~~~~~~~f~~~~---~~l-G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~ 320 (468)
T TIGR00788 247 GAIQL-LEIAKPLIFIFLS-YANLPGASGSVFCATT---QCL-PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL 320 (468)
T ss_pred HHHhc-HHHHHHHHHHHHH-HhhcCCCCceeEEEEc---ccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 22331 2222212211110 1111111111111111 233 4455566777777889999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcC----cchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHH
Q 010273 360 LYVSTIGMTICLLSLSLSLTFLGN----GQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSR 435 (514)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 435 (514)
+.++.++.+++..........++. +.. +.................. ....++.+..|++.+|+.+|+.+.+.+
T Consensus 321 l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~--~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~ 397 (468)
T TIGR00788 321 FGVTTLLYTLSSLFDLILVKRWNLAFGISDE--VFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILH 397 (468)
T ss_pred HHHHHHHHHHHHhCceeeeeccccccCCCCe--eeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHH
Confidence 888877777665443211111110 111 1111111111112222222 335778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-----cCcEehhhHHHH
Q 010273 436 VSSGAIAMSFLSVSHAIT-----VGGTFFVFSLIS 465 (514)
Q Consensus 436 ~g~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~ 465 (514)
+|..+++.+.+.+.+..| ++..+....+..
T Consensus 398 lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~ 432 (468)
T TIGR00788 398 LGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHS 432 (468)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHH
Confidence 999999999999998888 555554443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=191.30 Aligned_cols=352 Identities=11% Similarity=0.017 Sum_probs=209.7
Q ss_pred hhhhcch-hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhh----hhhh-HHHHHHHHHHHHHHHHHHHhhh--
Q 010273 61 DVGVMSG-AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD----VLGR-KWTIALAAIVFQAGAAIMTLAP-- 132 (514)
Q Consensus 61 ~~~~~~~-~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~-- 132 (514)
..+...+ ...++.+.+|+++..+|.+..+..+.-++..|+.|+++| |+|| |+.++.+....+++.+++-..+
T Consensus 21 ~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~ 100 (473)
T PRK10429 21 AIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLF 100 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCC
Confidence 3334444 344677788999999999999999999999999999999 6698 7777888888888766654432
Q ss_pred ----hHHHHHHHHHHHhccccccccchhhhhhhcc-ccccccccchhhHHHHHHHHHHHHHHhhhc----ccCCCCccch
Q 010273 133 ----SFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS-PSIARGSLTSFPEIFINLGILLGYISNYAF----SRLPAHINWR 203 (514)
Q Consensus 133 ----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~~~~Wr 203 (514)
.+..+++.-++.+++.....+.-.++..|.. ++++|.+..++...+.++|..+.+.+...+ ....+..+|+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~ 180 (473)
T PRK10429 101 EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQ 180 (473)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 1345556666778888878888889999998 588999988887777777655544433221 1111224677
Q ss_pred hhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhh
Q 010273 204 VMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREII 282 (514)
Q Consensus 204 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
...++.++..++..+. ++..+|.++. .+. ...++++.+.+..++.++
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~----------------------------~~~~~~~~~~~~~~~~~~ 228 (473)
T PRK10429 181 MFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ----------------------------VSAEGSHLTLKDIVALIY 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcCceecCCc----ccc----------------------------ccccccCCCHHHHHHHHh
Confidence 7777666555554443 4446664310 000 000001112233344444
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh
Q 010273 283 NPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYV 362 (514)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~ 362 (514)
++ +.++.... ..+...........+.+++.+...+. ....+.......+..+++.++.+++.||+|+|+.+..
T Consensus 229 ~n-~~~~~ll~-----~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 229 KN-DQLSCLLG-----MALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred cC-HHHHHHHH-----HHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 42 22222211 11111122222222333344433332 3334444554567888999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-------hhhhhHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-------LRLRAQASALGAVGSR 435 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~ 435 (514)
+..+..++.+.+...... ..... +...+ .....+.......+..+++.+|..+ .+..|..+|.......
T Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i-~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLA-APHNA--LLIVI-AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred HHHHHHHHHHHHHHHhcc-CchhH--HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 776655554443322111 11111 11111 1111222222233455566777744 3345668899999999
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 010273 436 VSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 436 ~g~~~~~~~~~~~~~~~g~~ 455 (514)
++..+++.+.|.+.+..||.
T Consensus 378 ~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 378 GGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999877763
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=175.21 Aligned_cols=369 Identities=14% Similarity=0.038 Sum_probs=233.3
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHH
Q 010273 42 KYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIV 120 (514)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~ 120 (514)
.++...++..|+..|-.+++....+....+...|.+++.++..++.+.|+....+-+.++|++.|| +|-|..-++-...
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 455666777778888889999999999999999999999999999999999999999999999997 5888766666666
Q ss_pred HHHHHHHHH---hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC
Q 010273 121 FQAGAAIMT---LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP 197 (514)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 197 (514)
..++.+.++ ..+.+|.+..+||+.|+|.-....+.+.+...|+..||.+.++|+......+|..+-..+.+++.+-.
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 677777665 45899999999999999998888889999999999999999999999999999876655555432210
Q ss_pred CCccchhhHhhchHHHHHHHHHHh---hccCChhHHHHcC-CHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhh
Q 010273 198 AHINWRVMLGVGILPSVFIALALF---VIPESPRWLVMQG-RIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNE 273 (514)
Q Consensus 198 ~~~~Wr~~f~~~~~~~~~~~~~~~---~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (514)
+ . ++-+..-..+.+.+.+ ....+---....+ ..|+|++.++ .++....
T Consensus 200 ---~--~-~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh-----------------~e~g~~G----- 251 (459)
T KOG4686|consen 200 ---G--R-MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILH-----------------LEEGFLG----- 251 (459)
T ss_pred ---H--H-hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh-----------------hhcCccc-----
Confidence 0 0 0000000000000000 0000000000000 0111111111 1110000
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
+.....+... ..+-+|.+...++........+....|.++++..+.++..++.+.........+.+++.|.++||
T Consensus 252 e~pkLtdv~~-----f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk 326 (459)
T KOG4686|consen 252 EEPKLTDVNT-----FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK 326 (459)
T ss_pred CCcccccccc-----cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh
Confidence 0011111111 12234444445555555555666677888877655555555555555667778889999999999
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHH
Q 010273 354 VGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVG 433 (514)
Q Consensus 354 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 433 (514)
+|++...+.+..+..+..-........ .++..+... ++ .++. .....|..++.+.|.+.-|++.|..+.+
T Consensus 327 ~G~n~~wv~~a~~~tl~~H~~l~Ft~l------sPy~~m~~l-GL--sysl-lAcslWP~va~~vpE~qLGTaygf~qsI 396 (459)
T KOG4686|consen 327 YGFNLWWVASACILTLLGHSGLFFTFL------SPYTSMTFL-GL--SYSL-LACSLWPCVASLVPEEQLGTAYGFIQSI 396 (459)
T ss_pred hcceehhHHHHHHHHHHHhhhHHhhhc------cHHHHHHHH-hh--hHHH-HHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence 999876665544443332222222111 002111111 11 1111 1113455666777989999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 010273 434 SRVSSGAIAMSFLSVSHAIT 453 (514)
Q Consensus 434 ~~~g~~~~~~~~~~~~~~~g 453 (514)
.++|-++.|.+.|.+.|.-|
T Consensus 397 qNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 397 QNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HhhhhhHHhhhhheeecCCC
Confidence 99999999999999998765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=180.77 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=206.8
Q ss_pred hhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HH
Q 010273 67 GAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV----LGR-KWTIALAAIVFQAGAAIMTLAPS------FA 135 (514)
Q Consensus 67 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~ 135 (514)
...+++.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+....+++.++....++ ++
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~ 110 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII 110 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 35567888999999999999999999999999999999999 776 56677787777777766554442 45
Q ss_pred HHHHHHHHHhccccccccchhhhhhhcc-ccccccccchhhHHHHHHHHHHHHHHhhhccc-C---CCCccchhhHhhch
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEIS-PSIARGSLTSFPEIFINLGILLGYISNYAFSR-L---PAHINWRVMLGVGI 210 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~-~---~~~~~Wr~~f~~~~ 210 (514)
.+++..++.+.+.......-.++..|+. ++++|.+..++......+|..+++.+...+.. + ....+|+..+.+.+
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 5666666667666666667778999988 56789988888888888887776654432211 1 12358888888776
Q ss_pred HHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHH
Q 010273 211 LPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVR 289 (514)
Q Consensus 211 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
++.++..+. ++..+|.++. +++++.+.....+..+++++ ++
T Consensus 191 ii~~v~~~~~~~~~~e~~~~-------------------------------------~~~~~~~~~~~~~~~~~n~~-~~ 232 (444)
T PRK09669 191 LLGVVLFFCCFFMTKERYTP-------------------------------------EVDNSSSVWKDLKLLLGNSQ-WR 232 (444)
T ss_pred HHHHHHHHHHhCCeEEecCC-------------------------------------CCcCCCCHHHHHHHHhCCch-HH
Confidence 666555444 3444543210 00011122334455555333 22
Q ss_pred HHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 010273 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTI 369 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 369 (514)
......+....... ......+++.+... ..............+..+++.++.++++||+|+|+....+.++..+
T Consensus 233 ~l~~~~~~~~~~~~-----~~~~~~~y~~~~~~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 233 IMFIFNVVLLTAVV-----TRGGATLYYVNYVL-LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI 306 (444)
T ss_pred HHHHHHHHHHHHHH-----HHhhhhheeeeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22111111111111 11111122222222 2233333444445577788889999999999999988877655444
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-------hhhhhHHHHHHHHHHHHHHHHHH
Q 010273 370 CLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-------LRLRAQASALGAVGSRVSSGAIA 442 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~ 442 (514)
+...+.+.. ..+. +.. .......+.......+..+++.+|..+ .+..|..+|+.+....+|.++++
T Consensus 307 ~~~~~~~~~----~~~~--~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~ 379 (444)
T PRK09669 307 LSALIFFIP----PSNV--WLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGG 379 (444)
T ss_pred HHHHHHHhC----cchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHH
Confidence 332222211 1111 111 222222333333444667777877764 23346778899999999999999
Q ss_pred HHHHHHHhhhhcC
Q 010273 443 MSFLSVSHAITVG 455 (514)
Q Consensus 443 ~~~~~~~~~~g~~ 455 (514)
.+.|.+.+..|+.
T Consensus 380 ~i~g~ll~~~Gy~ 392 (444)
T PRK09669 380 AVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988774
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=177.79 Aligned_cols=336 Identities=9% Similarity=0.008 Sum_probs=194.7
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh----hhHH-HHHHHHHHHHHHHHHH-Hh----hh--hHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL----GRKW-TIALAAIVFQAGAAIM-TL----AP--SFA 135 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~-~~~~~~~~~~~~~~~~-~~----~~--~~~ 135 (514)
..+++.+.+|++..++|.+.+...+..++..++.|+++||. |||+ .++.+.+...+..++. .. ++ ..+
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 44578888999999999999999999999999999999996 7666 4455655555444443 21 11 223
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccc-cccccccchhhHHHH-----HHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFI-----NLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
.+++.-++.+++.+...+...++..+..+ +++|.+..++-..+. .++..++|.+++...... ..+|.....+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~ 189 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHH
Confidence 34455567788788777777777777654 467887766554433 345555666655421100 01222111222
Q ss_pred hHHHHHHH-HHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 ILPSVFIA-LALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
++.+++.. +.....||+++ .+.++...+..++.++++++
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~--------------------------------------~~~~~~~~~~~~~~l~~n~~-- 229 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVV--------------------------------------RIVAQPSLKISLQTLKRNRP-- 229 (448)
T ss_pred HHHHHHHHHHHHcCcEeccC--------------------------------------CCccCCCHHHHHHHHhCCch--
Confidence 22222222 22333455431 00011112233555555332
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMT 368 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 368 (514)
+.......++..........+.|.++++..+.+....++......++.+++.++.+++.||+++|+.+.++.++..
T Consensus 230 ----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~ 305 (448)
T PRK09848 230 ----LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGT 305 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2222222222222233334455666666555555444444444456677889999999999999999988887777
Q ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChh-------hhhHHHHHHHHHHHHHHHHH
Q 010273 369 ICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR-------LRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~ 441 (514)
++.+.+.+.. .... +.... .....+.......+..+++..|..|.+ .+|..+|+.+....+|..++
T Consensus 306 i~~~~~~~~~----~~~~--~~~~~-~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig 378 (448)
T PRK09848 306 CGYLLFFWVS----VWSL--PVALV-ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG 378 (448)
T ss_pred HHHHHHHHcC----chhH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence 6665554211 1111 11111 111222222233345566666776543 45899999999999999999
Q ss_pred HHHHHHHHhhhhcC
Q 010273 442 AMSFLSVSHAITVG 455 (514)
Q Consensus 442 ~~~~~~~~~~~g~~ 455 (514)
+.+.+.+.+..||.
T Consensus 379 ~~i~g~~l~~~G~~ 392 (448)
T PRK09848 379 GSIPAFILGLSGYI 392 (448)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999988877663
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=172.23 Aligned_cols=370 Identities=15% Similarity=0.153 Sum_probs=218.3
Q ss_pred hhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH--HHHH-HHHHhh----h
Q 010273 61 DVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF--QAGA-AIMTLA----P 132 (514)
Q Consensus 61 ~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~-~~~~~~----~ 132 (514)
..+...|..+. +.++.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+. ..+. +...+. .
T Consensus 22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~ 101 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666664 55668999999999999999999999999999999999665544333222 1122 222222 2
Q ss_pred hHH-HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 133 SFA-VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 133 ~~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
|.+ ..+++-+..|+...+..|+.-+++.++. ++.+.-.|-..+..++|.+++..++|.+.+ .+-+..||+...
T Consensus 102 n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~ 175 (412)
T PF01306_consen 102 NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASA 175 (412)
T ss_dssp T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHH
Confidence 322 2233333444444445555555555543 234555677778888999999988888543 244677887666
Q ss_pred HHHHHHHHHhh-ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALALFV-IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
.+++..++.++ -|+.++.. +..+....++++.+.++.++ .+|.
T Consensus 176 ~~~il~lll~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~---l~k~ 219 (412)
T PF01306_consen 176 AAIILLLLLLLLKPDVPPQA---------------------------------EVADALGAKKDKVSLKDVLS---LFKM 219 (412)
T ss_dssp HHHHHHHHHHSS---SSSSS----------------------------------SSTTSSS------HHHHHH---HTTS
T ss_pred HHHHHHHHHHHcCCcCchhh---------------------------------hhhcccccCCCCCcHHHHHH---Hhcc
Confidence 55555444333 33333100 00011111222223333322 2333
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIK---GNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 367 (514)
+.+|.+.+........+.......+.|+.....+ +....++......+..++...+.+++.+|+|.|+.++++..++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~ 299 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 4444443333333233333333345555443322 2234566666677888899999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSGAIAMSFL 446 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~ 446 (514)
.+=....++.... +.+...-..-..-+.. ......-|+++.+|++..++...+. +...+++..+.+.+.|
T Consensus 300 ~iRi~~~~~~~~~--------~~i~~~klLH~~e~~l-~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 300 AIRIIGSGFATNP--------WVISLIKLLHALEFPL-LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHHHHHT--SH--------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcch--------HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8776666655432 2222222222211211 1123446788999999999999885 6888999999999999
Q ss_pred HHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 447 SVSHAITVGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 447 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
.++|+.|++.++++++.+.+...++..+.+++.++
T Consensus 371 ~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 371 YLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999999889999999888888877777665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-20 Score=177.12 Aligned_cols=341 Identities=14% Similarity=0.109 Sum_probs=237.3
Q ss_pred hhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhh----hhhhH-HHHHHHHHHHHHHHHHHHhh-h-------h
Q 010273 67 GAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD----VLGRK-WTIALAAIVFQAGAAIMTLA-P-------S 133 (514)
Q Consensus 67 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr-~~~~~~~~~~~~~~~~~~~~-~-------~ 133 (514)
...+...+.+|+++...|.+..+..+..++..|+.|.++| |+||| +.++++....+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4566778888999999999999999999999999999999 89965 56667888888888887766 4 2
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhhccc-cccccccchhhHHHHHHHHHHHHHHhhhccc-CCCC---ccchhhHhh
Q 010273 134 FAVLIIGRLLAGVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFINLGILLGYISNYAFSR-LPAH---INWRVMLGV 208 (514)
Q Consensus 134 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~-~~~~---~~Wr~~f~~ 208 (514)
...+.+.-++..++.........++..|..+ +++|.+..++-..+..+|..+...+.+.+.. +.+. .+|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345677777788888888888999999997 5789999999988888888765555554332 2221 279999888
Q ss_pred chHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 209 GILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 209 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
.+++.++..++ .+..+|.++ + ..+++++.+.+..+++.+++++
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~------~-----------------------------~~~~~~~~~~~~~~~~~~~nr~- 226 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV------E-----------------------------VTEQEKKISLRDSLRSLFRNRP- 226 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc------c-----------------------------ccccccccccccchhhhcccch-
Confidence 77777766555 555676221 0 0011122223334555555332
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGM 367 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 367 (514)
+..+....++...+........++|.+...+.+. ..+.......+..+++.++.++++||+|+|+.+..+..+.
T Consensus 227 -----~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 227 -----FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred -----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence 2222333333344444455556666666544443 3445555677889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccCh-------hhhhHHHHHHHHHHHHHHHH
Q 010273 368 TICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPL-------RLRAQASALGAVGSRVSSGA 440 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~~ 440 (514)
+++...+.+.... + ...........+..........+++.+|..+. +..|..+|+.+....++..+
T Consensus 301 ~~~~~~~~~~~~~----~---~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l 373 (428)
T PF13347_consen 301 ALGFLLLFFLGPG----S---PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL 373 (428)
T ss_pred HHHHHHHHHHHhh----h---HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH
Confidence 8877776665420 1 22233333334444445556777888888763 33588999999999999999
Q ss_pred HHHHHHHHHhhhhcCc
Q 010273 441 IAMSFLSVSHAITVGG 456 (514)
Q Consensus 441 ~~~~~~~~~~~~g~~~ 456 (514)
++.+.+.+.+..|+..
T Consensus 374 a~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 374 AGAIVGLLLALVGYDA 389 (428)
T ss_pred HHHHHHHHHHHhCcCC
Confidence 9999999988777653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=165.65 Aligned_cols=360 Identities=15% Similarity=0.117 Sum_probs=234.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccccccchhh
Q 010273 81 VQQEVLVGILSIISLFGSLAGGKTSDVLGRKW-TIALAAIVFQAGAAIMTLA--PSFAVLIIGRLLAGVGIGFGVMIAPL 157 (514)
Q Consensus 81 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~ 157 (514)
+..++..++..+..++..|+.|.++|+-|+|| .+.+...+..+++.+..+. .+++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999998654 5555556666677777764 34555555566666777777888899
Q ss_pred hhhhccccccc--------------------------cccchhhHHHHHHHHHHHHHHhhhcccCCC-----CccchhhH
Q 010273 158 YIAEISPSIAR--------------------------GSLTSFPEIFINLGILLGYISNYAFSRLPA-----HINWRVML 206 (514)
Q Consensus 158 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-----~~~Wr~~f 206 (514)
++.|..+++++ ++..+.-.+...+|.++..++...+....+ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 888888888888888776665544321111 13457778
Q ss_pred hhchHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCC
Q 010273 207 GVGILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPS 285 (514)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
.+.++.-++..+ ..+++||.|+. ++ .....+..+..++++.+..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~----~~-------------------------------~~~~~~~~~~g~~~l~~t~ 274 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP----RP-------------------------------LPSGSSYLRFGFKRLWRTF 274 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC----CC-------------------------------CCcchhHHHHHHHHHHHHH
Confidence 776666555444 46678887631 00 0000011111222211110
Q ss_pred -HHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhhh
Q 010273 286 -PAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRK--PLLYV 362 (514)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--~~~~~ 362 (514)
...+.+.+..+++..++..-+...+......|.++..+.+........+...+.+++|.++.|++.||+|.| +.+..
T Consensus 275 k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 275 KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI 354 (477)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 112233333444555555556667777778888865556666667777778899999999999999999998 66666
Q ss_pred hhHHHHHHHHHHHH--HHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHH
Q 010273 363 STIGMTICLLSLSL--SLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440 (514)
Q Consensus 363 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 440 (514)
..++..+..+...+ ........+ ..-+.......+.+..+..+..-++.+|+.|+++.+..+|++...+...+.+
T Consensus 355 ~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~l 431 (477)
T PF11700_consen 355 SLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWL 431 (477)
T ss_pred HHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence 55554332222211 111100111 1112333334445555667788899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhccccC
Q 010273 441 IAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 441 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
||.++|.+.+..| .+..+....++.+++.++. ..++..
T Consensus 432 GPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 432 GPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccch
Confidence 9999999999887 5566666666666666664 434433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=165.75 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=188.2
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC--C--------
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP--A-------- 198 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~--~-------- 198 (514)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|.+++|++++.+.... +
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 345789999999999999999999999999999999999999999999999999999999998754211 0
Q ss_pred ---CccchhhHhhchHHHHHHHHHHhh--ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhh
Q 010273 199 ---HINWRVMLGVGILPSVFIALALFV--IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNE 273 (514)
Q Consensus 199 ---~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (514)
..+|+++|++.+...++..+.+.+ +||.++ +.++ + ...++..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~-------------------------~~~~~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--R-------------------------VSSGDTT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--c-------------------------ccccccc
Confidence 147999999655554444444433 344321 0000 0 0000000
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGA--GIKGNNELLAATVAVGFTKTIFILIAIILI 351 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 351 (514)
+ . ++.++++.++...+..++..........|.+.|+.+. .+.+....+........+.++++++++++.
T Consensus 132 ~---~------~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~ 202 (310)
T TIGR01272 132 Q---K------TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVM 202 (310)
T ss_pred c---h------hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1122333444444555555555667788999999754 345566667777778899999999999999
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH
Q 010273 352 DKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431 (514)
Q Consensus 352 d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (514)
||+++|+.+..+..+..++..+..... ... ... .....+++.....|...+...+..|+ +.+++.++.
T Consensus 203 ~r~g~~~~l~~~~~l~~~~~~l~~~~~-----~~~----~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~- 270 (310)
T TIGR01272 203 PMISQGRYLAFNAFLAVLLSIGAALTH-----GYV----AMW-FVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL- 270 (310)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcC-----CHH----HHH-HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-
Confidence 999999888777666555543332211 111 111 12233445555667777777777664 356677775
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcEehhh
Q 010273 432 VGSRVSSGAIAMSFLSVSHAITVGGTFFVF 461 (514)
Q Consensus 432 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 461 (514)
..+.+|+++.|.+.|.+.|..|.+.++++.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 678899999999999999988877666533
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=165.47 Aligned_cols=336 Identities=12% Similarity=0.035 Sum_probs=197.5
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh----hhhH-HHHHHHHHHHHHHHHHHHhhhh------HHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV----LGRK-WTIALAAIVFQAGAAIMTLAPS------FAV 136 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~ 136 (514)
...+..+.+|+++..+|.+..+.-+.-++.-|+.|+++|| +||| +.++++....+++.+++-..++ ...
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4446778899999999999999999999999999999996 6865 6666777788877776654442 344
Q ss_pred HHHHHHHHhccccccccchhhhhhhccc-cccccccchhhHHHHHHHHHHHHHHhhhccc-CC---CCccchhhHhhchH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFINLGILLGYISNYAFSR-LP---AHINWRVMLGVGIL 211 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~-~~---~~~~Wr~~f~~~~~ 211 (514)
+.+.-++..++.......-.++..|..+ ++||.+..++...+..+|..+++.+...+.. .. +..+|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 5556666777777777788889999886 7899999999999999888777666433221 11 12467877766665
Q ss_pred HHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
+.++...+ +...+|.++ .+.++.+.+...+..+++++ ++.
T Consensus 192 i~~i~~~i~~~~~kE~~~--------------------------------------~~~~~~~~~~~l~~~~~Nk~-~~~ 232 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVE--------------------------------------APPTTTSMREDLRDIWQNDQ-WRI 232 (460)
T ss_pred HHHHHHHHHHhcceeccC--------------------------------------CCccCCCHHHHHHHHhCChH-HHH
Confidence 55554443 333444331 00001112233444444322 221
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
.... .+..............|...| ..+. ............+..+++.+++++++||+++|+.......+..+.
T Consensus 233 l~~~--~~~~~~~~~~~~~~~~y~~~y---~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~ 306 (460)
T PRK11462 233 VGLL--TIFNILAVCVRGGAMMYYVTW---ILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVI 306 (460)
T ss_pred HHHH--HHHHHHHHHHHHhHhhhhhhh---hcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 1111 111111111111111222222 2222 223334455567888889999999999999988766544433332
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-------hhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-------LRLRAQASALGAVGSRVSSGAIAM 443 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 443 (514)
..++.+.. .... ....+..+. .++......+..+++..|..+ .+..|...+.......+|.++++.
T Consensus 307 ~~~~~~~~----~~~~--~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~ 379 (460)
T PRK11462 307 SLAMFFVP----MQAS--ITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA 379 (460)
T ss_pred HHHHHHhc----hhHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 1111 111111111 122222233444555666544 233355567777889999999999
Q ss_pred HHHHHHhhhhcC
Q 010273 444 SFLSVSHAITVG 455 (514)
Q Consensus 444 ~~~~~~~~~g~~ 455 (514)
+.|.+.+..|+.
T Consensus 380 i~g~iL~~~Gy~ 391 (460)
T PRK11462 380 LIGWMLAYGGYD 391 (460)
T ss_pred HHHHHHHHcCCC
Confidence 999988876663
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=154.55 Aligned_cols=400 Identities=16% Similarity=0.087 Sum_probs=239.6
Q ss_pred chhHhhhhhccc----cChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhh--hHHHHH
Q 010273 66 SGAIIFIKEDLK----ITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAP--SFAVLI 138 (514)
Q Consensus 66 ~~~~~~i~~~~~----~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 138 (514)
.+..-++..+++ +++++..-+.+.|..-.-+..+++|+++||+ |+|+++..|.+++.+|.++.+.+. +...++
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~ 121 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY 121 (498)
T ss_pred HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 334556666665 9999999999999888889999999999997 999999999999999999999884 788999
Q ss_pred HHHHHHhccccccccchhhhhhhccccc--cccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAEISPSI--ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
++-.+.++|.|..-+...+++.|.+|++ +|-..+++++++.++|..++|++.+. +.++.||...|...++-....
T Consensus 122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~---~~~~~g~~~gF~~aavGm~~g 198 (498)
T COG3104 122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL---LAINYGWHVGFGLAAVGMIIG 198 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH---HHHhhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 47788999999999999999999999 445789999999988777766
Q ss_pred HHHHhhccCChhHHHHcC-----CHHHHHHH--------HHHh--ccChhh---HHHHHHHHHHH-----hccchhhhhh
Q 010273 217 ALALFVIPESPRWLVMQG-----RIDEARLV--------LSKT--NESVKE---VEERLAEIQVA-----AGSDNAEKNE 273 (514)
Q Consensus 217 ~~~~~~~~e~~~~~~~~~-----~~~~~~~~--------~~~~--~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~ 273 (514)
++.++..+..-.....+. +..+.... .... ...+.+ .......+... +.....+..+
T Consensus 199 l~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (498)
T COG3104 199 LVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFD 278 (498)
T ss_pred HHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHH
Confidence 665554432111000000 01111100 0000 000000 00000000000 0000000001
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
+++.... --+++....+.+.+..-....+..|.....++....-.....+......+.-++.+++..++..|
T Consensus 279 er~r~~~--------~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~ 350 (498)
T COG3104 279 ERRRLLA--------AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTK 350 (498)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhH
Confidence 1110000 01111112222222222233333343333332211111122333343555566667777777777
Q ss_pred cCCc-------hhhhhhhHHHHHHHHHHHHHHHHhcC-cchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhH
Q 010273 354 VGRK-------PLLYVSTIGMTICLLSLSLSLTFLGN-GQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQ 425 (514)
Q Consensus 354 ~~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 425 (514)
.+++ .-...+.+++.++++++......... ........++....+..+.-....|+..+++....|+...+.
T Consensus 351 l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~ 430 (498)
T COG3104 351 LGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSF 430 (498)
T ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHH
Confidence 4332 12445556666666666555222222 333334444455555666666777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 426 ASALGAVGSRVSSGAIAMSFLS------VSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 426 ~~g~~~~~~~~g~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
.+|+.......+..++..+.+. ..+.......|+..+...++..+......
T Consensus 431 ~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 431 IMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred HHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999887777777776666552 33344455567777776666666544443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=153.33 Aligned_cols=342 Identities=16% Similarity=0.119 Sum_probs=228.0
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV----LGR-KWTIALAAIVFQAGAAIMTLAPS------FAV 136 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~ 136 (514)
++-+..+.+|+++..+|.+..+.-+--++.-|+.|.+.|| +|| |+.++.+.+..++.+.++-.+++ ...
T Consensus 35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 3345778899999999999999999999999999999996 675 67888888999999888887763 445
Q ss_pred HHHHHHHHhccccccccchhhhhhhccc-cccccccchhhHHHHHHHHHHHHHHhhhcccCC-C---CccchhhHhhchH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFINLGILLGYISNYAFSRLP-A---HINWRVMLGVGIL 211 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-~---~~~Wr~~f~~~~~ 211 (514)
.++.-.+.+++.......-.++..+..+ ++||.+..++-+.+.++|..+...+...+..+. + ..||+..-++.++
T Consensus 115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v 194 (467)
T COG2211 115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV 194 (467)
T ss_pred HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence 5667788889888888888889999875 689999999999999998666544443322221 1 3578877777666
Q ss_pred HHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHH
Q 010273 212 PSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRR 290 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
.+++..+. ++-.+|.+.- ....+...+.+.+..+..++++++....
T Consensus 195 i~~i~~l~~~~~v~ER~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 195 IGVILLLFCFFNVKERVVE---------------------------------TQPTKTGVKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHHHHHHHHHhhcccCc---------------------------------cccCcccccccHHHHHHHHHccchHHHH
Confidence 66665555 3445555420 0000001222333334455554443332
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
.. ..++.+.+.+.......+|.+..-..+.............+.+++.++...+.+|+|+|++...+.++..++
T Consensus 242 l~------~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 242 LL------MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred HH------HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 22 222222222223333344444433334444445555566667777999999999999999999998888888
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccC-------hhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFP-------LRLRAQASALGAVGSRVSSGAIAM 443 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 443 (514)
..++.+... .+ ....+......+.......++.+++++|... .+..|...|...++.-+|.+++..
T Consensus 316 ~~~~~f~~~----~~---~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 316 YLLLYFTPA----GS---VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred HHHHHhhcC----cc---hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 877766541 11 2222222233334444556788888888753 233488889999999999999999
Q ss_pred HHHHHHhhhhcC
Q 010273 444 SFLSVSHAITVG 455 (514)
Q Consensus 444 ~~~~~~~~~g~~ 455 (514)
+.|+..+..||.
T Consensus 389 ~~g~~L~~~Gyv 400 (467)
T COG2211 389 IPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHcCCC
Confidence 999998877754
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=164.51 Aligned_cols=394 Identities=15% Similarity=0.168 Sum_probs=230.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhcchh-Hhhhhh-ccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhh-HHHHHHHHHHH
Q 010273 45 LACAFFASLNSVLLGYDVGVMSGA-IIFIKE-DLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGR-KWTIALAAIVF 121 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~ 121 (514)
|..+.++.+.+++.....+++.+. -|++++ |.+.+.+..|++.++..++.++++++.|+...|.+. |+.++.|.++.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 333445555556666666666554 445544 578888999999999999999999999999999996 89999999999
Q ss_pred HHHHHHH-Hhh---h-hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC
Q 010273 122 QAGAAIM-TLA---P-SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL 196 (514)
Q Consensus 122 ~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 196 (514)
.++.++. ++. + ..+.++++|++.|+|.| ......+++++....++|.++++....+..+|.++||.++.++..+
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 9999988 433 3 67889999999999988 5667899999998899999999999999999999999998887765
Q ss_pred CCCccch-----------hhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHh
Q 010273 197 PAHINWR-----------VMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAA 264 (514)
Q Consensus 197 ~~~~~Wr-----------~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (514)
.+. ||+ .+-|+.++..++.++. .+++.|.++- ..|+..+ .
T Consensus 192 g~~-G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~-----~~~~~~~-----------~----------- 243 (488)
T KOG2325|consen 192 GEK-GFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG-----IIDKKKR-----------S----------- 243 (488)
T ss_pred cCC-ceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC-----ccccccc-----------c-----------
Confidence 432 222 3456666666665554 5667776641 0000000 0
Q ss_pred ccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhcccee-eccchHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q 010273 265 GSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDA-TVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIF 343 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+ ++.+.++...+ . +.+.....+.+.+..+........ .....+......+...............+.+++.
T Consensus 244 --~-~~~~~~~~~~~---~--~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls 315 (488)
T KOG2325|consen 244 --V-EEEKSDIEKVK---K--PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILS 315 (488)
T ss_pred --c-hhhccchhhhc---c--CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHH
Confidence 0 00000000000 0 011111111111222222211112 2223333444444445545444444444444443
Q ss_pred HHHH-HHHHhhc---CCchhhhhhhHHHHHHHHHHHHHHHHhcCc-----------------------chhhHHHHHHHH
Q 010273 344 ILIA-IILIDKV---GRKPLLYVSTIGMTICLLSLSLSLTFLGNG-----------------------QLGIALAILSVC 396 (514)
Q Consensus 344 ~~~~-g~l~d~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 396 (514)
..+. .+..-|. .+|+.+..++.....+..+......+...+ ....+..++...
T Consensus 316 ~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i 395 (488)
T KOG2325|consen 316 VILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFI 395 (488)
T ss_pred HHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehh
Confidence 3222 2222332 345555544333333333332222211100 001111111111
Q ss_pred HHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 397 GNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
...+...-.......+.-+|...++.++++.|+.......+..++|..........|++..+.+.++..++........
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111223446667888999999999999999999999999999999888898877666666555555443333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=149.10 Aligned_cols=354 Identities=14% Similarity=0.106 Sum_probs=229.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHHhccccccccch
Q 010273 80 EVQQEVLVGILSIISLFGSLAGGKTSDVLGR-KWTIALAAIVFQAGAAIMTLAPS--F-AVLIIGRLLAGVGIGFGVMIA 155 (514)
Q Consensus 80 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~~~~~~~~~~ 155 (514)
.+..+...++..+..++-.|+.|.++|+.|+ |+.+-....+..+++++..++++ + +..++.-.+..++.......-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 3567888899999999999999999999995 55666666666777777777755 4 444556677888888888899
Q ss_pred hhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC---------------CCccchhhHhhchHHHHHHHH-H
Q 010273 156 PLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP---------------AHINWRVMLGVGILPSVFIAL-A 219 (514)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~---------------~~~~Wr~~f~~~~~~~~~~~~-~ 219 (514)
.+++.+..++++-++..++-.....+|..+.-+......... +...=|..+.+.++-.++..+ .
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 999999999988777766665555566554433321110011 234566677776555555444 3
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQ 299 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
++..++.++- +.... ..+ ...-++.+.++++..+. +.+..+.+.
T Consensus 217 ~~~v~~~~~~---~~~~~--------------------~~l-------~~g~k~L~~t~k~i~~~------~~i~~FLiA 260 (438)
T COG2270 217 ILNVHDAEKI---SSPPP--------------------TAL-------RNGFKELKSTFKEIRGR------KNLVLFLIA 260 (438)
T ss_pred Hhcccccccc---cccch--------------------HHH-------HHHHHHHHHHHHHHhcc------cchHHHHHH
Confidence 5555555420 00000 000 00112223334443331 223333344
Q ss_pred HHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHH
Q 010273 300 CFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLT 379 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 379 (514)
.+...-+.+.+......|-....+.+.....+..+...+.+++++++.|++.||+|.|+++..+.++..+.++...+...
T Consensus 261 ~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~ 340 (438)
T COG2270 261 RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG 340 (438)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence 44444555666667777777555666677778888889999999999999999999999888887776665554443322
Q ss_pred HhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-cEe
Q 010273 380 FLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVG-GTF 458 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~-~~~ 458 (514)
...++....+.+.+..+.....-++..+.+|+++.+..+|+++..++.....+|...+.+.+-.|.. ..+
T Consensus 341 ---------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 341 ---------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred ---------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 1222223333445555666778889999999999999999999999999999999999998876643 334
Q ss_pred hhhHHHHHHHHHHhhhccccC
Q 010273 459 FVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~ 479 (514)
..+.++..++.+. ....|..
T Consensus 412 ~~i~vll~iGl~~-L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLL-LLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhh-EEeecCC
Confidence 4444444444444 3334443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=162.51 Aligned_cols=305 Identities=14% Similarity=0.142 Sum_probs=216.4
Q ss_pred HHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 010273 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI 127 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 127 (514)
+.+.++..+..++....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|.+++++++++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 44555566666667777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh--------------------h-----------------------------h--H-HHHHHHHHHHhccccccccch
Q 010273 128 MTLA--------------------P-----------------------------S--F-AVLIIGRLLAGVGIGFGVMIA 155 (514)
Q Consensus 128 ~~~~--------------------~-----------------------------~--~-~~~~~~r~l~G~~~~~~~~~~ 155 (514)
+++= + + + ..++++.++.|+|....++.+
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 9871 0 0 2 266778999999999999999
Q ss_pred hhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc----------------cchhhHhhchHHHHHHHHH
Q 010273 156 PLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI----------------NWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~----------------~Wr~~f~~~~~~~~~~~~~ 219 (514)
.+|+-|...+++-+..+|+......+|.++|.++++++..+.... -|...|++.+.+.++..+.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876432111 2667788888888888888
Q ss_pred HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhC-CCHHHHHHHHHHHHH
Q 010273 220 LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIIN-PSPAVRRMLITGCGI 298 (514)
Q Consensus 220 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 298 (514)
++++|...+- ..+..++++. +..+.+.. ...+........+++.+ .++.++++.+....+
T Consensus 339 ~f~fPk~lp~---~~~~~~~~~~---------------~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l 399 (735)
T KOG3626|consen 339 LFFFPKELPK---SQKRKRARDL---------------HVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVL 399 (735)
T ss_pred HHhCcccCcc---ccccchhhhh---------------cccccccc-cccCCcchhhhHHHHHHHHHHHhcCchHHHHHH
Confidence 8888865430 0000000000 00000000 00011111111222211 023566788888888
Q ss_pred HHHhhhccceeeccchHHHhhhcCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGAGIKGNNELLAAT-VAVGFTKTIFILIAIILIDKVGR--KPLLYVSTIGMTICL 371 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~--r~~~~~~~~~~~~~~ 371 (514)
...+....+.+..+|+|.|++.....+...+..+. .....+..+|.+++|++..|+.. |......++...+..
T Consensus 400 ~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 400 ASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 88888888889999999999976655554444444 43444556788999999999854 444444444433333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-19 Score=172.20 Aligned_cols=383 Identities=13% Similarity=0.089 Sum_probs=3.0
Q ss_pred hhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---
Q 010273 55 SVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--- 131 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--- 131 (514)
.+......+.....+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-+++-.|.++++++++++++=
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 33445566677778889999999999999999999999999999999999999888899999999999999988750
Q ss_pred ----------------------h-------------------------hHHHHHHHHHHHhccccccccchhhhhhhccc
Q 010273 132 ----------------------P-------------------------SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISP 164 (514)
Q Consensus 132 ----------------------~-------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 164 (514)
. -+..+++++++.|+|....++.+.+|+-|..+
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 0 13577889999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHhhhcccCCC---------------C----ccchhhHhhchHHHHHHHHHHhhccC
Q 010273 165 SIARGSLTSFPEIFINLGILLGYISNYAFSRLPA---------------H----INWRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~---------------~----~~Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
+++-+..+|++.+...+|.++|.++++.+..+.. + ..|...|++.+...++..+..+++|+
T Consensus 172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 172 KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999987654210 0 12666677777777777777777775
Q ss_pred ChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhhh
Q 010273 226 SPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINP-SPAVRRMLITGCGIQCFQQI 304 (514)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 304 (514)
.-+- ..+.++.++. .+.+.++.......+.+..+......+++.+. ++.++++.+....+......
T Consensus 252 ~lp~---~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~ 318 (539)
T PF03137_consen 252 KLPG---TSERQEEKES----------SERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCC---cccccchhhh----------hhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 5321 1000000000 00000000000000000001111223333221 34667888888888888888
Q ss_pred ccceeeccchHHHhhhcCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHHHHHHHHHH-
Q 010273 305 TGIDATVYYSPTIFKGAGIKGNNELLAA-TVAVGFTKTIFILIAIILIDKVGR--KPLLYVSTIGMTICLLSLSLSLTF- 380 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~--r~~~~~~~~~~~~~~~~~~~~~~~- 380 (514)
....++.+|.|.|++.....++..+..+ ......+..+|.+++|++.+|++- |+.+....+...+..+++......
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 8888999999999997655544443333 343444677899999999999853 444443333333333221110000
Q ss_pred ------------h-------c--C----------------------cc-hhhHHHHHHH-HHHHhhhccccccccceeee
Q 010273 381 ------------L-------G--N----------------------GQ-LGIALAILSV-CGNVAFFSVGIGPVCWVLSS 415 (514)
Q Consensus 381 ------------~-------~--~----------------------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 415 (514)
. . + .. ......++.. +....+......|.. ...-
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~L 477 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITL 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeee
Confidence 0 0 0 00 0111112222 222222223333433 4556
Q ss_pred eccChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 010273 416 EIFPLRLRAQASALGAVGSR-VSSGAIAMSFLSVSHA 451 (514)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 451 (514)
..+|++.|+.|.|+...+.+ +|.+-+|.++|.+.|.
T Consensus 478 R~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 478 RCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------
T ss_pred ccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 77899999999999876654 4667799999999886
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=155.16 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=137.3
Q ss_pred chhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Q 010273 66 SGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI---MTLAPSFAVLIIGR 141 (514)
Q Consensus 66 ~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r 141 (514)
....|. +++++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|
T Consensus 270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 334554 55778999888888888899999999999999999999999988887654443332 22335677788899
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
++.|++.+........++.|.+|++.|++++++......++..++|.+.+.+.+ ...+|+.++++..+++++..+..+
T Consensus 350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~--~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE--STQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHHHH
Confidence 999887776767778888999999999999997544445555667777766432 123578777776666676666677
Q ss_pred hccCChhHHHHc-----CCHHHHHHHHHHhcc
Q 010273 222 VIPESPRWLVMQ-----GRIDEARLVLSKTNE 248 (514)
Q Consensus 222 ~~~e~~~~~~~~-----~~~~~~~~~~~~~~~ 248 (514)
++||+|+|+.++ +|.||+++.+++.++
T Consensus 428 ~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 428 TMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 789999998755 889999999988763
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-14 Score=126.85 Aligned_cols=333 Identities=13% Similarity=0.081 Sum_probs=204.7
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh-----hHH-HHHHHHHHHHHHHHHHHhh-----h-------h
Q 010273 72 IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG-----RKW-TIALAAIVFQAGAAIMTLA-----P-------S 133 (514)
Q Consensus 72 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~-~~~~~~~~~~~~~~~~~~~-----~-------~ 133 (514)
+..|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||. .+..|.++...+..+.+++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 457899998889998888877654 6899999999998 774 5555666666665555543 2 1
Q ss_pred H--H--HHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh-
Q 010273 134 F--A--VLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV- 208 (514)
Q Consensus 134 ~--~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~- 208 (514)
. + ...+...+.|+|.+.......+++.|..|+++|+++.++.....-+|.+++..+.+.+.+ +...=|..-.+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~--~~s~~rL~~v~~ 162 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD--PFSPERLIQVIQ 162 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc--ccCHHHHHHHHH
Confidence 2 2 334456778999999999999999999999999999999999999999999888877432 22222332233
Q ss_pred -chHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 209 -GILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 209 -~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
..+..++..++..+=.|.+..... ...++++..-...++++...++.
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~~~--------------------------------~~~~~~~~~f~~a~~~~~~~~~a 210 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSRRA--------------------------------AAAERPRPPFREAWRQVWASPQA 210 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccc--------------------------------cCCCCCCccHHHHHHHHHhCCCh
Confidence 222222222333333333210000 00112233344556666543332
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhhhhhHH
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILID-KVGRKPLLYVSTIG 366 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~~~~~~ 366 (514)
.+...+.. +..+ +++.--..+-.|-.+..+.+..+...++...+.+.+++....|++.. |.++++...+++..
T Consensus 211 ~~f~~fl~--l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 211 RRFFVFLF--LGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL 284 (403)
T ss_pred hHHHHHHH--HHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 22222221 1111 11111122333444555666667777788788999999999998877 56667777777777
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 367 MTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
..+++.++.......+ ........+.+-+..+.+. ....+.+.++.+++..|..+|.....+.+...++..+.|
T Consensus 285 ~~~~f~lii~a~~~~~--~~~~~~~~~l~G~g~G~f~----vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 285 GALAFALIILAGPLGS--PWLFRPGVFLLGLGNGLFT----VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHHHHHHHhccc--chHHHHHHHHHHHhhhHHH----HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655543322 1111111122211222222 122244556667788999999999999999999999999
Q ss_pred HHHhh
Q 010273 447 SVSHA 451 (514)
Q Consensus 447 ~~~~~ 451 (514)
.+.|.
T Consensus 359 ~~~D~ 363 (403)
T PF03209_consen 359 ALRDL 363 (403)
T ss_pred HHHHH
Confidence 88873
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.4e-14 Score=132.47 Aligned_cols=359 Identities=14% Similarity=0.134 Sum_probs=221.3
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChh-HHHHHHHH----HHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEV-QQEVLVGI----LSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA 123 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~~~~s~----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 123 (514)
....+-.+..++......+..+...+.++-+.. ..+..... ..+...+.++..|.++||+|||..+....+...+
T Consensus 25 ~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 25 PLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 333444444444555555666666665554322 22333333 3677788999999999999999999999999988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhccc--cccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc
Q 010273 124 GAAIMTLAPSFAVLIIGRLLAGVGI--GFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN 201 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 201 (514)
..+...+.. +|.++ +.|+.. +.......++++|....++|...+++.......+..++|.+++... ...|
T Consensus 105 ~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~---~~~~ 176 (463)
T KOG2816|consen 105 PALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV---KFLG 176 (463)
T ss_pred hHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhcC
Confidence 888877766 44333 444333 3356678899999999999999999999999999999999998843 3467
Q ss_pred chhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Q 010273 202 WRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWRE 280 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
.-..|.+..+..++..+. .+++||+-. .++.++ .+.+ ...............++.
T Consensus 177 ~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~ 232 (463)
T KOG2816|consen 177 IALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD-------------------ATLR-ELTPGSLDSSHVADAFQS 232 (463)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccccC----cccccc-------------------cccc-ccCCCcccchhhhhhhhh
Confidence 777888877777766655 667888753 000000 0000 000000011111111221
Q ss_pred hhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCchh
Q 010273 281 IINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAI-ILIDKVGRKPL 359 (514)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~r~~ 359 (514)
..+.. .++..+..+....+..........-..+.|++.....+....+......+....++.++.. .+...++.|+.
T Consensus 233 ~~~~~--~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~ 310 (463)
T KOG2816|consen 233 LTKVG--PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL 310 (463)
T ss_pred hcccC--CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 11100 0111111111111111111111111224556665666676777566666677777776666 77778888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHH
Q 010273 360 LYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSG 439 (514)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 439 (514)
...+.....+....+.+.... +...... ....+.....|...+..+...+++++|+++++...+..+.+.
T Consensus 311 i~lGl~~~~~~~~~~af~~~~--------w~~~~~~--v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~ 380 (463)
T KOG2816|consen 311 ISLGLLSEFLQLLLFAFATET--------WMMFAAG--VVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV 380 (463)
T ss_pred hhHHHHHHHHHHHHHHHhccc--------hhhhHHH--HHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence 888877777777777666542 1111111 111333344567778888888999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 010273 440 AIAMSFLSVSHA 451 (514)
Q Consensus 440 ~~~~~~~~~~~~ 451 (514)
++|.+++.+...
T Consensus 381 ~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 381 VSPALYGNIFAL 392 (463)
T ss_pred hhHHHHHHHHHH
Confidence 999999988653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-15 Score=122.28 Aligned_cols=136 Identities=26% Similarity=0.397 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccc
Q 010273 87 VGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166 (514)
Q Consensus 87 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 166 (514)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccC
Q 010273 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPE 225 (514)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e 225 (514)
+|++..++......+|..+++.+++.+ .+..+|++.|++.++..++..+. +++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVL---AQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHH---hcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999884 45678999999877666665555 444454
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=134.61 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=128.0
Q ss_pred hHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 010273 68 AII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGV 146 (514)
Q Consensus 68 ~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 146 (514)
..| .+++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+.++.+.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444 5677899999999999888888888899999999999999998888777666665555667788888889999888
Q ss_pred cccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccC
Q 010273 147 GIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
+.+...+....+..|.+|+ +|++++++++....+|..+++.+++.+ .+..+|+..|++.+++.++..+..+++||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIV---AEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8777777777888898875 699999999999999999999999984 44579999999888888777777777665
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=140.09 Aligned_cols=152 Identities=11% Similarity=-0.012 Sum_probs=127.8
Q ss_pred hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccc
Q 010273 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGV 152 (514)
Q Consensus 73 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 152 (514)
..+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...
T Consensus 254 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 254 FATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 33446777889999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cchhhhhhhccccccccccchh-hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccCCh
Q 010273 153 MIAPLYIAEISPSIARGSLTSF-PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPESP 227 (514)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~ 227 (514)
+....++.+.+|++.|+...+. ++....+|.++++.+.+.+ .+..||+..|.+.++..++..++ ++.+++++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l---~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL---YDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH---HHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7888899999999999887765 6777889999999999984 44579999999877666655544 44444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=138.40 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhccccccccch
Q 010273 80 EVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP----SFAVLIIGRLLAGVGIGFGVMIA 155 (514)
Q Consensus 80 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~ 155 (514)
.++.+...++..++..++.++.|+++||+|+|+++..+.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999999999999999999999999877776632 34667788999999999888888
Q ss_pred hhhhhhccccccccccchhhH-HHHHHHHHHHHHHhhhcccCCCC---ccchhhHhhchHHHHHHHHH-HhhccCCh
Q 010273 156 PLYIAEISPSIARGSLTSFPE-IFINLGILLGYISNYAFSRLPAH---INWRVMLGVGILPSVFIALA-LFVIPESP 227 (514)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~---~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~ 227 (514)
..++.|++|+++|++++++.+ ...++|..+||++++.+.+.... .||++.|.+.+++.++..++ +++++|+.
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999997 67889999999999986543322 57999999877666655554 66677764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=133.94 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=125.1
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHh
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSF--AVLIIGRLLAG 145 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G 145 (514)
..+...++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++.+++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999999999999999988888777643 33456678888
Q ss_pred ccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 146 VGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
++.+...+....++.|.+|+++|++++++......+|..++|.+.+. +.++.||++.|++.+++.++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~---l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASH---ALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH---HHhhhchhhHHHHHHHHHHHh
Confidence 88888888888899999999999999999999999999999999998 445679999998877666554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=140.11 Aligned_cols=140 Identities=15% Similarity=0.086 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcc
Q 010273 84 EVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS 163 (514)
Q Consensus 84 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 163 (514)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455667889999999999999999999999999999999999999998888888999999988888899999999999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCCh
Q 010273 164 PSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227 (514)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 227 (514)
|.++|++++|+..+...+|.++||++++.+.. .+...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999987433 2456778887777777777777789875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=127.65 Aligned_cols=162 Identities=23% Similarity=0.386 Sum_probs=142.5
Q ss_pred hhhhhhcchhHhhhhhc-cccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHhhhhHHH
Q 010273 59 GYDVGVMSGAIIFIKED-LKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKW-TIALAAIVFQAGAAIMTLAPSFAV 136 (514)
Q Consensus 59 ~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~ 136 (514)
...........|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33444455556655555 4999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHH
Q 010273 137 LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 137 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
+.+..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+. +.+..+|++.|++.++..++.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~---l~~~~~~~~~~~~~~~~~~i~ 344 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL---LLDTGGYGGVFLILAALALLA 344 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 444679999999988888777
Q ss_pred HHHHhhc
Q 010273 217 ALALFVI 223 (514)
Q Consensus 217 ~~~~~~~ 223 (514)
.+..+++
T Consensus 345 ~i~~~~~ 351 (352)
T cd06174 345 ALLLLLL 351 (352)
T ss_pred HHHheec
Confidence 6665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=128.69 Aligned_cols=358 Identities=15% Similarity=0.098 Sum_probs=198.8
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hhHHHHHHHHHHHHHHHHHHHhh----hhHH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-----GRKWTIALAAIVFQAGAAIMTLA----PSFA 135 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~~~~~~~~~~~~~~~~~~~----~~~~ 135 (514)
..+..|.+++++|+++++...+.+...+...+ .++.|.++|.+ .||+.++++.++.+++.+..+.. .+..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 34567789999999999999998888888766 67789999986 36677777777776666655553 3466
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccc--cccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISP--SIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
...+.-++..+|......++-+++.|... +++|+...+.......+|.+++..++|. +.+..++|+.|.+.++..
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~---l~~~~~~~~~f~i~~~~~ 164 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGP---LLDSFGPQGVFLISAALP 164 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhh---hhhcCCCeEEehHHHHHH
Confidence 66677788888888888999999999874 3346788888888899999999999888 445678999998877666
Q ss_pred HHHHHHHh-hccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHH
Q 010273 214 VFIALALF-VIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRML 292 (514)
Q Consensus 214 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
++..+..+ +.+|.++ .+.++.... .++ + ........++.....++.++.+..++...
T Consensus 165 ~l~~~~~~~~~~e~~~-----~~~~~~~~~----~~~------~-------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 222 (433)
T PF03092_consen 165 LLMLIVALFLLEERKV-----RPADEVFSF----GKE------E-------VPCLFGSFREQLSELWRALQQRAIWQPIL 222 (433)
T ss_pred HHHHHHHHHhhhhccc-----cccchhhcc----ccc------c-------cchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 65555544 4444211 000000000 000 0 00000001111222223333122222222
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
++.+ +..+..........++...... --+.++...+.......++.+++..+......+..-|+++....++.++..+
T Consensus 223 ~~~~-~~~~~~~~~~a~~fy~~~~~~~-gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l 300 (433)
T PF03092_consen 223 FFIF-FFNLPPSISSASSFYFQTDALG-GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASL 300 (433)
T ss_pred HHHH-HHHhccCCCCccEEEEEecccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 1111 1111111111112222222221 1123444445555555566666666665554445555555544443332222
Q ss_pred HHHHHHHHhc----CcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 373 SLSLSLTFLG----NGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSV 448 (514)
Q Consensus 373 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 448 (514)
.-.......+ .+.......-- ............|.. ...+|+.|+..-|+.+++...+.++|..++..+...+
T Consensus 301 ~~~~lv~~~n~~~Gi~d~~f~lgd~--~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 301 FDLLLVTRWNLDLGIPDQWFALGDT--ILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred ccEEEEEEEeeeeCcCCeEEEEEhH--HHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000000 00111111111 111111112222332 5678899999999999999999999999999998888
Q ss_pred Hhhhh
Q 010273 449 SHAIT 453 (514)
Q Consensus 449 ~~~~g 453 (514)
.+..+
T Consensus 378 ~~~~~ 382 (433)
T PF03092_consen 378 MELFG 382 (433)
T ss_pred HHHcC
Confidence 77665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-12 Score=112.88 Aligned_cols=245 Identities=14% Similarity=0.078 Sum_probs=150.0
Q ss_pred hcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010273 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLL 143 (514)
Q Consensus 64 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 143 (514)
..+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-+...++.+++++. -..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHH
Confidence 4455555666789999999999999999999999999999999999999999999999999864 456899999999999
Q ss_pred Hhccccccccchhhhh-hhcccc----ccccccchhhH-HHHHHHHHHHHHHhhhcccCCCCc--cchhhHhhchHHHHH
Q 010273 144 AGVGIGFGVMIAPLYI-AEISPS----IARGSLTSFPE-IFINLGILLGYISNYAFSRLPAHI--NWRVMLGVGILPSVF 215 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i-~~~~~~----~~r~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~--~Wr~~f~~~~~~~~~ 215 (514)
.|++.+..+.+--++. .|.-.. +..+..++... ..+++-.+.+.+++-.+ .+.. |-..+|.....+.++
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l---~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL---ADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH---HHHhCCCCcchHHHHHHHHHH
Confidence 9999998888776654 443211 11122222111 11222223333333332 2222 336788887766665
Q ss_pred HHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHH
Q 010273 216 IALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLIT 294 (514)
Q Consensus 216 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
..++ ...-+|+..- .+ ...+..+..+..++.+.++ ++.+.
T Consensus 208 ~~~~I~~~W~ENyg~------~~----------------------------~~~~~~~~~~~a~~~i~~d-----~ril~ 248 (354)
T PF05631_consen 208 AAVLILKTWPENYGD------TS----------------------------SSSSLSGSFREAWRAILSD-----PRILL 248 (354)
T ss_pred HHHHHHhcccccCCC------cc----------------------------cccchHHHHHHHHHHHHcC-----chhHH
Confidence 5554 3334555420 00 0000111122233333332 22233
Q ss_pred HHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 295 GCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
.......+....+.....|.|..-.+. ...-.|+++..+.++.++|+.+..++..+-
T Consensus 249 LG~~qslFE~smy~FVflWtPaL~~~~---~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 249 LGLIQSLFEGSMYLFVFLWTPALDPDD---EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHHHHheeeeeceecCCC---CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444555555566667888765221 222346667767788888888887665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-13 Score=127.50 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=127.4
Q ss_pred hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccc
Q 010273 71 FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGF 150 (514)
Q Consensus 71 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~ 150 (514)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+..++..+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999998888778888899999999999999999888887777766667778888888899999999888
Q ss_pred cccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccC
Q 010273 151 GVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
..+....++.|..|+ +++++++++.....+|..++|.+++.+ .+..||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGIL---AERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888889998875 567999999999999999999999984 34568999999988877777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-13 Score=128.93 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=127.4
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVG 147 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 147 (514)
..+...++.|.+ +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344333455653 456677888899999999999999999999999999999999988888888888888999999999
Q ss_pred ccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCC
Q 010273 148 IGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPES 226 (514)
Q Consensus 148 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~ 226 (514)
.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+ .+..||++.|++.++..++..+..+++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV---ASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988888888888999999999999999999999999888888874 345689999999877777766665555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=124.60 Aligned_cols=184 Identities=10% Similarity=0.044 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHH
Q 010273 287 AVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIG 366 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~ 366 (514)
.+|...++...+.....+..--.+..-.|.+.++.+ .+..+.+.+...+.+..-++..+.|.++||.+.|..+..+.++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 445555555555555554444455566677777766 5566777777778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHH-
Q 010273 367 MTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSF- 445 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~- 445 (514)
.++..+++++... ...+.....+.+.+...-.|.+...+..-+|+++||+..++.|+..++|+++.|.+.
T Consensus 104 sai~nil~Gfs~s---------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 104 SAIVNILFGFSPS---------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred HHHHHHHHhhhhH---------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHH
Confidence 9999999988764 445555666667777666777888889999999999999999999999999999999
Q ss_pred -HHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 446 -LSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 446 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+.+.++.+|+..|++-++++++..++.++..+++.
T Consensus 175 la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 175 LAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88888889999999999999998888877766543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=124.99 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=129.0
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLA 144 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 144 (514)
+....|...+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.++++
T Consensus 224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 33344544467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhhhccccccccccchhhH-HHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHH
Q 010273 145 GVGIGFGVMIAPLYIAEISPSIARGSLTSFPE-IFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALAL 220 (514)
Q Consensus 145 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~ 220 (514)
|+..+...+....++.+. |+++|++.+++++ ...++|..+|+.++|.+ .++.|+ ..|++.++..++..++.
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l---~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI---YPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999986 57789999999999994 445676 55666555555544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=127.29 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=129.4
Q ss_pred hhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 010273 67 GAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGV 146 (514)
Q Consensus 67 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 146 (514)
...|.+.++.|.++.+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++.|+
T Consensus 241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34566667789999999999999999999999999999999999999998887777777777777888888888888999
Q ss_pred cccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC-ccchhhHhhchHHHHHHHHHHhhccC
Q 010273 147 GIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH-INWRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~-~~Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
+.++..+...+++.|.+|+++|++++++......+|..+||.+++.+. ++ .+|...++......++..+..+++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL---ALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh---ccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888788888999999999999999999999999999999999999853 33 35666676666555555555444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=125.56 Aligned_cols=172 Identities=12% Similarity=0.058 Sum_probs=121.1
Q ss_pred HHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 010273 298 IQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLS 377 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 377 (514)
...++...+......+.|.++++..+.+....++......+..+++.++.|+++||+|||+.+..+.++..++.+.+.+.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 34444444555666678888876555566667777777788899999999999999999999888877777666655543
Q ss_pred HHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcE
Q 010273 378 LTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGT 457 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 457 (514)
... +..++... ..+.......+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+|+..
T Consensus 94 ~~~--------~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~ 163 (395)
T PRK10054 94 NNV--------TLVVLFFA-LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLP 163 (395)
T ss_pred hHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcH
Confidence 321 11111111 12222223345566778899999999999999999999999999999998875 688888
Q ss_pred ehhhHHHHHHHHHHhhhccccC
Q 010273 458 FFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
|.+.+++.++..+...+..++.
T Consensus 164 f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 164 FWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 8887777776655554444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=128.01 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 291 MLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
..++...+..+..+........+.|.+.++.+.+. ...++......++..++.++.|++.||+|||+.+.++.++..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence 33333444444444434455667888888876654 45566666788999999999999999999999998888888877
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
.++....... +. +.......++......+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+
T Consensus 102 ~~~~~~~~~~--------~~-l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 102 NILFGFSSSL--------WA-FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHHhHH--------HH-HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666554331 11 11111222222223345666788899999999999999999999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 451 AITVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
..||++.|.+.+++.++..+...+.+++
T Consensus 173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999998888777666554444444444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=127.45 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=122.4
Q ss_pred chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh--hhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL--GRKWTIA--LAAIVFQAGAAIMTLAPSFAVLIIGR 141 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r 141 (514)
...+|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+... .+.++.+++.+++.+.++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445555677899999999999999999999999999999983 3443333 34444455666677788999999999
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc-cchhhHhhchHHHHHHHH
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI-NWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~Wr~~f~~~~~~~~~~~~ 218 (514)
++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+ .+.. +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l---~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL---VDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee---ehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 3444 699999997776655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=125.92 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=126.0
Q ss_pred hhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 010273 67 GAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGV 146 (514)
Q Consensus 67 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 146 (514)
...|...++.+.+. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 237 TFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444445556553 4566777888889999999999999999999999999999998888888888888899999999
Q ss_pred cccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 147 GIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
+.+...+...+.+.|.+|+++|+++.++++....+|..++|.+.+. +.++.||++.|.+.+++.++..+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~---l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM---LATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9998888888889999999999999999999999999999999998 44567999999998777766655543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=124.17 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHH--HH------HHHHHHHHHHHHHHHhh
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKW--TI------ALAAIVFQAGAAIMTLA 131 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~~------~~~~~~~~~~~~~~~~~ 131 (514)
.........| .+.+++|.++.+.+++.+...++..++.++.|++.||+|||+ .. ..+.++.++........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV 309 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334444455 456778999999999999999999999999999999999996 11 11111122222222223
Q ss_pred hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhhch
Q 010273 132 PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WRVMLGVGI 210 (514)
Q Consensus 132 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~~~ 210 (514)
++.+..+...++.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+. +.+..| |++.|++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~---l~~~~g~~~~~~~~~~ 385 (399)
T TIGR00893 310 NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA---IAATTGSFAGALMVVA 385 (399)
T ss_pred hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhh---hccCCCchhHHHHHHH
Confidence 345555555555555555 788999999999999999999999999999999999999998 445567 999998877
Q ss_pred HHHHHHHHHH
Q 010273 211 LPSVFIALAL 220 (514)
Q Consensus 211 ~~~~~~~~~~ 220 (514)
+..++..+..
T Consensus 386 ~~~~~~~~~~ 395 (399)
T TIGR00893 386 ALALIGALSY 395 (399)
T ss_pred HHHHHHHHHH
Confidence 7666655543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=126.74 Aligned_cols=162 Identities=20% Similarity=0.152 Sum_probs=120.5
Q ss_pred eeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchh
Q 010273 308 DATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLG 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (514)
.....+.|.+.++.+.+ ....++......++.+++.++.|+++||+|||+.+..+.++..++.++......
T Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 104 (398)
T TIGR00895 34 AAMGFAAPAISAEWGLD-PVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN-------- 104 (398)
T ss_pred HHHHhhHHHHhhccCCC-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc--------
Confidence 34445677777776654 445566666678889999999999999999999998888777776665544321
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHH
Q 010273 388 IALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 467 (514)
...++......++......+...++..|.+|++.|+++.|+.+....+|..+++.+.+.+.+..+|+..+++.+++..+
T Consensus 105 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 183 (398)
T TIGR00895 105 -VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL 183 (398)
T ss_pred -hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence 1222223333444444556777788999999999999999999999999999999999999989999888888766666
Q ss_pred HHHHhhhccccC
Q 010273 468 SVAFVYKCVPET 479 (514)
Q Consensus 468 ~~~~~~~~~~~~ 479 (514)
..++.....++.
T Consensus 184 ~~~~~~~~~~~~ 195 (398)
T TIGR00895 184 LLLLLMRFLPES 195 (398)
T ss_pred HHHHHHHhCCCC
Confidence 666655566654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=126.08 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhc
Q 010273 83 QEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEI 162 (514)
Q Consensus 83 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 162 (514)
.+.+.+++.++..++.++.|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 56667777888889999999999999999999999998888888888888889999999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 163 SPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
.|+++|++.+++......+|..+||.+++. +.+..||++.|++.++..++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~---l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAA---ISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHH---HHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 44567999999998877776665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=114.72 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=132.4
Q ss_pred hcchhHhhhhhc-cccChhHHH-HHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010273 64 VMSGAIIFIKED-LKITEVQQE-VLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGR 141 (514)
Q Consensus 64 ~~~~~~~~i~~~-~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 141 (514)
.-+...|++.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++...+-+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 334456666665 899988865 566677778888999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
++-|++.+. ..+-.+++-...|+++-.++.+...++.-+|..++.++|-.+.. .+..+.+...++......+..++.+
T Consensus 102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs-~~~~sy~~L~~isl~~~~~a~~~~~ 179 (412)
T PF01770_consen 102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS-FGGVSYFQLNYISLASVSLALLIAL 179 (412)
T ss_pred HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999884 56778888888899988899999988888888888888876543 2334666777776666666667778
Q ss_pred hccCChh
Q 010273 222 VIPESPR 228 (514)
Q Consensus 222 ~~~e~~~ 228 (514)
++|..++
T Consensus 180 fLP~~~~ 186 (412)
T PF01770_consen 180 FLPMPKR 186 (412)
T ss_pred HcCCCCc
Confidence 8887665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-12 Score=123.83 Aligned_cols=163 Identities=17% Similarity=0.056 Sum_probs=120.7
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hH-H-HHHHH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SF-A-VLIIG 140 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~ 140 (514)
.....|.+.+++|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33456788888998887777777788888999999999999999999999999999999888776442 11 1 22233
Q ss_pred HHHHhccccc-cccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc---cCCCCccchhhHhhchHHHHHH
Q 010273 141 RLLAGVGIGF-GVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS---RLPAHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 141 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~---~~~~~~~Wr~~f~~~~~~~~~~ 216 (514)
.++.+.+.+. ..|....++.|.+|+++|++++++......+|..+++.+.+.+. .+.+..+|++.|++.++..++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 3444444433 33677899999999999999999999999999988866655432 1334678998898877666555
Q ss_pred HHH-HhhccCCh
Q 010273 217 ALA-LFVIPESP 227 (514)
Q Consensus 217 ~~~-~~~~~e~~ 227 (514)
.+. +++.||++
T Consensus 450 ~~~~~~~~~e~~ 461 (479)
T PRK10077 450 ALFMWKFVPETK 461 (479)
T ss_pred HHHHHhccccCC
Confidence 554 45567765
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=121.97 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=122.9
Q ss_pred hhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 010273 67 GAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGV 146 (514)
Q Consensus 67 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 146 (514)
..+|...++.|.+.++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346666667899999999999999999999999999999999999999988888877665543 2 2334456778888
Q ss_pred cccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhc
Q 010273 147 GIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVI 223 (514)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 223 (514)
+.....|...+.+.|..|+++++.+.+.+....++|..+||.+++. +.++.+|++.|.+.+.+.++..+..+..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~---l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM---LMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 7777889999999999998888888888888899999999999998 4456799999999777776665555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=122.41 Aligned_cols=180 Identities=13% Similarity=0.000 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 010273 292 LITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICL 371 (514)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 371 (514)
.+....+.++....-.....+..|.+.++.+ .+....++......++..++.+..|++.||+|||+.+..+.++..++.
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLG-LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3333444444444444455555665545554 445566666777888999999999999999999999988888888777
Q ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 010273 372 LSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH- 450 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~- 450 (514)
.+..+..+ ...+...-.+.+.......|....++.|.+|+++|+.+.|+.+....+|..+++.+.+.+.+
T Consensus 88 ~~~~~~~~---------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 88 TATMFATG---------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHhcC---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76655432 22222223334444444456666778999999999999999999999999999999988764
Q ss_pred -----hhhcCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 451 -----AITVGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 451 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
..||++.|++.++..++..++.+++++|+++
T Consensus 159 ~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 159 DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3689999998887777766666666776653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=124.72 Aligned_cols=158 Identities=12% Similarity=0.048 Sum_probs=116.4
Q ss_pred hcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHH
Q 010273 64 VMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI--MTLAPSFAVLIIG 140 (514)
Q Consensus 64 ~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 140 (514)
......| ++++++|+|..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.
T Consensus 276 ~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 276 GIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556 577889999999999999999999999999999999999998777665544443322 2334566677788
Q ss_pred HHHHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccC---------CCCccchhhHhhch
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRL---------PAHINWRVMLGVGI 210 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~---------~~~~~Wr~~f~~~~ 210 (514)
+++.|++...........+.|.+|+++|+++.|+.+....+ |..++|.+.|.+.+- ....+|+..|++..
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 88888654333333345677999999999999999988886 778888888885440 00467999998876
Q ss_pred HHHHHHHHHHh
Q 010273 211 LPSVFIALALF 221 (514)
Q Consensus 211 ~~~~~~~~~~~ 221 (514)
+..++..+..+
T Consensus 436 ~~~~~~~~~~~ 446 (467)
T PRK09556 436 IAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=118.73 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=120.1
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHhc
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA-AIMTLAPSFAVLIIGRLLAGV 146 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~ 146 (514)
..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++.. +..+..++. .+....++.+.+++..++.|+
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~ 306 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGI 306 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 445567778999999999999999999999999999999999887544 444444443 344556788888889999999
Q ss_pred cccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHH
Q 010273 147 GIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALAL 220 (514)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~ 220 (514)
+.+...+.....+.+..| ++|+++++++.....+|..+||++++. +.++.|++..|++.+++.++..+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~---~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ---VSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHHHHH
Confidence 887777777788888766 688999999999999999999999999 5567899999999877777665553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-12 Score=120.53 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=127.2
Q ss_pred chhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010273 66 SGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLA 144 (514)
Q Consensus 66 ~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 144 (514)
....| .+++++|++..+.+++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+.+..++.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL 304 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34455 45578899999999999999999999999999999999999999988888777777777777887777788889
Q ss_pred hccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhcc
Q 010273 145 GVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIP 224 (514)
Q Consensus 145 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~ 224 (514)
|++.+..++...++..+..| +++++..+.......+|..++|.+.+.+ .+..||+..+++.+++.++..+....++
T Consensus 305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPI---VAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99888888887877777665 4567778888888999999999999984 4467999999987777666655555554
Q ss_pred C
Q 010273 225 E 225 (514)
Q Consensus 225 e 225 (514)
+
T Consensus 381 ~ 381 (394)
T PRK03699 381 F 381 (394)
T ss_pred H
Confidence 3
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=123.65 Aligned_cols=149 Identities=14% Similarity=0.088 Sum_probs=115.1
Q ss_pred hhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH--HHHHh--hhhHHHH
Q 010273 63 GVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA--AIMTL--APSFAVL 137 (514)
Q Consensus 63 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~~ 137 (514)
.......|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 334445554 457889999999999999999999999999999999999998876555544433 22222 2467777
Q ss_pred HHHHHHHhccccccccchhhhhhhccccccccccchhh-HHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhhchHHHH
Q 010273 138 IIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFP-EIFINLGILLGYISNYAFSRLPAHIN-WRVMLGVGILPSV 214 (514)
Q Consensus 138 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~ 214 (514)
++..++.|++.+...+...+++.|.+|+++|++++++. ..+..+|..++|.+++.+. ++.| |++.++..++..+
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~---~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV---AMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH---HHcCcchhHHHHHHHHHH
Confidence 78888999998888999999999999999999999984 5666788889999999854 3455 8887776554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=124.04 Aligned_cols=162 Identities=12% Similarity=-0.038 Sum_probs=124.3
Q ss_pred hhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----h-----
Q 010273 63 GVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA-----P----- 132 (514)
Q Consensus 63 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~----- 132 (514)
.......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++. +
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 344456677888899999889999999999999999999999999999999999988888887776621 1
Q ss_pred -hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 133 -SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 133 -~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
+...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+ .++.+|++.|++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~---~~~~~~~~~f~~~~~ 457 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM---LESIGVGGVFIFFGG 457 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCccceehhHHH
Confidence 3333333333333333334566777889999999999999999999999999999988873 345689999998777
Q ss_pred HHHHHHHH-HhhccCCh
Q 010273 212 PSVFIALA-LFVIPESP 227 (514)
Q Consensus 212 ~~~~~~~~-~~~~~e~~ 227 (514)
++++..+. .++.||++
T Consensus 458 ~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 458 LNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHheecccCC
Confidence 76666555 44566654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=120.60 Aligned_cols=164 Identities=18% Similarity=0.110 Sum_probs=121.4
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcch
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQL 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
........|.+.++.+.++. ..++......++..++.++.|++.||+|||+.+..+.++..++.+.......
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------- 92 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPAS-IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN------- 92 (385)
T ss_pred HHHhcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 33444456777777766544 5566666688999999999999999999999999888777777666554322
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHH
Q 010273 387 GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 466 (514)
...+.......+.......+...++..|.+|+++|+++.|+.+....+|..+++.+.+.+.+..+|+..+++.+++.+
T Consensus 93 --~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 170 (385)
T TIGR00710 93 --IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGI 170 (385)
T ss_pred --HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 122222233333444444566678889999999999999999999999999999999999988899888888877777
Q ss_pred HHHHHhhhccccCC
Q 010273 467 LSVAFVYKCVPETK 480 (514)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (514)
+..+..++..||.+
T Consensus 171 ~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 171 LLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHhCCCCC
Confidence 76666555556544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=122.83 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=132.3
Q ss_pred hhHhhhhhc-cccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 010273 67 GAIIFIKED-LKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAG 145 (514)
Q Consensus 67 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 145 (514)
...|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345555455 8999999999999999999999999999999988888888888888888888888888888888899999
Q ss_pred ccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH-HHHHHhhcc
Q 010273 146 VGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF-IALALFVIP 224 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~-~~~~~~~~~ 224 (514)
++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+ .+..|++..+++.+...++ ..+.+..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL---GAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH---HHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 988877777888999999999999999999999999999999999984 4456888888776555544 444456666
Q ss_pred CCh
Q 010273 225 ESP 227 (514)
Q Consensus 225 e~~ 227 (514)
+.+
T Consensus 401 ~~~ 403 (417)
T PRK10489 401 ELR 403 (417)
T ss_pred ccc
Confidence 654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=114.09 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=143.1
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
++.+.+..|......+.....+|.+-++.+.+....... ...+.++..++.++...+.||+.||+.++....+..++.+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~l-is~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQL-ITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 344455556666666677778899999988777655544 5558999999999999999999999999999999999988
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
+..+.+++ ..++..=...+.......++..+...++.|+++|+++.++......+...+|.++..++.|.+
T Consensus 94 l~alAp~f---------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 94 LSALAPSF---------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred HHHHhccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 88877663 233333333444444555677788999999999999999999999999999999999999999
Q ss_pred hcCcEehhhHHHHHHHHHHhhhccc
Q 010273 453 TVGGTFFVFSLISALSVAFVYKCVP 477 (514)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (514)
||+.+|+..+++.++..+..+..+|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888888
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=123.23 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=118.9
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
......|.+.++.+.+. ...++......++..++.++.|+++||+|||+.+..+.++..++.++......
T Consensus 13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------- 82 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------- 82 (379)
T ss_pred hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh---------
Confidence 34445676666666544 45666677788999999999999999999999999988888877776665442
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCcEehhhHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAM-SFLSVSHAITVGGTFFVFSLISAL 467 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 467 (514)
...++......+.+.....+...+++.|.+|+++|+.+.|+.+....+|..+++. +.+.+.+..+|+..+++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 2222333333444445556777788999999999999999999999999999994 666666677888888877777766
Q ss_pred HHHHhhhccccCC
Q 010273 468 SVAFVYKCVPETK 480 (514)
Q Consensus 468 ~~~~~~~~~~~~~ 480 (514)
..+......++.+
T Consensus 163 ~~~~~~~~~~~~~ 175 (379)
T TIGR00881 163 VSLICFLLLRDSP 175 (379)
T ss_pred HHHHHheeeCCCc
Confidence 6666555555543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=120.66 Aligned_cols=142 Identities=15% Similarity=0.010 Sum_probs=111.8
Q ss_pred hhHhhh-hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q 010273 67 GAIIFI-KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--PSFAVLIIGRLL 143 (514)
Q Consensus 67 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l 143 (514)
..+|.+ ++++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++.... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 455654 46899999999999999999999999999999999999999998887777665544433 344444455555
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchH
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGIL 211 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~ 211 (514)
.+....+..+....++.|.+|+++|++++++......+|..+||.+++. +.++.||+..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~---l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGAL---IAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHH---HhccCChHHHHHHHHH
Confidence 4443334456677889999999999999999999999999999999998 4456789988766443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=115.33 Aligned_cols=156 Identities=11% Similarity=0.099 Sum_probs=118.8
Q ss_pred hHhhhhhccccChhHHHHHHH-HHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVG-ILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM---TLA-PSFAVLIIGRL 142 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~ 142 (514)
..|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445667789999999999974 5668999999999999999999988877666555544332 232 35555555566
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFV 222 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 222 (514)
++.+..|...+...++..+..+++.+++..++.+...++|..+++.++|.+ .+..||+..|.+.++++++..+...+
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l---~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF---VEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 655555555566788888999999999999999999999988887788874 44569999999988888877766655
Q ss_pred ccCC
Q 010273 223 IPES 226 (514)
Q Consensus 223 ~~e~ 226 (514)
++++
T Consensus 402 ~~~~ 405 (491)
T PRK11010 402 CRQT 405 (491)
T ss_pred HHhc
Confidence 5543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-12 Score=121.61 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=112.9
Q ss_pred HhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHhcc
Q 010273 69 IIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA-IMTLAPSFAVLIIGRLLAGVG 147 (514)
Q Consensus 69 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~ 147 (514)
.+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+.++..+ +....++.+.+.+..++.|+.
T Consensus 262 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (405)
T TIGR00891 262 PTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQML 341 (405)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3356678999999999999999999999999999999999999999888776643332 334456677777777888877
Q ss_pred ccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhh
Q 010273 148 IGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WRVMLGV 208 (514)
Q Consensus 148 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~ 208 (514)
.+...+....++.|.+|+++|++++|+.+....+|..++|++.+.+. ++.| |+..+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~---~~~g~~~~~~~~ 400 (405)
T TIGR00891 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA---QRLDEYGTALAS 400 (405)
T ss_pred HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHH---HhccccchhHHh
Confidence 77777888899999999999999999999999999999999999954 4556 7766655
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=115.02 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=120.8
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP-SFAVLIIGRLL 143 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l 143 (514)
.....|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++
T Consensus 224 ~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l 301 (393)
T PRK09705 224 LIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMV 301 (393)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHH
Confidence 33445555556899999999999999999999999999999999999999998888777766554333 22222 2346
Q ss_pred Hhccccccccchhhhhhhccc-cccccccchhhHHHHHHHHHHHHHHhhhcccCCCCc-cchhhHhhchHHHHHHHHH-H
Q 010273 144 AGVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHI-NWRVMLGVGILPSVFIALA-L 220 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~Wr~~f~~~~~~~~~~~~~-~ 220 (514)
.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+.+.+ .. +|...|++..+..++..+. .
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS---ISGNYLMDWAFHALCVVGLMIITL 378 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchHHHHHHHHHHHHHHHHHH
Confidence 688888888877777777775 5789999999999999999999999998554 33 4788888866666655544 5
Q ss_pred hhccCCh
Q 010273 221 FVIPESP 227 (514)
Q Consensus 221 ~~~~e~~ 227 (514)
.+.||++
T Consensus 379 ~~~~~~~ 385 (393)
T PRK09705 379 RFAPARF 385 (393)
T ss_pred Hhccccc
Confidence 5667765
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=118.85 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=115.1
Q ss_pred HHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSLSLS 377 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~ 377 (514)
..+.....++....++|.|+.+..+.+....+...........++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445666777889998775445555666666767788888999999999999 99999999888888776654321
Q ss_pred HHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 378 LTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR--LRAQASALGAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
.. ........... .........+...++..|.+|++ .|.++.++.+...++|+.++|.+.+.+.+..||+
T Consensus 97 ~~-----~~~~~~l~l~l---i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 97 EI-----HPSFLYLSLAI---IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred hc-----chhHHHHHHHH---HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 10 00001111111 11122222355567889999875 6999999999999999999999999999999999
Q ss_pred cEehhhHHHHHHHHHH
Q 010273 456 GTFFVFSLISALSVAF 471 (514)
Q Consensus 456 ~~~~~~~~~~~~~~~~ 471 (514)
..|.+.++..+++.+.
T Consensus 169 ~~F~iaaigm~l~li~ 184 (493)
T PRK15462 169 MGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888766655554444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=119.52 Aligned_cols=170 Identities=17% Similarity=0.060 Sum_probs=120.5
Q ss_pred HhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHH
Q 010273 301 FQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTF 380 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 380 (514)
+....+........|.+.++.+.+. ...+.......++..++.++.|+++||+|||+.+..+.++..++..+......
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~- 90 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET- 90 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc-
Confidence 3333333344456788877776554 45556666677888999999999999999999998887777776665543321
Q ss_pred hcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehh
Q 010273 381 LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFV 460 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 460 (514)
...+.......+.......+..+++..|.+|+++|+++.|+.+....++..++|.+.+.+.+..+|+..+++
T Consensus 91 --------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 91 --------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred --------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 111111222233333333455667888999999999999999999999999999998888888888888888
Q ss_pred hHHHHHHHHHHhhhccccCC
Q 010273 461 FSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (514)
.+++.++..++.....+|++
T Consensus 163 ~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 163 MAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 88777777666666666654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=114.76 Aligned_cols=145 Identities=12% Similarity=0.004 Sum_probs=119.3
Q ss_pred HhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc
Q 010273 69 IIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGI 148 (514)
Q Consensus 69 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 148 (514)
.|...+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.
T Consensus 228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 307 (382)
T PRK11128 228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTF 307 (382)
T ss_pred HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444678999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred cccccchhhhhhhccccccccccchhhH-HHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHH
Q 010273 149 GFGVMIAPLYIAEISPSIARGSLTSFPE-IFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 149 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 218 (514)
+...+....++.+. +++++++.++.+. ....+|..+||.++|.+. +..|+ ..|+..+++.++.++
T Consensus 308 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~---~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 308 TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY---QHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccH-HHHHHHHHHHHHHHH
Confidence 98888888888886 5666788888876 556778889999999944 45576 455555555544433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=115.95 Aligned_cols=155 Identities=14% Similarity=0.051 Sum_probs=118.2
Q ss_pred hcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHh-----hhhHHHH
Q 010273 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIA-LAAIVFQAGAAIMTL-----APSFAVL 137 (514)
Q Consensus 64 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~ 137 (514)
......|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.+
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 3344567666789999999999999999999999999999999999888764 333334443333332 2456777
Q ss_pred HHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHH
Q 010273 138 IIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIA 217 (514)
Q Consensus 138 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~ 217 (514)
++..++.|++.+...+ ....+.|.. +++|++++|+.+....+|..++|.+++. +.+..||+..|++.+++.++..
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~---l~~~~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVL---FIGFFGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcchHHHHHHHHHHHHHHH
Confidence 7888888988876654 345666764 5689999999999999999999999988 4456799999999887777766
Q ss_pred HHHhhc
Q 010273 218 LALFVI 223 (514)
Q Consensus 218 ~~~~~~ 223 (514)
+...++
T Consensus 395 ~~~~~~ 400 (402)
T TIGR00897 395 FLTAFI 400 (402)
T ss_pred HHHHHh
Confidence 655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=116.36 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=115.2
Q ss_pred cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...|.+.++.+.+.. ..+.......++..++.++.|++.||+|||+.+..+.++..++.++.....+ ...
T Consensus 41 ~~l~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~ 110 (394)
T PRK10213 41 SLLTPMAQDLGISEG-VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS---------FSL 110 (394)
T ss_pred hhHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh---------HHH
Confidence 356777777765554 4455555577888899999999999999999999998888877666544322 112
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
++..-...+.......|...+++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||+..|++.+++.++..+.
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 22222333333334456677788999999999999999999999999999999999999899998888877666655544
Q ss_pred hhhccccC
Q 010273 472 VYKCVPET 479 (514)
Q Consensus 472 ~~~~~~~~ 479 (514)
.....|+.
T Consensus 191 ~~~~~p~~ 198 (394)
T PRK10213 191 IIKSLPSL 198 (394)
T ss_pred HHHHCCCC
Confidence 44444543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=121.26 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 010273 290 RMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTI 369 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 369 (514)
+..++...+................|.+. +.+ .+....++......++..++.++.|+++||+|||+.+..+.++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcC-CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 34444444444444433333444556554 454 5555667777778899999999999999999999988887777776
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 370 CLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 449 (514)
+.++....... . .. ...+.......+.+.....+.....+.|.+|+++|++++|+.+....+++.+++.+.+...
T Consensus 104 ~~~~~~~~~~~--~--~~-~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 104 VMLLMGFVPWA--T--SS-IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHHHHhccccc--c--ch-HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 66554432110 0 00 1111122222233333333445566778999999999999999999999999988877654
Q ss_pred h-hhhcCcEehhhHHHHHHHHHHhhhccccC
Q 010273 450 H-AITVGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 450 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
+ ..+|+..|++.+++.++..+..+++.+|.
T Consensus 179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 179 AWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4 46888888888888777666656666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=114.93 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=115.9
Q ss_pred hhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHh
Q 010273 70 IFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL---A-PSFAVLIIGRLLAG 145 (514)
Q Consensus 70 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G 145 (514)
+++.+++|.+......+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|
T Consensus 275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (438)
T PRK09952 275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN 354 (438)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567788988877666666677777889999999999999999999887766655443322 1 23444455667778
Q ss_pred ccccccccchhhhhhhccccccccccchhhHH-HHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhcc
Q 010273 146 VGIGFGVMIAPLYIAEISPSIARGSLTSFPEI-FINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIP 224 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~ 224 (514)
++.+...+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+.+.+.. ..+|+..+...++..++..+..+.++
T Consensus 355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 88887788889999999999999988888544 44578888998888854321 23588888887777777766666666
Q ss_pred CCh
Q 010273 225 ESP 227 (514)
Q Consensus 225 e~~ 227 (514)
|+.
T Consensus 434 ~~~ 436 (438)
T PRK09952 434 DNQ 436 (438)
T ss_pred ccc
Confidence 643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=124.17 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=127.3
Q ss_pred HHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSL 378 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 378 (514)
..+.............|.+.++.+.+. ...++......++..++.++.|+++||+|||+.+..+.++..++.++.....
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 88 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP 88 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC
Confidence 333333334445567788887776554 4556666778899999999999999999999999988888777766654432
Q ss_pred HHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEe
Q 010273 379 TFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTF 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 458 (514)
. ...++......+.......+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+..+|++.|
T Consensus 89 ~---------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 89 N---------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred C---------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 2 2222333334444444555677788999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhccccCC
Q 010273 459 FVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
++.+.+.++..++..+..++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcc
Confidence 8887777766666555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.05 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=114.9
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
......|.+..+.+.+ ....++......++..++.++.|+++||+|||+.+..+.++..++..+......... .+
T Consensus 17 ~~~~~~~~~~~~~~~s-~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 91 (365)
T TIGR00900 17 ITQVALPLYVLAGTGS-ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-LN--- 91 (365)
T ss_pred HHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-Cc---
Confidence 3445667777776544 445566677788999999999999999999999999888777766666555432111 01
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
...+.......+.......+...++..|.+|+++|++++|+.+....+|..++|.+.+.+.+..+|+..+++.++..++.
T Consensus 92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122222233333334456677889999999999999999999999999999999999999889988887776666555
Q ss_pred HHHhh
Q 010273 469 VAFVY 473 (514)
Q Consensus 469 ~~~~~ 473 (514)
.+...
T Consensus 172 ~~~~~ 176 (365)
T TIGR00900 172 ALLIV 176 (365)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=116.79 Aligned_cols=162 Identities=11% Similarity=-0.019 Sum_probs=116.1
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcch
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQL 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
.+....+.+.++++..+.+....++......+...+..++.|+++||+|||+.+..+..+..++.+....... .
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------~ 99 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE------P 99 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc------H
Confidence 3344556677766554456667777777777888888999999999999999999988888887776654321 1
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHH
Q 010273 387 GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 466 (514)
+. +.......+.......|...+++.|.+|+++|+++.|+.+...++|..++|.+.+.+. ..+|+..|++.+++.+
T Consensus 100 --~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~ 175 (400)
T PRK11646 100 --WL-LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV 175 (400)
T ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 11 1222222233333334556677889999999999999999999999999999999988 6788888887777766
Q ss_pred HHHHHhhhcccc
Q 010273 467 LSVAFVYKCVPE 478 (514)
Q Consensus 467 ~~~~~~~~~~~~ 478 (514)
+..++.....++
T Consensus 176 ~~~i~~~~~~~~ 187 (400)
T PRK11646 176 LAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHhCCc
Confidence 665554444454
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=114.16 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=110.6
Q ss_pred HhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH-H
Q 010273 301 FQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSL-T 379 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~-~ 379 (514)
+..+........+.|.++++..+.+....++......++..++.++.|+++||+|||+.+..+.++..++.++..... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~ 90 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444445566778655544445566667777778899999999999999999999999998888888777665543 2
Q ss_pred HhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 010273 380 FLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA-------- 451 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-------- 451 (514)
. +...+ .....+... +..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+.
T Consensus 91 ~--------~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 91 Y--------SVLLL-LRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred H--------HHHHH-HHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 21222 222222222 22334557788999999999999999888888888887777666542
Q ss_pred --hhcCcEe-hhhHHHHHHHHHHhhhcccc
Q 010273 452 --ITVGGTF-FVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 452 --~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (514)
.+|++.+ ...+++..+..++.+...++
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 3677777 33344444444443444444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=119.61 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=124.6
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
++.+....+...........+.|.+.++.+.+.. ..++......++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPL-HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3444445555555555667788999988765544 445555667788889999999999999999998887766666555
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
....... ...++......+.......|...+++.|.+|+++|+++.|+.+...++|..++|.+.+.+.+..
T Consensus 91 ~~~~~~~---------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~ 161 (471)
T PRK10504 91 FCALSGT---------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA 161 (471)
T ss_pred HHHHhCC---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence 4433211 1112222233334443445666777889999999999999999999999999999999999988
Q ss_pred hcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 453 TVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
+|++.|.+...+..+..+......++
T Consensus 162 gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 162 SWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99888888777666666555544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-12 Score=119.10 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=116.1
Q ss_pred eccchH-HHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 310 TVYYSP-TIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 310 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
.....| .+.++.+ .+....++......++..++.++.|+++||+|||+.+..+.++..++..+..+. + +.
T Consensus 15 ~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~-~~-- 85 (352)
T PF07690_consen 15 ISPALPLYLAEELG-LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----S-NF-- 85 (352)
T ss_dssp HHHHHH-HHHCCST-TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----C-CH--
T ss_pred HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----h-hH--
Confidence 334556 3444444 444556666776889999999999999999999999988888888774444322 1 11
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
+ .++......+.......+....++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+..+|+..+++.+++.++.
T Consensus 86 ~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 86 W-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred H-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence 2 233333344444445557777889999999999999999999999999999999999998889999999998888888
Q ss_pred HHHhhhccccC
Q 010273 469 VAFVYKCVPET 479 (514)
Q Consensus 469 ~~~~~~~~~~~ 479 (514)
.++...+.++.
T Consensus 165 ~il~~~~~~~~ 175 (352)
T PF07690_consen 165 AILFILFLPEP 175 (352)
T ss_dssp HHHHHCCC---
T ss_pred hhhHhhhhhhc
Confidence 77544444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=101.14 Aligned_cols=177 Identities=18% Similarity=0.139 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHH
Q 010273 45 LACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAG 124 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 124 (514)
|..++...+.+...+ ....++..-|++++.+|+|.+|...+.++-.+|..+ .++.|.+.|++|++.++.+|.+...+|
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 444455555444444 456677788899999999999999999999999987 588999999999999999999999999
Q ss_pred HHHHHhh-------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC
Q 010273 125 AAIMTLA-------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP 197 (514)
Q Consensus 125 ~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 197 (514)
..+..++ .++|.+.+..++.|.+.+....++.....+.|| ++||++.|+.-...+++..+-..+... +.
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~---~f 155 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA---FF 155 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH---Hc
Confidence 8887664 467888888899999888777777777778887 589999999999999987654433333 22
Q ss_pred CCccchhhHhhchHHHHHHHHHHhhccCCh
Q 010273 198 AHINWRVMLGVGILPSVFIALALFVIPESP 227 (514)
Q Consensus 198 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 227 (514)
+...-+..+.....+.++.++..++++..|
T Consensus 156 ~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 156 GDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 222334444445555555555555555444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=118.37 Aligned_cols=167 Identities=9% Similarity=-0.078 Sum_probs=121.1
Q ss_pred HHHHHHhhhccceeeccchHHHhhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHH
Q 010273 296 CGIQCFQQITGIDATVYYSPTIFKGA--GIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~ 372 (514)
+....+....+++....++|.|+++. .+.+....+.......+...++.+++|+++|| +|||+.+..+.++..++.+
T Consensus 15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 33444444555667777899998764 34455566777777889999999999999999 8999999999988888877
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL---RAQASALGAVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~~~~~ 449 (514)
++..... ...+.....+.+.+.....|...++..+.+|++. |+.+.++.+...++|..++|.+.+.+.
T Consensus 95 ~~~~~~~---------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 95 MLAMSIY---------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHhccc---------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 6654321 1111122222333444445666677888887653 888999999999999999999999999
Q ss_pred hhhhcCcEehhhHHHHHHHHHH
Q 010273 450 HAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 450 ~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
+..||+..|.+.++..+++.+.
T Consensus 166 ~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HhcChHHHHHHHHHHHHHHHHH
Confidence 9889988888877655555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=118.56 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=105.4
Q ss_pred ccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHH
Q 010273 311 VYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIAL 390 (514)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
....|.+.++ + .+....++......++..++.++.|+++||+|||+.+..+.++..++.+++.+..... .. ..
T Consensus 49 ~~~~p~l~~~-g-~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~--~~---~~ 121 (452)
T PRK11273 49 ALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SS---IA 121 (452)
T ss_pred HHhhHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc--cc---HH
Confidence 3455655544 4 4455667777778899999999999999999999999988887777776665432110 01 11
Q ss_pred HHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcEehhhHHHHHHHH
Q 010273 391 AILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA-IAMSFLSVSHAITVGGTFFVFSLISALSV 469 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 469 (514)
.++......+.+.....|.....+.+.+|+++|++++|+.+....+|+.+ +|.....+....+|+..|++.+++.++..
T Consensus 122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~ 201 (452)
T PRK11273 122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA 201 (452)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 11222222223333333444456778889999999999999999988755 44433333333478888888777776666
Q ss_pred HHhhhccccC
Q 010273 470 AFVYKCVPET 479 (514)
Q Consensus 470 ~~~~~~~~~~ 479 (514)
++..++.+|+
T Consensus 202 ~l~~~~~~~~ 211 (452)
T PRK11273 202 LFAFAMMRDT 211 (452)
T ss_pred HHHHHHccCC
Confidence 6655666654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=115.58 Aligned_cols=162 Identities=15% Similarity=0.005 Sum_probs=116.7
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
......|.+.++.+.+.. ..++......++..++.++.|++.||+|||+.+..+..+..++.++.....+
T Consensus 21 ~~~~~l~~~~~~~g~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--------- 90 (382)
T PRK10091 21 GIMGVLTELAHDVGISIP-AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--------- 90 (382)
T ss_pred HHHhChHHHHHHcCCCHH-HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence 444466777777665544 4566666688999999999999999999999999988888777766554332
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
...+.....+.+.......+.......|.+|+++|+.++|+......++..+++.+.+.+.+..+|++.|.+.+++.++.
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 11122222223333222234445667788898899999999999999999999999999988889999988888777666
Q ss_pred HHHhhhccccCC
Q 010273 469 VAFVYKCVPETK 480 (514)
Q Consensus 469 ~~~~~~~~~~~~ 480 (514)
.+..+...|+.+
T Consensus 171 ~~~~~~~lp~~~ 182 (382)
T PRK10091 171 LASIYFWVPDIR 182 (382)
T ss_pred HHHHHHhCCCCC
Confidence 665555566643
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=115.08 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=111.0
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcch
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQL 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
...+.+++=-++++.+.. +...+...+..-.+.++.-++.+++.+|+|+-+++..+..+..+=++.+....+.
T Consensus 387 ~~lv~tFLfWHled~~~~-~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~------ 459 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGI-KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNP------ 459 (618)
T ss_pred HHHHHHHHHHHHhhcCCc-ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCc------
Confidence 334444555566676643 3344566676778889999999999999999999998888777766666554432
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHH
Q 010273 387 GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA-VGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLIS 465 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 465 (514)
|.++..- .+.+.....++....+|+....||+.++++.|+.. ....+|-.+|+.+.|.+.+.+|-+..|.++++.+
T Consensus 460 --W~vLPie-ilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 460 --WMVLPIE-ILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred --hheeeHH-HHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 2222111 12222222233345578889999999999999985 4567888999999999999999888888888887
Q ss_pred HHHHHHhhh
Q 010273 466 ALSVAFVYK 474 (514)
Q Consensus 466 ~~~~~~~~~ 474 (514)
++..+....
T Consensus 537 l~~l~~~~~ 545 (618)
T KOG3762|consen 537 LVTLALFIS 545 (618)
T ss_pred HHHHHHHHH
Confidence 777666443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=117.99 Aligned_cols=177 Identities=18% Similarity=0.098 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 372 (514)
+..+++..+....-......-.|.+.++.+.+.. ..++....+.++.....+..|+++||+|||+.+..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~-~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGN-ELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444455555555555566678888877765444 455556667888888899999999999999999999888888777
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeecc-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIF-PLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
......+ ...++..-.+.+....+..|.....+.+.+ |+++|++++|+......+|..++|.+.+.+.+.
T Consensus 87 ~~~~a~~---------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 87 AAAFSPT---------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHcCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6654432 112222222233333333444444444544 678999999999999999999999999999999
Q ss_pred hhcCcEehhhHHHHHHHHHHhhhccccC
Q 010273 452 ITVGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 452 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
.+|++.|++...+.++..++..+.+|+.
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999888777777766666666654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=113.94 Aligned_cols=140 Identities=9% Similarity=0.020 Sum_probs=117.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchh
Q 010273 77 KITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAP 156 (514)
Q Consensus 77 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 156 (514)
+.+....|.+.+...+...++.+..|++.||+|+|+.+.++.++.++...+...++|.+.+++.++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888888888999999999999998766655666
Q ss_pred hhhhhccccccccccchh-hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 157 LYIAEISPSIARGSLTSF-PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
.++.+..+++.++...+. .+....+|..+++++++.+ .+..||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l---~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM---YDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH---HHhcccHHHHHHHHHHHHHHHHH
Confidence 677777777777777766 6778899999999999994 44569999999977776665554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=113.25 Aligned_cols=154 Identities=17% Similarity=0.063 Sum_probs=128.5
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 010273 320 GAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNV 399 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
+..+.+....+++.....+...++++++|++.||+.|++++.++..+..++.+.-.+... .+.+...-.+.
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~---------Fwq~~l~R~~v 131 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH---------FWQVLLCRGFV 131 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 344455566677788888999999999999999999999999999998888888777654 33344455566
Q ss_pred hhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHHHHhhhcccc
Q 010273 400 AFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
+..-..+.|+...+++|.+|.++|++++++.+....+|.++|-.+...+.+..+ |++.|...+++.++..++..++.+|
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 677778889999999999999999999999999999999988877777777666 9999999999999999998888877
Q ss_pred CCCC
Q 010273 479 TKGK 482 (514)
Q Consensus 479 ~~~~ 482 (514)
.+++
T Consensus 212 P~rg 215 (493)
T KOG1330|consen 212 PERG 215 (493)
T ss_pred cccc
Confidence 6654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=112.73 Aligned_cols=162 Identities=14% Similarity=0.028 Sum_probs=112.7
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
....-+|.+.++.+.+.. ........+.++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 34 ~~~p~l~~i~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------- 103 (413)
T PRK15403 34 LIQPGIINVVRDFNADVS-LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------- 103 (413)
T ss_pred hhccCHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC---------
Confidence 333344555555555444 4455555577889999999999999999999999887777766655544322
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
...++..-...+.......+..+.+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++.
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11112222222222222233455677889999999999999999999999999999998888889999998888877777
Q ss_pred HHHhhhccccCC
Q 010273 469 VAFVYKCVPETK 480 (514)
Q Consensus 469 ~~~~~~~~~~~~ 480 (514)
.+..++..||++
T Consensus 184 ~~~~~~~lp~~~ 195 (413)
T PRK15403 184 FVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhCCCCc
Confidence 665555566654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=114.86 Aligned_cols=148 Identities=7% Similarity=-0.044 Sum_probs=112.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhc
Q 010273 324 KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFS 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.+....+.....+.++..++.++.|+++||+|+|+.+..+.++..++.++....... . ...++..-.+.+...
T Consensus 73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~---~~~l~~~r~~~G~~~ 145 (465)
T TIGR00894 73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG----G---IALVVFCRVIQGLAQ 145 (465)
T ss_pred CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc----C---chHHHHHHHHHHHhc
Confidence 345556666777889999999999999999999999988877776665554332210 0 122333344455566
Q ss_pred cccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 404 VGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA-ITVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
....|....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. .+|+..|++.+++.++..++.+...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 666777888999999999999999999999999999999999999988 499999999888777766665555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=111.01 Aligned_cols=159 Identities=15% Similarity=0.117 Sum_probs=110.6
Q ss_pred cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...|.+.++.+.+.. ..+.......++..++.++.|+++||+|||+.+..+..+..++.+....... ...
T Consensus 29 p~~~~i~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~ 98 (394)
T PRK11652 29 PAIADMARDLNVREG-AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS---------LTV 98 (394)
T ss_pred ccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---------HHH
Confidence 346777777765544 5566666688999999999999999999999988887777766655443221 111
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
+.......++......+....+..|.+++++++.+.++.+....++..++|.+.+.+.+..||+..+++.+++.++..+.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 12222222222222234444566788888889999999999999999999999999988889988888877766655555
Q ss_pred hhhccccCC
Q 010273 472 VYKCVPETK 480 (514)
Q Consensus 472 ~~~~~~~~~ 480 (514)
..+..||++
T Consensus 179 ~~~~~~~~~ 187 (394)
T PRK11652 179 MARWMPETR 187 (394)
T ss_pred HHHhCCccC
Confidence 455556543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=110.90 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=113.5
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
.+....|.+.++.+.+. ...+.......++..++.++.|+++||+|||+.+..+.....++.........
T Consensus 31 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------- 100 (406)
T PRK15402 31 MIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS--------- 100 (406)
T ss_pred hHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 33344566666666544 45555556678889999999999999999999998887777766665544322
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHH
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALS 468 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 468 (514)
...++......+.......+...+...|.+|++.|+.+.++......++..++|.+.+.+.+..+|+..+++.+++.++.
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~ 180 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALS 180 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 11122222222222223334556777899999999999999888888899999999999988889998888888877776
Q ss_pred HHHhhhccccCC
Q 010273 469 VAFVYKCVPETK 480 (514)
Q Consensus 469 ~~~~~~~~~~~~ 480 (514)
.+..+...||++
T Consensus 181 ~~~~~~~~~~~~ 192 (406)
T PRK15402 181 FFGLWRAMPETA 192 (406)
T ss_pred HHHHHHhCCCCC
Confidence 665555566554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=110.67 Aligned_cols=137 Identities=11% Similarity=-0.008 Sum_probs=101.5
Q ss_pred chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHH
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVLIIGRLL 143 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l 143 (514)
....|...++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.++....+ +...+.+..+.
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 3455666667799999999999999999999999999999999999999988887776655544332 22222222222
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
.+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+.+. +..|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~---~~~g~~~~ 389 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG---ITMGLGAA 389 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH---HcccHHHH
Confidence 222223334456678899999999999999999999999999999998854 44565543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=100.04 Aligned_cols=320 Identities=17% Similarity=0.130 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccc
Q 010273 87 VGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI 166 (514)
Q Consensus 87 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 166 (514)
.++-+..+.+++++.+.+.|+.|+|+.++++..++....+..-+- |-+.++..-.+.|+|.+..+...-.++++..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677788889999999999999999999999999999888777664 5667788899999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhcccCCCC-----ccch-hhH----------hh-ch--HHHHHHHHHHhhccCCh
Q 010273 167 ARGSLTSFPEIFINLGILLGYISNYAFSRLPAH-----INWR-VML----------GV-GI--LPSVFIALALFVIPESP 227 (514)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~-----~~Wr-~~f----------~~-~~--~~~~~~~~~~~~~~e~~ 227 (514)
++.+-.++..+....+.++|..+-.......+. .+-+ +.+ .+ .. .+..+.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999888888888886665543322111 1111 111 01 11 11111111122223211
Q ss_pred hHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccc
Q 010273 228 RWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGI 307 (514)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (514)
. . .++ +.. +....+.-+...+...+++-....+.++...+...+..
T Consensus 215 ~-~------~~~-----------------------~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~--- 260 (461)
T KOG3098|consen 215 V-V------NCK-----------------------SSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWI--- 260 (461)
T ss_pred h-h------hhh-----------------------hhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH---
Confidence 0 0 000 000 00011111222222222111112222221111111111
Q ss_pred eeeccchHHH--hh-hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhhhhhHHHHHHHHHHHHHHHHh
Q 010273 308 DATVYYSPTI--FK-GAGIKGNNELLAATVAVGFTKTIFILIAIILIDK---VGRKPLLYVSTIGMTICLLSLSLSLTFL 381 (514)
Q Consensus 308 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 381 (514)
...|.. +. ..+..+....+...+..+++.+++....+.+.+| +|+++.+.++..+..+++++........
T Consensus 261 ----~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~d 336 (461)
T KOG3098|consen 261 ----SIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPND 336 (461)
T ss_pred ----hccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccccc
Confidence 111111 11 3333444455666677788888888888888876 5777888777777766666555443322
Q ss_pred cC--c-------chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 382 GN--G-------QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 382 ~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
.+ + ..........+....++.-.......+.++...+ ++.|..+.++...-..++..++.....
T Consensus 337 ap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 337 APLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred CCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 0 0011223333334444444455566677788887 477888888888777777666554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=113.73 Aligned_cols=164 Identities=13% Similarity=-0.017 Sum_probs=115.6
Q ss_pred HHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHHHHHH
Q 010273 298 IQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLLSLSL 376 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~~~~~ 376 (514)
...+..-.+++....+++.|+++..+.+..........+.....+..+++|+++|| +|||+.+..+.++..++.+...+
T Consensus 21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~ 100 (489)
T PRK10207 21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM 100 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666777888776544455555555555666667777899999999 99999999999999888777665
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010273 377 SLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR--LRAQASALGAVGSRVSSGAIAMSFLSVSHAITV 454 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 454 (514)
.... ...+.......+.......|...+++.|.+|++ +|+.++++.....++|..++|.+.+.+.+..||
T Consensus 101 ~~~~--------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 101 SLLK--------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred hccc--------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 4211 111212222334444555567778899999877 457789999999999999999999999999999
Q ss_pred CcEehhhHHHHHHHH
Q 010273 455 GGTFFVFSLISALSV 469 (514)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (514)
++.|++.++...++.
T Consensus 173 ~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 173 SVTYNLCGAGLIIAL 187 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988887654433333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=112.71 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=134.2
Q ss_pred cchhHhhh-hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010273 65 MSGAIIFI-KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLL 143 (514)
Q Consensus 65 ~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 143 (514)
+...+|.+ ++++|.++..+|++.+++.+|..++.+..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34456755 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
.|++.....+...+.+.+..|++.|||+++++.+....+..+|.++.|. +.+..|-+..+.+.++..++..++
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~---la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGF---LADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999998888889999999999999999999999999999999999999 445678888888766655554444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-10 Score=112.21 Aligned_cols=160 Identities=14% Similarity=0.024 Sum_probs=105.9
Q ss_pred hHhhhhhccccChhHHHH------------HHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--
Q 010273 68 AIIFIKEDLKITEVQQEV------------LVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPS-- 133 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-- 133 (514)
..|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++.+..+.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666777776432111 223344566678889999999999999999988888877766654321
Q ss_pred --HHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCC-------Cccchh
Q 010273 134 --FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPA-------HINWRV 204 (514)
Q Consensus 134 --~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-------~~~Wr~ 204 (514)
...+...-+...++..+..+....+.+|.+|.+.|++++++......+|.++++.+.+.+.+... ..++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 11111111111222222445667778999999999999999999999999999988887543110 234566
Q ss_pred hHhhchHHHHHHHHHHhhccCCh
Q 010273 205 MLGVGILPSVFIALALFVIPESP 227 (514)
Q Consensus 205 ~f~~~~~~~~~~~~~~~~~~e~~ 227 (514)
.|++.++..++..+..+++||++
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 67776666666555667789876
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=108.93 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=138.6
Q ss_pred hhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHh--------hh
Q 010273 63 GVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRK--WTIALAAIVFQAGAAIMTL--------AP 132 (514)
Q Consensus 63 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~ 132 (514)
++......+..+++|++..+...+.-+..+...+|++++|++.||+|.| +++..+++++.+..+...+ .+
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~ 378 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK 378 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 4445556677789999999999999999999999999999999999999 8999999888766666555 57
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHH
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~ 212 (514)
+-+.+.+.-++.|+..|+..+.+.++.++..|+++.+..+|++....-....+||++-+.+.+... +-|+.+....+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~l 456 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVL 456 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999999999665432 468888877777
Q ss_pred HHHHHHHHhhccCC
Q 010273 213 SVFIALALFVIPES 226 (514)
Q Consensus 213 ~~~~~~~~~~~~e~ 226 (514)
.++..++.++++.+
T Consensus 457 f~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 457 FLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHhhccch
Confidence 77777766666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=109.57 Aligned_cols=158 Identities=10% Similarity=-0.031 Sum_probs=108.1
Q ss_pred cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...|.+.++.+.+. .+.++....+.++..++.+..|+++||+|||+.+.........+........ + ...
T Consensus 12 ~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~------~---~~~ 81 (368)
T TIGR00903 12 PVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF------N---YEW 81 (368)
T ss_pred hhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc------c---HHH
Confidence 46677777776554 4566666667889999999999999999988876544333333221111101 1 111
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
++..-...+..... .+.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|++.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 22222222222222 22333445788999999999999999999999999999999999999999998888888777777
Q ss_pred hhhccccCC
Q 010273 472 VYKCVPETK 480 (514)
Q Consensus 472 ~~~~~~~~~ 480 (514)
.++.+||..
T Consensus 161 ~~~~lp~~p 169 (368)
T TIGR00903 161 VLAALPALP 169 (368)
T ss_pred HHHHcCCCC
Confidence 777777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=111.35 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=104.0
Q ss_pred eeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhh
Q 010273 309 ATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGI 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
....+.|.+.++.+.+.. ..+.......++..++.++.|+++||+|||+.+..+.++..++.++.......
T Consensus 54 ~~~~~~~~l~~~~gls~~-~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-------- 124 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTKS-DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-------- 124 (476)
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH--------
Confidence 344456677777776544 45555666778888999999999999999999888777766665555443221
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhcCcEeh
Q 010273 389 ALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH---------AITVGGTFF 459 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---------~~g~~~~~~ 459 (514)
.. +....+..+++.....+ ...++.|.+|+++|+.+.|+.+...++|+.+++.+.+.+.. ..||++.|+
T Consensus 125 ~~-l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~ 202 (476)
T PLN00028 125 TG-FIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF 202 (476)
T ss_pred HH-HHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 11 11111222222222222 33457899999999999999998888888877766654432 147888999
Q ss_pred hhHHHHHHHHHHhhhcc
Q 010273 460 VFSLISALSVAFVYKCV 476 (514)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (514)
+.+++.++..+..+++.
T Consensus 203 i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 203 VPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 88888777666655443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=111.10 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=116.9
Q ss_pred cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...|.+.++.+.+ ....+.......++..++.++.|+++||+|||+.+..+.++..++......... ...
T Consensus 12 p~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~---------~~~ 81 (377)
T PRK11102 12 PALPVIAADFGVS-AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT---------IDQ 81 (377)
T ss_pred ccHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc---------HHH
Confidence 3567777776654 445566666688899999999999999999999999888887777776654332 111
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
+.......+++.....+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+++.++..+.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 22222223333333445566788899999999999999999999999999999999999889888888887777776666
Q ss_pred hhhccccC
Q 010273 472 VYKCVPET 479 (514)
Q Consensus 472 ~~~~~~~~ 479 (514)
.....+|+
T Consensus 162 ~~~~~~~~ 169 (377)
T PRK11102 162 VFFFIPET 169 (377)
T ss_pred HHHhCCcc
Confidence 55555554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=109.54 Aligned_cols=147 Identities=14% Similarity=-0.011 Sum_probs=110.6
Q ss_pred HhhhhhccccChhHHHHHHHHHHH-HHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHH
Q 010273 69 IIFIKEDLKITEVQQEVLVGILSI-ISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL------APSFAVLIIGR 141 (514)
Q Consensus 69 ~~~i~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r 141 (514)
.+...+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+....
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 344445689999999999888764 66777899999999999999998887766443332221 12333445555
Q ss_pred HHHhccccccccchhhhhhhcccc-ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHH
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPS-IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 218 (514)
.+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.+++.+ .+..||+..|++.+++.++..+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l---~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL---TDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHccHHHHHHHHHHHHHHHH
Confidence 666777777777777787777776 7899999999999999999999999984 4456899999887766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=110.08 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=153.1
Q ss_pred HHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh--hHHHHHHHHHHHHHHH
Q 010273 48 AFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG--RKWTIALAAIVFQAGA 125 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~ 125 (514)
+.+..+...+..+...+....+|...++.+.+..+...+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 34444445555556777777889899999999999999999999999999999999999988 6778888999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 126 AIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 126 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
+.++++++++.++..-.+.|+..|........++.|..+.++-..+.|+.....+++.++||++++.+.+.. .+|...
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t--g~Y~~~ 457 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT--GNYDHA 457 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc--CCeeee
Confidence 999999999999999999999999988888889999999999999999999999999999999999854432 249999
Q ss_pred HhhchHHHHHHHHHHhhcc
Q 010273 206 LGVGILPSVFIALALFVIP 224 (514)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~ 224 (514)
|+..++..++....++..+
T Consensus 458 f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhhcChHHHHHHHHHHHhH
Confidence 9999988888887777766
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=109.70 Aligned_cols=152 Identities=14% Similarity=-0.003 Sum_probs=105.8
Q ss_pred hHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHH
Q 010273 314 SPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAIL 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
.|.+.++.+. +....+.......++..++.++.|+++||+|||+.+..+..+..++.+....... . +. +.
T Consensus 29 ~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~--~~-l~ 98 (401)
T PRK11043 29 FKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES------A--AQ-LL 98 (401)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC------H--HH-HH
Confidence 3444555554 4556666666688999999999999999999999998887777666655543321 1 11 11
Q ss_pred HHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhh
Q 010273 394 SVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVY 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 473 (514)
......+.......+...+...|.+|+++++...+..+....++..++|.+.+.+.+..+|+..+++.+++.++..+...
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222344466788899888888999988889999999999999999988998888888777776665544
Q ss_pred hc
Q 010273 474 KC 475 (514)
Q Consensus 474 ~~ 475 (514)
..
T Consensus 179 ~~ 180 (401)
T PRK11043 179 RL 180 (401)
T ss_pred Hc
Confidence 43
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-10 Score=104.63 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010273 46 ACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125 (514)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 125 (514)
.+.+.+.++..+++. .........+-++-|++..+..+..........++.+++..+.||+|||+.++.+..+..+..
T Consensus 272 ~i~~~v~~~qq~sGi--~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 272 LIGIVVSFAQQFSGI--NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHHHHHHhcCc--ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 344444444444443 344456667888899999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhh---hHH------HHHHHHHHH--hccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc
Q 010273 126 AIMTLAP---SFA------VLIIGRLLA--GVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS 194 (514)
Q Consensus 126 ~~~~~~~---~~~------~~~~~r~l~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~ 194 (514)
+++.... +.. ..+++.++. .++.| ..|...-+.+|.+|++.|+.++++......+...+-...-..+.
T Consensus 350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877542 111 112333322 33333 45888999999999999999999998888888766555444433
Q ss_pred cCCCCccchhhHhhchHHHHHHHH-HHhhccCCh
Q 010273 195 RLPAHINWRVMLGVGILPSVFIAL-ALFVIPESP 227 (514)
Q Consensus 195 ~~~~~~~Wr~~f~~~~~~~~~~~~-~~~~~~e~~ 227 (514)
+ ..|= +.|++..+++++..+ .+..+||++
T Consensus 429 ~---~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 429 N---VIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred H---Hhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 2 2232 556665555555544 578899996
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=101.77 Aligned_cols=177 Identities=15% Similarity=0.182 Sum_probs=146.1
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAA 126 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 126 (514)
..++..-..+.++.+ +.+.....+-..++|++..+..++.-...+...++++++|+|.||+|.|+++..+++++.+.++
T Consensus 255 ~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 255 VLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence 334444444555543 3344445556679999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 127 IMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
..-+...-..+.+.-.+.|...|+....+.++..+..|+++-++.+|++....-.+..+||.+-+.+.++.+ +-|..+
T Consensus 334 ~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~ 411 (438)
T COG2270 334 YLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGV 411 (438)
T ss_pred HHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHH
Confidence 888877777777888899999999999999999999999999999999999999999999999998776544 467777
Q ss_pred hhchHHHHHHHHHHhhccCC
Q 010273 207 GVGILPSVFIALALFVIPES 226 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~e~ 226 (514)
....++.++..+..+.+|++
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 76666666666666666654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=92.11 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeee
Q 010273 336 VGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSS 415 (514)
Q Consensus 336 ~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (514)
..++.+++.++.|++.||++||+.+..+.....++.+....... ...........+.......+....+..
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---------ITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677888999999999999999988877776666555443221 111112222222333333456667889
Q ss_pred eccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 416 EIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.++..+..+...+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999988888778887777777766665555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.7e-10 Score=110.96 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=115.9
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhcccc
Q 010273 72 IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSF--AVLIIGRLLAGVGIG 149 (514)
Q Consensus 72 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~ 149 (514)
..++++.+.. +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+
T Consensus 349 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (505)
T TIGR00898 349 DLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT 425 (505)
T ss_pred cccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3344554432 33334556777888999999999999999999999999998888877644 455556667777777
Q ss_pred ccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCCh
Q 010273 150 FGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227 (514)
Q Consensus 150 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 227 (514)
..++....+..|.+|++.|+.++|+.+....+|.+++|.+.+ +.. .++...+++.+...++..+..+++||+.
T Consensus 426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 778888999999999999999999999999999999999887 322 3667778887777777777777889875
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-10 Score=108.45 Aligned_cols=119 Identities=20% Similarity=0.177 Sum_probs=101.3
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcccccccc
Q 010273 75 DLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA-PSFAVLIIGRLLAGVGIGFGVM 153 (514)
Q Consensus 75 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~ 153 (514)
.++ ++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+
T Consensus 252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344 56677888888899999999999999999999999999999888887777665 4667777888899999998888
Q ss_pred chhhhhhhccc-------cccccccchhhHHHHHHHHHHHHHHhhhcc
Q 010273 154 IAPLYIAEISP-------SIARGSLTSFPEIFINLGILLGYISNYAFS 194 (514)
Q Consensus 154 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~ 194 (514)
...++++|..+ ++++|.+.++.+....+|..+++.+.+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988865 456789999999999999999998888754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=105.67 Aligned_cols=156 Identities=12% Similarity=-0.026 Sum_probs=99.8
Q ss_pred hhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHH
Q 010273 67 GAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT--L--APSFAVLIIGR 141 (514)
Q Consensus 67 ~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~r 141 (514)
...| .+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+.++..+... . .++....+..-
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3445 45677899999999999998888899999999999999999988777665444332221 1 12222222222
Q ss_pred HHHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHH
Q 010273 142 LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALAL 220 (514)
Q Consensus 142 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~ 220 (514)
++.++..+...+....++.|++|++.|+.++|+.+...++ .....|.+.+.+.. ...|...++..++..++..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~---~g~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS---IGMETAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHH
Confidence 2222333333445667889999999999999998765443 23346666665321 2235556666656666555555
Q ss_pred hhccC
Q 010273 221 FVIPE 225 (514)
Q Consensus 221 ~~~~e 225 (514)
+++++
T Consensus 421 ~~l~~ 425 (432)
T PRK10406 421 LMLHR 425 (432)
T ss_pred HHhhh
Confidence 55444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=105.15 Aligned_cols=137 Identities=15% Similarity=0.032 Sum_probs=96.5
Q ss_pred hcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHH-H---HhhhhHHHHH
Q 010273 64 VMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAI-M---TLAPSFAVLI 138 (514)
Q Consensus 64 ~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 138 (514)
......|. +++.+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+.... . ...+++..+.
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 34444565 45558999999999998999999999999999999999999888765554332221 1 1123444444
Q ss_pred HHHHHHhccccccccchhhhhhhccccccccccchhhHH-HHHHHHHHHHHHhhhcccCCCCccch
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEI-FINLGILLGYISNYAFSRLPAHINWR 203 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~Wr 203 (514)
+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+.+. ++.|++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~---~~~g~~ 398 (434)
T PRK15075 336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI---HVTGDK 398 (434)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH---HhcCCc
Confidence 555666666666666677889999999999999998644 33445667888888743 344543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-10 Score=106.52 Aligned_cols=152 Identities=10% Similarity=0.056 Sum_probs=105.6
Q ss_pred chHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q 010273 313 YSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAI 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
..+.+.++.+.+ ....++....+.+...+..++.|+++||+|||+++..+..+..++.+....... .
T Consensus 25 ~~~~~~~~~~~s-~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~---------~--- 91 (393)
T PRK11195 25 AAIALLKELHYP-DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH---------P--- 91 (393)
T ss_pred HHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH---------H---
Confidence 344455555544 445566666788999999999999999999999999998887776655433221 1
Q ss_pred HHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHh
Q 010273 393 LSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 472 (514)
.......+.......|...+++.|.+|+++|++++|+......++..++|.+.|.+.+.. +...+.+.+.+.++.. +.
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~ 169 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LF 169 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HH
Confidence 111123344555566888899999999999999999999999999999999999998853 4444444433333332 22
Q ss_pred hhccccC
Q 010273 473 YKCVPET 479 (514)
Q Consensus 473 ~~~~~~~ 479 (514)
.+.+|+.
T Consensus 170 ~~~l~~~ 176 (393)
T PRK11195 170 NLFIPRL 176 (393)
T ss_pred HhcCCCC
Confidence 3445543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=110.21 Aligned_cols=168 Identities=10% Similarity=-0.091 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHH
Q 010273 294 TGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~ 372 (514)
+..+...++...+++....+++.|+++..+.+...................+++|+++|| +|||+.+..+.++..++..
T Consensus 24 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~ 103 (500)
T PRK09584 24 YLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA 103 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 333344444555566677788888865444444444444443444444555789999999 5999999998888887766
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL--RAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
++.+... .. .. +.......+.+.....|...++..|.+|++. +..+.++.+...++|..++|.+.+.+.+
T Consensus 104 l~~~~~~-----~~--~~-l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 104 LVAWSGH-----DA--GI-VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred HHHHhcc-----cH--HH-HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554311 11 11 1111122223333344566677888887543 4567888899999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHH
Q 010273 451 AITVGGTFFVFSLISALSV 469 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~ 469 (514)
..||+..|.+.++...++.
T Consensus 176 ~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 176 KYGWSVAFALSVVGMLITV 194 (500)
T ss_pred hhCHHHHHHHHHHHHHHHH
Confidence 9999988887765444443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=98.97 Aligned_cols=139 Identities=9% Similarity=0.016 Sum_probs=107.7
Q ss_pred hHhhhhh--ccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 010273 68 AIIFIKE--DLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAG 145 (514)
Q Consensus 68 ~~~~i~~--~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 145 (514)
...++.+ .+|+++++.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++...+ ..-++.|
T Consensus 163 ~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g 241 (310)
T TIGR01272 163 LVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALG 241 (310)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence 4445543 479999999999999999999999999999999999999999888888887666665544333 3556889
Q ss_pred ccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHH
Q 010273 146 VGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILP 212 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~ 212 (514)
++.+..+|...+...+..|++ .+.+.++. ....+|..+.|++.|.+. +..|.+..|++..++
T Consensus 242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la---d~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 242 LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA---DCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH---HhccchHHHHHHHHH
Confidence 999999999999998888753 45566665 556688899998888843 456778887754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-07 Score=88.85 Aligned_cols=375 Identities=11% Similarity=-0.054 Sum_probs=187.0
Q ss_pred HHHhhhhhhhhhhhcchhHhhhhhcccc-ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010273 51 ASLNSVLLGYDVGVMSGAIIFIKEDLKI-TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMT 129 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 129 (514)
++.+.++...+..++....+....+... |---.+...-.-.+...++++..|.+.||..|.+++..+++.--++..+++
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 3444455555666666677755555532 222233333344556678888899999999999988777665444333322
Q ss_pred hh--------h-------hHHHHHHHHHHHhcccc-ccccchhhhhhhcc------ccccccccchhhHHHHHHHHHHHH
Q 010273 130 LA--------P-------SFAVLIIGRLLAGVGIG-FGVMIAPLYIAEIS------PSIARGSLTSFPEIFINLGILLGY 187 (514)
Q Consensus 130 ~~--------~-------~~~~~~~~r~l~G~~~~-~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~g~ 187 (514)
.. + -+..+++.-.+.|.-.- +......++=.||. +++.+.+..+...-.--+..+++|
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaP 166 (432)
T PF06963_consen 87 ALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAP 166 (432)
T ss_pred HHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 01112222222222111 11112222334453 233344455555555566788899
Q ss_pred HHhhhcccCCCCccchhhHhhchHHHHHHHHH-Hhhc----cCChhHHHHcCCHHHHHHHHHHh-ccChhhHHHHHHHHH
Q 010273 188 ISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVI----PESPRWLVMQGRIDEARLVLSKT-NESVKEVEERLAEIQ 261 (514)
Q Consensus 188 ~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~----~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (514)
++.|. +.+..+.+...++.+...++..+. ++++ ...|. +..+++.++........ .++...........
T Consensus 167 l~vG~---l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (432)
T PF06963_consen 167 LFVGL---LMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESSSESSSDPSILKRL- 241 (432)
T ss_pred HHHHH---HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccccccccccccchhhHHHHH-
Confidence 99888 444457776666655555555444 3332 22232 11111111100000000 00000000000000
Q ss_pred HHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHH
Q 010273 262 VAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKT 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
.+.-.+....|+..++ .+.+.......++.+. ...+...+..|+...|.++... +..-....+.++
T Consensus 242 ------~~~~~~~~~~w~~Y~~------q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~~~i-gi~R~~gav~Gl 307 (432)
T PF06963_consen 242 ------WNPLRTIIRGWRTYFR------QPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSPSVI-GIFRGLGAVFGL 307 (432)
T ss_pred ------HHHHHHHhccHHHHHh------CHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCHHHH-HHHHHHHHHHHH
Confidence 0001111223333333 2222222222222222 2334556777888887666544 444455778899
Q ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCc-chhhHHHHHHHHHHHhhhccccccccceeeeeccCh
Q 010273 342 IFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG-QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPL 420 (514)
Q Consensus 342 ~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 420 (514)
.+.++..++.+|+|..+.=.++.....++..+-.........+ .......++......-.+.-+.--...-+..|..|+
T Consensus 308 ~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~ 387 (432)
T PF06963_consen 308 LGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE 387 (432)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence 9999999999999998887777776665555444444333322 122222222222222222223333445678899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 010273 421 RLRAQASALGAVGSRVSSGAIAMS 444 (514)
Q Consensus 421 ~~~~~~~g~~~~~~~~g~~~~~~~ 444 (514)
++||...|+-+...++.-.+.-.+
T Consensus 388 ~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 388 SERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888866554333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=120.46 Aligned_cols=144 Identities=21% Similarity=0.194 Sum_probs=122.8
Q ss_pred HhhhhhccccChh-HHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 010273 69 IIFIKEDLKITEV-QQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVG 147 (514)
Q Consensus 69 ~~~i~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 147 (514)
.+.+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456778999998 999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred ccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHH
Q 010273 148 IGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSV 214 (514)
Q Consensus 148 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 214 (514)
.+...+...+++.+.+|+++|++++++.+....+|.++++.+++.+.. ...++...|++.+.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHH
Confidence 998888899999999999999999999999999999888888776432 12355566665444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=102.67 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhhccceeeccchHHHhh-hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 292 LITGCGIQCFQQITGIDATVYYSPTIFK-GAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
.++...+..+..+...+......+.+-+ +.+ .+..+.++......+...+.++..|++.||+|.|+.+.++.++..+.
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~-ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFN-FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3333333333333333333333444444 344 44455666666677888888999999999999999998888887776
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS- 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~- 449 (514)
.+...+......+ + ...++....+.++. .+..+.....+++.+|+++||++.|+....+++|..+++.+...+.
T Consensus 114 ~~~~~~a~~~~~~-s---~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 114 CVWLGIAVQNPNT-P---FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred HHHHHHHHcccCC-C---HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6655543110001 1 11122222222222 2234556677889999999999999997777777766655554432
Q ss_pred ----hhhh-------------cCcEehhhHHHHHHHHHHhhhccccC
Q 010273 450 ----HAIT-------------VGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 450 ----~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
+..| ++...++...+.++..++.++..++.
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3233 33334455555555555555554443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=100.56 Aligned_cols=116 Identities=18% Similarity=0.063 Sum_probs=93.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhcc
Q 010273 325 GNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSV 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
....++.+...+++...+.++..|.++||+|||.++.++.+..++...+.+.... ...++..=..++.+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---------F~afv~aR~l~Gi~k- 135 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---------FAAFVLARFLGGIFK- 135 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhhcc-
Confidence 3456777778889999999999999999999999999999988887777766654 322333233444443
Q ss_pred ccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 405 GIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
+...+..++++|++++++|+.+++..++...+|-.+||.+.|++..
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3445677999999999999999999999999999999999999887
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=101.16 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=103.1
Q ss_pred chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLA 144 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 144 (514)
....|.+.++.|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+..+..+.+++.++..+.++..... .-++.
T Consensus 217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 3456666667899999999999999999999999999999999 577778888888888877777665433322 45678
Q ss_pred hccccccccchhhhhhhccc-cccccccchhhHHHHHHHHHHHHHHhhhccc
Q 010273 145 GVGIGFGVMIAPLYIAEISP-SIARGSLTSFPEIFINLGILLGYISNYAFSR 195 (514)
Q Consensus 145 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~ 195 (514)
|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777766554 5667888898888888888999999988654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=102.73 Aligned_cols=148 Identities=12% Similarity=0.129 Sum_probs=106.8
Q ss_pred HhhhhhccccChhHHHHHHHHHH-HHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH--
Q 010273 69 IIFIKEDLKITEVQQEVLVGILS-IISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM---TLA-PSFAVLIIGR-- 141 (514)
Q Consensus 69 ~~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~r-- 141 (514)
.+.+.+++|.++++++++.+... ++..++.+++|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.-
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34577789999999999987654 5689999999999999999998887777766654433 343 4556555544
Q ss_pred --HHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 142 --LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 142 --~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
+..|++.+...+....++.+.+|.+++ ++.+...++|..+++.+++. +.+..||+..|.+.++++++.+++
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~---l~~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGY---LVEAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHH
Confidence 455666666677777788888776654 45555566777666667777 445689999999988887776655
Q ss_pred Hhhc
Q 010273 220 LFVI 223 (514)
Q Consensus 220 ~~~~ 223 (514)
....
T Consensus 386 ~~~~ 389 (402)
T PRK11902 386 LWLM 389 (402)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-10 Score=101.29 Aligned_cols=150 Identities=11% Similarity=0.023 Sum_probs=125.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhc
Q 010273 324 KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFS 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
......++++....+..++..++.|.+.||+|+|..++++...+....+++.+... ...+++.=.+.+..+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---------y~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---------YPMLFVARSLQGVGS 173 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---------hHHHHHHHHHhhhhH
Confidence 44556788888899999999999999999999999999999999888888877654 334455555566666
Q ss_pred cccccccceeeeeccChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCC
Q 010273 404 VGIGPVCWVLSSEIFPLRL-RAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGK 482 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (514)
........+++++.+|.+. |++++|+...+..+|..++|.+.|.+++..|++.+|.++++++++...+.++.++.++.+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 6666677788999999775 799999999999999999999999999999999999999999999998877776655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-08 Score=96.27 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhh--------HH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLAPS--------FA 135 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~ 135 (514)
......++.+.+|.+.+....+...+....-+..+++|+++|+ +|+++.+.++.++..++.++.+++.. ..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 3445556777899999999999999999999999999999997 59999999999999999988876521 23
Q ss_pred HHHHHHHHHhccccccccchhhhhhhccccc---cccccchhhHHHHHHHHHHHHHHhhhcccC----CCCccchhhHhh
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPSI---ARGSLTSFPEIFINLGILLGYISNYAFSRL----PAHINWRVMLGV 208 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~----~~~~~Wr~~f~~ 208 (514)
..+++-.+..+|.|+.-|+..+...|.++++ +|...+.++..+.++|..+++++.+.+..- .++.+|...|.+
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 4667788889999999999999999999754 366788889999999999998888775421 123479999999
Q ss_pred chHHHHHHHHHHh
Q 010273 209 GILPSVFIALALF 221 (514)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (514)
.++..++..++..
T Consensus 167 ~~i~m~ia~lvf~ 179 (654)
T TIGR00926 167 PAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776665543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=100.73 Aligned_cols=169 Identities=12% Similarity=0.035 Sum_probs=132.1
Q ss_pred hhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 010273 55 SVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSF 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 134 (514)
.+-+.+|++ ++......-++-+.+...+|.+.+...+.-++.-.+..++.+|+|.|+.++++..++++=.++++++++.
T Consensus 234 ~~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~ 312 (412)
T PF01306_consen 234 AIYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP 312 (412)
T ss_dssp HHHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH
T ss_pred HHHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch
Confidence 344444544 3334444444445566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhccccccccccchhh-HHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 135 AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFP-EIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 135 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
+.+.+.+.+.|+-.+........++.+.+|+|-.++...+. +.+.++|..+.+.++|. +.++.|.+..|++.+.+.
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~---lyd~~G~~~tylimg~iv 389 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY---LYDRIGFQHTYLIMGLIV 389 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh---hHhhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777764 67788898888888888 445778998898876666
Q ss_pred HHHHHH-HhhccCCh
Q 010273 214 VFIALA-LFVIPESP 227 (514)
Q Consensus 214 ~~~~~~-~~~~~e~~ 227 (514)
++..++ .+.+++++
T Consensus 390 ~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 390 LPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHS--SS
T ss_pred HHHHHHheeeecCCC
Confidence 655554 55565544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=98.52 Aligned_cols=168 Identities=15% Similarity=0.230 Sum_probs=126.3
Q ss_pred hhhhhhcchhHhhhhhccc-cChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhHHH
Q 010273 59 GYDVGVMSGAIIFIKEDLK-ITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA-PSFAV 136 (514)
Q Consensus 59 ~~~~~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~ 136 (514)
+.....+....+..-+|.| .+....+.+.+...+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3344444555555556666 777788888888888888999999999999999999999999999988888887 55444
Q ss_pred HHH----HHHHHhccccccccchhhhhhhccccccccccchhhHHH-HHHHHHHHHHHhhhcccCCC---CccchhhHhh
Q 010273 137 LII----GRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIF-INLGILLGYISNYAFSRLPA---HINWRVMLGV 208 (514)
Q Consensus 137 ~~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~---~~~Wr~~f~~ 208 (514)
..+ ...++|+..+..+..+..++.+..|++.|+++++++.+. .++|..+|..++|.+.+... ...|...+.+
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 333 355699999999999999999999999999999998764 68999999999999554211 1235555666
Q ss_pred chHHHHHHHHH-HhhccCC
Q 010273 209 GILPSVFIALA-LFVIPES 226 (514)
Q Consensus 209 ~~~~~~~~~~~-~~~~~e~ 226 (514)
.+...++..++ +++++|+
T Consensus 380 ~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 380 FAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHhhccCC
Confidence 55555544444 4445543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=95.31 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHhccccccccchhhhhhhcccc
Q 010273 90 LSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA----VLIIGRLLAGVGIGFGVMIAPLYIAEISPS 165 (514)
Q Consensus 90 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 165 (514)
..+.-.-|.++.+.+.||+|||+.+..+.++++++.++.-.+.+-. .+..+|++. ++.+.+.+.|..|.||.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccch
Confidence 3456677899999999999999999999999999999887775432 334455544 44555778899999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccCCh
Q 010273 166 IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPESP 227 (514)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 227 (514)
+-|+...|.-....-+|.++.|+++-. .. .+--.+..+.+.+.++..+...++|-.+
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~-~e----~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMR-AE----LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHH-hc----cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999999999833 21 2334455556666666777777777444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-09 Score=100.34 Aligned_cols=155 Identities=8% Similarity=-0.096 Sum_probs=106.2
Q ss_pred eccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhH
Q 010273 310 TVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIA 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (514)
.....|.+.++.+. +..+.++......++..++.+..|++.||+|||+.+..+..+..++..++...... ++ .
T Consensus 22 ~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~---~~---~ 94 (410)
T TIGR00885 22 TNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI---MN---Y 94 (410)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh---cc---H
Confidence 33566777666554 45566777777889999999999999999999999999998888877665332211 01 1
Q ss_pred HHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 010273 390 LAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH------------------- 450 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~------------------- 450 (514)
..++......+.......+....+..+..|++++++..++.+....+|..++|.+.+.+..
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEEL 174 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHH
Confidence 1122222222233223334445666777888999999999999999999999998887642
Q ss_pred -------hhhcCcEehhhHHHHHHHHHH
Q 010273 451 -------AITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 451 -------~~g~~~~~~~~~~~~~~~~~~ 471 (514)
..+|+.+|++.+++.++..++
T Consensus 175 ~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 175 SAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235777787777766655444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-09 Score=97.66 Aligned_cols=155 Identities=25% Similarity=0.400 Sum_probs=129.0
Q ss_pred hhhhhcchhHhhhhhccccCh--hHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--HH
Q 010273 60 YDVGVMSGAIIFIKEDLKITE--VQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPS--FA 135 (514)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~ 135 (514)
.+........+.+..+++.+. ...++..+.+.++..+++++.|.+.||+|||+.+..+.....++.+++++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 466666777888888887766 58999999999999999999999999999999888888776777777777776 89
Q ss_pred HHHHHHHHHhccccccccchhhhhhhcccc-ccccccchhhHH-HHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPS-IARGSLTSFPEI-FINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ...+||+.|.......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888888 5888888898887776544 5568999666655544
Q ss_pred HH
Q 010273 214 VF 215 (514)
Q Consensus 214 ~~ 215 (514)
..
T Consensus 175 ~~ 176 (338)
T COG0477 175 LL 176 (338)
T ss_pred HH
Confidence 43
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=95.84 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred HHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHH
Q 010273 315 PTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILS 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+.+-++.+.++. +.+++...+.+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+....+ .. +. ++.
T Consensus 38 ~~i~~~~~LS~~-q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---~~--~~-ll~ 110 (417)
T COG2223 38 VFIKSDFGLSEG-QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---ST--WQ-LLV 110 (417)
T ss_pred hhhccccCCCHH-HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---ch--HH-HHH
Confidence 333345555544 555556667788889999999999999999999988888777777666655422 11 11 111
Q ss_pred HHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCcEehhhHHHHHHHHHH
Q 010273 395 VCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT---VGGTFFVFSLISALSVAF 471 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~ 471 (514)
+..+. ....+.+.+...++++.||++++|.++|+.. .+|+|..+...+.+.+....+ |+....+.....++..+.
T Consensus 111 ~gll~-G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 111 IGLLL-GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HHHHH-hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11112 2233444567788999999999999999998 999999999999988888888 777777777777777777
Q ss_pred hhhccccC
Q 010273 472 VYKCVPET 479 (514)
Q Consensus 472 ~~~~~~~~ 479 (514)
.++..++.
T Consensus 189 ~~~~~~d~ 196 (417)
T COG2223 189 AWLGMNDV 196 (417)
T ss_pred HHHHhCCC
Confidence 67665443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=100.19 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=96.8
Q ss_pred chhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhh----hhhHHHH-HHHHHHHHHHHHHHHhhhhH------
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDV----LGRKWTI-ALAAIVFQAGAAIMTLAPSF------ 134 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~~------ 134 (514)
-...++...++|++....+.+--..-+...+.+++.|..+|| |||||.+ ..+.+..+++.++.+++.++
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 345566777889988888888778888888999999999995 7876554 55556667777788877543
Q ss_pred -----------HHHHHHHHHHhccccccccchhhhhhhccccccccc-cchhhHHHHHHHHHHHHHHhhh
Q 010273 135 -----------AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGS-LTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 135 -----------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
..++++-.+.=++.-.....+.+++.|...++++.+ +.+++....++|+++|..+++.
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 244455555556666677788999999997777666 9999999999999998877764
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=95.82 Aligned_cols=137 Identities=9% Similarity=0.003 Sum_probs=104.4
Q ss_pred ccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHH
Q 010273 311 VYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIAL 390 (514)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+..|.+.++.+.+..+..+.+...+..+..+..+.+|+++||+|.|+.+..+.+...+..+++++... ..
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---------l~ 116 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---------VW 116 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 334555555666665553677777788999999999999999999999999998888888888777544 33
Q ss_pred HHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEe
Q 010273 391 AILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTF 458 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 458 (514)
.+.+.-++.+.+..... ....++...+|+++|+++.|+.+....+|.++++++.+. ....||+...
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 33333344444444444 666888899999999999999999999999999999998 5566776543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=99.70 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=95.7
Q ss_pred chhHhhhhhccccChhHHHHHHHHHH-HHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----------hh
Q 010273 66 SGAIIFIKEDLKITEVQQEVLVGILS-IISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA-----------PS 133 (514)
Q Consensus 66 ~~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------~~ 133 (514)
....|...+++|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++
T Consensus 229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 34455444559999999998888766 5778999999999999999999999988888877665543 35
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHH
Q 010273 134 FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFIN 180 (514)
Q Consensus 134 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (514)
.+.+....++.+++.+...+...+++.|.+|+++|++.+++.++..+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 67788889999999999999999999999999999999999877654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-09 Score=114.59 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=117.8
Q ss_pred hHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------------
Q 010273 68 AII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--------------- 131 (514)
Q Consensus 68 ~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------------- 131 (514)
..| ++.+.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 344 4566789999999999999999999999999999999888777777766666666555443
Q ss_pred -----hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhH
Q 010273 132 -----PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVML 206 (514)
Q Consensus 132 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f 206 (514)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.. ...++...+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~--~~~~~~~~~ 404 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA--LGFSIPWII 404 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHH
Confidence 6778888889999999999999999999999999999999999999999999999998888542 234566666
Q ss_pred hhchHHHH
Q 010273 207 GVGILPSV 214 (514)
Q Consensus 207 ~~~~~~~~ 214 (514)
++.++..+
T Consensus 405 ~~~~~~~~ 412 (1140)
T PRK06814 405 LFIALANL 412 (1140)
T ss_pred HHHHHHHH
Confidence 65444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=106.12 Aligned_cols=141 Identities=10% Similarity=-0.098 Sum_probs=105.1
Q ss_pred eccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCc-----
Q 010273 310 TVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG----- 384 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 384 (514)
...-++.+-++.+.++. ..+++...+.++..++.++.+++.||.+||+.+.++.++.+++.++..+........
T Consensus 52 ~~~~l~~iek~F~lss~-~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTS-SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHhhchhhhhhhCCCCC-cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 33344555555555544 456666668899999999999999999999999999999999988876653211000
Q ss_pred -----------------------------------c--hhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 385 -----------------------------------Q--LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 385 -----------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
. ...+..+++.-++.+++.....+...+++.|.+|++.|+.+.
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 0 112333444555666666677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
|+.+....+|..+++.+.+.+.+.
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-09 Score=99.01 Aligned_cols=172 Identities=9% Similarity=0.025 Sum_probs=108.7
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCchhhhhh-hHHHHHHHHHHHHHHHHh
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILID----KVGRKPLLYVS-TIGMTICLLSLSLSLTFL 381 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~ 381 (514)
+.....+.+.|++..+. +....+.......+.+++..++.|+++| |+|||+.++.. .+...++..++.......
T Consensus 20 ~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 20 WALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 44455677778888776 4456666667788999999999999999 59999988765 444444444444332211
Q ss_pred c-------Cc-c-hhhHHHHHHHHHHHhhhccccccccceeeeeccChhhh--hHHHHHHHHHHHHHHHHHHHHHHHH--
Q 010273 382 G-------NG-Q-LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLR--AQASALGAVGSRVSSGAIAMSFLSV-- 448 (514)
Q Consensus 382 ~-------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~~~~-- 448 (514)
. .. . ...+..++.... .-+......+...+++.|..|+++| +.+.++.+...++|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~l-ld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWI-LDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0 00 0 000111111111 1222222334456889999998765 6799999999999999998888754
Q ss_pred Hhhh-------------hcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 449 SHAI-------------TVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 449 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
.+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2211 3445677777777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.3e-08 Score=88.83 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcc
Q 010273 84 EVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS 163 (514)
Q Consensus 84 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 163 (514)
+.+.-+-.+...+..+.+.+..+|+..+.=.....+++.++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33444555666777777888899987655566667788889999999999999999999999999988776666643 55
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccCC
Q 010273 164 PSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPES 226 (514)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~ 226 (514)
++ ..++-+..+.+.+.++|+..-..+.. -..+-|..+.+.....++..+. ++.+|.+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 43 35677777777777777765544332 1123466777655555444444 4445543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=96.91 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=101.3
Q ss_pred hHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHH
Q 010273 68 AII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVLIIGRLLA 144 (514)
Q Consensus 68 ~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~ 144 (514)
..| .+++.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.
T Consensus 250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIA 329 (448)
T ss_pred hheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 444 34556777665555555555677888999999999999999999999999888887777653 677777788899
Q ss_pred hccccccccchhhhhhhccccc-------cccccchhhHHHHHHHHHHHHHHhhhc
Q 010273 145 GVGIGFGVMIAPLYIAEISPSI-------ARGSLTSFPEIFINLGILLGYISNYAF 193 (514)
Q Consensus 145 G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~~ 193 (514)
|+|.+...+...++.+|..|.+ ++|...+..+....+|..+|+.+.+.+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 358888999999999999988887764
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=96.11 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=122.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhh
Q 010273 323 IKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFF 402 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
..+...-+++......+.+++.+.+|++.||+|.|+++..+.++.+++.++......... + .++..-.+.++.
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~------~-~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF------Y-LLLVLRFLQGLG 141 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc------h-hhHHHHHHhHHH
Confidence 344555566666688999999999999999999999999999999988888877765321 2 334444555666
Q ss_pred ccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCcEehhhHHHHHHHHHHhhhcccc
Q 010273 403 SVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA-ITVGGTFFVFSLISALSVAFVYKCVPE 478 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (514)
.....|....+...-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+.+..+
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666788889999999999999999999999999999999999999998 999999999999998888876666543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=97.59 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=110.4
Q ss_pred hhhhcchhHhhhhhc-cccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHH
Q 010273 61 DVGVMSGAIIFIKED-LKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVL 137 (514)
Q Consensus 61 ~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~ 137 (514)
.........++..++ +|.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+
T Consensus 240 ~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (428)
T PF13347_consen 240 AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLV 318 (428)
T ss_pred hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444455554444 4544 6788888899999999999999999999999999999999999999998886 99999
Q ss_pred HHHHHHHhccccccccchhhhhhhcccc-------ccccccchhhHHHHHHHHHHHHHHhhhc
Q 010273 138 IIGRLLAGVGIGFGVMIAPLYIAEISPS-------IARGSLTSFPEIFINLGILLGYISNYAF 193 (514)
Q Consensus 138 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~~ 193 (514)
++.-++.|++.+...+...++++|..+. ++.|...+.......+|..+++.+.+.+
T Consensus 319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998873 3347788888888888888888777764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=86.25 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=112.9
Q ss_pred hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHhcccc
Q 010273 71 FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAG-AAIMTLAPSFAVLIIGRLLAGVGIG 149 (514)
Q Consensus 71 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~~ 149 (514)
..++.+|+|+...+.+.+......++.+++.|.++||+|++.+.+.+..+..+. -.+..| +++.=.++..+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 578999999999999999999999999999999999999998777766555443 223332 34444566778888877
Q ss_pred ccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh-chHHHHHHHHHHhhc
Q 010273 150 FGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV-GILPSVFIALALFVI 223 (514)
Q Consensus 150 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~-~~~~~~~~~~~~~~~ 223 (514)
.........++...|+++.|++.+..+...++|-.+-|++++++.+-...+.|--.|.+ .+..++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66555677888889999999999999999999999999999996543333456555554 444444444444433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-09 Score=102.46 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=100.0
Q ss_pred eeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchh
Q 010273 308 DATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLG 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (514)
+.+..+.+.+.++.+.+..+ .+...... .......+..|++.||+|+|+++.++.++..++.++..+........+
T Consensus 44 y~fsv~s~~L~~~lgls~~~-l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s-- 119 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRD-LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS-- 119 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHH-HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc--
Confidence 34455667766666655544 33333322 223345667899999999999999999999988887776422100011
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHH
Q 010273 388 IALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 467 (514)
.+.. .....+.+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...+++.+++.++
T Consensus 120 ~~~l-~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 120 VVRL-SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALV 196 (591)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 1211 112222222222222333455677786 789999999999999999875555554443 2455667777777777
Q ss_pred HHHHhhhccccC
Q 010273 468 SVAFVYKCVPET 479 (514)
Q Consensus 468 ~~~~~~~~~~~~ 479 (514)
..++...+++..
T Consensus 197 v~ll~~~~vr~p 208 (591)
T PTZ00207 197 VGILAIVFMRLP 208 (591)
T ss_pred HHHHHHhheeCC
Confidence 666655555433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=70.56 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=75.8
Q ss_pred hhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010273 58 LGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVL 137 (514)
Q Consensus 58 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (514)
.++.+..+.|.+|.+++|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46688899999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred H
Q 010273 138 I 138 (514)
Q Consensus 138 ~ 138 (514)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=96.33 Aligned_cols=142 Identities=12% Similarity=-0.088 Sum_probs=109.3
Q ss_pred hhh-hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc
Q 010273 70 IFI-KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGI 148 (514)
Q Consensus 70 ~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 148 (514)
+++ ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.+ .+..-++.|++.
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~ 361 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFM 361 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence 343 567899999999999999999999999999999999999999999888877777666665543 345667889999
Q ss_pred cccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhhchHHHHHHH
Q 010273 149 GFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WRVMLGVGILPSVFIA 217 (514)
Q Consensus 149 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~~~ 217 (514)
+..+|...+...+..++ +.+.+.++..+. .+|..++|.+.+.+. +..| -|..|++..+..+...
T Consensus 362 ~~i~P~~~s~a~~~~~~-~~~~as~l~~~~-~~g~~~~~~i~G~l~---~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 362 SIQYPTIFSLGIKNLGQ-DTKYGSSFIVMT-IIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHHcccch-hhccchhHHhHH-hccchHHHHHHHHHH---HhccchHHHHHHHHHHHHHHH
Confidence 99999999999998765 467777777644 356677777777743 3445 6777776544444333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-06 Score=78.80 Aligned_cols=127 Identities=11% Similarity=-0.010 Sum_probs=97.2
Q ss_pred hHhhhhhcccc-----ChhHHHHHHHHHHHHHHHH-HHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh----h-----
Q 010273 68 AIIFIKEDLKI-----TEVQQEVLVGILSIISLFG-SLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA----P----- 132 (514)
Q Consensus 68 ~~~~i~~~~~~-----s~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~----- 132 (514)
.+-.++|.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++-.....+.+..+++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 45557777766 3367889998887777666 8999999999999999998888888877777665 1
Q ss_pred ----------------------hHHHHHHHHHHHhcccccccc-chhhhhhhccccccccccchhhHHHHHHHHHHHHHH
Q 010273 133 ----------------------SFAVLIIGRLLAGVGIGFGVM-IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYIS 189 (514)
Q Consensus 133 ----------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 189 (514)
+.|...+.-+...+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444555455554 668889999999999999999999999999999988
Q ss_pred hhhcc
Q 010273 190 NYAFS 194 (514)
Q Consensus 190 ~~~~~ 194 (514)
...+.
T Consensus 185 ~~~~~ 189 (472)
T TIGR00769 185 IKYFS 189 (472)
T ss_pred HHHHH
Confidence 77765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=102.15 Aligned_cols=144 Identities=21% Similarity=0.145 Sum_probs=112.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhc
Q 010273 324 KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFS 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.+.....+......++..+|.++.|.++||+|||+++..+.++..++.+...+... ...+...-++.+++.
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---------~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---------YWMFLIFRFLSGFFG 185 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHhhc
Confidence 34445555666688999999999999999999999999999999888877766655 444555556666777
Q ss_pred cccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 404 VGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
.+...+.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|++.+++......+..+. ++..+|.+
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 77777888999999999999999999 88888888888988888877 7777777777776666555 44444543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-08 Score=94.36 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=99.2
Q ss_pred hcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHH
Q 010273 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL-----APSFAVLI 138 (514)
Q Consensus 64 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 138 (514)
......++..+...-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.++
T Consensus 249 ~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
T PRK10429 249 IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIV 328 (473)
T ss_pred HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH
Confidence 3333444444444335667778888777899999999999999999999999888877766655432 34567777
Q ss_pred HHHHHHhccccccccchhhhhhhcccc-------ccccccchhhHHHHHHHHHHHHHHhhhcc
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAEISPS-------IARGSLTSFPEIFINLGILLGYISNYAFS 194 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~~~ 194 (514)
+.-++.|++.+...+...++++|..+. ++.|..++......-+|..+++.+.+.+.
T Consensus 329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999998652 33355788888888889988888877753
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=100.30 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=103.2
Q ss_pred cchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 312 YYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.-++.+.++.|.++. ..++.....++..+..++.|.++|.+|||+.++.+.++..++.++....... -.
T Consensus 65 ~~l~~I~~diG~~~~--~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~---------~~ 133 (599)
T PF06609_consen 65 SILPYINADIGGSDN--WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM---------NT 133 (599)
T ss_pred HHHHHHHHhcCCCcc--chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH---------HH
Confidence 345666667766543 3445555778888999999999999999999999999988888877654432 11
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHH
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAF 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 471 (514)
++....+.+.. .+........++|..|.+.|..+.++.....-....+++.+...+..+.+|++.|++.++...++.+.
T Consensus 134 ~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 134 FIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 22222222222 22223444557999999999888777665544444566777666666678999998888877776665
Q ss_pred hhhcc
Q 010273 472 VYKCV 476 (514)
Q Consensus 472 ~~~~~ 476 (514)
++++.
T Consensus 213 ~~~fY 217 (599)
T PF06609_consen 213 IFFFY 217 (599)
T ss_pred HHHHh
Confidence 54443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=94.68 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhccccccccchh
Q 010273 79 TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTL--APSFAVLIIGRLLAGVGIGFGVMIAP 156 (514)
Q Consensus 79 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~ 156 (514)
+++..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...
T Consensus 262 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 341 (444)
T PRK09669 262 RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQW 341 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677888889999999999999999999888776654443332 35777788888999999999999999
Q ss_pred hhhhhccccc-------cccccchhhHHHHHHHHHHHHHHhhhcc
Q 010273 157 LYIAEISPSI-------ARGSLTSFPEIFINLGILLGYISNYAFS 194 (514)
Q Consensus 157 ~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~~~ 194 (514)
++++|..+.+ +.|...+.......+|..+|+.+++.+.
T Consensus 342 am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 342 SMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987632 2345567788888899999988887754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=89.42 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccc
Q 010273 326 NNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVG 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
....+.....+.++.+++.+.++.+.||++..+.+....++..+..++-....+ ...+++.-++.+.+..+
T Consensus 80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---------~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---------FPGLIALRFLLGLFESG 150 (495)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhcc
Confidence 344555666688999999999999999999555554444333333222222111 34455556667778888
Q ss_pred cccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhcCcEehhhHHHHHHHHHHhhhccccC
Q 010273 406 IGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVS------HAITVGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
..|....++...+.+++|+..+|+.++...+|+++++.+...+. ...||++.|++-+++.++..+++++++|+.
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 88988899999999999999999999999999999999887753 356899999999999999999988888876
Q ss_pred CC
Q 010273 480 KG 481 (514)
Q Consensus 480 ~~ 481 (514)
..
T Consensus 231 P~ 232 (495)
T KOG2533|consen 231 PS 232 (495)
T ss_pred hh
Confidence 54
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-08 Score=93.74 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=121.1
Q ss_pred hhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHH
Q 010273 73 KEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA----------PSFAVLIIGRL 142 (514)
Q Consensus 73 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~ 142 (514)
.+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35789999999999999999999999999999999999999999999999988664321 33445556678
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCC----CccchhhHhh-chHHHHHHH
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPA----HINWRVMLGV-GILPSVFIA 217 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~----~~~Wr~~f~~-~~~~~~~~~ 217 (514)
+.+++.+..+.....++.+..|+++++...++..+..++|..+++.+++.+.+... +++.++...+ ..+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 88999888899999999999999999999999999999999999998888654221 2333444333 344444444
Q ss_pred HHHhhccC
Q 010273 218 LALFVIPE 225 (514)
Q Consensus 218 ~~~~~~~e 225 (514)
.+.+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 45557885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=80.10 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=75.5
Q ss_pred hcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010273 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLL 143 (514)
Q Consensus 64 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 143 (514)
..+|.+-.+-+.++....++|.+.-..+-...+...+.|.++|+-|||+.-+.-.+.+.++++ +-.++.|-.++++|.+
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~L 133 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVL 133 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhh
Confidence 345666677888899899999888887778888999999999999999876554444444332 3346889999999999
Q ss_pred Hhccccccccchhhh-hhhcc
Q 010273 144 AGVGIGFGVMIAPLY-IAEIS 163 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~-i~~~~ 163 (514)
-|+..+..+.+--++ +.|..
T Consensus 134 GGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 999999887776554 45543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.6e-06 Score=80.58 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=121.4
Q ss_pred hcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhhh---------
Q 010273 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAPS--------- 133 (514)
Q Consensus 64 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~--------- 133 (514)
.....+.++.+++|.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++.++..++..
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 346778889999999888888888888888889999999999986 8999999999998888666554321
Q ss_pred ----------------HHHHHHHHHHHhccccccccchhhhhhhccc---ccc---ccccchhhHHHHHHHHHHHHHHhh
Q 010273 134 ----------------FAVLIIGRLLAGVGIGFGVMIAPLYIAEISP---SIA---RGSLTSFPEIFINLGILLGYISNY 191 (514)
Q Consensus 134 ----------------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~~g~~~~~ 191 (514)
...+..+.-+..+|.|+.-|...++-+|-++ +++ +...+.++....++|..++..+..
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 1256667778889999999999999999998 322 236788888889999888877666
Q ss_pred hcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 192 AFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 192 ~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
. .-++.+|.+.|.+..+..++.+++++
T Consensus 216 y---iq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 216 Y---IQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred h---hhhcccceeeccHHHHHHHHHHHHHH
Confidence 5 33567999999987766665555433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.9e-08 Score=89.46 Aligned_cols=167 Identities=14% Similarity=0.016 Sum_probs=115.4
Q ss_pred HhhhccceeeccchHHHhhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHH
Q 010273 301 FQQITGIDATVYYSPTIFKGA-----GIKGNNELLAATVAVGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSL 374 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~ 374 (514)
++--++++++...+..|+... +.++.++.++... +....-+..+++||++||+ |+|+.+..+.+++.++.+++
T Consensus 31 ~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~-y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L 109 (498)
T COG3104 31 LWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSA-YGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVL 109 (498)
T ss_pred HHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHH-HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 334444555555555555432 2555555555444 5455556789999999995 99999999999999999888
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 375 SLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL--RAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
..... .. ...+..............=|....++.|++|++. |-.++++..+..++|+.++|.+.+++.++.
T Consensus 110 ~~~~~---~~----~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~ 182 (498)
T COG3104 110 AISSV---SG----PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY 182 (498)
T ss_pred hcccc---cc----ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence 76530 00 1112222222224444455677788889988643 667888888999999999999999999999
Q ss_pred hcCcEehhhHHHHHHHHHHhhhc
Q 010273 453 TVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
||+..|...++-..++.+..+..
T Consensus 183 g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 183 GWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988888888887775544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-07 Score=91.54 Aligned_cols=139 Identities=15% Similarity=0.033 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccc
Q 010273 330 LAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPV 409 (514)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (514)
+++.....+++.++.++.|+++|++|||+.+..+.+...++.++...... ...+...-.+.++...+...+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---------~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---------WYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhccchhhhhhc
Confidence 56677788999999999999999999999999999999999888887764 333333333344444444456
Q ss_pred cceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCcEehhhHHHHHHHHHHhhhccccC
Q 010273 410 CWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI--TVGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
...+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||.
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 67889999999999999999988888777666 5555555443 6776666666666665555 5666654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-06 Score=76.62 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=128.3
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHH
Q 010273 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALA 117 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~ 117 (514)
++.+..|.+.....+.++. ..+.-.-+|.+..|-|+|..+.|++.+...+.....++....+++|. .+|+..+..
T Consensus 205 w~~~~aW~vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~ 280 (395)
T COG2807 205 WRSPLAWQVTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA 280 (395)
T ss_pred ccCchhHHHHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3444566665555554443 33444567889999999999999999999999999999999999975 578888888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcccccc-ccccchhhHHHHHHHHHHHHHHhhhcccC
Q 010273 118 AIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIA-RGSLTSFPEIFINLGILLGYISNYAFSRL 196 (514)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 196 (514)
.+++.++.+.+.+.+.-..+.- -++.|+|.|..+|.+..++.+..+..+ -++-.++.+....+=..+||.+.|++.+.
T Consensus 281 ~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 281 LLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence 8888888888877764433333 489999999999999999999876544 34444555554444456678888887653
Q ss_pred CCCccchhhHhhchHHHHHHHHH
Q 010273 197 PAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 197 ~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
..+|+...+......+...+.
T Consensus 360 --~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 360 --TGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred --cCChHHHHHHHHHHHHHHHHH
Confidence 358998887766666555554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-06 Score=77.75 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=102.1
Q ss_pred hhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHH
Q 010273 61 DVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVL 137 (514)
Q Consensus 61 ~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~ 137 (514)
..+..+....+ ..--+|-++.+..+.......+..++.+++.++++|+|+|+++.++.+++.++.++.-+.+ +.+.+
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~ 330 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Confidence 33444444443 4445666677777888888888888899999999999999999999999999999988875 78888
Q ss_pred HHHHHHHhccccccccchhhhhhhccccc-------cccccchhhHHHHHHHHHHHHHHhhh
Q 010273 138 IIGRLLAGVGIGFGVMIAPLYIAEISPSI-------ARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 138 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
++..++.+++.+...+...++++|..+-. .-|...+......=+|..++..+.++
T Consensus 331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877532 22555666666666677776655444
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-06 Score=74.02 Aligned_cols=353 Identities=12% Similarity=0.060 Sum_probs=168.7
Q ss_pred HhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhh-----hhhhHHH-HHHHHHHHHHHHH
Q 010273 53 LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD-----VLGRKWT-IALAAIVFQAGAA 126 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~-~~~~~~~~~~~~~ 126 (514)
+.+...+.-.+..+ .+|.+.+.-|.|.++.+...-++ .. ..--+.|.++.| |+||||. ++-+..+.+....
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml 114 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML 114 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence 33455666777777 89988888888887776543222 11 233567889999 9998763 3333344443333
Q ss_pred HHHhh-----------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc
Q 010273 127 IMTLA-----------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR 195 (514)
Q Consensus 127 ~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~ 195 (514)
+.+.. ++...+....++.-+.++.--.+.-.+.-....+++-|.+..-...+.+.|..++..+--.+..
T Consensus 115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s 194 (510)
T KOG3574|consen 115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALES 194 (510)
T ss_pred HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecC
Confidence 33322 3333343344555555555555556666667778887766665555555555554332211110
Q ss_pred --CCC--Cccch---------hhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHH
Q 010273 196 --LPA--HINWR---------VMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQV 262 (514)
Q Consensus 196 --~~~--~~~Wr---------~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
+.. ..+|. ...++.+...++.-.+..+..+++.. + ..+
T Consensus 195 ~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~--------~---------------------~~~ 245 (510)
T KOG3574|consen 195 PDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE--------S---------------------VDE 245 (510)
T ss_pred hhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch--------h---------------------hhh
Confidence 000 12333 12233444444444444444333310 0 000
Q ss_pred HhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHH
Q 010273 263 AAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTI 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+ ........-...++.++. +..+....+ ....-.++.+.....+.-+-+.|...+..+.+. +..++
T Consensus 246 e---~~~~i~~~yk~l~~vLkl-k~v~~la~i-----~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~-----v~~~p 311 (510)
T KOG3574|consen 246 E---LELGIHESYKLLRDVLKL-KSVRWLAGI-----LLTGKLGFQAADALTSLKLLEHGVPKEELALIA-----VPLVP 311 (510)
T ss_pred h---hhcCHHHHHHHHHHHHcC-ccHHHHHHH-----HHHHHHHhhhhhhccchHHHHcCCChhHheeee-----eehhh
Confidence 0 000111111233444442 222222111 111222222333445556667777666543332 44445
Q ss_pred HHHHHHHHHhhcC--Cchh------hhhhhHHHHHHHHHHHHHHHHhcCc----chhhHHHHHHHHHHHhhhcccccccc
Q 010273 343 FILIAIILIDKVG--RKPL------LYVSTIGMTICLLSLSLSLTFLGNG----QLGIALAILSVCGNVAFFSVGIGPVC 410 (514)
Q Consensus 343 ~~~~~g~l~d~~~--~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (514)
..++.++..-|+. .|+. +..-.. ......++........+. ........+..-.+...+....+...
T Consensus 312 lqI~l~~~~gk~ta~~~pl~~~lka~~~R~~-~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~ 390 (510)
T KOG3574|consen 312 LQIALPLYIGKWTAGPRPLNVFLKAVPYRLG-GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSG 390 (510)
T ss_pred HHHhhhhhheeecCCCCcchHHHHhhhHHHH-HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHH
Confidence 5555555555542 2221 111111 222222222222222221 11111222211222222322333344
Q ss_pred ceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010273 411 WVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAI 452 (514)
Q Consensus 411 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 452 (514)
++..+.+.+|...|+.+.+.|+..++|+---..+...+.|..
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 566778889999999999999999999877667777776644
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00019 Score=66.55 Aligned_cols=181 Identities=10% Similarity=-0.025 Sum_probs=88.4
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHH
Q 010273 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAA 118 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 118 (514)
..+...+.+.++..++... ..+.+..+.++..+++--++. .......+.+...+..++...+--+...|.-..++.
T Consensus 14 d~~~~v~~i~~llGiG~Ll---pWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~ 89 (406)
T KOG1479|consen 14 DGYNLVYLIFLLLGIGTLL---PWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGY 89 (406)
T ss_pred cccccHHHHHHHHhccccc---chHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666555 666777777777777654443 344444455555555555554444443322222222
Q ss_pred HHHH---HHHHHHHhh---------hhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHH
Q 010273 119 IVFQ---AGAAIMTLA---------PSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLG 186 (514)
Q Consensus 119 ~~~~---~~~~~~~~~---------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 186 (514)
.++. +..+.+.++ ..|+..++.-.+.+++.|..........++ +|++.-.-.+ .+.+++.++.
T Consensus 90 ~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~ 164 (406)
T KOG1479|consen 90 LLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLT 164 (406)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHH
Confidence 2221 122222222 345666677788888888776666666555 4555432222 2233332222
Q ss_pred HHHhhhcccCCCC--ccchhhHhhchHHHHHHHHHHhhccCChh
Q 010273 187 YISNYAFSRLPAH--INWRVMLGVGILPSVFIALALFVIPESPR 228 (514)
Q Consensus 187 ~~~~~~~~~~~~~--~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~ 228 (514)
.++.-......++ .+=...|.+..+..+++.+.+..+|..|-
T Consensus 165 Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 165 SLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 2221111111111 12223344556666666666667777663
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-07 Score=88.58 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=130.3
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc
Q 010273 72 IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFG 151 (514)
Q Consensus 72 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 151 (514)
-.+|++..+...|.....-..+-.+.-++.+++..|+|+-+++..++.+..+=.+..++.+|.|+.+...+++|+..+..
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 45677777778887777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhccccccccccchhhH-HHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhc
Q 010273 152 VMIAPLYIAEISPSIARGSLTSFPE-IFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVI 223 (514)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 223 (514)
+.+..++++...||+-|..+.++.. ...++|--+|.++|+. +.+.++=|..|.+.++.+++.++....+
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~---~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF---VVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh---hheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999885 4467888899999998 5667788999988887777766654443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-06 Score=66.45 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=95.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhh
Q 010273 78 ITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPL 157 (514)
Q Consensus 78 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 157 (514)
+++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+++.+-.... +-++.+.++.+-.+.|++.+..+.....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 333333345556677788888999999999999999999999998655544 4577889999999999999999999999
Q ss_pred hhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 158 YIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
++.+..++++|++-.+++......+.++|.++..+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888777655
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-07 Score=85.44 Aligned_cols=115 Identities=21% Similarity=0.038 Sum_probs=82.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhc
Q 010273 324 KGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFS 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.++...+.......++.++|.++.|++.||+|||++.-..++++.++.++..+... .+........+.+.=...++..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~--~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG--TTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC--CCCCcchhhHHHHHHHHhhccc
Confidence 45566677777788999999999999999999999999888888887764443322 2222222333334444555666
Q ss_pred cccccccceeeeeccChhhhhHHHHHHHHHHHHHHHH
Q 010273 404 VGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGA 440 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 440 (514)
.+=+|...++++|....+.||+-.+.....+..|...
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 6778999999999998899998877765555544433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-06 Score=76.17 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=124.5
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSD-VLGRKWTIALAAIVFQAGAAIMTLA---PSFAVLIIGRLL 143 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l 143 (514)
.-|+=.+-||+|..+..-+.+.+..|..++-...|++.. |.++|+.-.+++....++..+..++ .+.+.+...-++
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l 310 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL 310 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 344556678999999999999999999999999999877 6788888888888887776665444 678899999999
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCC-------CCccchhhHhhchHHHHHH
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLP-------AHINWRVMLGVGILPSVFI 216 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-------~~~~Wr~~f~~~~~~~~~~ 216 (514)
.|++.|.......+...+..++++.|.++|.++....++..+|..+++.+.++. ...+|-.+|.+.++..++.
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988865532 2245667777766665555
Q ss_pred HHH
Q 010273 217 ALA 219 (514)
Q Consensus 217 ~~~ 219 (514)
+.+
T Consensus 391 ~~l 393 (403)
T PF03209_consen 391 LVL 393 (403)
T ss_pred HHH
Confidence 444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-09 Score=104.79 Aligned_cols=145 Identities=21% Similarity=0.064 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccc
Q 010273 328 ELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
..........++.++|.++.|+++||+|||+.+..+.++..++.++..+.... .. ...+...-.+.++...+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~-~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NN-FWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----cc-ccccccccccccccccccc
Confidence 34555666789999999999999999999999999999888888777766521 00 2223333344455555566
Q ss_pred cccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcCcEehhhHHHHHHHHHHhhhccccC
Q 010273 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA---ITVGGTFFVFSLISALSVAFVYKCVPET 479 (514)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (514)
+....++.|..|++.|+...++.+....+|..++..+.-...+. .+|+..+.+.++..++..+. ..+.||.
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pES 194 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 78889999999999999999998888888777666554333222 34666666665555544433 4556665
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=74.82 Aligned_cols=145 Identities=16% Similarity=0.032 Sum_probs=93.8
Q ss_pred hhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHh
Q 010273 302 QQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFL 381 (514)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 381 (514)
......+.+..|.|..-++.+.+.. +...+.....++..+ .+..|.+.|++|.+.++.++.+...++...+.......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~-~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQS-QLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHH-HHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3344556677788887776665554 444555556677766 58889999999999999999999888888776654422
Q ss_pred cCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 382 GNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
.. ....+...+.. ...+...............+.+| ++||++.|+.-....+++++-..+...+.+.
T Consensus 91 i~-~~~~~~~~~~~-~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 91 IP-SLPVWLMCLFL-FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred cC-ccchHHHHHHH-HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 21 12222222222 12212111112222233446777 6899999999999999998888888777655
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=77.61 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=118.0
Q ss_pred hHhhhh-hccccChhHHH-HHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 010273 68 AIIFIK-EDLKITEVQQE-VLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAG 145 (514)
Q Consensus 68 ~~~~i~-~~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 145 (514)
..|++. .+.|+|..++. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.....-++.-+.++.+.+=+.-++.|
T Consensus 27 ~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG 106 (433)
T KOG3810|consen 27 LTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYG 106 (433)
T ss_pred cchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcC
Confidence 444444 56677776654 2333444555666667778999999999999988888888888889999999999999999
Q ss_pred ccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhhccC
Q 010273 146 VGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
...+ ...+-++++-+..+++++.++.+...+..-.|...|..++-.+... +..+....-++......+..++.+++|.
T Consensus 107 ~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 107 PATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred hHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 9877 5567888999999999999999999888888888887777664421 2234444445555555555666778887
Q ss_pred ChhHHH
Q 010273 226 SPRWLV 231 (514)
Q Consensus 226 ~~~~~~ 231 (514)
.+|-+.
T Consensus 185 v~rSl~ 190 (433)
T KOG3810|consen 185 VKRSLY 190 (433)
T ss_pred Cchhhh
Confidence 765443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=77.70 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccccccchh
Q 010273 79 TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP--SFAVLIIGRLLAGVGIGFGVMIAP 156 (514)
Q Consensus 79 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~ 156 (514)
++...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888889999999999999999999988766555544444433332 233344555667887777777667
Q ss_pred hhhhhcccc-------ccccccchhhHHHHHHHHHHHHHHhhhc
Q 010273 157 LYIAEISPS-------IARGSLTSFPEIFINLGILLGYISNYAF 193 (514)
Q Consensus 157 ~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~~ 193 (514)
+++.|..+. ++.|..++.......+|..+|+.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877652 2234445666677777887777766654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=77.36 Aligned_cols=138 Identities=17% Similarity=0.109 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeee
Q 010273 336 VGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSS 415 (514)
Q Consensus 336 ~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (514)
.++..++.++..|.++||+|||..+....+...+...++.+..+ +..+ .....+.+ ........++++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~---------~~~~--~~~l~g~~-~~~~s~~~a~va 138 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGY---------WFFL--LLGLSGGF-SAIFSVGFAYVA 138 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH---------HHhh--hcccccch-hhhhhhhhhhee
Confidence 36778888999999999999999988887777766666554431 2211 22222222 233346678999
Q ss_pred eccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHH
Q 010273 416 EIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLE 485 (514)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (514)
+....+.|....|+.+.....+..++|...+.+.+..|+...+.+..+..++..+...+.+||+..++.+
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999998899999999999988888888887655443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=58.80 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=54.9
Q ss_pred hhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHH
Q 010273 57 LLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVF 121 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (514)
+.....+.+.|.+|...++.|+|+.++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 33335667777888778889999999999999999999999999999999999888777766554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=79.51 Aligned_cols=186 Identities=14% Similarity=-0.005 Sum_probs=115.0
Q ss_pred HHHHHHHHHhhhccceeeccchHHHhhhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhhhhHHHHHH
Q 010273 293 ITGCGIQCFQQITGIDATVYYSPTIFKGA-GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGR-KPLLYVSTIGMTIC 370 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~~~~~~ 370 (514)
++...+..+.....+.....-.-.|+++. ...+.+..|+......++..+..+..|+...|.+. |++++.+.+++.++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g 115 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIG 115 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHH
Confidence 33333444444444444444444555552 23445566777777889999999999999999886 88888999999999
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
.++........+. ..++.++.-++ .|+ +.+.....-.|+++..-.+.|.++++.......+|..+||.+...+..
T Consensus 116 ~llY~~l~~~~~~---~~y~mL~~R~l-~Gv-g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 116 NLLYLALAYVPNG---VKYLMLVARIL-TGV-GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHhcccc---hHHHHHHHHHH-cCc-CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 8888555443221 22333332222 222 223334566777776666778888888777777777777766543322
Q ss_pred h--h-----------hcCcEehhhHHHHHHHHHHhhhccccCCCCC
Q 010273 451 A--I-----------TVGGTFFVFSLISALSVAFVYKCVPETKGKS 483 (514)
Q Consensus 451 ~--~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (514)
- . -|..+-++.+++.++..+...++.+|..+..
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 1 0 1334557777777887777777777765443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-05 Score=70.97 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=112.5
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLII 139 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (514)
.....+..++ ++.+..|++..+.....+.+..+..+|.+++.++..|+...|++.+..++..+-.+..+++++...+.
T Consensus 251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~- 329 (422)
T COG0738 251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY- 329 (422)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-
Confidence 3344444455 45555899999999999999999999999999999999999999999988888888888988865544
Q ss_pred HHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHH
Q 010273 140 GRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSV 214 (514)
Q Consensus 140 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 214 (514)
+-++.|+..+..+|...++..+..+ ++ ....|..-....+|.++-|.+.|+ +.+..|-...+....+++.
T Consensus 330 ~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~---i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 330 ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGV---IADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHH---HHHhhhhHHHHHHHHHHHH
Confidence 4577899999999999999999998 33 333444445556777778888888 4445666666663333333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.1e-05 Score=70.19 Aligned_cols=59 Identities=10% Similarity=-0.064 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
++..-.+..+.+...+....++-+.+..|..-|+.|-+.|+..|+|+---..+.-++.|
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 33333333344333444555667777788999999999999999998655555545554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.8e-05 Score=75.38 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=102.1
Q ss_pred eeeccchHHHhhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHHHHHHHHHHhcCcc
Q 010273 308 DATVYYSPTIFKG-AGIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQ 385 (514)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (514)
+++...+..|+.+ .+..+..+... ...+....-+..+++|+++|+ +|+++.+..+.++..++..++.+....... .
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i-~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~-~ 81 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVL-FHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG-H 81 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc-c
Confidence 3444444555544 34344433333 333445556678889999997 589999998888888887776653211100 0
Q ss_pred hhhHHHHHHHHHHHhhhccccccccceeeeeccChh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hcC
Q 010273 386 LGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR---LRAQASALGAVGSRVSSGAIAMSFLSVSHAI-------TVG 455 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------g~~ 455 (514)
.......+....+...+..+.-|...+...|.++++ .+-....+.....++|+.+++.+.+.+.+.. +|.
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 111122223333344455555677778888887643 3667788888899999999999999887543 465
Q ss_pred cEehhhHHHHHHHHHHhhh
Q 010273 456 GTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (514)
..|.+.+++.+++.++...
T Consensus 162 ~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0045 Score=60.27 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--h-----------------------
Q 010273 79 TEVQQEVLVGILSI-ISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA--P----------------------- 132 (514)
Q Consensus 79 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~----------------------- 132 (514)
.++.+..+=....+ ...+...+..++++|++|.+++-+....+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666554444 445667789999999999998888887777776666653 1
Q ss_pred ------hHHHHHHHHHHHhcccccccc-chhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc
Q 010273 133 ------SFAVLIIGRLLAGVGIGFGVM-IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR 195 (514)
Q Consensus 133 ------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~ 195 (514)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333333333 347788999999999999999999999999998877777554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00083 Score=64.81 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCC---ccch--hhHh
Q 010273 133 SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAH---INWR--VMLG 207 (514)
Q Consensus 133 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~---~~Wr--~~f~ 207 (514)
.++..++.-++.|++.+.......++.+ .+|++. +..+..+.+++.+++.++--......++ ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5667777778899998888777777766 456543 3344444445444443332211111111 2233 2333
Q ss_pred hchHHHHHHHHHHhhccCChh
Q 010273 208 VGILPSVFIALALFVIPESPR 228 (514)
Q Consensus 208 ~~~~~~~~~~~~~~~~~e~~~ 228 (514)
+..+..++.++.+..++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555556666667777763
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.7e-05 Score=72.09 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHhccccccccchhhhhhhccccc---cccccchhhHHHH
Q 010273 112 WTIALAAIVFQAGAAIMTLAP---S------FAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSI---ARGSLTSFPEIFI 179 (514)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 179 (514)
|+++++.+++.+|.++..++. + .+.++++-++.++|.|+.-|...++++|.++++ +|...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 577888899999988855542 2 267889999999999999999999999999865 4667888999999
Q ss_pred HHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHhh
Q 010273 180 NLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALFV 222 (514)
Q Consensus 180 ~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 222 (514)
++|..++..+.+.+. ++.+|.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~~~~i~---~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ---QNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHH---HCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhc---cccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999998888844 5689999999988777776665444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.012 Score=55.82 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=90.2
Q ss_pred hHhhhhhccccC---hhHHHHHHHHHHH-HHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hh-
Q 010273 68 AIIFIKEDLKIT---EVQQEVLVGILSI-ISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA---------PS- 133 (514)
Q Consensus 68 ~~~~i~~~~~~s---~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~- 133 (514)
.+-.++|.+.++ ++.+.++-+..-+ +..+..++.+++++++.+.+++-.-+..+....+++++. ++
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 444566666554 5667788777777 778899999999999999999999988888888888874 11
Q ss_pred ----------------------HHHHHHHHHHHhcccccccc-chhhhhhhccccccccccchhhHHHHHHHHHHHHHHh
Q 010273 134 ----------------------FAVLIIGRLLAGVGIGFGVM-IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISN 190 (514)
Q Consensus 134 ----------------------~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 190 (514)
.|...+.-.+.=+-...... .-.....|.+..+|-.|..++++.+.+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 3345667888888999999999999999998888777
Q ss_pred hhccc
Q 010273 191 YAFSR 195 (514)
Q Consensus 191 ~~~~~ 195 (514)
..+..
T Consensus 205 ~~~~k 209 (509)
T COG3202 205 SWLSK 209 (509)
T ss_pred HHHhh
Confidence 77543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00026 Score=65.91 Aligned_cols=133 Identities=15% Similarity=0.002 Sum_probs=85.5
Q ss_pred HhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Q 010273 317 IFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVC 396 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+.++.+. +.....+.++++.+..++..+.+-|+.||+|-|....++..+.+++..+=........++..+..+......
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQS 148 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHH
Confidence 3444443 555667778889999999999999999999999999999999888877665544321112222112222111
Q ss_pred HHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 397 GNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 451 (514)
. .+...........-+..-.+|+++|+++..+..+...+|.+++..+-..+..+
T Consensus 149 i-aa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 149 I-AAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred H-HHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 1 11111111111112334458999999999999999999988887776666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00095 Score=60.89 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=81.1
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHH
Q 010273 318 FKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCG 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.++.+.... +...+.....+...+...+.|.++||+|||+.-+...++..++++.-.... ....++. -.
T Consensus 61 Y~~yg~~~~-qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~---------~~~L~~G-Rv 129 (354)
T PF05631_consen 61 YESYGFSEH-QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSN---------YPVLLLG-RV 129 (354)
T ss_pred HHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccc---------cHHHHHH-HH
Confidence 345555444 455556656788888889999999999999988888787777775432211 1222222 12
Q ss_pred HHhhhcccccccc-ceeeee----ccChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhc--CcEehhhHHHHHHHH
Q 010273 398 NVAFFSVGIGPVC-WVLSSE----IFPLRLRAQASALGAVGS-RVSSGAIAMSFLSVSHAITV--GGTFFVFSLISALSV 469 (514)
Q Consensus 398 ~~~~~~~~~~~~~-~~~~~~----~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~ 469 (514)
+++.......... .-++.| -+|++..+...+...... .+..+....+...+.+..+. ..+|.....+.+++.
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 2222221111111 112233 245554455555444222 23333334444455555544 567777777777776
Q ss_pred HHhhhccccCCC
Q 010273 470 AFVYKCVPETKG 481 (514)
Q Consensus 470 ~~~~~~~~~~~~ 481 (514)
++....-+|..+
T Consensus 210 ~~I~~~W~ENyg 221 (354)
T PF05631_consen 210 VLILKTWPENYG 221 (354)
T ss_pred HHHHhcccccCC
Confidence 665544455443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00068 Score=58.58 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=36.7
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhhhcccCC--CCccchhhHhhchHHHHHHHHHHhhc
Q 010273 166 IARGSLTSFPEIFINLGILLGYISNYAFSRLP--AHINWRVMLGVGILPSVFIALALFVI 223 (514)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~--~~~~Wr~~f~~~~~~~~~~~~~~~~~ 223 (514)
|+|+....+...+.++|.++.-..--.-.+.. ....|++.+.+.+++.++-++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777888888888999877533211100000 12469999998887777666665554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=65.50 Aligned_cols=140 Identities=12% Similarity=0.006 Sum_probs=94.7
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHH-----H
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQ-----A 123 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-----~ 123 (514)
+-+.+.++..++..+.+.+.+.. ..++.-..++..+....|.+|-.++.--...+ |+ |++.+.+.+... +
T Consensus 250 iPL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~ 324 (402)
T PF02487_consen 250 IPLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLL 324 (402)
T ss_pred HHHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHH
Confidence 34455556555444444333321 12233346778888888888877765432221 33 333333333222 2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhc
Q 010273 124 GAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAF 193 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~ 193 (514)
.....-+.++.|.+++.-+..|+..|..+......+.|-.++++|-.+++....+-++|..++.+++-.+
T Consensus 325 l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 325 LQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222334588999999999999999999999999999999999999999999999999999998888653
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=47.52 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=48.5
Q ss_pred HhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 301 FQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
++.+.+.....-|.|.++++.|.+.. +.+.+.....+..+++.++.|+++||+++++.......
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~-~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPS-QIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 33344455666789999998776655 55666666789999999999999999999887765443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0037 Score=60.72 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=88.7
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcC----Cc-hhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHH
Q 010273 318 FKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVG----RK-PLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAI 392 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
.++.+.++.+... ..... -......++.|.++|-+. || .-+.++.++..++...+........ .......+
T Consensus 17 ~~~l~ls~~~~~~-~~~~~-~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~--s~~~~~~~ 92 (433)
T PF03092_consen 17 KDDLGLSPAQLQR-LSSLA-SLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES--SAAIAVVL 92 (433)
T ss_pred HHHcCCCHHHHHH-HHHHH-hCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc--hhhhHHHH
Confidence 3345555444333 33323 223455789999999873 34 4444555555444444443322111 11111111
Q ss_pred HHHHHHHhhhccccccccceeeeecc---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHH
Q 010273 393 LSVCGNVAFFSVGIGPVCWVLSSEIF---PLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSV 469 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 469 (514)
+... .+..........+...|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..
T Consensus 93 l~la---~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 93 LFLA---SFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHH---HHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 1111 1111111123334455553 433 78888888999999999999999999999999999988888877777
Q ss_pred HHhhhccccC
Q 010273 470 AFVYKCVPET 479 (514)
Q Consensus 470 ~~~~~~~~~~ 479 (514)
+...+..+|+
T Consensus 169 ~~~~~~~~e~ 178 (433)
T PF03092_consen 169 IVALFLLEER 178 (433)
T ss_pred HHHHHhhhhc
Confidence 6666666663
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.31 E-value=4.9e-05 Score=75.28 Aligned_cols=162 Identities=8% Similarity=-0.065 Sum_probs=1.8
Q ss_pred chHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcC---------
Q 010273 313 YSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGN--------- 383 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 383 (514)
-++++-++. ..+....+++...+-++.++..++..++.+|.+|-+.+-.+.++++++.+++.+.......
T Consensus 25 ~lttiErRF-~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~ 103 (539)
T PF03137_consen 25 SLTTIERRF-GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS 103 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence 334433344 4455566777777899999999999999999877777778888888887777654222110
Q ss_pred --------------------------------cchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH
Q 010273 384 --------------------------------GQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431 (514)
Q Consensus 384 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (514)
.......+++..-++.+......+++..+|+-|..+++..+...|+..
T Consensus 104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~ 183 (539)
T PF03137_consen 104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILY 183 (539)
T ss_dssp ------------------------------------------------SSS-----------------------------
T ss_pred ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhh
Confidence 011123334444455556666677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh---------------------hh-cCcEehhhHHHHHHHHHHhhhc
Q 010273 432 VGSRVSSGAIAMSFLSVSHA---------------------IT-VGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 432 ~~~~~g~~~~~~~~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
+...+|-++|-.+.+...+. .| |...|++.+.+.++..+....+
T Consensus 184 ~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 184 AMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888887776666544321 11 4345666666666666654444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0038 Score=50.41 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccce
Q 010273 333 TVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWV 412 (514)
Q Consensus 333 ~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (514)
.........+..++.+.+.+++|.|+.+.++.++..+-........ ...++....+.++.........-.
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~----------~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN----------SYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHhhhhHHhhHhhhH
Confidence 3334456667778889999999999999988877775544432221 222233333333333333444446
Q ss_pred eeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010273 413 LSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSV 448 (514)
Q Consensus 413 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 448 (514)
++.+...++.+++..|+...+.+.+..+|..+.-.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788889999998888888777776655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.027 Score=55.87 Aligned_cols=141 Identities=17% Similarity=0.103 Sum_probs=83.2
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH--HH-HHHHHHHhhhh----H-HHHHHHHHH
Q 010273 72 IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV--FQ-AGAAIMTLAPS----F-AVLIIGRLL 143 (514)
Q Consensus 72 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~--~~-~~~~~~~~~~~----~-~~~~~~r~l 143 (514)
+.--+|-+..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-+.+ .+ ++..+...... + ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888899999999999999999999988754333322 111111 11 11111111111 1 122334456
Q ss_pred HhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccc-hhhHhhchHHHHHH
Q 010273 144 AGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINW-RVMLGVGILPSVFI 216 (514)
Q Consensus 144 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~W-r~~f~~~~~~~~~~ 216 (514)
.++..|...|....+..+.. .++-+...|-.+....+|.++|.++.+++. ....|- +..++++++..++.
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL--lp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLL--LPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHH
Confidence 67778878887766665432 223466788888899999999988887752 233443 44444444333333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=56.86 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=92.8
Q ss_pred cchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh------h----hH
Q 010273 65 MSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA------P----SF 134 (514)
Q Consensus 65 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~----~~ 134 (514)
+..........-|+++..+|..-+.-.+....+.+...++.+|+|..+.-++++..-..+..++..+ + +.
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 3334343334449999999999999999999999999999999998888777776555444443322 2 33
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 135 AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 135 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
..++.+-.+.=+|-=+.-....-++.|..|+++||...|.-.+..++--++-..++-.
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444556677788999999999999999999988888777666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=52.74 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=75.9
Q ss_pred ceeeccchHHHhhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCc
Q 010273 307 IDATVYYSPTIFKGA--GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNG 384 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (514)
+-....|+..|+.+. +.+..+...-+.-...=..+...+....+.|.++.|++++...+...+...++.+....
T Consensus 19 frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv---- 94 (412)
T PF01770_consen 19 FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV---- 94 (412)
T ss_pred cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH----
Confidence 344555666676653 44433332222222223444556677789999999999988877777666665544331
Q ss_pred chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 385 QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
..+-..-++.+..... -...++++=...|+++--++.+......-+|..++..++..+..
T Consensus 95 -----~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 95 -----LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred -----HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 12333555455577777788888888888887777777666555
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.02 Score=55.60 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcc----------------h-hh-----HHHHHHHHHHH
Q 010273 342 IFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQ----------------L-GI-----ALAILSVCGNV 399 (514)
Q Consensus 342 ~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~-----~~~~~~~~~~~ 399 (514)
+..++.+++++|++|++............+.++.+......+.. . .. .+.........
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 33788899999999998877766666655555554432211110 0 00 00111111112
Q ss_pred hhhcccccc-ccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 400 AFFSVGIGP-VCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
-.++....+ ..|.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333 678899999999999999999999999999999988887763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00032 Score=64.72 Aligned_cols=112 Identities=6% Similarity=-0.144 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHHHHhc----CcchhhHHHHHHHHHHHhhhcccc
Q 010273 332 ATVAVGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSLSLSLTFLG----NGQLGIALAILSVCGNVAFFSVGI 406 (514)
Q Consensus 332 ~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
....++++..+|+.+.++..-+. .+|++. +..+.=.+...++........ +.........+......++.++-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45568899999999888753221 233333 222222222222222211100 000001111222222233333334
Q ss_pred ccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHH
Q 010273 407 GPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMS 444 (514)
Q Consensus 407 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 444 (514)
....+.+..+..++++|..+-.+....-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888777777666666666666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=59.63 Aligned_cols=161 Identities=8% Similarity=-0.067 Sum_probs=111.0
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhc----------------
Q 010273 319 KGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLG---------------- 382 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 382 (514)
+.....+. ..+++...+-++.++...+..+...|.+|-+.+-++.++++++.++..+.-...+
T Consensus 125 rRF~i~Ss-~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 125 RRFKISSS-QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhcCCCCC-cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 33444444 4666666678888888889999999998888888999999998888776522210
Q ss_pred ---------------------------CcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHH
Q 010273 383 ---------------------------NGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSR 435 (514)
Q Consensus 383 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 435 (514)
..+...++.+++.-++.+.+....+++..+|+-|-..+++.....|+..++..
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 00112455556666667777777788888999999988888999999999888
Q ss_pred HHHHHHHHHHHHHHhhh------------------h-cCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 436 VSSGAIAMSFLSVSHAI------------------T-VGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 436 ~g~~~~~~~~~~~~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
+|-++|-.+.+.....+ | |...|++.+.+.++..+.++++ |+..+
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp 347 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELP 347 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCc
Confidence 88888777776654311 1 3334666666666666664444 44433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.13 Score=49.58 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHhccc
Q 010273 90 LSIISLFGSLAGGKTSD---VLGRKWTIALAAIVFQAGAAIMTLA------------------PSFAVLIIGRLLAGVGI 148 (514)
Q Consensus 90 ~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G~~~ 148 (514)
..++..++..+.+.+.+ ++||++.+.++..+..++.++.-.. +++...++.-++.|++-
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 44555556666666664 5789999999999988888876654 24667778889999999
Q ss_pred cccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHh
Q 010273 149 GFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISN 190 (514)
Q Consensus 149 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 190 (514)
++.....+.++.+.+ +++|..+.++...-..++..++....
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999 67888888888888888776654433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.058 Score=49.64 Aligned_cols=132 Identities=20% Similarity=0.114 Sum_probs=75.8
Q ss_pred chHHHhhhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 010273 313 YSPTIFKGAGIKGN-NELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALA 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
..+.+..+...... ...+.......+...++.++.|.+.||+|||+.+..+.....++.....+... .. ...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~ 96 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VG-LAL 96 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------ch-HHH
Confidence 44444444443332 23455555566777787899999999999996666665442333222222111 00 111
Q ss_pred HHHHHHHHhhhccccccccceeeeeccCh-hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 010273 392 ILSVCGNVAFFSVGIGPVCWVLSSEIFPL-RLRAQASALGAV-GSRVSSGAIAMSFLSVSHA 451 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~ 451 (514)
+.......+.......+...++..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112333334456677888888887 678888888777 5677777777666655544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.24 Score=46.60 Aligned_cols=127 Identities=11% Similarity=-0.027 Sum_probs=52.3
Q ss_pred HHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 010273 298 IQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLS 377 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 377 (514)
+........++.+.+-.++|.+.....+. .-.......+.+.+...+.-.+--+...|....++..+..+..++....
T Consensus 25 llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l 102 (406)
T KOG1479|consen 25 LLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTL 102 (406)
T ss_pred HHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555443333 2333333444555544444444444332222222222222222222111
Q ss_pred HHH---hcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 378 LTF---LGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 378 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
... ............+......+..........+...++. |++.....+
T Consensus 103 ~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm 154 (406)
T KOG1479|consen 103 DLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVM 154 (406)
T ss_pred HHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHH
Confidence 111 2222233333444444444444444455555666555 777654433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.011 Score=56.34 Aligned_cols=118 Identities=11% Similarity=-0.102 Sum_probs=75.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChh---hhhHHHHHHHHHH
Q 010273 358 PLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLR---LRAQASALGAVGS 434 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 434 (514)
+++.++.++..++.+++.+.......+.......+.....+...+.++.=|...++..|.++++ .|...........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4566677777777777655543222211111112222222333444555577778888888765 3566777789999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 435 RVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 435 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
++|..++..+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888888888888777765443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.55 Score=47.19 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHHHHhcCc----------------chhhHHHHHHHHHH
Q 010273 336 VGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSLSLSLTFLGNG----------------QLGIALAILSVCGN 398 (514)
Q Consensus 336 ~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 398 (514)
..-......+.+++++|.+ ||-+++.++.++..++..++.......... .......+......
T Consensus 82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 4444556678899999975 777888888888888876666655443110 11122233333334
Q ss_pred HhhhccccccccceeeeeccC---hh-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHh
Q 010273 399 VAFFSVGIGPVCWVLSSEIFP---LR-LRA--QASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFV 472 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~p---~~-~~~--~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 472 (514)
......+.-|...++-.|.++ ++ .+. .-+.......+.|..++..+..+..++.+|...|.+..++..++.++.
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 444566667888888888887 22 222 445556777888888888888888889999998888888877777664
Q ss_pred h
Q 010273 473 Y 473 (514)
Q Consensus 473 ~ 473 (514)
.
T Consensus 242 ~ 242 (571)
T KOG1237|consen 242 L 242 (571)
T ss_pred H
Confidence 4
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.31 Score=44.00 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcc
Q 010273 90 LSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS 163 (514)
Q Consensus 90 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 163 (514)
..+....++++.+.+..++|-|+++.++...+...- ..-+=+.|..++-.-...|++.+..+..--+++++.-
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 445556777777799999999999999888876532 2223367888899999999999999888777776654
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.23 Score=48.19 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhH--HHHHH--HHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhccccc
Q 010273 84 EVLVGILSIISLFGSLAGGKTSDVLGRK--WTIAL--AAIVFQAGAAIMTLA---------PSFAVLIIGRLLAGVGIGF 150 (514)
Q Consensus 84 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~~~ 150 (514)
-.....|.++-.+|..+..+.. .-++| ++++. .=+++.-..++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556667777777777554321 11222 33322 223333344444332 4667777889999999999
Q ss_pred cccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 151 GVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
....+..+..+..++++|..+-.+...+..+|..+|..++..
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999888888888898888877654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0082 Score=56.37 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=82.6
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCchhhhhh-hHHHHHHHHHHHHHHHHh
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK----VGRKPLLYVS-TIGMTICLLSLSLSLTFL 381 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~r~~~~~~-~~~~~~~~~~~~~~~~~~ 381 (514)
+..-..|.|.|+++.|............ .-+.+++..++.|..+|| +||||..+.. .....++.+++.......
T Consensus 48 wA~elsy~tPyl~~lGvphk~~S~iw~~-gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 48 WALELSYLTPYLQSLGVPHKWSSIIWLC-GPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred HHHHhccccHHHHHcCCCcccccccccc-cccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence 4455568889999988777655555444 346777788999999997 5887766544 444555666555544332
Q ss_pred c----Ccch-----hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 010273 382 G----NGQL-----GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQ-ASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 382 ~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~~~~~~~~~ 446 (514)
. +... .....++...++ =+.........-++..|+..++.+.+ +++....+..+|+.+|-...+
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LL-D~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLL-DVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHH-HhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 1 1111 111111111111 12222233344577788877777777 888888888888877655444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.86 Score=44.79 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcC---cc-------------hhhHH------HHHHHH
Q 010273 339 TKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGN---GQ-------------LGIAL------AILSVC 396 (514)
Q Consensus 339 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~------~~~~~~ 396 (514)
+.++...+-.++++++++.++..+..........++++......+ ++ ..... ......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 345556778899999999988776666655555555554321110 00 00000 000011
Q ss_pred HHHhhhcccccc-ccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 397 GNVAFFSVGIGP-VCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 397 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
...-.++....+ ..|.+++|..+.++..+-+++....+++|..++..+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112112222 457889999999999999999999999999998888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.27 Score=48.97 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCcEehhhHHHHHHHHH
Q 010273 423 RAQASALGAVGSRVSSGAIAMSFLSVSH-AITVGGTFFVFSLISALSVA 470 (514)
Q Consensus 423 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 470 (514)
.+...|-......+|+++|+.+.+.+.- ..|.....++.+.+.++..+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4566777888888999999888887665 46655555555555444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.028 Score=49.89 Aligned_cols=137 Identities=17% Similarity=0.147 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhcc
Q 010273 84 EVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEIS 163 (514)
Q Consensus 84 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 163 (514)
|.+.-+-.+...+..+.+....||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++ +..+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSRY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hccC
Confidence 334444445555666667778888643222344556777888889999999999999888888888665444443 3334
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhch-HHHHHHHHHHhhccCC
Q 010273 164 PSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGI-LPSVFIALALFVIPES 226 (514)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~-~~~~~~~~~~~~~~e~ 226 (514)
++. ..+-+..+.+.+.++|..-=..+.+. -..+-|...++.. ++.+.....++.++++
T Consensus 144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~-~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSW-ANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CCc----eeccccCCCCcchhhhhhHHHHHhhh-cCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 332 23333333333444443322222211 1235566666644 4444444444444443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.21 Score=48.06 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHHHhhhccceeeccchHHHhhh--cCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhh
Q 010273 298 IQCFQQITGIDATVYYSPTIFKG--AGIKGNNE--LLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVS 363 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~ 363 (514)
+.++.+.........-.|.++++ .+.+-.+. ..+.+-++.+=-+-..++=...+.|+||||..++-
T Consensus 7 ~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 7 LLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 34455555554444567888877 23222221 12223344443333444445566788999886654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.031 Score=51.63 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHH--HHHHHHHHHHHH----------hhhhHHHHHHHHHHHhccccccc
Q 010273 86 LVGILSIISLFGSLAGGKTSDV-LGRKWTIALA--AIVFQAGAAIMT----------LAPSFAVLIIGRLLAGVGIGFGV 152 (514)
Q Consensus 86 ~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~r~l~G~~~~~~~ 152 (514)
....|.++-.+|..+.++.-=+ -.+|++.+.+ =+++.-..++|. +.+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567888888888877764211 1344444332 222222233331 23455777888999999999999
Q ss_pred cchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 153 MIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
..+..+..+..++++|..+-.+...+..+|..+|..++..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888887777666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=2 Score=39.80 Aligned_cols=32 Identities=9% Similarity=-0.105 Sum_probs=25.1
Q ss_pred cceeeeeccChhhhhHHHHHHHHHHHHHHHHH
Q 010273 410 CWVLSSEIFPLRLRAQASALGAVGSRVSSGAI 441 (514)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 441 (514)
..-+..|..|.+.|..+.|+.|.....-..+-
T Consensus 407 VtqimQe~VpEseR~vv~gvqnsL~~~ldll~ 438 (503)
T KOG2601|consen 407 VTQIMQETVPESERCVVFGVQNSLNSALDLLK 438 (503)
T ss_pred HHHHHHHhcchhhhhhhHhHHHHHHHHHHHHH
Confidence 33557888999999999999998887755443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.1 Score=31.71 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=48.7
Q ss_pred chHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH
Q 010273 313 YSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSL 378 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 378 (514)
.+|...++.+ .+....+++.....++.++|.+...++.++.++++.+..+.+...+....+.+..
T Consensus 14 lLP~M~~~~~-ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 14 LLPLMQADGG-LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666655 4555667777778899999999999998887777788887777777766665544
|
Note that many members are hypothetical proteins. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.7 Score=39.11 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=94.4
Q ss_pred HHHHHHHhhhhhhhhhhhcchhHhh-hhhccccCh-hHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHH
Q 010273 47 CAFFASLNSVLLGYDVGVMSGAIIF-IKEDLKITE-VQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQA 123 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~ 123 (514)
.++-.++.++..++-.+.+.+.+-. =.+.+.++. +|+-|....|.+|-.++.--.-..--+ .---.++-.-.+++.+
T Consensus 252 ~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~ 331 (409)
T KOG3880|consen 252 YMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFL 331 (409)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHH
Confidence 3444555555554443333332211 134455544 458888888877755433211111111 0111233334455556
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhh
Q 010273 124 GAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYA 192 (514)
Q Consensus 124 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 192 (514)
......+.+++|..++.-+.-|+-.|..+....--+.+-.++++|-.+|+....+-++|..++.+++-.
T Consensus 332 ~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 332 LQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 666677889999999999999999999998888888888899999999999999999999988877754
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.86 E-value=11 Score=36.72 Aligned_cols=108 Identities=13% Similarity=0.118 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcC---------------cc------------hhhHHH
Q 010273 339 TKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGN---------------GQ------------LGIALA 391 (514)
Q Consensus 339 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~------------~~~~~~ 391 (514)
++++..++-.++.+++.+.++..........+++++++......+ .+ +.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 566777888899999998888777666666666665555442110 00 111111
Q ss_pred HHHHHHHHhhhccccc-cccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 392 ILSVCGNVAFFSVGIG-PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
.+. .-.++.... -..+..++|....++..+-+++.+...+++..++..+...+.+
T Consensus 154 Yi~----aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIM----AELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 111111111 1455678888888888899999999999999888888877765
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.24 E-value=3.3 Score=38.68 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=62.2
Q ss_pred HHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCchhhhhhh-HHHHHHH
Q 010273 298 IQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILID-----KVGRKPLLYVST-IGMTICL 371 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~r~~~~~~~-~~~~~~~ 371 (514)
+....+...+.... -.|.+++..+.+-... +..++.+ .-.--.++...+.| |+||||..++-. .+....+
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~-a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m 113 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ-AIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM 113 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhh-hhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence 33444555444444 7888888555443322 2222211 11223455666667 999998765432 2222222
Q ss_pred HHHHHHHHHhc--CcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010273 372 LSLSLSLTFLG--NGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSF 445 (514)
Q Consensus 372 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 445 (514)
..+......+. +...+........++..-+....--.........+..+++-|-+........+.|.+++-.++
T Consensus 114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 22222111111 111111211211212222222111112223333444566666666665556666666655444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.59 E-value=6.4 Score=36.71 Aligned_cols=153 Identities=8% Similarity=-0.084 Sum_probs=70.2
Q ss_pred HHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH----HHHHHHHHHh---cCcchh
Q 010273 315 PTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICL----LSLSLSLTFL---GNGQLG 387 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~ 387 (514)
..++...++.+........+.-+....+...+.|...|+..|+|++.....+.=++. .++....... ......
T Consensus 51 sL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv 130 (503)
T KOG2601|consen 51 SLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPV 130 (503)
T ss_pred HHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccH
Confidence 444555555555444555555555666666777788899999887655444322211 1111111111 001111
Q ss_pred hHHHHHHHHHHHhhhcccc------ccccceee-eeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehh
Q 010273 388 IALAILSVCGNVAFFSVGI------GPVCWVLS-SEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFV 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 460 (514)
....++............. ..=-|..+ +|--++.......+.....-.....+.|.+.|.+....+.+..-..
T Consensus 131 ~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~ 210 (503)
T KOG2601|consen 131 FTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGT 210 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhh
Confidence 1111111111111111100 00112222 2333333334444555556666778899999988876665554444
Q ss_pred hHHHHHH
Q 010273 461 FSLISAL 467 (514)
Q Consensus 461 ~~~~~~~ 467 (514)
+++-..+
T Consensus 211 f~~w~~v 217 (503)
T KOG2601|consen 211 FAAWALV 217 (503)
T ss_pred hHHHHHH
Confidence 4444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.74 E-value=13 Score=32.95 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHhcccccccc
Q 010273 83 QEVLVGILSIISLFGSLAGGKTSDVLGRK--WTIALAAIVFQAGAAIMTLA----P---SFAVLIIGRLLAGVGIGFGVM 153 (514)
Q Consensus 83 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~r~l~G~~~~~~~~ 153 (514)
.|.+.+.+.+...+|+-+..++..|-..| ..+.+..++.++...+.... + +...=+++.++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58899999999999999988888776554 45555555544444333322 1 122224555556667788999
Q ss_pred chhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH
Q 010273 154 IAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA 219 (514)
Q Consensus 154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~ 219 (514)
....+=+++.|++.|+..+.++..-.++=..++-. -+..-....+-|..|-++.....+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLy---nlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY---NLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe---ecccccCccccchhhhhhHHHHHHHHHH
Confidence 99999999999999999988887655543322211 1000111246678888876666555443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.36 E-value=38 Score=31.52 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=61.5
Q ss_pred Hhhhhhcc-ccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHH-----HHHHHhh----hhHHHHH
Q 010273 69 IIFIKEDL-KITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAG-----AAIMTLA----PSFAVLI 138 (514)
Q Consensus 69 ~~~i~~~~-~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~ 138 (514)
+..+...+ |-.--|.+.+.+.|.....+|+...-++.|.--.-+.+..-+++..++ .+-..|+ ++-+.++
T Consensus 30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly 109 (508)
T COG4262 30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY 109 (508)
T ss_pred HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence 33444444 334568889999999999999999888887544333332222222221 1112333 4667888
Q ss_pred HHHHHHhccccccccchhhhhhh
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAE 161 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~ 161 (514)
+.-++.|.-.|...|....++..
T Consensus 110 ~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 110 ALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHhcchHHHHHHHHH
Confidence 88999999999999999888876
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.07 E-value=0.098 Score=45.27 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=40.9
Q ss_pred HhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHh---------hhhhhhHHH
Q 010273 53 LNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKT---------SDVLGRKWT 113 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l---------~dr~Grr~~ 113 (514)
.+.+.+.+..++....+-...++.|+++.....++-+..+.-++..++.|.. .||+|||+.
T Consensus 24 vGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 24 VGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 3444444445555445555566778888777777777777888888877643 579998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 514 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-50 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 61/461 (13%), Positives = 136/461 (29%), Gaps = 46/461 (9%)
Query: 21 DNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITE 80
N+ Q+ +G +R Y++ A SL L + + ++ +T
Sbjct: 2 GNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSL-FFLWAVANNLNDILLPQFQQAFTLTN 60
Query: 81 VQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLA---PSFAVL 137
Q ++ + G L K I ++ GAA+ A ++ +
Sbjct: 61 FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF 120
Query: 138 IIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYI--SNYAFSR 195
++G + G+G A ++ + P + + + F + G ++ + + S
Sbjct: 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180
Query: 196 LPAHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEE 255
+P + S + + + ++++ + L++ T
Sbjct: 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSV--QTPYMIIVAIVLLVALLIMLT--------- 229
Query: 256 RLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSP 315
+ +Q SD + + ++ R Q G +
Sbjct: 230 KFPALQSDNHSDAKQGSFSASLSRLARIR------HWRWAVLAQFC--YVGAQTACWSYL 281
Query: 316 TIFKGAGIKGNNELLAATVAVGF--TKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLS 373
+ I G AA G I LI + +L + L
Sbjct: 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL- 340
Query: 374 LSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL---- 429
++ G +G+ L + F P + L + + S+
Sbjct: 341 ----ISAFAGGHVGLIALTL-----CSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMT 390
Query: 430 ---GAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISAL 467
G + + V G ++ + ++ A + F I A
Sbjct: 391 IIGGGIVTPV-MGFVSDAAGNIPTAELIPALCFAVIFIFAR 430
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIA 155
L G SD +GR+ I + +F + S VLI + G+G G G ++A
Sbjct: 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMA 109
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 63/422 (14%), Positives = 119/422 (28%), Gaps = 67/422 (15%)
Query: 96 FGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP----SFAVLIIGRLLAGVGIGFG 151
F G SD + + I+ A M P S AV+ + L G G G
Sbjct: 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136
Query: 152 VMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWR----VMLG 207
+ RG + S N+G + + + +W +
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL--FLLGMAWFNDWHAALYMPAF 194
Query: 208 VGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSD 267
IL ++F + P+S E +
Sbjct: 195 CAILVALFAFAMMRDTPQSCGL--------------------PPIEEYKNDYPDDYNEKA 234
Query: 268 NAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNN 327
E ++ + ++ ++L F + + +SPT K K
Sbjct: 235 EQELTAKQIFMQYVLP-----NKLLWYIAIANVFVYLL-RYGILDWSPTYLKEV--KHFA 286
Query: 328 ELLAATVAVGFTKTIFILIAII-------LIDKV---GRKPLLYVSTIGMTICLLSLSLS 377
++ ++ I + DKV R +TI + ++
Sbjct: 287 LDKSSWAY-----FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341
Query: 378 LTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVS 437
G + + + V G F G + + + E+ P + A+ + +
Sbjct: 342 PA----GNPTVDMICMIVIG---FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL- 393
Query: 438 SGAIAMSFLS--VSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQIEMLFQDER 495
G++A S + G F V S L+V + + + E L Q+
Sbjct: 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI----GEKRRHEQLLQELV 449
Query: 496 ER 497
R
Sbjct: 450 PR 451
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 58/435 (13%), Positives = 129/435 (29%), Gaps = 130/435 (29%)
Query: 4 QENGNKYRRMDAAGNEEDNSLTQSPEQEEGFDKSGSTRKYVLACAFFASLNSVLLGYDVG 63
+ ++ + SP + E S TR Y+ + N V Y+V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 64 VMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAG-GKTSDVLGRKWTIALAAIVFQ 122
++ LK+ + E+ + + G + G GKT +A V
Sbjct: 133 R-------LQPYLKLRQALLELRPA--KNVLIDG-VLGSGKTW----------VALDVCL 172
Query: 123 AGAAIMTLAPSFAV--LIIGR------LLAGVGIGFGVMIAPLYIAEISPSIARGSLTSF 174
+ + F + L + +L M+ L +I P+ S S
Sbjct: 173 SYK--VQCKMDFKIFWLNLKNCNSPETVLE--------MLQKLL-YQIDPNWTSRSDHSS 221
Query: 175 PEIFINLGILLGYISNYAFSR-LPAHINWRVMLGVGIL-----PSVFIALALFVIPESPR 228
I + + + + S+ +L +L + A L
Sbjct: 222 N-IKLRIHSIQAELRRLLKSKPYE-----NCLL---VLLNVQNAKAWNAFNL-------- 264
Query: 229 WLVMQGRIDEARLVLSKTNESVKEV--EERLAEIQVAAGSDNAEKNEEKAVWREIIN--- 283
+I L+ ++ + V + I + S +E K++ + ++
Sbjct: 265 ----SCKI----LLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 284 ---PSPAVRR--MLITGCG---------------IQCFQQITGIDATV-----------Y 312
P + ++ + C + T I++++ +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 313 YSPTIF-KGAGIKGNNELLAATVAVGFTKTIFIL-------IAIILIDKVGRKPLLYVST 364
++F A I T + ++ +++++K+ + L+
Sbjct: 376 DRLSVFPPSAHIP--------------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 365 IGMTICLLSLSLSLT 379
TI + S+ L L
Sbjct: 422 KESTISIPSIYLELK 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.32 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.28 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.25 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=375.69 Aligned_cols=441 Identities=30% Similarity=0.549 Sum_probs=340.1
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhcccc--------ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q 010273 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKI--------TEVQQEVLVGILSIISLFGSLAGGKTSDVLGR 110 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 110 (514)
.++++.+.+.++++++.++.++|.+.++.++|.+.++++. +..+.|++.+++.+|..++++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777788889999999999999999999887743 34678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccc
Q 010273 111 KWTIALAAIVFQAGAAIMT------------------LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLT 172 (514)
Q Consensus 111 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 172 (514)
|++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccCC-----CCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhc
Q 010273 173 SFPEIFINLGILLGYISNYAFSRLP-----AHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTN 247 (514)
Q Consensus 173 ~~~~~~~~~g~~~g~~~~~~~~~~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
++.+.+..+|.++++.++..+.... ...+||+.+.+..++.++..+..+++||+|+|+..+++.|++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 9999999999999988887654322 23578889999999988888889999999999999999999999887765
Q ss_pred cChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCch
Q 010273 248 ESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNN 327 (514)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (514)
.+....++..+.... ..+.++.......++ +++.........+....+.+.+.+|.|.+.+..+....
T Consensus 245 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (491)
T 4gc0_A 245 GNTLATQAVQEIKHS------LDHGRKTGGRLLMFG-----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD- 312 (491)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHTTHHHHSC-----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH-
T ss_pred CCchhHHHHHHHHHH------HHhhhhhhhHHHHhc-----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc-
Confidence 443332222111110 011111111112222 12333444455556666677777888888877765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccc
Q 010273 328 ELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
.........++..+++.++++++.||+|||+.+..+.....++.+.+......... . ...+.........+..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP--G--IVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC--H--HHHHHHHHHHHHHHHTTTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc--h--HHHHHHHHHHHHHHHhHHH
Confidence 34445566788899999999999999999999998888887777666554432211 1 2223333334445556667
Q ss_pred cccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhcCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH------AITVGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
|+.+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ ..+....+++++++++++.++.++++||+|+
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 8888999999999999999999999999999999888776543 3345567888999999999988999999999
Q ss_pred CCHHHHHHHhhhcc
Q 010273 482 KSLEQIEMLFQDER 495 (514)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (514)
|+.+|+++..+++.
T Consensus 469 ~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 469 KTLEELEALWEPET 482 (491)
T ss_dssp CCHHHHGGGTC---
T ss_pred CCHHHHHHHhCCCC
Confidence 99998877665443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=327.49 Aligned_cols=401 Identities=15% Similarity=0.074 Sum_probs=296.5
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++.++..+..+++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344566677777788888889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC
Q 010273 121 FQAGAAIMTL----APSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL 196 (514)
Q Consensus 121 ~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 196 (514)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCcc-chhhHhhchHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 197 PAHIN-WRVMLGVGILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 197 ~~~~~-Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
+..+ ||+.|++.+++.++..+ .++++||+|+....+++.++ +.. .+.+. .. ..+++...+
T Consensus 180 -~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~---~~---~~~~~~~~~ 241 (451)
T 1pw4_A 180 -AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------KND--YPDDY---NE---KAEQELTAK 241 (451)
T ss_dssp -HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------CCC---------------------CCT
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------ccc--ccccc---hh---hhhcccccc
Confidence 3467 99999998877766554 46778888753211110000 000 00000 00 000001111
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
+...++.++ ++.++...+..+...........+.|.++++..+.+....+.......++.+++.++.|++.||+
T Consensus 242 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 242 QIFMQYVLP------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111333333 23344444444444555566778899999886556666677777778899999999999999999
Q ss_pred --CCchhhhhhhHHHH-HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH
Q 010273 355 --GRKPLLYVSTIGMT-ICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431 (514)
Q Consensus 355 --~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (514)
+||+.+..+..+.. ++.+++... .+... +. ........+++..+..+....+..|.+|++.|++++|+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 316 FRGNRGATGVFFMTLVTIATIVYWMN----PAGNP--TV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTTSC----CTTCH--HH-HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHh----cccCH--HH-HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 99888776655544 333332211 11111 22 2222222333333444566688899999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 432 VGSRV-SSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 432 ~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
...++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+..
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999898888888888777777665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=309.00 Aligned_cols=371 Identities=11% Similarity=0.070 Sum_probs=278.9
Q ss_pred HHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010273 46 ACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125 (514)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 125 (514)
..+.++++..+..+++....++..|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++.+.++++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33445556667777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc-cCCCC--
Q 010273 126 AIM---TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS-RLPAH-- 199 (514)
Q Consensus 126 ~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~-- 199 (514)
+++ +++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. .....
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 888999999999999999999999999999999999999999999999999999999999998865 32111
Q ss_pred --------------------ccchhhHhhchHHHHHHHHHHhh--ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHH
Q 010273 200 --------------------INWRVMLGVGILPSVFIALALFV--IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERL 257 (514)
Q Consensus 200 --------------------~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (514)
.+||+.|++.++..++..+..++ .||+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------------------- 237 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---------------------------- 237 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----------------------------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----------------------------
Confidence 01999998866665555544333 4555420
Q ss_pred HHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHH-hhhcCCCCchHHHHHHHHH
Q 010273 258 AEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTI-FKGAGIKGNNELLAATVAV 336 (514)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 336 (514)
..+++++++.+..+++.++.+. ++...+..+...........+.|.| +++..+.+....+......
T Consensus 238 -------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 238 -------NHSDAKQGSFSASLSRLARIRH------WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp -------CCCCSSTTSHHHHHHHHTTCSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred -------ccccccccchhhhHHHHHhChH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 0011122233445566666333 2222222233333344566788988 8887566666777777778
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeee
Q 010273 337 GFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSE 416 (514)
Q Consensus 337 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
.++.+++.++.|++.||++||+.+..+.++..++.+++..... ....+.. ...+++.....|..+++..|
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---------HVGLIAL-TLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHH-HHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---------cHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999988887777666555443221 1111111 22333344455777788888
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHH
Q 010273 417 IFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSV 469 (514)
Q Consensus 417 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 469 (514)
.+|++ ++.+.++.. ...+++.++|.+.|.+.+..| ++..+.+.+++.++..
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88866 888888877 677999999999999999998 8877776655544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=283.52 Aligned_cols=403 Identities=13% Similarity=0.039 Sum_probs=254.0
Q ss_pred hhHhhhhhc-----cccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 67 GAIIFIKED-----LKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 67 ~~~~~i~~~-----~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
...+++.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGS 114 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344455555 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhhcccccc--ccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHH
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIA--RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 218 (514)
|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+. ++.+||+.|++.++..++..+
T Consensus 115 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 115 IILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 777888899999999999999999854 457999999997766665555
Q ss_pred HHhhc-cCCh----hHHHHcCCHHHHHHHHHH-----------------hccChhhHHHHHHHH---HHHhccchhhhhh
Q 010273 219 ALFVI-PESP----RWLVMQGRIDEARLVLSK-----------------TNESVKEVEERLAEI---QVAAGSDNAEKNE 273 (514)
Q Consensus 219 ~~~~~-~e~~----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 273 (514)
..++. ++.. +....+.+.++.++..+. .+....+........ ...........+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence 43322 2111 000011122333222211 000000000000000 0000000000000
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
......+ + ++..+ .+......+.....+.....+.|.+.++....+....+.......+..+++.++.+++.||
T Consensus 272 ~~~~~~~--~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 272 VKVTSTE--H-LRVVS---YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -------------CTT---HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHH--H-HHHHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 0000000 0 00011 1111122222222233445567777776544442334445555778888889999999999
Q ss_pred cCCchhhh-----hhhHHHHHHHHHHHHHHHHhcCc-chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 354 VGRKPLLY-----VSTIGMTICLLSLSLSLTFLGNG-QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 354 ~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
++||+... .+..+..++..++.......... ....+. ........+.......+..+.+..|.+|++.|+++.
T Consensus 346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW-LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH-HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 99987655 55555555555544433221111 111122 222222233333344567778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
|+.+...++|..+++.+.+.+.+. ++...+.+.+++++++.++.+...++.+
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877654 5667778888777777777666555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=281.92 Aligned_cols=357 Identities=16% Similarity=0.086 Sum_probs=263.6
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
.++++..+..+++...+.+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34455566777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++. +.++.+||+.|++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL---LDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 5556799999999
Q ss_pred chHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 209 GILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 209 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
.++..++..+ ..+++||+++.. +++++.+..+ ++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~------~~~ 195 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD--------------------------------------APRTRLLTSY------KTL 195 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT--------------------------------------CCCCCTTTCS------THH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC--------------------------------------cccccHHHHH------HHH
Confidence 8877777666 466678876410 0000001111 123
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHH-
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIG- 366 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~- 366 (514)
++++.++...+..+...........+.|.++++..+.+....+.......++.+++.++.+++.||++++ ...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~ 273 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICC 273 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3344444444444444445555667778887774444555667777778888899999999999988762 2222222
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 367 MTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
..++...+....... ...+. ........++......+....+..|..| ++|+++.|+.+...++|..++|.+.+
T Consensus 274 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 274 LLAGLLMWIPDWFGV----MNVWT-LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp HHTSSSSSHHHHHHH----HHHHH-HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHHHHhhhcc----ccHHH-HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111000 00111 1112222223333445677788889988 89999999999999999999999999
Q ss_pred HHHhhhhcCcEehh
Q 010273 447 SVSHAITVGGTFFV 460 (514)
Q Consensus 447 ~~~~~~g~~~~~~~ 460 (514)
.+.+..++...+.+
T Consensus 348 ~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 348 MLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHH
Confidence 99887776554444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-31 Score=253.47 Aligned_cols=372 Identities=13% Similarity=0.117 Sum_probs=230.9
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHhhhhH-H
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA---AIMTLAPSF-A 135 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~ 135 (514)
......+.+| ++++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+++++. ....+++.. .
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566 4677899999999999999999999999999999999999999999988876532 222333322 1
Q ss_pred HHHHHHHHHhccccccccchhhhhhhcccc--ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPS--IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
.++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCA 177 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHH
Confidence 245567777777766665555666666544 355767777777778888899988887543 48999999877666
Q ss_pred HHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHH
Q 010273 214 VFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLI 293 (514)
Q Consensus 214 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
++..+..++.+|+++. +.+.+ ++. +.++++.....+++.+++ +......
T Consensus 178 ~~~~~~~~~~~~~~~~---~~~~~-----------~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~- 226 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPS---SATVA-----------NAV---------------GANHSAFSLKLALELFRQ-PKLWFLS- 226 (417)
T ss_dssp TTHHHHSCSSCCCCSC---SSCSS-----------SSS---------------SSCCCCCCHHHHHHHTTC-HHHHHHH-
T ss_pred HHHHHHHHHcCccccc---ccccc-----------ccc---------------ccccccccHHHHHHHhcC-CchhhHH-
Confidence 5555554454443310 00000 000 000001111233445542 2221111
Q ss_pred HHHHHHHHhhhccceeeccchHHHhhhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 294 TGCGIQCFQQITGIDATVYYSPTIFKGAGIK---GNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
+..+.....+.....+.|.|+.+.... +....+.......++.+++.++.++++||++||+.+..+..+..++
T Consensus 227 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 227 ----LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 111111111222233466666554321 1233345555566778889999999999999999887776665554
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~ 449 (514)
...+... + .. +.... .....+.......+..+.+..|.+|++.|+++.|+. +....+|+.++|.+.|.+.
T Consensus 303 ~~~~~~~-----~-~~--~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 303 IIGSSFA-----T-SA--LEVVI-LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHTTC-----C-SH--HHHHH-HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHh-----c-cH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 4333211 1 11 11111 111111111122233457889999999999999994 8888999999999999999
Q ss_pred hhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 450 HAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 450 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+..|+...|.+.+++.+++.++.+...+|++
T Consensus 374 ~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 374 ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9888877888888887777776555555544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=250.27 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=136.5
Q ss_pred hhHhhhhhccc------cChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHH
Q 010273 67 GAIIFIKEDLK------ITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAP-SFAVLI 138 (514)
Q Consensus 67 ~~~~~i~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (514)
...+++.+++| .+..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.++
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34446788899 9999999999999999999999999999999 999999999999999999999999 999999
Q ss_pred HHHHHHhccccccccchhhhhhhccccccccccchh---hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSF---PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
+.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++.+. +..+||+.|++.++..++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876666 88999999999999998854 356999999998777666
Q ss_pred HHHHHhh
Q 010273 216 IALALFV 222 (514)
Q Consensus 216 ~~~~~~~ 222 (514)
..+..++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=136.97 Aligned_cols=160 Identities=18% Similarity=0.095 Sum_probs=133.7
Q ss_pred hhhhcchhHhhhh-hccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh--hhHHHHHHHHHHHH-HHHHHHHhh--hhH
Q 010273 61 DVGVMSGAIIFIK-EDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL--GRKWTIALAAIVFQ-AGAAIMTLA--PSF 134 (514)
Q Consensus 61 ~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~ 134 (514)
.........|.+. +.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP 346 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3444455666544 45999999999999999999999999999999999 99999988887777 666666666 367
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 135 AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 135 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
+.+.+..++.|++.+...+....++.|.+|+++|++++++......+ |..++|.+.+.+. +..||+..|++.++..
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV---DFFGWDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHHHHH
Confidence 78888889999998888888899999999999999999999999999 9999999998844 4568999999987777
Q ss_pred HHHHHHHhhc
Q 010273 214 VFIALALFVI 223 (514)
Q Consensus 214 ~~~~~~~~~~ 223 (514)
++..+..+++
T Consensus 424 ~~~~~~~~~~ 433 (451)
T 1pw4_A 424 ILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=125.31 Aligned_cols=153 Identities=12% Similarity=-0.089 Sum_probs=123.7
Q ss_pred cchhHh-h-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010273 65 MSGAII-F-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRL 142 (514)
Q Consensus 65 ~~~~~~-~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 142 (514)
.....| + +++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. +
T Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 355 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-T 355 (438)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-H
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-H
Confidence 333444 4 556679999999999999999999999999999999999999999999999999999988887765554 8
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhhchHHHHHHHHHHh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~~~~~~~ 221 (514)
+.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+. +..| ++..|++.++..++..+..+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH---HHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999865 888888776 55689999999998854 4556 99988876655554444433
Q ss_pred hc
Q 010273 222 VI 223 (514)
Q Consensus 222 ~~ 223 (514)
+.
T Consensus 431 ~~ 432 (438)
T 3o7q_A 431 FR 432 (438)
T ss_dssp TC
T ss_pred HH
Confidence 33
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=129.17 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhh
Q 010273 79 TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLY 158 (514)
Q Consensus 79 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 158 (514)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999999999999999998888888888888888888888888877677777889
Q ss_pred hhhccccccccccchh-hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccCCh
Q 010273 159 IAEISPSIARGSLTSF-PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPESP 227 (514)
Q Consensus 159 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~ 227 (514)
+.|.+|++.|+++.++ ++....+|..++|.+++.+. +..|++..|.+.++..++..+. +++.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH---HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 47888899999999998843 3467888888877776666555 44566654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-13 Score=132.37 Aligned_cols=168 Identities=8% Similarity=-0.036 Sum_probs=122.0
Q ss_pred HHHhhhccceeeccchHHHhhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGA-----GIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~ 372 (514)
..+.....++....+.+.|+++. .+.+....++......++..++.++.|+++|| +|||+.+..+.++..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 33333444455556777777764 55566677777788899999999999999999 8999999998888777766
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL--RAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
+..... +. +. ++......+.......+...+++.|.+|++. |+.+.++.+...++|..++|.+.+.+.+
T Consensus 101 ~~~~~~------~~--~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 101 VLALPF------GA--SA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHSCC------ST--TH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh------hH--HH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 654321 11 11 1122222333333445677788999999888 7888888999999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 451 AITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
..||+..|++.++..+++.+...+.
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888777666666554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=121.71 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=124.1
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcch
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQL 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
........|.+.++.+.+. ...++......++..++.++.|+++||+|||+.+..+..+..++.........
T Consensus 16 ~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------- 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS------- 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc-------
Confidence 3344456677776666544 45666677788999999999999999999999999998888888777766543
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHH
Q 010273 387 GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 466 (514)
...++......+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+.+.+++.+
T Consensus 88 --~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 88 --LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA 165 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222223333334444445567778889999999999999999999999999999999999988899888888887777
Q ss_pred HHHHHhhhccccCC
Q 010273 467 LSVAFVYKCVPETK 480 (514)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (514)
+..+...+..||++
T Consensus 166 ~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 166 GVTFSMARWMPETR 179 (375)
T ss_dssp HHHCCCCCSSCCCS
T ss_pred HHHHHHHHHCcccC
Confidence 76665555566554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=125.40 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=116.6
Q ss_pred cceeeccchHHHhhhcCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHH
Q 010273 306 GIDATVYYSPTIFKGAGI------KGNNELLAATVAVGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSLSLSL 378 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~ 378 (514)
.++....+.+.++.+..+ .+....++......++..++.++.|+++||+ |||+.+..+.++..++.++.....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677777765444 4555666777778899999999999999999 999999888887777766654432
Q ss_pred HHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 379 TFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL---GAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
.+ ...++......+.......+...+++.|.+|++.|+.+.++ .+...++|..++|.+.+.+.+..+|+
T Consensus 107 -----~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (524)
T 2xut_A 107 -----HS---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAA 178 (524)
T ss_dssp -----SC---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHH
T ss_pred -----cc---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 01 11222223333444445557777889999999999776666 88899999999999999999888888
Q ss_pred cEehhhHHHHHHHHHHhhh
Q 010273 456 GTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (514)
..|++.+++.++..+....
T Consensus 179 ~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 179 VAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877776666555433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-11 Score=117.08 Aligned_cols=165 Identities=17% Similarity=0.059 Sum_probs=118.5
Q ss_pred hhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-----hHHH
Q 010273 62 VGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP-----SFAV 136 (514)
Q Consensus 62 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~ 136 (514)
...+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 33444566778888888888888888888899999999999999999999999999998888877665432 1222
Q ss_pred HHHH-HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC---CCCccchhhHhhchHH
Q 010273 137 LIIG-RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL---PAHINWRVMLGVGILP 212 (514)
Q Consensus 137 ~~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~---~~~~~Wr~~f~~~~~~ 212 (514)
++.. -+..+.+. ...+....+.+|.+|.+.|++++++......+|..+++.+.+.+... ....++.+.|++.+.+
T Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 373 LLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222 22222222 24467788999999999999999999999999988887666553210 1123556677776666
Q ss_pred HHHHHH-HHhhccCCh
Q 010273 213 SVFIAL-ALFVIPESP 227 (514)
Q Consensus 213 ~~~~~~-~~~~~~e~~ 227 (514)
+++..+ .++++||+.
T Consensus 452 ~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 452 GVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHheecCCC
Confidence 665555 478899996
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 514 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-04 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 19/201 (9%), Positives = 61/201 (30%), Gaps = 5/201 (2%)
Query: 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLA 100
+ + + + S + + + + +++
Sbjct: 219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFF 278
Query: 101 GGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIA 160
+ +G K + LA + + A S ++I + L + F ++ YI
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 161 EISPSIARGSLTSFPEIFINLGILLGY-ISNYAFSRLPAHINWR-VMLGVGILPSVFIAL 218
++ + L + + I ++ L +G++ F +
Sbjct: 339 SQFEVRFSATIYL---VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395
Query: 219 ALFVIPESPRWLVMQGRIDEA 239
++F + +++ +++E
Sbjct: 396 SVFTLSGPGPLSLLRRQVNEV 416
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.53 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.34 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-41 Score=327.57 Aligned_cols=407 Identities=14% Similarity=0.040 Sum_probs=290.0
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAI 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 119 (514)
.++++|.++..++++.+..++++..++.+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4556788888888888888889999999999886 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc
Q 010273 120 VFQAGAAIMTLAP----SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR 195 (514)
Q Consensus 120 ~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~ 195 (514)
+.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999998774 778999999999999999999999999999999999999999999999999999988776432
Q ss_pred CCCCccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 196 LPAHINWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 196 ~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
...+||+.|++.+++.++..++ +++++|+|+........+. ..+..++.. +..+++...+
T Consensus 178 --~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~~ 238 (447)
T d1pw4a_ 178 --WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDYN------EKAEQELTAK 238 (447)
T ss_dssp --HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------CCT
T ss_pred --hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhcccchh------hccccccchh
Confidence 2348999999977776665555 5566666642111110000 000000000 0000111122
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
+...+..++ ++.++......++.....+....+.|.++.+..+.+....+.......+..+++.++.|++.||+
T Consensus 239 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 239 QIFMQYVLP------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHc------CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc
Confidence 223333333 33344444444444444556677889999888777777778888888899999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHH
Q 010273 355 GRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGS 434 (514)
Q Consensus 355 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 434 (514)
+|++..........+........... .....+. ........++...+..+....+..|.+|++.|+++.|+.+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (447)
T d1pw4a_ 313 FRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388 (447)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHH-HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHHhc---ccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 98765554444333332222221111 1111122 2222222333344445566778899999999999999999988
Q ss_pred HHHH-HHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 435 RVSS-GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 435 ~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
++++ .++|.+.|.+.+..|+...+++.+++.+++.++.+...
T Consensus 389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8854 56789999999999988888888777777766655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.3e-30 Score=246.65 Aligned_cols=381 Identities=14% Similarity=0.120 Sum_probs=244.2
Q ss_pred hhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 57 LLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
+..+......+.+|. +++++|+|++++|++.+++.+++.++++++|+++||+|||++++++..+..++.++..+..+..
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T d1pv7a_ 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334466667777774 7888999999999999999999999999999999999999999999999999998888876655
Q ss_pred HH----HHHHHHHhccccccccchhhhhhhcccc--ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 136 VL----IIGRLLAGVGIGFGVMIAPLYIAEISPS--IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 136 ~~----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
.. ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.. .+|+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 173 (417)
T d1pv7a_ 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLG 173 (417)
T ss_dssp HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccch
Confidence 43 4555666666555555555444444433 345566777888888888999998887543 3666666654
Q ss_pred h-HHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 I-LPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
. ...+...+..+..+|+++.. .+.++.+ + ..+........+..+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------------------~-~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 174 SGCALILAVLLFFAKTDAPSSA---TVANAVG--------------------------A-NHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHSSCCCSCSSS---CSSHHHH--------------------------S-CCCCCCHHHHHHHTTSSHHH
T ss_pred hhHHHHHHHHHHHHhcccccch---hhhhhhh--------------------------h-hccccccccccccccccccc
Confidence 4 44444555566677766310 0000000 0 00111111222222212111
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhc---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGA---GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
. ........... .. ......+.+.... ...+....+.......++..++..+.+++.||.++|+.+..+..
T Consensus 224 ~-~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 297 (417)
T d1pv7a_ 224 F-LSLYVIGVSCT-YD----VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297 (417)
T ss_dssp H-HHHHHHHHHHH-HH----HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHH
T ss_pred c-hhhhhHHHHHH-HH----hhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHH
Confidence 1 11111111111 11 1111112222111 11223344455566778888899999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSGAIAMS 444 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~ 444 (514)
+..++.+.+..... ...........++......+...++..|.+|++.|+++.|+. +....+|..++|.+
T Consensus 298 ~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 368 (417)
T d1pv7a_ 298 IMSVRIIGSSFATS---------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHTCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhhhccccccc---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655543221 111222222223333334466778899999999999999986 45677899999999
Q ss_pred HHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHHH
Q 010273 445 FLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQ 486 (514)
Q Consensus 445 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (514)
.|.+.|..|++..+++.+++.++..++..+.++++++.+..+
T Consensus 369 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999988999998888888887777777666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.6e-15 Score=140.94 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=133.4
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVG 147 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 147 (514)
..+...++.+.+....+...+...++..++..+.+++.||+|+|+++..+.++.+++.++.++.++.+.+++..++.|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence 33344555566777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccccccccccchhh-HHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccC
Q 010273 148 IGFGVMIAPLYIAEISPSIARGSLTSFP-EIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPE 225 (514)
Q Consensus 148 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e 225 (514)
.+...+...+++.|.+|+++|+++.++. .....+|..++|.+++.+ .++.||+..|++.++..++..++ .+.+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM---YESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999975 566789999999999884 45679999999877777666555 444544
Q ss_pred C
Q 010273 226 S 226 (514)
Q Consensus 226 ~ 226 (514)
+
T Consensus 403 ~ 403 (417)
T d1pv7a_ 403 P 403 (417)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.4e-12 Score=124.46 Aligned_cols=151 Identities=20% Similarity=0.140 Sum_probs=115.6
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHh--hhhHHHHHHHHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA---GAAIMTL--APSFAVLIIGRL 142 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~r~ 142 (514)
....+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+ +.++... ..+.+...+.-+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34467788999999999999999999999999999999999976543333333222 2222222 356777788888
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
+.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+.+ .++.||+..|++.+...++..++..
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~---~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT---VDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHH
Confidence 889988888888999999999999999999998877766 567788888874 4467999999886666665555433
|