Citrus Sinensis ID: 010276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHcHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEVPKEQITALIDQGLYDSAQMLGCFLVsssaingetsphlkaENLIILGDSLFRDREYRRAIHTYKQALQYYKivpkqnstssrsslstsnrssspnsfnvsainENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRnsrhnrgavACYKECLRHCPFFIEAITALAELGATPKDIISLFAqtpnrsgrapfdhldssrwLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDllsidpsrpEVFVALSVLWERKDERGALSYAEKSIriderhipgyimkgnlllsmkRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGdvhasnasgrEKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Flexible Loop (DISEMBL)
MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGetsphlkaenLIILGDSLFRDREYRRAIHTYKQALQYYkivpkqnstssrsslstsnrssspnsfnVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDeailnfekvrsiDPYIMTYMDEYAMLLKVKCDYSKLSKLVHdllsidpsrpEVFVALSVLwerkdergalsyaeksiriderhipgYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHasnasgreKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Low Complexity Region (SEG)
MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQnstssrsslstsnrssspnsfnvsAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYlgaalalaelHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Disordered region (IsUnstruct)
*******ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIV***************************AINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP****RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAR*******************************KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSH*******
Disordered Region (DISOPRED)
***PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Disordered Region (DISEMBL)
MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPK*********************FNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Disordered Region (DISPRO)
*EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q8VY89	558	Anaphase-promoting comple	yes	no	0.994	0.915	0.752	0.0
Q9UJX3	599	Anaphase-promoting comple	no	no	0.898	0.771	0.315	5e-55
Q9WVM3	565	Anaphase-promoting comple	yes	no	0.898	0.817	0.313	1e-53
Q54D58	580	Anaphase-promoting comple	yes	no	0.949	0.841	0.275	3e-49
Q9UJX2	597	Cell division cycle prote	no	no	0.478	0.412	0.272	2e-14
A1A4R8	597	Cell division cycle prote	no	no	0.478	0.412	0.272	2e-14
Q8BGZ4	597	Cell division cycle prote	no	no	0.478	0.412	0.268	7e-14
O94556	565	Anaphase-promoting comple	yes	no	0.715	0.651	0.218	2e-13
Q9STS3	579	Anaphase-promoting comple	no	no	0.498	0.442	0.251	2e-11
P38042	758	Anaphase-promoting comple	yes	no	0.509	0.345	0.233	2e-09

>sp|Q8VY89|APC7_ARATH Anaphase-promoting complex subunit 7 OS=Arabidopsis thaliana GN=APC7 PE=2 SV=1

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/514 (75%), Positives = 442/514 (85%), Gaps = 3/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPKEQI  LI+ GLYDSA+MLGCFLVSS  ++ ETSP LKAENLI+LGD+LF  RE+R
Sbjct: 1   MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQAL +Y  +PKQ+S  SRSS  + +  SS N+ ++SAINENEV++KIAS HFA
Sbjct: 61  RAIHTYKQALHHYTRIPKQSSGISRSS-LSLSTRSSVNASSISAINENEVRFKIASSHFA 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L ETKAAI EME +  K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+  
Sbjct: 120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG + KDIIS F QT NRS +   D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct: 178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct: 238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           +L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct: 298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L  KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct: 358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHA  +SGREKAKKFYES LRLEPGYLGA LALAELH++EGRNGDAVSLLERYLK
Sbjct: 418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           D+ADDSLHVKLAQVFAATNMLQ++LSH++AALR+
Sbjct: 478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRI 511

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9UJX3|APC7_HUMAN Anaphase-promoting complex subunit 7 OS=Homo sapiens GN=ANAPC7 PE=1 SV=4

 Score =  216 bits (549), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 242/482 (50%), Gaps = 20/482 (4%)

Query: 38  SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97
           SP  K + L+   DSLF D+EYR A+  Y  ALQ  K + K    +S+   ST N +S+P
Sbjct: 72  SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK----TSKVRPSTGNSASTP 127

Query: 98  NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN 157
            S  + +  E EVKYK+A C+  L + K AI  ++GIPS+ R  ++++++A LY+ +   
Sbjct: 128 QSQCLPS--EIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQE 185

Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217
           R +V  YKE LR CP  ++AI  L  L     ++ S+   T N     P  +LD   WL 
Sbjct: 186 RPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASM---TMNVIQTVP--NLD---WLS 237

Query: 218 RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
            +++A   + + D    +     L ++    +N+ +L  +A +    G N  ++L FE+ 
Sbjct: 238 VWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQA 297

Query: 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDER 333
           + +DPY++  MD Y  LL  +     +  L   L +I    + P V       + ++  R
Sbjct: 298 QMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSR 357

Query: 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHS 392
            AL    K+I+++   +   ++KG  L +M R + A+I FR A  L P  L  Y+GL+  
Sbjct: 358 -ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIEC 416

Query: 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452
           YL  + ++EA+  A    K +  +A+ L L+  V   +   +EKAK   + AL   P Y+
Sbjct: 417 YLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYI 476

Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
            A +  AEL   E +  D ++LL   L + +D  LH  L     A N  QEA+  Y  AL
Sbjct: 477 KAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIAL 536

Query: 513 RL 514
            L
Sbjct: 537 SL 538

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q9WVM3|APC7_MOUSE Anaphase-promoting complex subunit 7 OS=Mus musculus GN=Anapc7 PE=2 SV=3

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 241/482 (50%), Gaps = 20/482 (4%)

Query: 38  SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97
           SP  K + L+   DSLF D+EYR A+  Y  ALQ  K + K    +S+   ST N +S+P
Sbjct: 38  SPSQKYQLLVYHADSLFHDKEYRNAVSKYAMALQQKKALSK----TSKVRPSTGNSASTP 93

Query: 98  NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN 157
            S  + +  E EVKYK+A C+  L   K AI  ++GIPS+ R  ++++++A LY+ +   
Sbjct: 94  QSQCLPS--EIEVKYKMAECYTMLKLDKDAIAVLDGIPSRQRTPKINMMLANLYKKAGQE 151

Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217
           R +V  YKE LR CP  ++AI  L  L     ++ S+   T N     P  +LD   WL 
Sbjct: 152 RPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASM---TMNVIQTVP--NLD---WLS 203

Query: 218 RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
            +++A   + + D    +     L ++    +N+ +L  +A +    G +  ++L FE+ 
Sbjct: 204 VWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDSKNSVLKFEQA 263

Query: 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDER 333
           + +DPY++  MD Y  LL  +     +  L   L +I    + P V       + ++  R
Sbjct: 264 QMLDPYLIRGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSR 323

Query: 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHS 392
            AL    K+I+++   +   ++KG  L +M R + A+I FR A  L P  L  Y+GL+  
Sbjct: 324 -ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIEC 382

Query: 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452
           YL  + ++EA+  A    K +  +A+ L L+  V   +   +EKAK   + AL   P Y+
Sbjct: 383 YLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALAQRPDYV 442

Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
            A +  AEL   E +  D ++LL   L + +D  LH  L     A N  QEA+  Y  AL
Sbjct: 443 KAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIAL 502

Query: 513 RL 514
            L
Sbjct: 503 SL 504

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|Q54D58|APC7_DICDI Anaphase-promoting complex subunit 7 OS=Dictyostelium discoideum GN=anapc7 PE=3 SV=1

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 267/516 (51%), Gaps = 28/516 (5%)

Query: 11  LIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQAL 70
           L++   + SA+ LG F++S    N + +PH    +  + GDSLF   E+ R++  +KQ+L
Sbjct: 20  LVESKQFSSAEFLGNFVISVP--NQQKTPHQNIISFSLFGDSLFGKNEFVRSLKYFKQSL 77

Query: 71  QYYKIVPKQNSTSSRSSLSTSNRSSSPN-SFNVSAINENEVKYKIASCHFALGETKAAIV 129
               I+ K  +  + ++ + + ++   N  F      E E+KYKI+ C+  +     AI 
Sbjct: 78  D---ILFKVYNNPNNNNNNNNKQADFDNKQF------EYELKYKISLCYIKINRNNLAIS 128

Query: 130 EMEGIPSKARNLQMSLLMAKLYRN--SRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187
            +E IP  +R L   L +A+LY++     ++  +  YKE ++ CP  +EAI +L E+G  
Sbjct: 129 YLESIPFSSRGLDTHLTIARLYKDIGKEKSKECIISYKEVIKLCPLCLEAINSLKEMGEN 188

Query: 188 PKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243
              +    I+ F Q  N         L    W+     +Q  +  N  +  L L  ++  
Sbjct: 189 VDQVLIPSINKFQQKNNSFNSNNIIDLS---WISLLSMSQYEMKRNQPEKSLILLKKVES 245

Query: 244 RFPNNIHILLEMAKVDAIIGKNDEAILN----FEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
           +F  N+++L ++A   + +  ++ +I+N    F+K+R +DPY +  MD +  LLK +   
Sbjct: 246 KFSTNLYVLEKLAL--SYLYHDEPSIINTFNIFQKIRLLDPYYIGSMDIFCSLLKRRSLQ 303

Query: 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGN 358
            +L+K+ +DL++ +P   E + ++++ +  K+    +L   +++I I E H   + +KG 
Sbjct: 304 FELNKVCNDLVASNPYCAETWTSVALFYFLKENVEKSLENVDRAISIKESHEFAHSLKGE 363

Query: 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418
           +LLS+  P  A+ +   A +L  ++ + + LV  +L  +++KEAL  A       P  +K
Sbjct: 364 ILLSLDEPREALPSLERAFQLSKNILTARELVRCHLILNQMKEALVVAETINNLSPDYSK 423

Query: 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478
            + L+G V A+    RE+A+K    AL L P      L L++L+V+EGR  +A+ +L   
Sbjct: 424 TMALLGMVLANQPEEREEARKILTKALTLSPHCTDTVLTLSKLNVVEGRFQEAIDILNSQ 483

Query: 479 LKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           L+    D +H ++A V+   +  ++A+ HY +AL +
Sbjct: 484 LEYQETDLMHTEIAGVYLTKDYHEDAMIHYNSALEI 519

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UJX2|CDC23_HUMAN Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           L+L  E LQ++ N I        +I+ ++A     I   D+A+  F ++R  DPY +  M
Sbjct: 241 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
           D ++ LL V+   S+LS L H+L  ID  R E    +   +  R     A  Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
           + R++  + + G+  + MK   AA+ A+R A E+ + D R++ GL  +Y         LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420

Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
             R A +  P  ++ L  +G+ +    +   +AKK Y  A  +      A + LA+LH  
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQ 479

Query: 465 EGRNGDAVSLLERYLKD 481
              +  A     +Y++D
Sbjct: 480 LTESEQAAQCYIKYIQD 496

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|A1A4R8|CDC23_BOVIN Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           L+L  E LQ++ N I        +I+ ++A     I   D+A+  F ++R  DPY +  M
Sbjct: 241 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
           D ++ LL V+   S+LS L H+L  ID  R E    +   +  R     A  Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
           + R++  + + G+  + MK   AA+ A+R A E+ + D R++ GL  +Y         LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420

Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
             R A +  P  ++ L  +G+ +    +   +AKK Y  A  +      A + LA+LH  
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQ 479

Query: 465 EGRNGDAVSLLERYLKD 481
              +  A     +Y++D
Sbjct: 480 LTESEQAAQCYIKYIQD 496

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Bos taurus (taxid: 9913)

>sp|Q8BGZ4|CDC23_MOUSE Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           L+L  E LQ++ + I        +I+ ++A     I   D+A+  F ++R  DPY +  M
Sbjct: 241 LQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
           D ++ LL V+   S+LS L H+L  ID  R E    +   +  R     A  Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
           + R++  + + G+  + MK   AA+ A+R A E+ + D R++ GL  +Y         LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420

Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
             R A +  P  ++ L  +G+ +    +   +AKK Y  A  +      A + LA+LH  
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKKALVKLAKLHEQ 479

Query: 465 EGRNGDAVSLLERYLKD 481
              +  A     +Y++D
Sbjct: 480 LTESEQAAQCYIKYIQD 496

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|O94556|APC8_SCHPO Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 181/411 (44%), Gaps = 43/411 (10%)

Query: 41  LKAENLIILGDSLFRDREYRRAIHTYKQA-------LQYYK--IVPKQNSTSSRSSLSTS 91
           ++ +N+ +L  S F  +E+ RA +T +         L+ Y   +  ++ S     +L  +
Sbjct: 85  VEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNT 144

Query: 92  NRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLY 151
           N + S  +     I+E      + S H+  G     ++ + G+               +Y
Sbjct: 145 NLTLSSTNREFYYISE-----VLESLHYQ-GNKDPYLLYLSGV---------------VY 183

Query: 152 RNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211
           R  + +  A+   K C+   PFF  A   L+    + + + ++ +Q P+        ++ 
Sbjct: 184 RKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFYVY 243

Query: 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271
           +S  LH+       + S+ Y+   E  AE++  FPN+ ++  + A +       DEA   
Sbjct: 244 ASHELHQ-------VNSSAYEKLAE--AEII--FPNSRYLKTQRALLTYDSRDFDEAESL 292

Query: 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331
           FE + + DPY +  MD Y+ +L V  + SKL  L     SID  RPE    +   +    
Sbjct: 293 FENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGNYYSLLS 352

Query: 332 E-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGL 389
           E   A++Y +++++++  ++  + + G+  + +K   AA+ ++R A ++ R D R++ GL
Sbjct: 353 EHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGL 412

Query: 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF 440
             +Y        ALY  + A    P   +  + +G+ +      +E  K +
Sbjct: 413 GQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQEAIKSY 463

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Has a role in promoting metaphase to anaphase transition via the ubiquitination of specific mitotic substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9STS3|CDC23_ARATH Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304
           F  + +I  + AK    + + D+  + FE++   DPY +  MD Y+ +L  K   + LS 
Sbjct: 267 FSFSNYIQAQTAKAQYSLREFDQVEIMFEELLRNDPYRVEDMDLYSNVLYAKEACAALSY 326

Query: 305 LVHDLLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363
           L H +   D  RPE    +   +  K +   A+ Y  ++++++++++  + + G+  + M
Sbjct: 327 LAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVMYFRRALKLNKKYLSAWTLMGHEYVEM 386

Query: 364 KRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422
           K   AA+ A+R A ++ P D R++ GL  +Y        AL+  R+++  +P  ++    
Sbjct: 387 KNTPAAIDAYRRAVDINPTDYRAWYGLGQAYEMMGMPFYALHYFRKSIFFLPNDSRLWIA 446

Query: 423 VGDVHASNA-SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481
           +   + +      E+A K Y+ A+        A   LA+LH   GRN +A    E+ L+ 
Sbjct: 447 MAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIALNQLAKLHQKLGRNEEAAYYFEKDLER 506

Query: 482 WADDSL---HVKLAQVFAATNM 500
              + L   ++  A VF AT+ 
Sbjct: 507 MDAEGLEGPNMFEALVFLATHF 528

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.

Arabidopsis thaliana (taxid: 3702)

>sp|P38042|CDC27_YEAST Anaphase-promoting complex subunit CDC27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC27 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 4/266 (1%)

Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
           L+++ K+   I   D ++  F +++ + P  +  M+ ++ LL    D  K S L + L+ 
Sbjct: 475 LVQLGKLHFEIINYDMSLKYFNRLKDLQPARVKDMEIFSTLLWHLHDKVKSSNLANGLMD 534

Query: 312 IDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
             P++PE +  + ++L  +KD   A+   EK+ ++D      Y ++G+   S    ++A 
Sbjct: 535 TMPNKPETWCCIGNLLSLQKDHDAAIKAFEKATQLDPNFAYAYTLQGHEHSSNDSSDSAK 594

Query: 371 IAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429
             +R A    P    +Y GL  S ++  + +EAL    +A    P +   +   G     
Sbjct: 595 TCYRKALACDPQHYNAYYGLGTSAMKLGQYEEALLYFEKARSINPVNVVLICCCGG-SLE 653

Query: 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSL-H 488
               +EKA ++YE A  L+P    +   + +L     R   A+   E  +K   DD+  H
Sbjct: 654 KLGYKEKALQYYELACHLQPTSSLSKYKMGQLLYSMTRYNVALQTFEELVKLVPDDATAH 713

Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
             L Q +      ++A+     A+ L
Sbjct: 714 YLLGQTYRIVGRKKDAIKELTVAMNL 739

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
255551679	558	anaphase promoting complex subunit, puta	0.994	0.915	0.863	0.0
225432356	560	PREDICTED: anaphase-promoting complex su	0.998	0.916	0.836	0.0
449524842	560	PREDICTED: LOW QUALITY PROTEIN: anaphase	0.998	0.916	0.834	0.0
224123146	559	predicted protein [Populus trichocarpa]	0.996	0.915	0.838	0.0
449450662	560	PREDICTED: LOW QUALITY PROTEIN: anaphase	0.998	0.916	0.826	0.0
224107381	559	predicted protein [Populus trichocarpa]	0.996	0.915	0.838	0.0
356549081	560	PREDICTED: anaphase-promoting complex su	0.998	0.916	0.830	0.0
356555540	560	PREDICTED: anaphase-promoting complex su	0.998	0.916	0.832	0.0
357447381	560	Anaphase-promoting complex subunit [Medi	0.998	0.916	0.819	0.0
79324760	514	anaphase-promoting complex subunit 7 [Ar	0.994	0.994	0.752	0.0

>gi|255551679|ref|XP_002516885.1| anaphase promoting complex subunit, putative [Ricinus communis] gi|223543973|gb|EEF45499.1| anaphase promoting complex subunit, putative [Ricinus communis]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/514 (86%), Positives = 484/514 (94%), Gaps = 3/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           ME+PK+QITAL+D GLY SAQMLGCFLVSSS++N ETSPHLKAENLI LGD+LFR+RE+R
Sbjct: 1   MEIPKDQITALLDHGLYSSAQMLGCFLVSSSSVNPETSPHLKAENLIFLGDALFREREFR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQYYKI+PKQNSTSSR+    SNRSSSPNSFN S INENEVK+KIASC  A
Sbjct: 61  RAIHTYKQALQYYKIIPKQNSTSSRT---LSNRSSSPNSFNFSPINENEVKFKIASCLSA 117

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L ET+AA+VEMEGIPSKAR LQMSLLMAKLYRNSRHNR A+AC+KECLRHCP+ IEAI A
Sbjct: 118 LNETRAALVEMEGIPSKARTLQMSLLMAKLYRNSRHNRFAIACFKECLRHCPYVIEAIIA 177

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG + KDIIS+F+Q  N+SGRA FDH+DS+RWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 178 LAELGVSAKDIISVFSQASNKSGRASFDHVDSNRWLQRYVEAQCCIASNDYKGGLELFGE 237

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNN+HILLE+AKV+AIIGKNDEAI+NFEKVRS+DPY++T MDEYAMLLK+K D+S
Sbjct: 238 LLQRFPNNVHILLEIAKVEAIIGKNDEAIMNFEKVRSLDPYVVTSMDEYAMLLKLKSDFS 297

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLLSIDP+RPEVFVALSVLWERKDERGAL+YAEKSIRID+RHIPGYIMKGNLL
Sbjct: 298 KLNKLVHDLLSIDPTRPEVFVALSVLWERKDERGALTYAEKSIRIDDRHIPGYIMKGNLL 357

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           LS+KRPEAAVIAFRGAQELRPDLRSYQGLVHSYL FSK+KEAL AAREAMKAMPQSAKAL
Sbjct: 358 LSLKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLAFSKIKEALLAAREAMKAMPQSAKAL 417

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGD HASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 418 KLVGDAHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 477

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNML EALSHY+AALR+
Sbjct: 478 DWADDSLHVKLAQVFAATNMLPEALSHYQAALRI 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432356|ref|XP_002275310.1| PREDICTED: anaphase-promoting complex subunit 7 [Vitis vinifera] gi|297736897|emb|CBI26098.3| unnamed protein product [Vitis vinifera]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/514 (83%), Positives = 479/514 (93%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           M+VP++Q+T L++ GLY SAQMLGCFLVSSSA+N ETSPH+KAE+L++LGD+LFR+RE+R
Sbjct: 1   MDVPRDQVTTLMEHGLYTSAQMLGCFLVSSSAVNPETSPHIKAESLVLLGDALFREREHR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQ+YKI+P+QNST+ R SLSTSNRSSSPNSFN+SAINENEVK+KIASCH A
Sbjct: 61  RAIHTYKQALQHYKIIPRQNSTT-RISLSTSNRSSSPNSFNISAINENEVKFKIASCHCA 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           + E  AA+ EMEGIPSKARNLQM+LLM KL+RNSR NR A+ACYKECLRHCP+ IEAI A
Sbjct: 120 INENVAALAEMEGIPSKARNLQMNLLMGKLHRNSRQNRAAIACYKECLRHCPYVIEAIIA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG T KDI+SLF QTPNRSGR PFDH DSSRWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 180 LAELGVTAKDILSLFPQTPNRSGRPPFDHFDSSRWLQRYVEAQCCIASNDYKGGLELFTE 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIHILLE+AKV+AIIGKNDEAI+NFEK RSIDP+I+TYMDEYAMLL +K D+ 
Sbjct: 240 LLQRFPNNIHILLEIAKVEAIIGKNDEAIMNFEKARSIDPHIITYMDEYAMLLMIKSDHL 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLLSIDP+RPEVFVALSV+WERK+ERGALSYAEKSIRIDERHIPGYIMKGNL 
Sbjct: 300 KLNKLVHDLLSIDPTRPEVFVALSVVWERKEERGALSYAEKSIRIDERHIPGYIMKGNLY 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           LSM RP+AAV+AFRGAQEL+PDLRSYQGLV SYL  SK+KEALY AREAMKAMPQSAKAL
Sbjct: 360 LSMNRPDAAVVAFRGAQELKPDLRSYQGLVRSYLALSKIKEALYVAREAMKAMPQSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHV+EGR GDA+SLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVMEGRTGDAISLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQ+ALSHY++ALR+
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQDALSHYQSALRI 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524842|ref|XP_004169430.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7-like [Cucumis sativus]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/514 (83%), Positives = 476/514 (92%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPK+QI+ L+DQGLY SAQMLGCFLVSS A N E++PHLK+E+L++LGD+LFR+REYR
Sbjct: 1   MEVPKDQISTLLDQGLYSSAQMLGCFLVSSPAANAESTPHLKSESLVLLGDALFREREYR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQYYKI+PKQNST++RSS   SNRSSSPNSFNVSAINENEVK+KIASC+ A
Sbjct: 61  RAIHTYKQALQYYKIIPKQNSTTTRSS-LQSNRSSSPNSFNVSAINENEVKFKIASCYCA 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L + +AA+VEMEGIPSKARNLQM+LL+ KLYR +RHNR A+A YKECLRHCP+  EAI A
Sbjct: 120 LSDNRAALVEMEGIPSKARNLQMNLLLGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG T KDIISLF QT NRSG+ PFDH DS+RWL RYVEAQCCIASNDYKGGLELF +
Sbjct: 180 LAELGTTAKDIISLFPQTANRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLD 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIH+LLE+AKV+AIIGK DEAI+NFEK RSIDP+I+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNIHLLLEVAKVEAIIGKXDEAIMNFEKARSIDPFIVTYMDEYAMLLKIKSDYS 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
            L+KLVHDLL+IDP+RPEVFVALSVLWE KDERGAL+YAEKSIRIDERHI G+IMKGNLL
Sbjct: 300 MLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALAYAEKSIRIDERHITGFIMKGNLL 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L+MK+P+AAV AFR AQELRPD+RSYQGLVHSYL  SK+KEALYAAREAMKAMP SAKAL
Sbjct: 360 LAMKQPDAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPHSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRM 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123146|ref|XP_002330350.1| predicted protein [Populus trichocarpa] gi|222871554|gb|EEF08685.1| predicted protein [Populus trichocarpa]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/514 (83%), Positives = 474/514 (92%), Gaps = 2/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           M+VPK+QITAL+D  LY+SAQ+LG FLVSS+ ++ ETSP LKAEN I+LGD+LFR+RE+R
Sbjct: 1   MDVPKDQITALLDHELYNSAQILGSFLVSSATVSLETSPQLKAENQILLGDALFREREFR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQAL YYKI+PKQ+ST+SRSSLS  + S +  SFN+SAINENEVK+KIASCH  
Sbjct: 61  RAIHTYKQALHYYKIIPKQSSTTSRSSLSNRSSSPN--SFNISAINENEVKFKIASCHAT 118

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L ET+AA+VEMEGIPSKAR LQMSLLMAKLYR+SRH R A+ CYKECLRHCPF IEAI A
Sbjct: 119 LNETRAALVEMEGIPSKARTLQMSLLMAKLYRSSRHTRLAITCYKECLRHCPFVIEAIVA 178

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG   KD+ISLF+Q  NRSGRAP DH DS+RWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 179 LAELGVAAKDVISLFSQVSNRSGRAPLDHTDSTRWLQRYVEAQCCIASNDYKGGLELFGE 238

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIHILLE+A+ +AIIGKNDEAI+NFEKVRSIDPY++TYMDEYAMLLK K D+S
Sbjct: 239 LLQRFPNNIHILLEIARAEAIIGKNDEAIMNFEKVRSIDPYVVTYMDEYAMLLKTKGDFS 298

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLLSIDP+RPE+FVALSVLWE+KDE GALSYAEKSIRIDERHIPGYIMKG LL
Sbjct: 299 KLNKLVHDLLSIDPTRPEIFVALSVLWEKKDEIGALSYAEKSIRIDERHIPGYIMKGTLL 358

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           LS+KRPEAAVIAFRGAQELR DLRSYQGLVHSYL FSK+KEAL+AAREAMKAMPQSAKAL
Sbjct: 359 LSLKRPEAAVIAFRGAQELRADLRSYQGLVHSYLAFSKIKEALHAAREAMKAMPQSAKAL 418

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 419 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 478

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+
Sbjct: 479 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRI 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450662|ref|XP_004143081.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7-like [Cucumis sativus]

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/514 (82%), Positives = 474/514 (92%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPK+QI+ L+DQGLY SAQMLGCFLVSS A N E++PHLK+E+L++LGD+LFR+REYR
Sbjct: 1   MEVPKDQISTLLDQGLYSSAQMLGCFLVSSPAANAESTPHLKSESLVLLGDALFREREYR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAI ++ QALQYYKI+PKQNST++RSS   SNRSSSPNSFNVSAINENEVK+KIASC+ A
Sbjct: 61  RAIVSFXQALQYYKIIPKQNSTTTRSS-LQSNRSSSPNSFNVSAINENEVKFKIASCYCA 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L + +AA+VEMEGIPSKARNLQM+LL+ KLYR +RHNR A+A YKECLRHCP+  EAI A
Sbjct: 120 LSDNRAALVEMEGIPSKARNLQMNLLLGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG T KDIISLF QT NRSG+ PFDH DS+RWL RYVEAQCCIASNDYKGGLELF +
Sbjct: 180 LAELGTTAKDIISLFPQTANRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLD 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIH+LLE+AKV+AIIGK DEAI+NFEK RSIDP+I+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNIHLLLEVAKVEAIIGKKDEAIMNFEKARSIDPFIVTYMDEYAMLLKIKSDYS 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
            L+KLVHDLL+IDP+RPEVFVALSVLWE KDERGAL+YAEKSIRIDERHI G+IMKGNLL
Sbjct: 300 MLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALAYAEKSIRIDERHITGFIMKGNLL 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L+MK+P+AAV AFR AQELRPD+RSYQGLVHSYL  SK+KEALYAAREAMKAMP SAKAL
Sbjct: 360 LAMKQPDAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPHSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRM 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107381|ref|XP_002314465.1| predicted protein [Populus trichocarpa] gi|222863505|gb|EEF00636.1| predicted protein [Populus trichocarpa]

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/514 (83%), Positives = 474/514 (92%), Gaps = 2/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           M+VPK+QITAL+D  LY+SAQ+LGCFLVSSS ++ ETSP LKAEN I+LGD+LFRDRE+R
Sbjct: 1   MDVPKDQITALLDNQLYNSAQILGCFLVSSSTVSLETSPQLKAENQILLGDALFRDREFR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQAL Y KI+PKQ+ST+SRSSLS  + S +  SFN+SAINENEVK+KIASCH A
Sbjct: 61  RAIHTYKQALHYCKIIPKQSSTTSRSSLSNRSSSPN--SFNISAINENEVKFKIASCHSA 118

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           + ET+AA+VEMEGIPSKAR LQMSLLMAKLYR+SRH R A+ CYKECLRHCPF IEAI A
Sbjct: 119 MNETRAALVEMEGIPSKARTLQMSLLMAKLYRSSRHTRFAITCYKECLRHCPFVIEAIIA 178

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG   KDIISLF Q  NRSGRAP DH DS+RW+ RYVEAQCCIASNDYKGGL+LFAE
Sbjct: 179 LAELGVAAKDIISLFLQASNRSGRAPLDHTDSTRWVQRYVEAQCCIASNDYKGGLDLFAE 238

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFP+NIH+LLE+AKV AIIGKNDEA++NFEKVRSIDPYI+TYMDEYAMLLK K D+S
Sbjct: 239 LLQRFPHNIHVLLEIAKVQAIIGKNDEALMNFEKVRSIDPYIVTYMDEYAMLLKTKGDFS 298

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLLSIDP+RPEVFVALSVLWE+KDERGALSYAEKS RIDERHI GYIMKG LL
Sbjct: 299 KLNKLVHDLLSIDPTRPEVFVALSVLWEKKDERGALSYAEKSTRIDERHILGYIMKGTLL 358

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           LS+KRPEAAVIAFRGAQELR DLRSYQGLVHSYL FSK+KEAL+AAREAMKAMPQSAKAL
Sbjct: 359 LSLKRPEAAVIAFRGAQELRADLRSYQGLVHSYLAFSKIKEALHAAREAMKAMPQSAKAL 418

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 419 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 478

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEA+SHY++ALR+
Sbjct: 479 DWADDSLHVKLAQVFAATNMLQEAMSHYQSALRI 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549081|ref|XP_003542926.1| PREDICTED: anaphase-promoting complex subunit 7-like [Glycine max]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/514 (83%), Positives = 472/514 (91%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPK+QI  L++ GLY+SAQMLGCFLVSS A+N E++PHLK E+L++LGDS FR+REYR
Sbjct: 1   MEVPKDQIATLLEHGLYNSAQMLGCFLVSSPAVNAESAPHLKTESLVLLGDSFFREREYR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQ YK++PKQN TSSRSSLS++  SS  NS N S INENEVK+KIASCH  
Sbjct: 61  RAIHTYKQALQCYKMIPKQNMTSSRSSLSSNRSSSP-NSCNGSVINENEVKFKIASCHSF 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L E KAA+VEMEGIPSKARNL M+LL+ +LYR SRH+R AVA YKECLRHCP+ +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGRLYRISRHSRAAVAIYKECLRHCPYVLEAITA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG+T KDIISL  QT NRSGRAPFDH DSSRWL RYVEAQCC+ASNDYKGGLELFA+
Sbjct: 180 LAELGSTAKDIISLIPQTLNRSGRAPFDHTDSSRWLQRYVEAQCCMASNDYKGGLELFAD 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIHI+LEMAKV+AIIGKN+EAI+NFEK RSIDPYI+TYMDEYAMLLK+K DY 
Sbjct: 240 LLQRFPNNIHIILEMAKVEAIIGKNEEAIMNFEKARSIDPYIVTYMDEYAMLLKLKSDYP 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ AL YAE+S+RIDERHIPGYIMKGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKKALQYAEQSVRIDERHIPGYIMKGNLL 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L+MKR EAAV AFR AQELRPD+RSYQGLVH+YL  SK+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRAEAAVPAFRAAQELRPDIRSYQGLVHTYLALSKIKEALYASREAMKAMPQSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEALSHY+AALRL
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRL 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555540|ref|XP_003546089.1| PREDICTED: anaphase-promoting complex subunit 7-like [Glycine max]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/514 (83%), Positives = 471/514 (91%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPK+QI  L++ GLY+SAQMLGCFLVSS A+N E++ HLK E+L++LGDS FR+REYR
Sbjct: 1   MEVPKDQIATLLEHGLYNSAQMLGCFLVSSPAVNAESAAHLKTESLVLLGDSFFREREYR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQ YK++PKQN TSSRSSLS++  SS  NS N S INENEVK+KIASCH  
Sbjct: 61  RAIHTYKQALQCYKMIPKQNMTSSRSSLSSNRSSSP-NSCNGSVINENEVKFKIASCHCF 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L E KAA+VEMEGIPSKARNL M+LL+ KLYR SRH+R AVA YKECLRHCPF +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGKLYRISRHSRAAVAIYKECLRHCPFVLEAITA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG+T KDII+L  QTPNRSGRA FDH DSSRWL RYVEAQCC+ASNDYKGGLELFA+
Sbjct: 180 LAELGSTAKDIITLIPQTPNRSGRASFDHTDSSRWLQRYVEAQCCMASNDYKGGLELFAD 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNNIH+LLEMAKV+AIIGKN+EAI+NFEK RSIDPYI+TYMDEYAMLLK+K DY 
Sbjct: 240 LLQRFPNNIHLLLEMAKVEAIIGKNEEAIMNFEKARSIDPYIITYMDEYAMLLKLKSDYP 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ AL YAE+SIRIDERHIPGYIMKGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKKALQYAEQSIRIDERHIPGYIMKGNLL 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L+MKR EAAV AFR AQELRPD+RSYQGLVH+YL  SK+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRAEAAVPAFRAAQELRPDIRSYQGLVHTYLALSKIKEALYASREAMKAMPQSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNMLQEALSHY+AALRL
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRL 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447381|ref|XP_003593966.1| Anaphase-promoting complex subunit [Medicago truncatula] gi|355483014|gb|AES64217.1| Anaphase-promoting complex subunit [Medicago truncatula]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/514 (81%), Positives = 471/514 (91%), Gaps = 1/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPK+QI  L++ GLY+SAQ+LGCFLVSS A N E+SPHLK E+L++LGDS +R+REYR
Sbjct: 1   MEVPKDQIATLLENGLYNSAQILGCFLVSSPAANAESSPHLKIESLVLLGDSFYREREYR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQALQYYK++PKQ+ +S+RSSLS++  SS  NS N S INENEVK+KIASCH  
Sbjct: 61  RAIHTYKQALQYYKMIPKQSMSSARSSLSSNRSSSP-NSCNTSVINENEVKFKIASCHCF 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L E KAA+VEMEGIPSKARNL M+LL+ KLYR SRH+R AVA YKECLRHCPF +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGKLYRISRHSRAAVAIYKECLRHCPFILEAITA 179

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           L+E+G+T KDIISLF QTPNRS RAPFD  DSSRWL RYVEAQCCI+SNDYKGGLELFA+
Sbjct: 180 LSEMGSTAKDIISLFPQTPNRSVRAPFDPTDSSRWLQRYVEAQCCISSNDYKGGLELFAD 239

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNN H++LE+AKV+AIIGKN+EAI NFEK RSIDPYI+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNTHLILEIAKVEAIIGKNEEAITNFEKARSIDPYIITYMDEYAMLLKLKSDYS 299

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ ALSYAE+SIRIDERHIPGYI+KGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKRALSYAEQSIRIDERHIPGYIVKGNLL 359

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L+MKRPEAAV AFRGAQELRPD+R+YQGLVH+YL   K+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRPEAAVSAFRGAQELRPDIRTYQGLVHTYLALFKIKEALYASREAMKAMPQSAKAL 419

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           DWADDSLHVKLAQVFAATNML EALSHY+AALRL
Sbjct: 480 DWADDSLHVKLAQVFAATNMLSEALSHYQAALRL 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324760|ref|NP_001031513.1| anaphase-promoting complex subunit 7 [Arabidopsis thaliana] gi|330254540|gb|AEC09634.1| anaphase-promoting complex subunit 7 [Arabidopsis thaliana]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/514 (75%), Positives = 441/514 (85%), Gaps = 3/514 (0%)

Query: 1   MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
           MEVPKEQI  LI+ GLYDSA+MLGCFLVSS  ++ ETSP LKAENLI+LGD+LF  RE+R
Sbjct: 1   MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60

Query: 61  RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
           RAIHTYKQAL +Y  +PKQ+S  SRSS  + +  SS N+ ++SAINENEV++KIAS HFA
Sbjct: 61  RAIHTYKQALHHYTRIPKQSSGISRSS-LSLSTRSSVNASSISAINENEVRFKIASSHFA 119

Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
           L ETKAAI EME +  K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+  
Sbjct: 120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177

Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
           LAELG + KDIIS F QT NRS +   D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct: 178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237

Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
           LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct: 238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297

Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
           +L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct: 298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357

Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
           L  KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct: 358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417

Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           KLVGDVHA  +SGREKAKKFYES LRLEPGYLGA LALAELH++EGRNGDAVSLLERYLK
Sbjct: 418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477

Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           D+ADDSLHVKLAQVFAATNMLQ++LSH++AALR 
Sbjct: 478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRF 511

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2065011	558	APC7 "anaphase-promoting compl	0.994	0.915	0.717	5.5e-196
UNIPROTKB|Q9UJX3	599	ANAPC7 "Anaphase-promoting com	0.943	0.809	0.292	1.7e-50
RGD|1311927	565	Anapc7 "anaphase promoting com	0.943	0.858	0.290	9.5e-50
MGI|MGI:1929711	565	Anapc7 "anaphase promoting com	0.943	0.858	0.290	1.2e-49
DICTYBASE|DDB_G0292470	580	anapc7 "anaphase promoting com	0.968	0.858	0.264	9.8e-48
FB|FBgn0029879	615	APC7 "Anaphase Promoting Compl	0.770	0.643	0.258	1e-22
FB|FBgn0032863	678	Cdc23 "Cell division cycle 23	0.560	0.424	0.244	1.6e-13
ZFIN|ZDB-GENE-040426-866	579	cdc23 "CDC23 (cell division cy	0.554	0.492	0.240	2e-13
POMBASE|SPAC6F12.14	565	cut23 "anaphase-promoting comp	0.560	0.509	0.245	3.1e-13
UNIPROTKB|F1RH91	594	CDC23 "Uncharacterized protein	0.398	0.345	0.284	7.4e-13

TAIR|locus:2065011 APC7 "anaphase-promoting complex 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1898 (673.2 bits), Expect = 5.5e-196, P = 5.5e-196
 Identities = 369/514 (71%), Positives = 418/514 (81%)

Query:     1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
             MEVPKEQI  LI+ GLYDSA+MLGCFLVSS  ++ ETSP LKAENLI+LGD+LF  RE+R
Sbjct:     1 MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60

Query:    61 RAIHTYKQALQYYKIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFA 120
             RAIHTYKQAL +Y  +PKQ                        AINENEV++KIAS HFA
Sbjct:    61 RAIHTYKQALHHYTRIPKQSSGISRSSLSLSTRSSVNASSIS-AINENEVRFKIASSHFA 119

Query:   121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
             L ETKAAI EME +  K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+  
Sbjct:   120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177

Query:   181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
             LAELG + KDIIS F QT NRS +   D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct:   178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237

Query:   241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
             LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct:   238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297

Query:   301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
             +L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct:   298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357

Query:   361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
             L  KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct:   358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417

Query:   421 KLVGDVHASNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLK 480
             KLVGDVHA  +SGREKAKKFYES LRLEPGY          H++EGRNGDAVSLLERYLK
Sbjct:   418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477

Query:   481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
             D+ADDSLHVKLAQVFAATNMLQ++LSH++AALR+
Sbjct:   478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRI 511

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|Q9UJX3 ANAPC7 "Anaphase-promoting complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 148/506 (29%), Positives = 237/506 (46%)

Query:    15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
             GL+ + ++L   L++ S  N E  SP  K + L+   DSLF D+EYR A+  Y  ALQ  
Sbjct:    48 GLHSNVRLLSSLLLTMSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 107

Query:    74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
             K + K                           +E EVKYK+A C+  L + K AI  ++G
Sbjct:   108 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKQDKDAIAILDG 161

Query:   134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
             IPS+ R  ++++++A LY+ +   R +V  YKE LR CP  ++AI  L  L     ++ S
Sbjct:   162 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 221

Query:   194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
             +   T N     P  +LD   WL  +++A   + + D    +     L ++    +N+ +
Sbjct:   222 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDL 273

Query:   252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
             L  +A +    G N  ++L FE+ + +DPY++  MD Y  LL  +     +  L   L +
Sbjct:   274 LGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFN 333

Query:   312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
             I     E +V       + ++  R AL    K+I+++   +   ++KG  L +M R + A
Sbjct:   334 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 392

Query:   370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
             +I FR A  L P  L  Y+GL+  YL  + ++EA+  A    K +  +A+ L L+  V  
Sbjct:   393 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 452

Query:   429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
              +   +EKAK   + AL   P Y             E +  D ++LL   L + +D  LH
Sbjct:   453 EDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512

Query:   489 VKLAQVFAATNMLQEALSHYEAALRL 514
               L     A N  QEA+  Y  AL L
Sbjct:   513 RILGDFLVAVNEYQEAMDQYSIALSL 538

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

RGD|1311927 Anapc7 "anaphase promoting complex subunit 7" [Rattus norvegicus (taxid:10116)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 147/506 (29%), Positives = 236/506 (46%)

Query:    15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
             GL+ + ++L   L++ S  N E  SP  K + L+   DSLF D+EYR A+  Y  ALQ  
Sbjct:    14 GLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 73

Query:    74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
             K + K                           +E EVKYK+A C+  L   K AI  ++G
Sbjct:    74 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKLDKDAIAILDG 127

Query:   134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
             IPS+ R  ++++++A LY+ +   R +V  YKE LR CP  ++AI  L  L     ++ S
Sbjct:   128 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 187

Query:   194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
             +   T N     P  +LD   WL  +++A   + + D    +     L ++    +N+ +
Sbjct:   188 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDL 239

Query:   252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
             L  +A +    G N  ++L FE+ + +DPY++  MD Y  LL  +     +  L   L +
Sbjct:   240 LGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFN 299

Query:   312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
             I     E +V       + ++  R AL    K+I+++   +   ++KG  L +M R + A
Sbjct:   300 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 358

Query:   370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
             +I FR A  L P  L  Y+GL+  YL  + ++EA+  A    K +  +A+ L L+  V  
Sbjct:   359 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 418

Query:   429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
              +   +EKAK   + AL   P Y             E +  D ++LL   L + +D  LH
Sbjct:   419 EDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 478

Query:   489 VKLAQVFAATNMLQEALSHYEAALRL 514
               L     + N  QEA+  Y  AL L
Sbjct:   479 RILGDFLVSVNEYQEAMDQYSIALSL 504

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

MGI|MGI:1929711 Anapc7 "anaphase promoting complex subunit 7" [Mus musculus (taxid:10090)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 147/506 (29%), Positives = 236/506 (46%)

Query:    15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
             GL+ + ++L   L++ S  N E  SP  K + L+   DSLF D+EYR A+  Y  ALQ  
Sbjct:    14 GLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYAMALQQK 73

Query:    74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
             K + K                           +E EVKYK+A C+  L   K AI  ++G
Sbjct:    74 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKLDKDAIAVLDG 127

Query:   134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
             IPS+ R  ++++++A LY+ +   R +V  YKE LR CP  ++AI  L  L     ++ S
Sbjct:   128 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 187

Query:   194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
             +   T N     P  +LD   WL  +++A   + + D    +     L ++    +N+ +
Sbjct:   188 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDL 239

Query:   252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
             L  +A +    G +  ++L FE+ + +DPY++  MD Y  LL  +     +  L   L +
Sbjct:   240 LGSLADLYFRAGDSKNSVLKFEQAQMLDPYLIRGMDVYGYLLAREGRLEDVENLGCRLFN 299

Query:   312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
             I     E +V       + ++  R AL    K+I+++   +   ++KG  L +M R + A
Sbjct:   300 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 358

Query:   370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
             +I FR A  L P  L  Y+GL+  YL  + ++EA+  A    K +  +A+ L L+  V  
Sbjct:   359 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 418

Query:   429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
              +   +EKAK   + AL   P Y             E +  D ++LL   L + +D  LH
Sbjct:   419 EDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 478

Query:   489 VKLAQVFAATNMLQEALSHYEAALRL 514
               L     A N  QEA+  Y  AL L
Sbjct:   479 RILGDFLVAVNEYQEAMDQYSIALSL 504

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

DICTYBASE|DDB_G0292470 anapc7 "anaphase promoting complex subunit 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 139/526 (26%), Positives = 261/526 (49%)

Query:     1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
             +E+    +  L++   + SA+ LG F++S    N + +PH    +  + GDSLF   E+ 
Sbjct:    10 VELMISNLRILVESKQFSSAEFLGNFVISVP--NQQKTPHQNIISFSLFGDSLFGKNEFV 67

Query:    61 RAIHTYKQALQY-YKIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHF 119
             R++  +KQ+L   +K+                               E E+KYKI+ C+ 
Sbjct:    68 RSLKYFKQSLDILFKVYNNPNNNNNNNNKQADFDNKQF---------EYELKYKISLCYI 118

Query:   120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN--SRHNRGAVACYKECLRHCPFFIEA 177
              +     AI  +E IP  +R L   L +A+LY++     ++  +  YKE ++ CP  +EA
Sbjct:   119 KINRNNLAISYLESIPFSSRGLDTHLTIARLYKDIGKEKSKECIISYKEVIKLCPLCLEA 178

Query:   178 ITALAELGATPKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKG 233
             I +L E+G     +    I+ F Q  N S  +  + +D S W+     +Q  +  N  + 
Sbjct:   179 INSLKEMGENVDQVLIPSINKFQQK-NNSFNSN-NIIDLS-WISLLSMSQYEMKRNQPEK 235

Query:   234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN----FEKVRSIDPYIMTYMDEY 289
              L L  ++  +F  N+++L ++A   + +  ++ +I+N    F+K+R +DPY +  MD +
Sbjct:   236 SLILLKKVESKFSTNLYVLEKLAL--SYLYHDEPSIINTFNIFQKIRLLDPYYIGSMDIF 293

Query:   290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDER 348
               LLK +    +L+K+ +DL++ +P   E + ++++ +  K+    +L   +++I I E 
Sbjct:   294 CSLLKRRSLQFELNKVCNDLVASNPYCAETWTSVALFYFLKENVEKSLENVDRAISIKES 353

Query:   349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408
             H   + +KG +LLS+  P  A+ +   A +L  ++ + + LV  +L  +++KEAL  A  
Sbjct:   354 HEFAHSLKGEILLSLDEPREALPSLERAFQLSKNILTARELVRCHLILNQMKEALVVAET 413

Query:   409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRN 468
                  P  +K + L+G V A+    RE+A+K    AL L P            +V+EGR 
Sbjct:   414 INNLSPDYSKTMALLGMVLANQPEEREEARKILTKALTLSPHCTDTVLTLSKLNVVEGRF 473

Query:   469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
              +A+ +L   L+    D +H ++A V+   +  ++A+ HY +AL +
Sbjct:   474 QEAIDILNSQLEYQETDLMHTEIAGVYLTKDYHEDAMIHYNSALEI 519

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

FB|FBgn0029879 APC7 "Anaphase Promoting Complex subunit 7" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 109/421 (25%), Positives = 188/421 (44%)

Query:   109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKL-YRNSRHNRG----AVAC 163
             E + + A C+  +G T  AI  +  +P   R+ +++L++A+L +  SRH       AV  
Sbjct:   110 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHGTTKKSEAVLA 169

Query:   164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223
             YKE +R CP  ++ I AL ELG    +I SL       +   P DH D   WL ++++A 
Sbjct:   170 YKEVIRECPMALQVIEALLELGVNGNEINSLVMH----AATVP-DHFD---WLSKWIKAL 221

Query:   224 CCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
               + +  +    + F  L        N H+++ + K     G   +A   F      +P 
Sbjct:   222 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 281

Query:   282 IMTYMDEYAMLLKVK--C--DYSKLSKLVHDLLS-IDPSRPEVFVALSVLW-ERKDERGA 335
              +  +   A+L   +  C  D + +  L   + S +  +    F    +L+ E K ERG 
Sbjct:   282 NVEAIGLMAVLCGQEGGCEQDSADMDYLFAKVSSEVKYTASHWFAHAQLLYDEGKFERG- 340

Query:   336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYL 394
             L++ EK +  + R+    I++G LL++++R   AV AFR AQ + P     Y+GL HSYL
Sbjct:   341 LNFVEKCLDSEPRNHEALILRGRLLIALERHTQAVCAFRTAQMVAPYRFEIYRGLFHSYL 400

Query:   395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA--SNASGREKAKKFYESALRLEPGYX 452
                + KEA       ++    S ++  + G       +   R  A+KF E +L++   Y 
Sbjct:   401 AQKRFKEANALCNWTIRLFQNSPRSFTMFGRTLFLFPDPRMRRTARKFAEKSLKINHIYT 460

Query:   453 XXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
                        +EG     + LLE+++  +   +L   L  +        +A+ +Y  AL
Sbjct:   461 PAVNLIADICQVEGPTKAIIKLLEKHVIIFPKVNLLNHLGDIMRKQKEPVKAMEYYYKAL 520

Query:   513 R 513
             R
Sbjct:   521 R 521

GO:0007067 "mitosis" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IGI

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IGI

GO:0005680 "anaphase-promoting complex" evidence=IPI

FB|FBgn0032863 Cdc23 "Cell division cycle 23 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 73/298 (24%), Positives = 138/298 (46%)

Query:   217 HRYVEAQCCIASNDYKGGLELFAEL-LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
             H Y+E    +  ND   GL+++ +L    F  +I+++ +MA V       D+AI  ++ +
Sbjct:   223 HTYLE----LYLND--DGLKIYEDLQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQAL 276

Query:   276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERG 334
                DPY +  +D Y+ LL VK   +++++L H  +SI+  RPE    +   +  R D + 
Sbjct:   277 LESDPYRLDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQV 336

Query:   335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSY 393
             A+SY +++++++ +++  + + G+  + +K   AA+ ++R A E+ + D R++ GL  +Y
Sbjct:   337 AISYFQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAY 396

Query:   394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYXX 453
                     +LY  + A +  P  ++ L  +G+ +       E A K Y  A+ +      
Sbjct:   397 EIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETY-EKLDKCENAVKCYWKAIDVGDIEGI 455

Query:   454 XXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511
                     H   G +  AV     Y +D    +    L Q F       E    YE A
Sbjct:   456 AMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITLANYYEKKGEYERA 513

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS;IPI

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0007113 "endomitotic cell cycle" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-866 cdc23 "CDC23 (cell division cycle 23, yeast, homolog)" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 70/291 (24%), Positives = 133/291 (45%)

Query:   215 WLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFE 273
             W+  +  A         K  L+ +  L++  F  + +I+ ++A     I   D+A+  F 
Sbjct:   211 WVRDFFMAHMYTELQMIKEALQKYQSLMEAGFAKSSYIISQIAVAYHNIRDIDQALYLFN 270

Query:   274 KVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD-- 331
             ++R  DP+ +  MD ++ LL V+    +LS L H+L+ ID  R E    +   +  +   
Sbjct:   271 ELREQDPFRIENMDTFSNLLYVRSMKPELSYLAHNLVEIDKYRVETCCVIGNYYSLRSQH 330

Query:   332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLV 390
             E+ AL Y +++++++ R +  + + G+  + MK   AA+ A+R A E+ + D R++ GL 
Sbjct:   331 EKAAL-YFQRALKLNPRCLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLG 389

Query:   391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
              +Y        +LY  R+A +  P  ++ L  +G+ +    S + +AKK Y  A  +   
Sbjct:   390 QTYEILKMPFYSLYYYRKAHQLRPNDSRMLVALGECY-EKLSQQLEAKKCYWRAYSVGDV 448

Query:   451 YXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNML 501
                        H     + DA      Y++D       ++ A+V  A   L
Sbjct:   449 ERMALLKLAKLHEQLNESDDAAQCYIIYIQDIFSCGEQLEHAEVSTALRYL 499

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

POMBASE|SPAC6F12.14 cut23 "anaphase-promoting complex subunit Apc8" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 204 (76.9 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 74/302 (24%), Positives = 142/302 (47%)

Query:   146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205
             L   +YR  + +  A+   K C+   PFF  A   L+    + + + ++ +Q P+     
Sbjct:   178 LSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMT 237

Query:   206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265
                ++ +S  LH+       + S+ Y+   E  AE++  FPN+ ++  + A +       
Sbjct:   238 KIFYVYASHELHQ-------VNSSAYEKLAE--AEII--FPNSRYLKTQRALLTYDSRDF 286

Query:   266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
             DEA   FE + + DPY +  MD Y+ +L V  + SKL  L     SID  RPE    +  
Sbjct:   287 DEAESLFENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGN 346

Query:   326 LWERKDERG-ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDL 383
              +    E   A++Y +++++++  ++  + + G+  + +K   AA+ ++R A ++ R D 
Sbjct:   347 YYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDY 406

Query:   384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443
             R++ GL  +Y        ALY  + A    P   +  + +G+ +       ++A K Y+ 
Sbjct:   407 RAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCY-EKIDRPQEAIKSYKR 465

Query:   444 AL 445
             AL
Sbjct:   466 AL 467

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IC

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IC

GO:0044732 "mitotic spindle pole body" evidence=IDA

UNIPROTKB|F1RH91 CDC23 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 201 (75.8 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 62/218 (28%), Positives = 111/218 (50%)

Query:   235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
             L+L  E LQ++ N I        +I+ ++A     I   D+A+  F ++R  DPY +  M
Sbjct:   238 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 297

Query:   287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD--ERGALSYAEKSIR 344
             D ++ LL V+   S+LS L H+L  ID  R E    +   +  +   E+ AL Y +++++
Sbjct:   298 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAAL-YFQRALK 356

Query:   345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEAL 403
             ++ R++  + + G+  + MK   AA+ A+R A E+ + D R++ GL  +Y         L
Sbjct:   357 LNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCL 416

Query:   404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441
             Y  R A +  P  ++ L  +G+ +    +   +AKK Y
Sbjct:   417 YYYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCY 453

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WVM3	APC7_MOUSE	No assigned EC number	0.3132	0.8988	0.8176	yes	no
Q8VY89	APC7_ARATH	No assigned EC number	0.7529	0.9941	0.9157	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019804001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (560 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024912001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (192 aa)					•	•	•		0.781
	GSVIVG00027833001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (545 aa)					•	•	•		0.771
	GSVIVG00016677001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (761 aa)					•	•	•	•	0.761
	GSVIVG00036925001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (873 aa)					•	•	•		0.690
	GSVIVG00029314001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (1796 aa)					•	•	•		0.667
	GSVIVG00018868001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (692 aa)					•	•			0.562
	GSVIVG00003617001	SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (577 aa)					•	•	•	•	0.498
	GSVIVG00019315001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (577 aa)					•	•	•	•	0.490
	GSVIVG00025520001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (266 aa)					•				0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-16
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-04
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	3e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	8e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002
TIGR00205	108	TIGR00205, fliE, flagellar hook-basal body complex	0.002
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	0.004

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 83.6 bits (207), Expect = 7e-17
 Identities = 105/485 (21%), Positives = 178/485 (36%), Gaps = 60/485 (12%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
           AE L + G +     +   A  +Y+QAL          S  ++  L+             
Sbjct: 125 AELLALRGLAYLGLGQLELAQKSYEQALAI-----DPRSLYAKLGLA------------Q 167

Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGI---PSKARNLQMSLLMAKLYRNSRHNRG 159
            A+ EN              E +A I E+         A  L+  LL++       +   
Sbjct: 168 LALAENRFD-----------EARALIDEVLTADPGNVDALLLKGDLLLS-----LGNIEL 211

Query: 160 AVACYKECLRHCPFFIEAITALA-------ELGATPKDIISLFAQTPNRSGRAPFDHLDS 212
           A+A Y++ +   P  I  + ALA       E     K   +L  + PN            
Sbjct: 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH------- 264

Query: 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272
                 Y++A       +Y+   E   + L+  P  +  LL     +  +G  ++A    
Sbjct: 265 ------YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318

Query: 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF-VALSVLWERKD 331
            ++    P         A +        +    +   L +DP  P    +         D
Sbjct: 319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378

Query: 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390
              A  Y  K+  +D  +       G   LS   P  A+     A +L P+L R+   L+
Sbjct: 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438

Query: 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
            SYL+  +  +AL AA++  K  P +A    L+G ++        KA++ +E AL +EP 
Sbjct: 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY-LGKGDLAKAREAFEKALSIEPD 497

Query: 451 YLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYE 509
           +  AA  LA + + EG   DA+   E+ L  D  +    + LA ++  T   +EA++  E
Sbjct: 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

Query: 510 AALRL 514
            A  L
Sbjct: 558 KAAEL 562

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 4/292 (1%)

Query: 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285
           + S  +   L    +L ++ P+N  +   +  +    G   +A   FEK  SI+P     
Sbjct: 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501

Query: 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-DERGALSYAEKSIR 344
               A +   + +     +    +L+IDP      +AL+ L+ R  +E  A+++ EK+  
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561

Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEAL 403
           ++ + I   +      L   + + A+     A +  PD   ++  L  + L    + +A+
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621

Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
            + ++ +   P SA AL L+ D +A       KA    + AL L+P    A + LA+L +
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAV-MKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680

Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
              R   A  + +   K     +L       ++        A+  Y  AL+ 
Sbjct: 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 8/211 (3%)

Query: 308 DLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
            LL++ P      + L+      K+   A++  ++++ +   +    I    LLL+ KR 
Sbjct: 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685

Query: 367 EAAVIAFRGAQELRPDLRSYQGLV-HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
           E+A    +  Q+  P       L    YL+      A+ A R+A+K  P S  A+KL   
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL--- 742

Query: 426 VHASNASGRE-KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484
             A  ASG   +A K  E+ L+  P       ALAEL++ +     A+   +  +K   D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802

Query: 485 DSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
           +++    LA +         AL + E AL+L
Sbjct: 803 NAVVLNNLAWL-YLELKDPRALEYAERALKL 832

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 61/284 (21%), Positives = 106/284 (37%), Gaps = 16/284 (5%)

Query: 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS 277
           R++  +  +A  DY    +   + L        +L  +A+   + GK  + +        
Sbjct: 59  RFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTL 118

Query: 278 IDPYIMTYMDEYAMLLKV-------KCDYSKLSKLVHDLLSIDPSRPEVFVALSVL-WER 329
           +D       +  A LL +               K     L+IDP      + L+ L    
Sbjct: 119 LDD------EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE 172

Query: 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQG 388
                A +  ++ +  D  ++   ++KG+LLLS+   E A+ A+R A  LRP ++     
Sbjct: 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448
           L    ++  + +EA   A   +K  P S  A  L   V     +  E A++  + AL+  
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN-YEDARETLQDALKSA 291

Query: 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492
           P YL A L         G    A   L + LK   +     +L 
Sbjct: 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 299 YSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYI 354
           + K++ L+   L++    D S  E+  A     ++   + A+   + +++ D        
Sbjct: 1   FIKITALLCIALALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARF 60

Query: 355 MKGNLLLSMKRPEAAVIAFRGAQELR-PDLRSYQGLVHSYLQFSKVKEAL-YAAREAMKA 412
           + G + L++    AA    R A  L  P  +    L  +YL   K ++ L     + +  
Sbjct: 61  LLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLD 120

Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471
              +A+ L L G  +     G+ E A+K YE AL ++P  L A L LA+L + E R  +A
Sbjct: 121 DEGAAELLALRGLAYL--GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA 178

Query: 472 VSLLERYLKDWAD--DSLHVKLAQVFAATNMLQEALSHYEAALRL 514
            +L++  L       D+L +K   +  +   ++ AL+ Y  A+ L
Sbjct: 179 RALIDEVLTADPGNVDALLLK-GDLLLSLGNIELALAAYRKAIAL 222

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 20/265 (7%)

Query: 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNR 201
           LL+A  Y   ++   A+   K  L   P   EA   LA+L    K       +      +
Sbjct: 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698

Query: 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI 261
             +A              +E    +   DY   ++ + + L+R P++    +++ +    
Sbjct: 699 HPKAALGFE---------LEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA 748

Query: 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321
            G   EA+   E      P         A L   + DY K  K    ++   P    V  
Sbjct: 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808

Query: 322 ALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMK--GNLLLSMKRPEAAVIAFRGAQE 378
            L+ +  E KD R AL YAE+++++   +IP  I+   G LL+     + A+   R A  
Sbjct: 809 NLAWLYLELKDPR-ALEYAERALKL-APNIPA-ILDTLGWLLVEKGEADRALPLLRKAVN 865

Query: 379 LRPDLRSYQ-GLVHSYLQFSKVKEA 402
           + P+  + +  L  + L   +  EA
Sbjct: 866 IAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMK 411
            +  GNL   +   + A+  +  A EL PD   +Y  L  +Y +  K +EAL    +A++
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
             P +AKA   +G  +     G+ E+A + YE AL L+P
Sbjct: 63  LDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 10/158 (6%)

Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD----L 383
           ++ D   A    EK++  D  +   ++++ +    +   + A  ++R A  L P+    L
Sbjct: 47  QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFY 441
            +Y   + +  +     EA+     A+   A  + +  L+ +G + A  A   ++A+++ 
Sbjct: 107 NNYGAFLCAQGRPE---EAMQQFERALADPAYGEPSDTLENLG-LCALKAGQFDQAEEYL 162

Query: 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479
           + AL L+P +  A L LA LH   G    A   LERY 
Sbjct: 163 KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200

Length = 250

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLG-A 454
             +  A    ++A+ A PQ  +A  L+GD+    A G    A +  E     +P YL   
Sbjct: 194 GDLDAARALLKKALAADPQCVRASILLGDLAL--AQGDYAAAIEALERVEEQDPEYLSEV 251

Query: 455 ALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513
              L E +   G   + +  L R L+++    L + LAQ+       + A +     LR
Sbjct: 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR 310

Length = 389

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 22/198 (11%)

Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQ 387
           E+ D   A    +K++  D      Y+        +   E A  +FR A  L P+     
Sbjct: 43  EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----N 98

Query: 388 GLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS-----------NASGRE 435
           G V + Y  F      L    +  +AM Q  +A++       +            A   +
Sbjct: 99  GDVLNNYGTF------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152

Query: 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495
           KA+K+   AL+++P    + L LAEL+ + G+  DA + LERY + +   +  + L    
Sbjct: 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212

Query: 496 AATNMLQEALSHYEAALR 513
           A       A   Y A L+
Sbjct: 213 ARALGDVAAAQRYGAQLQ 230

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKL 491
           ++A ++YE AL L+P    A   LA  +   G+  +A+   E+ L+   D A    +  L
Sbjct: 17  DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK--AYYNL 74

Query: 492 AQVFAATNMLQEALSHYEAALRL 514
              +      +EAL  YE AL L
Sbjct: 75  GLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESA 444
              L + Y +     EAL    +A++  P +A A   +   +     G+ E+A + YE A
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKA 60

Query: 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           L L+P    A   L   +   G+  +A+   E+ L+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 366 PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
            +AA +  + ++      +   G         +  EAL   +  + A P +   L+L GD
Sbjct: 291 QQAADLLAKRSKRGGLAAQ--YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD 348

Query: 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485
           +    A+  ++A +  + AL L+P      L LA+  +  G+  +A+ +L RYL +  +D
Sbjct: 349 ILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407

Query: 486 SL-HVKLAQVFAATNMLQEALSHYEAALRL 514
                 LAQ +A      EAL        L
Sbjct: 408 PNGWDLLAQAYAELGNRAEALLARAEGYAL 437

Length = 484

>gnl|CDD|232873 TIGR00205, fliE, flagellar hook-basal body complex protein FliE

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 62  AIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF------NVSAINENEVKYKIA 115
            +     A+  +  +  QN  ++ +  S+ +++   +SF      +++ +N+ ++     
Sbjct: 1   MVRNDAFAISPFINLNTQNPHTAVNLFSSKSKAQDNDSFSDLLKNSITDLNKTQLASDKV 60

Query: 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169
           +   ALG +   + ++     KA    MS+ + K  RN      AV  Y+E +R
Sbjct: 61  TEQAALGPSSVDLHDVMIAMQKA---SMSMSILKEVRNK-----AVKAYQEIMR 106

fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction [Cellular processes, Chemotaxis and motility]. Length = 108

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448
           L    L  S V  A    ++A++A  +  +A  ++G V  +     +KA +  E  L   
Sbjct: 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQN 244

Query: 449 PGYLGAAL-ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494
           P YL   L  L E +   G+  + ++ L R ++        + LA +
Sbjct: 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL 291

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	100.0
KOG1126	638	consensus DNA-binding cell division cycle control	100.0
PRK14574	822	hmsH outer membrane protein; Provisional	99.97
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG1126	638	consensus DNA-binding cell division cycle control	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG2003	840	consensus TPR repeat-containing protein [General f	99.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.96
KOG2076	895	consensus RNA polymerase III transcription factor	99.96
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.96
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
PLN03218	1060	maturation of RBCL 1; Provisional	99.95
PLN03077	857	Protein ECB2; Provisional	99.95
PRK14574	822	hmsH outer membrane protein; Provisional	99.95
PLN03077	857	Protein ECB2; Provisional	99.95
KOG2076	895	consensus RNA polymerase III transcription factor	99.95
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.95
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.94
PLN03218	1060	maturation of RBCL 1; Provisional	99.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.92
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.92
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.92
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.92
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.91
PRK12370	553	invasion protein regulator; Provisional	99.91
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.91
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.91
PRK12370	553	invasion protein regulator; Provisional	99.91
KOG1129	478	consensus TPR repeat-containing protein [General f	99.9
KOG1129	478	consensus TPR repeat-containing protein [General f	99.9
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.89
KOG1125	579	consensus TPR repeat-containing protein [General f	99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.89
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.88
KOG1125	579	consensus TPR repeat-containing protein [General f	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.88
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.88
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.87
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.85
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.85
PLN02789	320	farnesyltranstransferase	99.85
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
PLN02789	320	farnesyltranstransferase	99.82
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.81
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.79
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.78
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.73
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.71
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
PRK04841	903	transcriptional regulator MalT; Provisional	99.67
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.67
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.66
PRK04841	903	transcriptional regulator MalT; Provisional	99.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.62
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.6
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.58
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.56
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.54
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
KOG0553	304	consensus TPR repeat-containing protein [General f	99.51
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.48
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.46
KOG0553	304	consensus TPR repeat-containing protein [General f	99.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.36
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.34
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.31
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.31
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.29
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.29
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.24
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.2
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.19
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.19
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.19
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.18
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.16
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.14
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.13
PRK15331	165	chaperone protein SicA; Provisional	99.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.1
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.1
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.07
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.07
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.07
PRK15331	165	chaperone protein SicA; Provisional	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.05
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.05
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.04
PRK11906	458	transcriptional regulator; Provisional	99.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.02
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.02
PRK11906	458	transcriptional regulator; Provisional	99.02
PRK10803	263	tol-pal system protein YbgF; Provisional	99.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.0
PRK10803	263	tol-pal system protein YbgF; Provisional	98.99
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.99
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.98
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.95
PF12688	120	TPR_5: Tetratrico peptide repeat	98.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.91
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.9
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.9
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.89
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.88
PF13512	142	TPR_18: Tetratricopeptide repeat	98.86
KOG4234	271	consensus TPR repeat-containing protein [General f	98.85
PF12688	120	TPR_5: Tetratrico peptide repeat	98.85
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.81
PF13512	142	TPR_18: Tetratricopeptide repeat	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
KOG4234	271	consensus TPR repeat-containing protein [General f	98.76
KOG2471	696	consensus TPR repeat-containing protein [General f	98.75
PF13371	73	TPR_9: Tetratricopeptide repeat	98.74
KOG2471	696	consensus TPR repeat-containing protein [General f	98.71
KOG4555	175	consensus TPR repeat-containing protein [Function	98.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.67
KOG1586	288	consensus Protein required for fusion of vesicles	98.6
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.58
KOG4555	175	consensus TPR repeat-containing protein [Function	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.53
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.52
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.51
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.51
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.51
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.48
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.47
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.46
KOG1258	577	consensus mRNA processing protein [RNA processing	98.46
KOG1586	288	consensus Protein required for fusion of vesicles	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.43
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.4
KOG1585	308	consensus Protein required for fusion of vesicles	98.38
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.37
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.37
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.32
KOG1585	308	consensus Protein required for fusion of vesicles	98.32
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.31
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.3
PF13428	44	TPR_14: Tetratricopeptide repeat	98.29
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.25
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.23
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.22
PF13428	44	TPR_14: Tetratricopeptide repeat	98.21
PF13431	34	TPR_17: Tetratricopeptide repeat	98.2
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.19
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.12
KOG1258	577	consensus mRNA processing protein [RNA processing	98.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.07
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.06
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.05
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	98.05
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.05
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.02
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.98
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.94
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.91
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.91
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.91
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.9
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.84
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.8
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.8
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.74
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.71
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.65
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.64
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.62
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.6
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.58
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.58
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.55
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.47
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.43
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.42
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.32
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.29
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.23
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.22
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.19
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.15
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.08
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.06
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.03
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.9
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.8
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.74
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.7
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.63
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.54
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.5
PRK10941	269	hypothetical protein; Provisional	96.49
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.47
PRK10941	269	hypothetical protein; Provisional	96.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.42
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.41
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.31
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.15
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.14
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.11
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.99
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.98
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	95.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.98
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.94
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.93
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.79
PRK11619	644	lytic murein transglycosylase; Provisional	95.76
PRK11619	644	lytic murein transglycosylase; Provisional	95.65
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.62
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.58
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.54
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.52
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.48
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.39
KOG3364	149	consensus Membrane protein involved in organellar	95.35
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.25
KOG3364	149	consensus Membrane protein involved in organellar	95.25
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	95.11
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.01
KOG1463	411	consensus 26S proteasome regulatory complex, subun	94.99
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.98
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.86
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.82
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.76
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.68
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.63
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.53
KOG1310	758	consensus WD40 repeat protein [General function pr	94.41
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.36
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.28
KOG1310	758	consensus WD40 repeat protein [General function pr	94.28
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.03
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.0
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.89
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.87
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.63
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	93.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.46
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.31
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.2
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.12
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.98
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.95
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.93
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.6
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.54
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.5
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.48
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.32
COG2912	269	Uncharacterized conserved protein [Function unknow	92.31
COG2912	269	Uncharacterized conserved protein [Function unknow	92.21
PF12854	34	PPR_1: PPR repeat	92.2
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.14
PF12854	34	PPR_1: PPR repeat	92.07
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.07
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	91.9
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.76
COG4941	415	Predicted RNA polymerase sigma factor containing a	91.17
PF13041	50	PPR_2: PPR repeat family	91.13
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	91.09
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.06
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	90.74
smart00299	140	CLH Clathrin heavy chain repeat homology.	90.74
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.68
PF13041	50	PPR_2: PPR repeat family	90.42
KOG1463	411	consensus 26S proteasome regulatory complex, subun	90.26
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	89.85
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.74
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.58
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.2
PRK12798	421	chemotaxis protein; Reviewed	88.74
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.44
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	88.21
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.13
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.12
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.66
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	87.31
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.91
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.85
COG3947	361	Response regulator containing CheY-like receiver a	86.84
smart00299	140	CLH Clathrin heavy chain repeat homology.	86.11
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.8
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.4
PF04049	142	APC8: Anaphase promoting complex subunit 8 / Cdc23	85.18
COG3947	361	Response regulator containing CheY-like receiver a	85.01
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.85
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.58
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.87
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	83.32
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.59
KOG2581	493	consensus 26S proteasome regulatory complex, subun	81.27
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	80.67
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	80.6
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	80.52

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-50  Score=356.20  Aligned_cols=460  Identities=16%  Similarity=0.128  Sum_probs=382.2

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHh
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~  120 (514)
                      .....++.-.++.|+|++|++....+-..+|.+......++.++.+..+.++...-.   ....+.-.+.+-.+|.++-.
T Consensus        49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE  128 (966)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence            347789999999999999999999999999999988888888877665555544322   22445567888899999999


Q ss_pred             cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                      .|++++|+..++. +...|+..++|..+|.++...|+.+.|..+|..+++++|+...+...++.+....|...++.....
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence            9999999999998 556699999999999999999999999999999999999999999888877766665544433333


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID  279 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  279 (514)
                      +.....      +.-.+.+-.+|.++...|+...|+..|+++++.+|..+++++++|.+|...+.+++|+.+|.+++...
T Consensus       209 kAi~~q------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr  282 (966)
T KOG4626|consen  209 KAIETQ------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR  282 (966)
T ss_pred             HHHhhC------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            333222      22223334558888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      |.+..++.++|.+|..+|..+-|+..|+++++..|+.++++.+++..+.. |+..+|..+|.+++...|.++++.+++|+
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888877 88888888888888888888888888888


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      ++.++|.+++|...|.++++..|+. .+..++|.+|.++|++++|+.+|++++.+.|..++++.++|.+|..+ |+...|
T Consensus       363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-g~v~~A  441 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-GDVSAA  441 (966)
T ss_pred             HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-hhHHHH
Confidence            8888888888888888888888887 77888888888888888888888888888888888888888888888 888888


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276          438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      +.+|.+++..+|...+++.+||.+|...|+..+|+..|+.++++.|+.+ ++.++..++.-..++.+=-+.+++
T Consensus       442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k  515 (966)
T KOG4626|consen  442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK  515 (966)
T ss_pred             HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence            8888888888888888888888888888888888888888888888864 888888777666555544444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-50  Score=355.98  Aligned_cols=437  Identities=15%  Similarity=0.143  Sum_probs=400.8

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCC----------------C----------ChhhhHHHHHHHHhhHhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE----------------T----------SPHLKAENLIILGDSLFRDR   57 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~----------------~----------~~~~~~~~~~~~g~~~~~~g   57 (514)
                      ..+.++.++..|+|.+|...++.+....+.+..                .          ..+.-++++..+|+++-..|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            567788999999999999988876433221100                0          11334688999999999999


Q ss_pred             hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc-c--cccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-
Q 010276           58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-N--VSAINENEVKYKIASCHFALGETKAAIVEMEG-  133 (514)
Q Consensus        58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-  133 (514)
                      ++.+|+..|+.+++++|+..+++..++.+++..|+.+.|.+.| .  ...|+...++..+|..+-..|+..+|...+.+ 
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            9999999999999999999999999999999999999999988 2  35566688889999999999999999988777 


Q ss_pred             CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch
Q 010276          134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (514)
                      +...|...-+|..+|.++..+|+...|+..|+++++++|...+++..|                                
T Consensus       211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL--------------------------------  258 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL--------------------------------  258 (966)
T ss_pred             HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH--------------------------------
Confidence            555688889999999999999999999999999999999999999877                                


Q ss_pred             hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL  293 (514)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  293 (514)
                              |.++-..+.+++|+.+|.+++...|++..++.++|.+|+.+|..+-|+..|+++++.+|..++++.++|..+
T Consensus       259 --------GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL  330 (966)
T KOG4626|consen  259 --------GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL  330 (966)
T ss_pred             --------HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276          294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      -..|+..+|..+|.+++...|+++++..++|.++.. |.+++|...|.++++..|+...++.++|.+|.++|++++|+.+
T Consensus       331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~  410 (966)
T KOG4626|consen  331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC  410 (966)
T ss_pred             HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      |++++++.|.. +++.++|..|-.+|+.+.|+..|.+++..+|..++++.++|.+|... |+..+|+..|+.++++.|+.
T Consensus       411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs-Gni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS-GNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc-CCcHHHHHHHHHHHccCCCC
Confidence            99999999999 99999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ++++.+++.++.-..++.+=-+.+++..++
T Consensus       490 pdA~cNllh~lq~vcdw~D~d~~~~kl~si  519 (966)
T KOG4626|consen  490 PDAYCNLLHCLQIVCDWTDYDKRMKKLVSI  519 (966)
T ss_pred             chhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence            999999999987776666555555555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.8e-43  Score=369.51  Aligned_cols=490  Identities=18%  Similarity=0.186  Sum_probs=283.1

Q ss_pred             HHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276            7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS   86 (514)
Q Consensus         7 ~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   86 (514)
                      .+..+...|+++.|......++...+        ..+..+..+|.++...|++++|+.+|+++++.+|+++..+..++.+
T Consensus       335 la~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  406 (899)
T TIGR02917       335 LASIQLRLGRVDEAIATLSPALGLDP--------DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS  406 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34555666777777666665544221        1233556666666666666666666666666666666666666666


Q ss_pred             hhhccccCCCCcccc-------------------------------------cccCChhHHHHHHHHHHHhcCCHHHHHH
Q 010276           87 SLSTSNRSSSPNSFN-------------------------------------VSAINENEVKYKIASCHFALGETKAAIV  129 (514)
Q Consensus        87 ~~~~~~~~~a~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~  129 (514)
                      +...|+.+.|...+.                                     ...|+++.++..+|.++...|++++|+.
T Consensus       407 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  486 (899)
T TIGR02917       407 KLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE  486 (899)
T ss_pred             HHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence            666665555544431                                     1223344555566666666666666666


Q ss_pred             HHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276          130 EMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD  208 (514)
Q Consensus       130 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (514)
                      .++++ ...|.++..++.+|.++...|++++|+..|++++..+|.+..++..++.++...++..++...........   
T Consensus       487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---  563 (899)
T TIGR02917       487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---  563 (899)
T ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            66653 22355555666666666666666666666666666666666666666555555555444433333322211   


Q ss_pred             cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                         +......+..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.+|.++..+..
T Consensus       564 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  640 (899)
T TIGR02917       564 ---PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL  640 (899)
T ss_pred             ---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence               22222334456666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      ++.++...|++++|...+++++...|++...+..++.++.. |++++|+..++.+....|.++..+..+|.++...|+++
T Consensus       641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  720 (899)
T TIGR02917       641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP  720 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence            66666666666666666666666666655555555554444 55555555555555555545555555555555555555


Q ss_pred             HHHHHHHHhHhhcCChH----------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276          368 AAVIAFRGAQELRPDLR----------------------------------SYQGLVHSYLQFSKVKEALYAAREAMKAM  413 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~~----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  413 (514)
                      +|+..|++++...|+..                                  ++..+|.++...|++++|+..|+++++..
T Consensus       721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            55555555554444443                                  44555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHH
Q 010276          414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA  492 (514)
Q Consensus       414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~  492 (514)
                      |+++.++..+|.++... |+ .+|+..+++++...|+++..+..+|.++...|++++|+.+++++++..|.+ .++..++
T Consensus       801 p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  878 (899)
T TIGR02917       801 PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA  878 (899)
T ss_pred             CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            55555555555555554 55 455555555555555555555556666666666666666666666666644 3666666


Q ss_pred             HHHHHhccHHHHHHHHHHHh
Q 010276          493 QVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~al  512 (514)
                      .++...|++++|++.+++++
T Consensus       879 ~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       879 LALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHh
Confidence            66666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.8e-43  Score=364.76  Aligned_cols=495  Identities=17%  Similarity=0.150  Sum_probs=356.6

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      ++..+..+...|+++.|..+.+.++...        +....++..+|.+++..|++++|+..|++++..+|+++..+..+
T Consensus       162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~  233 (899)
T TIGR02917       162 KLGLAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL  233 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3445556667777777777766665532        22345788888888889999999999999988888888888888


Q ss_pred             hhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhh
Q 010276           84 SRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRG  159 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~  159 (514)
                      +.++...|++++|...+.   ...|+++.+.+..|.++...|++++|+..++++ ...|.....+..+|.++...|++++
T Consensus       234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~  313 (899)
T TIGR02917       234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ  313 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Confidence            888888888888877662   244566777888888888889999999888885 3346777788888888999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276          160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA  239 (514)
Q Consensus       160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  239 (514)
                      |+..++++++..|.+..++..++.+....++...+...........      +.........|.++...|++++|...|+
T Consensus       314 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  387 (899)
T TIGR02917       314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD------PDDPAALSLLGEAYLALGDFEKAAEYLA  387 (899)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999888888888888878887777666555544322      2233445567888888999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHH
Q 010276          240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV  319 (514)
Q Consensus       240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  319 (514)
                      +++..+|+++..+..+|.++...|++++|+..++++++.+|........++..+...|++++|...++++....|+++..
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  467 (899)
T TIGR02917       388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL  467 (899)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence            99888888888888888888888888888888888888877766666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC
Q 010276          320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS  397 (514)
Q Consensus       320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  397 (514)
                      +..+|.++.. |++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++ .++..++.++...|
T Consensus       468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  547 (899)
T TIGR02917       468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG  547 (899)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence            6666666665 666677777777766666666666666666666666666666666666666665 55666666666666


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      ++++|...+++++..+|.+...+..++.++... |++++|+..++++++..|.++.++..+|.++...|++++|+..|++
T Consensus       548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  626 (899)
T TIGR02917       548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK  626 (899)
T ss_pred             CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666666666666666666666666666666665 6666666666666666666666666666666666666666666666


Q ss_pred             HHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          478 YLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       478 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +++..|++. .+..+|.++...|++++|...|+++++
T Consensus       627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            666655543 555666666666666666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.1e-41  Score=353.09  Aligned_cols=509  Identities=15%  Similarity=0.095  Sum_probs=415.2

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCC--------hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcc
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETS--------PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK   74 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p   74 (514)
                      .+...+..++..|+++.|...++.++...+.++...        ........+.+|+.+...|++++|+..|++++..+|
T Consensus        64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p  143 (1157)
T PRK11447         64 VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP  143 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence            455667778888999999988888877654433210        011122357789999999999999999999999988


Q ss_pred             cCchhhhh-hhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-----------
Q 010276           75 IVPKQNST-SSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR-----------  139 (514)
Q Consensus        75 ~~~~~~~~-~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----------  139 (514)
                      .++..... ...+....++.++|...+   ....|++..+++.+|.++...|++++|+..++++...+.           
T Consensus       144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~  223 (1157)
T PRK11447        144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG  223 (1157)
T ss_pred             CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence            77643222 222333457777777777   236688899999999999999999999999887532211           


Q ss_pred             ------------------------cHH--------------------HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH
Q 010276          140 ------------------------NLQ--------------------MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI  175 (514)
Q Consensus       140 ------------------------~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  175 (514)
                                              ...                    ....+|.++...|++++|+..|+++++.+|++.
T Consensus       224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~  303 (1157)
T PRK11447        224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS  303 (1157)
T ss_pred             HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                                    000                    001347888899999999999999999999999


Q ss_pred             HHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH---------HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 010276          176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW---------LHRYVEAQCCIASNDYKGGLELFAELLQRFP  246 (514)
Q Consensus       176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p  246 (514)
                      .++..++.++...++..++.....+.+...+.... ...|         ......|..+...|++++|+..|++++..+|
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P  382 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN  382 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999888877766666554443211 1112         2234558888999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH-----------------------------------
Q 010276          247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM-----------------------------------  291 (514)
Q Consensus       247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------  291 (514)
                      +++.++..+|.++...|++++|++.|+++++.+|.+..++..++.                                   
T Consensus       383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~  462 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND  462 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999998776655444                                   


Q ss_pred             -------HHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276          292 -------LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM  363 (514)
Q Consensus       292 -------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                             ++...|++++|+..++++++.+|+++.+++.++.++.. |++++|+..+++++...|.++..++.++..+...
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~  542 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS  542 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence                   34467999999999999999999999999999998888 9999999999999999999998888888777777


Q ss_pred             CChHHHHHHHHHhH----------------------------------------hhcCCh-HHHHHHHHHHHhcCCHHHH
Q 010276          364 KRPEAAVIAFRGAQ----------------------------------------ELRPDL-RSYQGLVHSYLQFSKVKEA  402 (514)
Q Consensus       364 ~~~~~A~~~~~~~~----------------------------------------~~~~~~-~~~~~l~~~~~~~~~~~~A  402 (514)
                      +++++|+..++++.                                        +..|.+ ..+..+|.++...|++++|
T Consensus       543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A  622 (1157)
T PRK11447        543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA  622 (1157)
T ss_pred             CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            87777777665431                                        124555 5678899999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      +..|+++++..|+++.++..++.++... |++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...
T Consensus       623 ~~~y~~al~~~P~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        623 RAAYQRVLTREPGNADARLGLIEVDIAQ-GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            9999999999999999999999999998 999999999999999999999999999999999999999999999999887


Q ss_pred             CCc-------hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          483 ADD-------SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       483 ~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      |++       .++..+|.++...|++++|+..|++++.
T Consensus       702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            643       2556679999999999999999999873

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=8.1e-41  Score=348.67  Aligned_cols=500  Identities=14%  Similarity=0.082  Sum_probs=341.1

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhh-
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS-   81 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-   81 (514)
                      .++++++.....++++-|......++.+.+        .+++++..++.++...|++++|.+.++++++..|+++.... 
T Consensus        30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p--------~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~  101 (1157)
T PRK11447         30 QLLEQVRLGEATHREDLVRQSLYRLELIDP--------NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSS  101 (1157)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHccCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            467778888888888888887777766432        23456788888888888888888888888888888876542 


Q ss_pred             ---------------hhhhhhhhccccCCCCccccc---ccCChhHH-HHHHHHHHHhcCCHHHHHHHHhcCCC-CCccH
Q 010276           82 ---------------TSSRSSLSTSNRSSSPNSFNV---SAINENEV-KYKIASCHFALGETKAAIVEMEGIPS-KARNL  141 (514)
Q Consensus        82 ---------------~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~  141 (514)
                                     .++..+...|+.++|...+..   ..|++... ......+....|++++|+..++++.. .|.++
T Consensus       102 ~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~  181 (1157)
T PRK11447        102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNT  181 (1157)
T ss_pred             HHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCH
Confidence                           223344555555555555521   11222211 11112222234566666666666432 25566


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH-hcc--CcccHhHHHhccCCcCCCCC------------
Q 010276          142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE-LGA--TPKDIISLFAQTPNRSGRAP------------  206 (514)
Q Consensus       142 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~--~~~~~~~~~~~~~~~~~~~~------------  206 (514)
                      .+++.+|.++...|++++|+..+++++...+....+...... +..  ........+...........            
T Consensus       182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~  261 (1157)
T PRK11447        182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ  261 (1157)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            666666666666666666666666665543332221111100 000  00000011110000000000            


Q ss_pred             -CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-
Q 010276          207 -FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-  284 (514)
Q Consensus       207 -~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-  284 (514)
                       ....++.  .....+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++.. 
T Consensus       262 ~~~~~dp~--~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~  339 (1157)
T PRK11447        262 QKQLADPA--FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR  339 (1157)
T ss_pred             HHhccCcc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence             0000010  111244788889999999999999999999999999999999999999999999999999999887642 


Q ss_pred             -------------HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc
Q 010276          285 -------------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI  350 (514)
Q Consensus       285 -------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~  350 (514)
                                   .....+.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..|+++++.+|.+.
T Consensus       340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                         123457778888999999999999999999988888888888887 889999999999998888877


Q ss_pred             hhHHHHH------------------------------------------HHHHhcCChHHHHHHHHHhHhhcCCh-HHHH
Q 010276          351 PGYIMKG------------------------------------------NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ  387 (514)
Q Consensus       351 ~~~~~~~------------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~  387 (514)
                      .++..++                                          .++...|++++|+..|+++++.+|++ .+++
T Consensus       420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~  499 (1157)
T PRK11447        420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY  499 (1157)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6654443                                          34456788889999999999988887 7788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH-----------------------------------------------
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL-----------------------------------------------  420 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------------------------------------------  420 (514)
                      .+|.++...|++++|+..+++++...|+++..+                                               
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~  579 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET  579 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence            888999999999999988888888777765543                                               


Q ss_pred             ---------------------------HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276          421 ---------------------------KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       421 ---------------------------~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (514)
                                                 ..+|.++... |++++|+..|+++++.+|+++.++..++.++...|++++|+.
T Consensus       580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~-g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~  658 (1157)
T PRK11447        580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR-GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA  658 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence                                       3455556666 777788888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          474 LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       474 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .++++++..|++. ++..+|.++...|++++|.+.|++++.
T Consensus       659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            8888777777664 677778888888888888888877764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.8e-39  Score=318.82  Aligned_cols=410  Identities=18%  Similarity=0.141  Sum_probs=301.7

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      +..+..+|..+++.|+|++|+..|++++...|+                                +..+..+|.|+..+|
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--------------------------------~~~~~n~a~~~~~l~  174 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------------------------------PVYYSNRAACHNALG  174 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------------------------hHHHHHHHHHHHHhC
Confidence            557889999999999999999999999999773                                235678889999999


Q ss_pred             CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc---ccHhHHHhcc
Q 010276          123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP---KDIISLFAQT  198 (514)
Q Consensus       123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~  198 (514)
                      ++++|+..++++ ...|.+..+++.+|.++...|++++|+..|..+...++.+......+.......   ......++..
T Consensus       175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~  254 (615)
T TIGR00990       175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK  254 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999985 445889999999999999999999999999887776665433222111110000   0000000000


Q ss_pred             CCc-----------------CC--CC-CCCcCCchhHHhHHHHHHHH---HHhcCHHHHHHHHHHHHHh---CCCcHHHH
Q 010276          199 PNR-----------------SG--RA-PFDHLDSSRWLHRYVEAQCC---IASNDYKGGLELFAELLQR---FPNNIHIL  252 (514)
Q Consensus       199 ~~~-----------------~~--~~-~~~~~~~~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~---~p~~~~~~  252 (514)
                      ...                 ..  .. .....++........++...   ...++|++|+..|++++..   .|....++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~  334 (615)
T TIGR00990       255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL  334 (615)
T ss_pred             CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            000                 00  00 00000111111111222221   2346788888888888865   36667788


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD  331 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  331 (514)
                      ..+|.++...|++++|+..|+++++.+|.+...+..+|.++...|++++|+..++++++.+|+++.++..+|.++.. |+
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  414 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE  414 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888887777 88


Q ss_pred             hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      +++|+..|++++.++|++...+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..|++++
T Consensus       415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888887 678888888888888888888888888


Q ss_pred             hhCCCCHHH------HHHHHHHH-HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          411 KAMPQSAKA------LKLVGDVH-ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       411 ~~~p~~~~~------~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      .+.|++...      +...+..+ ... |++++|+..+++++.++|++..++..+|.++...|++++|+.+|++++++.+
T Consensus       495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       495 ELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             hcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            887764322      22223333 334 8888888888888888888888888888888888888888888888888876


Q ss_pred             Cc
Q 010276          484 DD  485 (514)
Q Consensus       484 ~~  485 (514)
                      ..
T Consensus       574 ~~  575 (615)
T TIGR00990       574 TE  575 (615)
T ss_pred             cH
Confidence            54

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=3.6e-36  Score=295.51  Aligned_cols=424  Identities=14%  Similarity=0.073  Sum_probs=326.0

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      +.+....++..|+|+.|+...+..+...+         .+..+..+|.++...|+|++|+..++++++.+|+        
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--------  192 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP---------DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--------  192 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------
Confidence            45667788999999999999888776432         1347899999999999999999999999999884        


Q ss_pred             hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-Cc-cHHHHHHHHHHHHhcCChhhHH
Q 010276           84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-AR-NLQMSLLMAKLYRNSRHNRGAV  161 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~  161 (514)
                                             ...+++.+|.++..+|++++|+..+..+... +. +......+...+.     ..+.
T Consensus       193 -----------------------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~a~  244 (615)
T TIGR00990       193 -----------------------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-----KFAE  244 (615)
T ss_pred             -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-----HHHH
Confidence                                   4556677777777777777777766553211 11 1111111111111     2333


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhc------------------------------------cCcccHhHHHhccCCcCCCC
Q 010276          162 ACYKECLRHCPFFIEAITALAELG------------------------------------ATPKDIISLFAQTPNRSGRA  205 (514)
Q Consensus       162 ~~~~~~l~~~p~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~  205 (514)
                      ......++..|.+...+..++...                                    ...+.+.++.......+...
T Consensus       245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~  324 (615)
T TIGR00990       245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG  324 (615)
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence            444444444444433332222211                                    01122233333333322222


Q ss_pred             CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q 010276          206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY  285 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  285 (514)
                         ...+.....+..+|.++...|++++|+..+++++..+|+++..+..+|.++...|++++|+..|+++++.+|+++.+
T Consensus       325 ---~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  401 (615)
T TIGR00990       325 ---KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI  401 (615)
T ss_pred             ---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence               12355566678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC
Q 010276          286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK  364 (514)
Q Consensus       286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (514)
                      +..+|.++...|++++|+..|++++..+|++...+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999998888 99999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhHhhcCCh-HH------HHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHH
Q 010276          365 RPEAAVIAFRGAQELRPDL-RS------YQGLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK  436 (514)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~-~~------~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~  436 (514)
                      ++++|+..|++++.+.|+. ..      +...+.. +...|++++|+..+++++..+|++..++..+|.++... |++++
T Consensus       482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~-g~~~e  560 (615)
T TIGR00990       482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ-GDVDE  560 (615)
T ss_pred             CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-cCHHH
Confidence            9999999999999998874 22      2233333 34479999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      |+.+|++++++.+...+..        ....+.+|.....+..+..|.
T Consensus       561 Ai~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~~~~  600 (615)
T TIGR00990       561 ALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQEDYPV  600 (615)
T ss_pred             HHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999987754422        222455666666666555554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-34  Score=243.47  Aligned_cols=492  Identities=28%  Similarity=0.379  Sum_probs=415.2

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCC-ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      ++..++.+...+.++....++..+.+++.+++.. +++.....+..+.+..++.++|..|...|..++...         
T Consensus         3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~---------   73 (564)
T KOG1174|consen    3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKR---------   73 (564)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---------
Confidence            4567778888888888888888888877766654 667777777888888888899999999999888763         


Q ss_pred             hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHH
Q 010276           83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA  162 (514)
Q Consensus        83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  162 (514)
                      ...+....+....-..  ....+.+.+..+..+.||...++-+.|+..+..++.....+.....++..+-.-++..++.-
T Consensus        74 ~s~~r~s~~~~~s~~~--S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl  151 (564)
T KOG1174|consen   74 RLMMRHKNAVLVAIES--SYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVL  151 (564)
T ss_pred             Hhhccccccccccccc--cCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHH
Confidence            0111111111111111  12345678899999999999999999999999998888899999999999988888889999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH--HHHHH
Q 010276          163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL--ELFAE  240 (514)
Q Consensus       163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~--~~~~~  240 (514)
                      .|...+..+|--......+..+.+...+..+..-.....        .+..+|...+..+......++...|.  .++-.
T Consensus       152 ~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~--------~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le  223 (564)
T KOG1174|consen  152 AYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATV--------PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLH  223 (564)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheec--------CCCccHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence            999999999987777777777776665555444333332        23455666666666666666655554  45555


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276          241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF  320 (514)
Q Consensus       241 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  320 (514)
                      .....|+|.+.+..+|.+++..|++++|+..|+++..++|......-.+|.++...|+++.-..+...++........-|
T Consensus       224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w  303 (564)
T KOG1174|consen  224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW  303 (564)
T ss_pred             hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999887777777


Q ss_pred             HHHHHH-HhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCC
Q 010276          321 VALSVL-WERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK  398 (514)
Q Consensus       321 ~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  398 (514)
                      +.-+.. +..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.. +.|..+..+|...|+
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            766664 444999999999999999999999999999999999999999999999999999988 999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVG-DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      +.+|....+.++...|.++..+..+| .++.....-.++|.++++++++++|....+...++.++...|.+++++..+++
T Consensus       384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99999999999999999999999997 66655445679999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          478 YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      .+...|++..+..||+++...+.+.+|+++|..|+.+
T Consensus       464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999864

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=4.4e-35  Score=291.90  Aligned_cols=492  Identities=11%  Similarity=-0.040  Sum_probs=293.2

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      .+.........|+++.|+.....++...+.+        +.+++.++..|+..|++++|+...+++++.+|++......+
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L  118 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVPDN--------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL  118 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3455556667789998888888887743322        55779999999999999999999999999999888877776


Q ss_pred             hhhhhhccccCCCCccc---ccccCChhHHHHHHHHH--------HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 010276           84 SRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASC--------HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR  152 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  152 (514)
                      +.+    ++.++|...+   ....|++.++++.++..        |.+.++..+++. ...+...|......+.++++|.
T Consensus       119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~  193 (987)
T PRK09782        119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAI  193 (987)
T ss_pred             HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence            555    6777777666   23667778888887777        666666666665 3333333344445566688888


Q ss_pred             hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC-------------------------------cccHhHHHh---cc
Q 010276          153 NSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-------------------------------PKDIISLFA---QT  198 (514)
Q Consensus       153 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~---~~  198 (514)
                      .+|++++|+..+.++.+..|.+......|+.++..                               .++...+..   ..
T Consensus       194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~  273 (987)
T PRK09782        194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN  273 (987)
T ss_pred             HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            88888888888888888888777766666554443                               111111111   11


Q ss_pred             CCcCCCCC---------------------------------------------------------------------CC-
Q 010276          199 PNRSGRAP---------------------------------------------------------------------FD-  208 (514)
Q Consensus       199 ~~~~~~~~---------------------------------------------------------------------~~-  208 (514)
                      .......+                                                                     .. 
T Consensus       274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  353 (987)
T PRK09782        274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV  353 (987)
T ss_pred             cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence            11110100                                                                     00 


Q ss_pred             ----------------cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCC---h-
Q 010276          209 ----------------HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK---N-  265 (514)
Q Consensus       209 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~---~-  265 (514)
                                      ...+.+...+...+......|++++|..+++++....++.   ..+...++.+|...+.   . 
T Consensus       354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence                            0001111111122333444555555555555554421111   1122233333333322   1 


Q ss_pred             ------------------------HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHH
Q 010276          266 ------------------------DEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV  319 (514)
Q Consensus       266 ------------------------~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  319 (514)
                                              ..+...+.+++...|.  ++.++..+|.++.. +++++|+..+.+++...|++.. 
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-  511 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-  511 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-
Confidence                                    1112222223333344  56666666666665 5666666666666666665432 


Q ss_pred             HHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC
Q 010276          320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS  397 (514)
Q Consensus       320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  397 (514)
                      ...++..+.. |++++|+..++++....|. ...+..+|.++...|++++|+.+++++++..|+. ..+..++......|
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G  590 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG  590 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence            3333443333 6666666666666554443 3445566666666666666666666666666655 33444444555556


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      ++++|+..++++++.+|+ +..+..+|.++.+. |++++|+..|++++.++|+++.++.++|.++...|++++|+..+++
T Consensus       591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~  668 (987)
T PRK09782        591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER  668 (987)
T ss_pred             CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666666666666664 66666666666666 6666666666666666666666666666666666666666666666


Q ss_pred             HHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          478 YLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       478 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +++..|++. +++++|.++...|++++|+.+|+++++
T Consensus       669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            666666653 666666666666666666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.1e-36  Score=278.02  Aligned_cols=462  Identities=18%  Similarity=0.170  Sum_probs=289.4

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      ++-++...+..|+|..+..+-..++.+.+       ...+...+.+|.++++.|+.+.|+..|+++++++|.+..+..++
T Consensus       167 LlGkA~i~ynkkdY~~al~yyk~al~inp-------~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  167 LLGKARIAYNKKDYRGALKYYKKALRINP-------ACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL  239 (1018)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcCc-------ccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence            45566667777777777776666554322       22223456677888888888888888888888888777777777


Q ss_pred             hhhhhhccccCCCC---ccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCccHHHHHHHHHHHHh
Q 010276           84 SRSSLSTSNRSSSP---NSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS----KARNLQMSLLMAKLYRN  153 (514)
Q Consensus        84 ~~~~~~~~~~~~a~---~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~  153 (514)
                      +.+-+...+.+.-.   ..+   ....+.+|.+...++..++..|+|..+..+...+..    .+.-.+.++.+|++|..
T Consensus       240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha  319 (1018)
T KOG2002|consen  240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA  319 (1018)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            77666544432222   222   125567788888899988899999888888776422    23456678889999999


Q ss_pred             cCChhhHHHHHHHHHhcCCCC-HHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHH
Q 010276          154 SRHNRGAVACYKECLRHCPFF-IEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK  232 (514)
Q Consensus       154 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (514)
                      +|++++|..+|.++++.+|++ .-...++                                        |+.++..|+++
T Consensus       320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl----------------------------------------gQm~i~~~dle  359 (1018)
T KOG2002|consen  320 QGDFEKAFKYYMESLKADNDNFVLPLVGL----------------------------------------GQMYIKRGDLE  359 (1018)
T ss_pred             hccHHHHHHHHHHHHccCCCCccccccch----------------------------------------hHHHHHhchHH
Confidence            999999999999999888877 4445555                                        55555555555


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276          233 GGLELFAELLQRFPNNIHILLEMAKVDAIIG----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       233 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  308 (514)
                      .|..+|+++++..|++.++...+|.+|...+    ..+.|..+..+++...|.+.++|..++.++....-+.. +..|..
T Consensus       360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~  438 (1018)
T KOG2002|consen  360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN  438 (1018)
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence            5555555555555555555555555555543    34555555555555555555555555555443333322 444444


Q ss_pred             Hhhc-----CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-----cccC-----chhHHHHHHHHHhcCChHHHHHH
Q 010276          309 LLSI-----DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-----DERH-----IPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       309 ~~~~-----~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      ++..     .+-.++.+.++|.++.. |++.+|...|..++..     +++.     ....+++|.++...++++.|.+.
T Consensus       439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~  518 (1018)
T KOG2002|consen  439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM  518 (1018)
T ss_pred             HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence            4421     22334455555554444 5555555555555443     1111     11245555555555555555555


Q ss_pred             HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------
Q 010276          373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA--------------------  431 (514)
Q Consensus       373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------------------  431 (514)
                      |..+++..|.+ .++..+|......++..+|...++.++..+..++.++..+|.++....                    
T Consensus       519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~  598 (1018)
T KOG2002|consen  519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT  598 (1018)
T ss_pred             HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence            55555555555 455555544444555555555555555555444444444443332210                    


Q ss_pred             ---------------------------CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          432 ---------------------------SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       432 ---------------------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                                                 +.+++|+..|.++++.+|.+..+-..+|.++...|++.+|+.+|.++.+...+
T Consensus       599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~  678 (1018)
T KOG2002|consen  599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD  678 (1018)
T ss_pred             chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence                                       34577888888888888888888888888888888888888888888776653


Q ss_pred             c-hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          485 D-SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       485 ~-~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      . ++|.++|.||..+|+|..|++.|+.+++
T Consensus       679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lk  708 (1018)
T KOG2002|consen  679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLK  708 (1018)
T ss_pred             CCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 5888888888888888888888887764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=2.1e-34  Score=281.59  Aligned_cols=349  Identities=13%  Similarity=0.035  Sum_probs=308.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcc
Q 010276          111 KYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK  189 (514)
Q Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  189 (514)
                      ....+..+...|++++|+..++.+. ..|.++++++.+|.+....|++++|+..|++++..+|++..++..+        
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l--------  116 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV--------  116 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH--------
Confidence            3455677788999999999999864 4489999999999999999999999999999999999999888666        


Q ss_pred             cHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHH
Q 010276          190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI  269 (514)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  269 (514)
                                                      |.++...|++++|+..+++++..+|+++.++..++.++...|++++|+
T Consensus       117 --------------------------------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~  164 (656)
T PRK15174        117 --------------------------------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI  164 (656)
T ss_pred             --------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence                                            888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc
Q 010276          270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDE  347 (514)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~  347 (514)
                      ..+++++...|+++.++..++ .+...|++++|+..+++++...|.. ......++.++.. |++++|+..+++++..+|
T Consensus       165 ~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p  243 (656)
T PRK15174        165 SLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL  243 (656)
T ss_pred             HHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999999999999988877664 4788999999999999999887644 3344445666655 999999999999999999


Q ss_pred             cCchhHHHHHHHHHhcCChHH----HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          348 RHIPGYIMKGNLLLSMKRPEA----AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      +++.++..+|.++...|++++    |+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus       244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999986    899999999999998 789999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc------hHHHHHHHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA  496 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~  496 (514)
                      +|.++... |++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++      ++...+...+.
T Consensus       324 La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~  402 (656)
T PRK15174        324 YARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQIS  402 (656)
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHH
Confidence            99999998 999999999999999999988877788999999999999999999999999875      23444444444


Q ss_pred             HhccH
Q 010276          497 ATNML  501 (514)
Q Consensus       497 ~~g~~  501 (514)
                      ..+..
T Consensus       403 ~~~~~  407 (656)
T PRK15174        403 AVNLP  407 (656)
T ss_pred             hcCCc
Confidence            44444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-33  Score=241.37  Aligned_cols=436  Identities=22%  Similarity=0.280  Sum_probs=363.6

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET  124 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  124 (514)
                      ..+.+|.+++..+.|+.|.-.++......     .....-.+....|..++-               -..+.+....+.+
T Consensus        80 ~~y~laks~fd~kEf~Raa~fL~~~~s~k-----~~FL~lysk~La~~kk~~---------------e~~~~~l~~~~~~  139 (559)
T KOG1155|consen   80 DIYLLAKSYFDCKEFERAAFFLQNCKSKK-----SAFLRLYSKYLAGEKKSE---------------EEMAELLGRLESF  139 (559)
T ss_pred             chhhhHhhhhhhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHhhhHHHH---------------HHHHHhhccchhh
Confidence            45789999999999999999998876531     111111111111111111               1111122122222


Q ss_pred             HHHH---HHHhc----C-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276          125 KAAI---VEMEG----I-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       125 ~~A~---~~~~~----~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      ..-.   ..+.+    . .....++-.+++.|.++.+.|....|+..|..++...|.++.+|..|..+............
T Consensus       140 ~~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~  219 (559)
T KOG1155|consen  140 SRINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV  219 (559)
T ss_pred             hhhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh
Confidence            2211   11111    1 12256778889999999999999999999999999999999999999888765554433332


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  275 (514)
                      .+.           ....|+..+..+.++....+.++++.-++..... .|.++..-...|.+.....++++|+..|+.+
T Consensus       220 ~l~-----------~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei  288 (559)
T KOG1155|consen  220 GLP-----------SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI  288 (559)
T ss_pred             cCc-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            221           2278888999999999999999999999999887 8999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH
Q 010276          276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI  354 (514)
Q Consensus       276 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~  354 (514)
                      .+.+|...+-.-.+.++++-.++-.+-.-+.+.+..++.-.|+....+|+.|.. ++.++|+.+|+++++++|....+|.
T Consensus       289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT  368 (559)
T KOG1155|consen  289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT  368 (559)
T ss_pred             HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH
Confidence            999999998889999999988888887778888889999999999999999988 9999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG  433 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  433 (514)
                      .+|.-|..+.+...|+..|++|++++|.+ .+|+.+|+.|.-++.+.=|+-+|+++....|+++..|..+|.||.+. ++
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~  447 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NR  447 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-cc
Confidence            99999999999999999999999999998 99999999999999999999999999999999999999999999999 99


Q ss_pred             hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC-------CCc-hHHHHHHHHHHHhccHHHHH
Q 010276          434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-~~~~~l~~~~~~~g~~~~A~  505 (514)
                      .++|+++|.+++..+..+..++..||.+|.++++.++|..+|++.++..       |.- .+...|+..+.+.+++++|.
T Consensus       448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As  527 (559)
T KOG1155|consen  448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS  527 (559)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence            9999999999999998888999999999999999999999999999844       222 47777999999999999999


Q ss_pred             HHHHHHh
Q 010276          506 SHYEAAL  512 (514)
Q Consensus       506 ~~~~~al  512 (514)
                      .+..+++
T Consensus       528 ~Ya~~~~  534 (559)
T KOG1155|consen  528 YYATLVL  534 (559)
T ss_pred             HHHHHHh
Confidence            8877665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=6.4e-33  Score=276.52  Aligned_cols=422  Identities=11%  Similarity=-0.057  Sum_probs=330.2

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      ...++..|..+...|++++|+..|+++++.+|                               +++.+++.++.+|+..|
T Consensus        44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP-------------------------------~n~~~~~~LA~~yl~~g   92 (987)
T PRK09782         44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP-------------------------------DNIPLTLYLAEAYRHFG   92 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------------------------------CCHHHHHHHHHHHHHCC
Confidence            44566777888888999999999999999988                               44667788889999999


Q ss_pred             CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHh--------ccCcccHhH
Q 010276          123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL--------GATPKDIIS  193 (514)
Q Consensus       123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--------~~~~~~~~~  193 (514)
                      ++++|+..+++. ...|.+...+..++.+    +++++|+..|+++++.+|++.++...++..        +...++...
T Consensus        93 ~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~  168 (987)
T PRK09782         93 HDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARA  168 (987)
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHH
Confidence            999999999994 4558888888777666    889999999999999999999999888887        666666666


Q ss_pred             HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCChHHHHHHH
Q 010276          194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNF  272 (514)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~  272 (514)
                      +++  ....      ...+......+.+..+|...|++++|+..+.++.+..|.+......++.+|.. +++ +++..++
T Consensus       169 AL~--lr~~------~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~  239 (987)
T PRK09782        169 QLN--DATF------AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQ  239 (987)
T ss_pred             HHH--Hhhh------CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence            665  2221      12233444555668899999999999999999998888887777777766666 344 5555554


Q ss_pred             HHHHhhCCCCHHHHHHHHHH------------------------------------------------------------
Q 010276          273 EKVRSIDPYIMTYMDEYAML------------------------------------------------------------  292 (514)
Q Consensus       273 ~~~~~~~~~~~~~~~~l~~~------------------------------------------------------------  292 (514)
                      +..++   .++.++..++..                                                            
T Consensus       240 ~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~  316 (987)
T PRK09782        240 SQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVV  316 (987)
T ss_pred             chhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHH
Confidence            33221   222222222222                                                            


Q ss_pred             ---------------------------------------------------------------------HHHhCChhHHH
Q 010276          293 ---------------------------------------------------------------------LKVKCDYSKLS  303 (514)
Q Consensus       293 ---------------------------------------------------------------------~~~~~~~~~A~  303 (514)
                                                                                           ....|+.++|.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~  396 (987)
T PRK09782        317 GATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA  396 (987)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence                                                                                 22334444444


Q ss_pred             HHHHHHhh-----------------------------------------------------------------cCCC--C
Q 010276          304 KLVHDLLS-----------------------------------------------------------------IDPS--R  316 (514)
Q Consensus       304 ~~~~~~~~-----------------------------------------------------------------~~~~--~  316 (514)
                      ..++++..                                                                 ..|.  +
T Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~  476 (987)
T PRK09782        397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD  476 (987)
T ss_pred             HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence            43333322                                                                 1122  4


Q ss_pred             hHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhc
Q 010276          317 PEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF  396 (514)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (514)
                      +.+++.+|.++..+++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|....+..+|.++...
T Consensus       477 ~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~  555 (987)
T PRK09782        477 AAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA  555 (987)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence            4556667777766777788888888888888743 355667777899999999999999887777777788999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHH
Q 010276          397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE  476 (514)
Q Consensus       397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (514)
                      |++++|..+++++++..|++......++...... |++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..++
T Consensus       556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~-Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~  633 (987)
T PRK09782        556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP-GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR  633 (987)
T ss_pred             CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999988888888888787 9999999999999999997 8999999999999999999999999


Q ss_pred             HHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          477 RYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       477 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      +++...|++. ++..+|.++...|++++|+..|++++++
T Consensus       634 ~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l  672 (987)
T PRK09782        634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG  672 (987)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999985 9999999999999999999999999863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=8.9e-34  Score=277.13  Aligned_cols=334  Identities=13%  Similarity=0.008  Sum_probs=307.8

Q ss_pred             ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhH
Q 010276          139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR  218 (514)
Q Consensus       139 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (514)
                      .+.......+..+...|++++|...++.++...|.+..++..+                                     
T Consensus        40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l-------------------------------------   82 (656)
T PRK15174         40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW-------------------------------------   82 (656)
T ss_pred             ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------------------------------
Confidence            3444556677888899999999999999999999999988766                                     


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                         +.+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.++...|+
T Consensus        83 ---~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~  159 (656)
T PRK15174         83 ---VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK  159 (656)
T ss_pred             ---hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence               66677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccC-chhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      +++|+..+++++...|+++..+..++..+..|++++|+..+++++...|.. ......++.++...|++++|+..+++++
T Consensus       160 ~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al  239 (656)
T PRK15174        160 ELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL  239 (656)
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999998877765555599999999999999987643 3445567889999999999999999999


Q ss_pred             hhcCCh-HHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276          378 ELRPDL-RSYQGLVHSYLQFSKVKE----ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       378 ~~~~~~-~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      ...|++ .++..+|.++...|++++    |+..+++++..+|+++.++..+|.++... |++++|+..++++++.+|+++
T Consensus       240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT-GQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCH
Confidence            999998 789999999999999986    89999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .++..+|.++...|++++|+..|++++...|+.. .+..+|.++...|++++|+..|+++++
T Consensus       319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875 566679999999999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-34  Score=245.32  Aligned_cols=408  Identities=17%  Similarity=0.142  Sum_probs=294.7

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      +..+...|+-+|+.|+|++||++|.+||+.+|+.|.++..++.||.                               ..|
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-------------------------------~lg  163 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-------------------------------SLG  163 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-------------------------------HHh
Confidence            5678889999999999999999999999999977766555555554                               566


Q ss_pred             CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHhccCcc-----------
Q 010276          123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPK-----------  189 (514)
Q Consensus       123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~-----------  189 (514)
                      ++++.++.+.+. ...|....+++.++..+...|++++|+....-.--... .+......+-+.....+           
T Consensus       164 d~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~n  243 (606)
T KOG0547|consen  164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKEN  243 (606)
T ss_pred             hHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Confidence            666666655552 33356666666666666666666666544332211110 00000000000000000           


Q ss_pred             ---------cHhHHHhccCCcCCCCCCCcCC-chhHHhHHHHHHHHHHh---cCHHHHHHHHHHHHHhC----CCc----
Q 010276          190 ---------DIISLFAQTPNRSGRAPFDHLD-SSRWLHRYVEAQCCIAS---NDYKGGLELFAELLQRF----PNN----  248 (514)
Q Consensus       190 ---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~----p~~----  248 (514)
                               -+...+......+........+ .+....   .+...+..   ..|..|...+.+.....    ..+    
T Consensus       244 r~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~---~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~  320 (606)
T KOG0547|consen  244 RPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA---EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA  320 (606)
T ss_pred             CCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH---HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence                     0011111111111111111111 111111   12222222   36777777766654321    112    


Q ss_pred             -----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276          249 -----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       249 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                           ..++...|..++-.|++-.|...|++++.++|.+...+..++.+|...++.++....|.++..++|.++++++..
T Consensus       321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR  400 (606)
T KOG0547|consen  321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR  400 (606)
T ss_pred             hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence                 567778888888999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHH
Q 010276          324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  401 (514)
                      |.+... +++++|+.-|++++.++|++...+..++.+.+++++++++...|+.+.+..|+. +.+...|.++..++++++
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~  480 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK  480 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence            998877 999999999999999999999999999999999999999999999999999997 788888999999999999


Q ss_pred             HHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276          402 ALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       402 A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      |++.|.+++.+.|.      ++..+...|.+..+..+++..|+..+++|++++|....++..||.+..++|+.++|+++|
T Consensus       481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF  560 (606)
T KOG0547|consen  481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF  560 (606)
T ss_pred             HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999988      677777777766665588999999999999999999899999999999999999999999


Q ss_pred             HHHHhhCCC
Q 010276          476 ERYLKDWAD  484 (514)
Q Consensus       476 ~~~~~~~~~  484 (514)
                      ++++.+..+
T Consensus       561 Eksa~lArt  569 (606)
T KOG0547|consen  561 EKSAQLART  569 (606)
T ss_pred             HHHHHHHHh
Confidence            998887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-33  Score=261.75  Aligned_cols=453  Identities=17%  Similarity=0.186  Sum_probs=379.2

Q ss_pred             hHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCC
Q 010276           18 DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP   97 (514)
Q Consensus        18 ~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~   97 (514)
                      +.|.....+++..        .+.++..++-.|.+.+..|+|..|+.+|++++..+|..                     
T Consensus       147 ~~A~a~F~~Vl~~--------sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~---------------------  197 (1018)
T KOG2002|consen  147 DDADAQFHFVLKQ--------SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC---------------------  197 (1018)
T ss_pred             HHHHHHHHHHHhh--------CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc---------------------
Confidence            4555544545442        23345578888889999999999999999999998853                     


Q ss_pred             cccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCCC
Q 010276           98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH---NRGAVACYKECLRHCPF  173 (514)
Q Consensus        98 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~  173 (514)
                               .++++..+|.|+.++|+.+.|+..++++ ...|.+..++..||.+-....+   +..++..+.++...+|.
T Consensus       198 ---------~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~  268 (1018)
T KOG2002|consen  198 ---------KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE  268 (1018)
T ss_pred             ---------CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence                     3667788899999999999999999984 4558899999999988777654   67899999999999999


Q ss_pred             CHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHH
Q 010276          174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHIL  252 (514)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~  252 (514)
                      ++.+...|+..+...++...+...+........   ..+......|..|+++..+|+|++|..+|.++++.+|++ .-.+
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            999999999999999988777666655543332   122333456888999999999999999999999999988 7788


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC----ChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                      +.+|+.+...|+++.|+.+|+++++..|++.+....+|.+|...+    ..+.|..++.+++...|.+.++|..++.++.
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE  425 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999886    6688999999999999999999999999999


Q ss_pred             hcChhHHHHHHHHHHHh-----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCCh------HHHHHHHHH
Q 010276          329 RKDERGALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL------RSYQGLVHS  392 (514)
Q Consensus       329 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------~~~~~l~~~  392 (514)
                      .++...++..|.+++.+     .+-.++.++++|..++..|++++|...|.++...     +++.      ..-++++.+
T Consensus       426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence            99988889999998853     2334678899999999999999999999999876     1221      247899999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--------
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI--------  464 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------  464 (514)
                      +...++++.|.+.|..+++.+|...+.+..+|.+.... +...+|...+..++..+..+|.++..+|.++..        
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k-~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~  584 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK-NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK  584 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc-cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence            99999999999999999999999999999999666666 999999999999999998888888777766622        


Q ss_pred             ----------------------------------------cCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHH
Q 010276          465 ----------------------------------------EGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQE  503 (514)
Q Consensus       465 ----------------------------------------~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~  503 (514)
                                                              .+.+++|+..|.++++.+|.+- +-..+|.++...|++.+
T Consensus       585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~  664 (1018)
T KOG2002|consen  585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE  664 (1018)
T ss_pred             cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence                                                    3345677777777777777774 66677778888888888


Q ss_pred             HHHHHHHHh
Q 010276          504 ALSHYEAAL  512 (514)
Q Consensus       504 A~~~~~~al  512 (514)
                      |..+|.++.
T Consensus       665 A~dIFsqVr  673 (1018)
T KOG2002|consen  665 ARDIFSQVR  673 (1018)
T ss_pred             HHHHHHHHH
Confidence            888877764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=4.6e-32  Score=270.95  Aligned_cols=392  Identities=13%  Similarity=0.041  Sum_probs=272.5

Q ss_pred             HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHH
Q 010276           48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA  127 (514)
Q Consensus        48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  127 (514)
                      -...+..-.|++++|++.|.++...+|                               .+..++..+|.++...|++++|
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~~-------------------------------~~a~~~~~lA~~~~~~g~~~~A   68 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHMQ-------------------------------LPARGYAAVAVAYRNLKQWQNS   68 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHH
Confidence            344566678999999999988887655                               4455567777777788888888


Q ss_pred             HHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276          128 IVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP  206 (514)
Q Consensus       128 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  206 (514)
                      +..++++ ...|.++.++..++.++...|++++|+..++++++..|++.. +..+                         
T Consensus        69 ~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l-------------------------  122 (765)
T PRK10049         69 LTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL-------------------------  122 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH-------------------------
Confidence            8888774 334777777778888888888888888888888888887777 5544                         


Q ss_pred             CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH--
Q 010276          207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT--  284 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--  284 (514)
                                     |.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .|....  
T Consensus       123 ---------------a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l  186 (765)
T PRK10049        123 ---------------AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDL  186 (765)
T ss_pred             ---------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHH
Confidence                           66677778888888888888888888877777778777777777778777776665 443211  


Q ss_pred             ---HHHHHHHHHH-----HhCCh---hHHHHHHHHHhhcCCCChHHHH--------HHHHHHhhcChhHHHHHHHHHHHh
Q 010276          285 ---YMDEYAMLLK-----VKCDY---SKLSKLVHDLLSIDPSRPEVFV--------ALSVLWERKDERGALSYAEKSIRI  345 (514)
Q Consensus       285 ---~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~A~~~~~~~~~~  345 (514)
                         .......+..     ..+++   ++|+..++.+++..|.+|....        .++.++..|++++|+..|+++++.
T Consensus       187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~  266 (765)
T PRK10049        187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE  266 (765)
T ss_pred             HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence               1111122221     12233   6677777777755444332211        134444447777888888887776


Q ss_pred             cccCch-hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 010276          346 DERHIP-GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ----  415 (514)
Q Consensus       346 ~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----  415 (514)
                      .|..|. +...+|.++...|++++|+..|++++...|..     .....++.++...|++++|+..++++....|.    
T Consensus       267 ~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~  346 (765)
T PRK10049        267 GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL  346 (765)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence            543222 33335777777888888888888777766543     24556666777778888888888777776652    


Q ss_pred             -----------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          416 -----------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       416 -----------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                                 ...++..++.++... |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+
T Consensus       347 ~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd  425 (765)
T PRK10049        347 YGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR  425 (765)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence                       134566777777777 88888888888888888888778888888888888888888888888888777


Q ss_pred             ch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          485 DS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       485 ~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +. +++.+|.++...|++++|...++++++
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            64 777777777788888888877777664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=2.4e-31  Score=265.80  Aligned_cols=409  Identities=12%  Similarity=0.030  Sum_probs=321.9

Q ss_pred             HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276            5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS   84 (514)
Q Consensus         5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   84 (514)
                      -+.+....-.|+++.|+.+...+...        .+..+.++..+|..+...|++++|+..|+++++.+|          
T Consensus        19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P----------   80 (765)
T PRK10049         19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP----------   80 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Confidence            34566777888899988766655431        233455799999999999999999999999999987          


Q ss_pred             hhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276           85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC  163 (514)
Q Consensus        85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  163 (514)
                                           .++.++..++.++...|++++|+..++++ ...|.++. +..+|.++...|++++|+..
T Consensus        81 ---------------------~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~  138 (765)
T PRK10049         81 ---------------------QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA  138 (765)
T ss_pred             ---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence                                 44566778888999999999999999995 44588888 99999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276          164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ  243 (514)
Q Consensus       164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  243 (514)
                      ++++++..|++..++..+                                        +.++...|..+.|+..++++..
T Consensus       139 l~~al~~~P~~~~~~~~l----------------------------------------a~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEY----------------------------------------VQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHhCCCCHHHHHHH----------------------------------------HHHHHHCCChHHHHHHHHhCCC
Confidence            999999999999988766                                        5566666778888887776654


Q ss_pred             hCCCcH-----HHHHHHHHHHH-----HhCCh---HHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCChhHHH
Q 010276          244 RFPNNI-----HILLEMAKVDA-----IIGKN---DEAILNFEKVRSIDPYIMTY-------MDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       244 ~~p~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~  303 (514)
                       .|+..     .....+..+..     ..+++   ++|+..++.+++..|.++..       .......+...|++++|+
T Consensus       179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~  257 (765)
T PRK10049        179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI  257 (765)
T ss_pred             -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence             44320     11112222222     22334   77888888888664433322       222122345778899999


Q ss_pred             HHHHHHhhcCCCChH-HHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          304 KLVHDLLSIDPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      ..|++++...|..|. +...++.++.. |++++|+..|++++..+|.+    ......++.++...|++++|+..++++.
T Consensus       258 ~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~  337 (765)
T PRK10049        258 SEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI  337 (765)
T ss_pred             HHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            999998887654332 33335666666 88999999999988877765    2345667777888999999999999888


Q ss_pred             hhcC-------------Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276          378 ELRP-------------DL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       378 ~~~~-------------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                      ...|             ++   .++..++.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..+
T Consensus       338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l  416 (765)
T PRK10049        338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR-GWPRAAENEL  416 (765)
T ss_pred             hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence            8766             21   35678899999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276          442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF  495 (514)
Q Consensus       442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  495 (514)
                      ++++.++|+++.+++.+|.++...|++++|...++++++..|++.....+...+
T Consensus       417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997666666555

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-31  Score=231.02  Aligned_cols=230  Identities=18%  Similarity=0.221  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL  361 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      ..++...|..++-.|+.-.|...++.++.++|..+..+..++.+|.. .+..+....|.++..++|.++++|+.+|.+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            56777888888999999999999999999999999999999999988 88889999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276          362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF  440 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~  440 (514)
                      -++++++|+..|++++.++|++ -++..++.+.+++++++++...|+.+.+.+|+.++++...|.++..+ +++++|++.
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~  484 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQ  484 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHH
Confidence            9999999999999999999999 88999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHhhCCC------ChHHHHHHHHHH-HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          441 YESALRLEPG------YLGAALALAELH-VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       441 ~~~a~~~~~~------~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      |.+++.+.|.      ++..+..-|.+. ...+++..|+.+++++++++|.++ ++..||.+..++|+.++|+++|++++
T Consensus       485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999998      555444444332 234899999999999999999987 99999999999999999999999987


Q ss_pred             c
Q 010276          513 R  513 (514)
Q Consensus       513 ~  513 (514)
                      .
T Consensus       565 ~  565 (606)
T KOG0547|consen  565 Q  565 (606)
T ss_pred             H
Confidence            5

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-30  Score=226.45  Aligned_cols=461  Identities=19%  Similarity=0.195  Sum_probs=294.5

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      ....++..+.+.+|..|..+++.+..+.         .++...+.+|++++-.|+|.+|....+.- .+.          
T Consensus        19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~---------~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le----------   78 (611)
T KOG1173|consen   19 YRRLVRDALMQHRYKTALFWADKVAGLT---------NDPADIYWLAQVLYLGRQYERAAHLITTY-KLE----------   78 (611)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhh----------
Confidence            4456677889999999999999997744         33446799999999999999998887764 221          


Q ss_pred             hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCc-----------------
Q 010276           84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-------PSKAR-----------------  139 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~-----------------  139 (514)
                                           ..+...++..+.|+.+..++++|+.++...       ...+.                 
T Consensus        79 ---------------------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~  137 (611)
T KOG1173|consen   79 ---------------------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMI  137 (611)
T ss_pred             ---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccc
Confidence                                 145667788889999999999999888721       00011                 


Q ss_pred             --cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcc-cHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276          140 --NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK-DIISLFAQTPNRSGRAPFDHLDSSRWL  216 (514)
Q Consensus       140 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (514)
                        .....+..|.+|....+.++|...|.+++..++.+.++...+.....-.. +....+....-..  .  ...+.....
T Consensus       138 ~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~--~--~~ed~e~l~  213 (611)
T KOG1173|consen  138 NLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM--L--TKEDVERLE  213 (611)
T ss_pred             cchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh--h--hhhHHHHHH
Confidence              12334778999999999999999999999999999999877754332211 1111111100000  0  000000000


Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276          217 HRYVEAQCCIASNDYKGGLELFA-ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV  295 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~-~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (514)
                      .++..-.+   ...-+.+...-. ..+..-.+++++....+..++..+++.+..+.++..++.+|-+...+.....++..
T Consensus       214 ~lyel~~~---k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~e  290 (611)
T KOG1173|consen  214 ILYELKLC---KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYE  290 (611)
T ss_pred             HHHHhhhh---hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHH
Confidence            00000000   000000000000 11111123456666666777777777777777777777777666655554446666


Q ss_pred             hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                      .|+..+-..+-.++++..|+.+..|+..|..|.. |++.+|.++|.++..++|....+|...|..+...|..++|+.+|.
T Consensus       291 l~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~  370 (611)
T KOG1173|consen  291 LGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF  370 (611)
T ss_pred             hcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence            7776666666666777777777777777766666 777777777777777777777777777777777777777777777


Q ss_pred             HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CC
Q 010276          375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL----EP  449 (514)
Q Consensus       375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~  449 (514)
                      .|-++.|.. .....+|.-|...++++-|..+|.+++.+.|.+|-++..+|.+.... +.+.+|..+|+.++..    .+
T Consensus       371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccc
Confidence            777766665 55666677777777777777777777777777777777777776666 6777777777776632    11


Q ss_pred             ---CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          450 ---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       450 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                         .....+.+||.++.+.+.+++|+..+++++.+.|.+. ++..+|.+|..+|+++.|+++|.++|-
T Consensus       450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence               1233566677777777777777777777777776653 666777777777777777777777664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.4e-32  Score=242.04  Aligned_cols=295  Identities=25%  Similarity=0.337  Sum_probs=279.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      +..+......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|...+..-.+..+++...+
T Consensus       323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~  402 (638)
T KOG1126|consen  323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD  402 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence            33445555667889999999997778888889999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      .-+--.+.+.++..+|+.|+.|..+|+++.. ++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++
T Consensus       403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al  482 (638)
T KOG1126|consen  403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL  482 (638)
T ss_pred             hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence            8888888899999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          378 ELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       378 ~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      ..+|.+ .+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+. |+.++|+..|++|+.++|.++-..+
T Consensus       483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhHH
Confidence            999998 99999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      ..|.++...+++++|+..+++..+..|+.. +++.+|.+|.++|+.+.|+..|--|+++
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            999999999999999999999999999985 9999999999999999999999877654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.97  E-value=1.7e-26  Score=226.19  Aligned_cols=436  Identities=13%  Similarity=-0.012  Sum_probs=336.9

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      .+..+...+..+.+.+++|++..|+..|+++++.+|.++.                              .+. .++.++
T Consensus        30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------------------------------av~-dll~l~   78 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------------------------------QVD-DWLQIA   78 (822)
T ss_pred             CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------------------------------hHH-HHHHHH
Confidence            3446778899999999999999999999999999886531                              122 566777


Q ss_pred             HhcCCHHHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhc
Q 010276          119 FALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ  197 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  197 (514)
                      ...|+.++|+..+++... .+........+|.++...|++++|++.|+++++.+|+++.++..++..+...++..++++.
T Consensus        79 ~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~  158 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ  158 (822)
T ss_pred             HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence            778999999999999542 2555666666688999999999999999999999999999999888888888888888888


Q ss_pred             cCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276          198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS  277 (514)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  277 (514)
                      +.......+.      .... ..++.++...++..+|+..++++++.+|++.+++..+..++...|-...|.+...+--.
T Consensus       159 l~~l~~~dp~------~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~  231 (822)
T PRK14574        159 ATELAERDPT------VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN  231 (822)
T ss_pred             HHHhcccCcc------hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence            8777655442      1111 33355555567777799999999999999999999999999999999999877776433


Q ss_pred             hCCCCHHHHHHHH--HHHHH---------hCC---hhHHHHHHHHHhhcCCCChH---HHH-----HHHHHHhhcChhHH
Q 010276          278 IDPYIMTYMDEYA--MLLKV---------KCD---YSKLSKLVHDLLSIDPSRPE---VFV-----ALSVLWERKDERGA  335 (514)
Q Consensus       278 ~~~~~~~~~~~l~--~~~~~---------~~~---~~~A~~~~~~~~~~~~~~~~---~~~-----~l~~~~~~~~~~~A  335 (514)
                      ........+....  .-..+         .++   .+.|+..++.++...|..|.   .+.     .++.+...+++.++
T Consensus       232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v  311 (822)
T PRK14574        232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL  311 (822)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence            3222211121111  11111         112   35577777777775444442   221     22333333999999


Q ss_pred             HHHHHHHHHhc-ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          336 LSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       336 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      ++.|+...... |-.+.+....|..|...+++++|+.+|++++...|.      . .....|..++...+++++|..+++
T Consensus       312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~  391 (822)
T PRK14574        312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV  391 (822)
T ss_pred             HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence            99999887654 223456777999999999999999999999876532      1 335778899999999999999999


Q ss_pred             HHHhhCC---------------CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276          408 EAMKAMP---------------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       408 ~~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      +..+..|               +.......++.++... |+..+|++.+++.+...|.++.++..+|.++...|.+.+|.
T Consensus       392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~-gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~  470 (822)
T PRK14574        392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL-NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAE  470 (822)
T ss_pred             HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            9987444               2356777888888888 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          473 SLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       473 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ..++.+..+.|++. +...+|.++..+|++.+|....+.+++
T Consensus       471 ~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~  512 (822)
T PRK14574        471 QELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS  512 (822)
T ss_pred             HHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99999999999985 888999999999999999888876654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.9e-27  Score=201.35  Aligned_cols=368  Identities=17%  Similarity=0.167  Sum_probs=247.2

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      .+.-.+++.|.++-+.|....|+..|..++...|-...+|..+..+.-                                
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit--------------------------------  209 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT--------------------------------  209 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--------------------------------
Confidence            335578889999999999999999999999888866655554443321                                


Q ss_pred             cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       121 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                        +.+.+......++. ..+.-.-+.++.++....+.++++.-++..... .|.+.......                  
T Consensus       210 --~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~------------------  268 (559)
T KOG1155|consen  210 --DIEILSILVVGLPS-DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQI------------------  268 (559)
T ss_pred             --hHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHH------------------
Confidence              01111111111111 123333355566666666666666666666655 45444433322                  


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID  279 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  279 (514)
                                            |.+.....++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-.-.-+.+..++
T Consensus       269 ----------------------A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id  326 (559)
T KOG1155|consen  269 ----------------------AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID  326 (559)
T ss_pred             ----------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc
Confidence                                  5666666777777777777777777666555566666666655555445555666666


Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      .-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|.. ++...|+..|+++++++|.+-.+|+.+|.
T Consensus       327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ  406 (559)
T ss_pred             cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence            66677777777777777777777777777777777777777777776666 67777777777777777777777777777


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      .|.-++-+.=|+-+|+++....|.+ ..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.+. ++.++|
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eA  485 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEA  485 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHH
Confidence            7777777777777777777777776 67777777777777777777777777777766777777777777777 777777


Q ss_pred             HHHHHHHHh-------hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          438 KKFYESALR-------LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       438 ~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      ..+|++.++       .+|+...+..-|+.-+.+.+++++|..+...++.-.+.
T Consensus       486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE  539 (559)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence            777777776       34444556666777777777777777777776665443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=4.7e-27  Score=220.21  Aligned_cols=295  Identities=18%  Similarity=0.147  Sum_probs=262.5

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML  292 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~  292 (514)
                      ..+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ...+..+|.+
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~  116 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD  116 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            346678999999999999999999999999999999999999999999999999999998854332    3568899999


Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch-----hHHHHHHHHHhcCCh
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRP  366 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  366 (514)
                      +...|++++|...|+++++..|.+..++..++.++.. |++++|+..++++++..|.+..     .+..+|.++...|++
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999998887 9999999999999998876543     456789999999999


Q ss_pred             HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      ++|+..|+++++..|+. .++..+|.++...|++++|+..+++++..+|.+ ...+..++.++... |++++|+..++++
T Consensus       197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~  275 (389)
T PRK11788        197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            99999999999999987 789999999999999999999999999998876 46678899999998 9999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH---hccHHHHHHHHHHHhc
Q 010276          445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA---TNMLQEALSHYEAALR  513 (514)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~  513 (514)
                      ++..|+... ...++.++.+.|++++|+..++++++..|++..+..+...+..   .|+..+|+..+++.++
T Consensus       276 ~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        276 LEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            999998754 4889999999999999999999999999998755555444443   5688999998887663

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.6e-28  Score=221.27  Aligned_cols=263  Identities=14%  Similarity=0.072  Sum_probs=217.7

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      |..|+..++|++|..+|+.+-+..|-..+-.-....+++.+.+.-+---..+..++.+|..|+.|..+|.++..+++++.
T Consensus       360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~  439 (638)
T KOG1126|consen  360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT  439 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence            77888888888888888888888776666555666666666665555555666777788888888888888888888888


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276          302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  380 (514)
                      |+++|+++++++|....++..+|.-+.. .+++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++
T Consensus       440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN  519 (638)
T KOG1126|consen  440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN  519 (638)
T ss_pred             HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence            8888888888888888888888876655 788888888888888888888888888888888888888888888888888


Q ss_pred             CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      |.+ .....+|.++.+.|+.++|+.++++|+.++|.++-..+..|.++... +++++|+..+++.-++.|+...+++.+|
T Consensus       520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~-~~~~eal~~LEeLk~~vP~es~v~~llg  598 (638)
T KOG1126|consen  520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL-GRYVEALQELEELKELVPQESSVFALLG  598 (638)
T ss_pred             ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh-cchHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            888 56778888888888888888888888888888888888888888888 8888888888888888888888888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          460 ELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .+|.+.|+.+.|+..|.-+.+++|..
T Consensus       599 ki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  599 KIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHccchHHHHhhHHHhcCCCcc
Confidence            88888888888888888888888764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=9.7e-27  Score=218.10  Aligned_cols=299  Identities=18%  Similarity=0.207  Sum_probs=251.4

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276          140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY  219 (514)
Q Consensus       140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (514)
                      .....+..|..+...|++++|+..|+++++.+|++..++..+                                      
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------------------------------   75 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL--------------------------------------   75 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH--------------------------------------
Confidence            445567778888899999999999999999999887776555                                      


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV  295 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (514)
                        |.++...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|+++++.+|.+..++..++.++..
T Consensus        76 --a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  153 (389)
T PRK11788         76 --GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ  153 (389)
T ss_pred             --HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence              778888899999999999888753322    35678889999999999999999999999888888899999999999


Q ss_pred             hCChhHHHHHHHHHhhcCCCChH-----HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276          296 KCDYSKLSKLVHDLLSIDPSRPE-----VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       296 ~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  369 (514)
                      .|++++|++.+++++...|.+..     .+..+|.++.. |++++|+..++++++..|+...++..+|.++...|++++|
T Consensus       154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  233 (389)
T PRK11788        154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA  233 (389)
T ss_pred             hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999888776532     34566766665 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          370 VIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       370 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      +..+++++...|.+  ..+..++.+|...|++++|...++++++..|+... ...++.++... |++++|+..++++++.
T Consensus       234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~-g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQ-EGPEAAQALLREQLRR  311 (389)
T ss_pred             HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence            99999999988876  56788999999999999999999999999998654 48899999998 9999999999999999


Q ss_pred             CCCChHHHHHHHHHHHH--cCChhHHHHHHHHHHh
Q 010276          448 EPGYLGAALALAELHVI--EGRNGDAVSLLERYLK  480 (514)
Q Consensus       448 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~  480 (514)
                      .|++......++..+..  .|+.++|+..+++.++
T Consensus       312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            99887555444443322  4588898888887775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4e-27  Score=202.57  Aligned_cols=427  Identities=15%  Similarity=0.133  Sum_probs=316.0

Q ss_pred             HHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHH
Q 010276           46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK  125 (514)
Q Consensus        46 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  125 (514)
                      -..+|++++++.+|.+|+++|+.++..-|....-                          -...+...+|..+.+.|+|+
T Consensus       240 kmnigni~~kkr~fskaikfyrmaldqvpsink~--------------------------~rikil~nigvtfiq~gqy~  293 (840)
T KOG2003|consen  240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD--------------------------MRIKILNNIGVTFIQAGQYD  293 (840)
T ss_pred             eeeecceeeehhhHHHHHHHHHHHHhhccccchh--------------------------hHHHHHhhcCeeEEecccch
Confidence            3678999999999999999999999988754321                          11223334455555566666


Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--------------CCCHHHHHHHH-----Hhc-
Q 010276          126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--------------PFFIEAITALA-----ELG-  185 (514)
Q Consensus       126 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~-----~~~-  185 (514)
                      +|+..++.+.....+..+-+.+..|++..|+-++-.+.|++++..-              |++.-....+-     ... 
T Consensus       294 dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek  373 (840)
T KOG2003|consen  294 DAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK  373 (840)
T ss_pred             hhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence            6666555543333333344444555555566555555565555321              11111110000     000 


Q ss_pred             cCcccHhHHHhccCCcCCCCC-CCcCC---------------chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-
Q 010276          186 ATPKDIISLFAQTPNRSGRAP-FDHLD---------------SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-  248 (514)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-  248 (514)
                      ....+..+++..+.++...+. .+...               +.....-..++..+++.|+++.|++++.-.-+.+... 
T Consensus       374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~  453 (840)
T KOG2003|consen  374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA  453 (840)
T ss_pred             hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence            000111112111111111110 00000               1111112456778899999999999987765554433 


Q ss_pred             HHHHHHHHHHHHHh--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276          249 IHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL  326 (514)
Q Consensus       249 ~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  326 (514)
                      ..+-..+..+++.+  .++..|..+-..++.++..++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..
T Consensus       454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt  533 (840)
T KOG2003|consen  454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT  533 (840)
T ss_pred             HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc
Confidence            33445565566654  3788999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276          327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      +.. |+.++|+++|-+.-.+--++.++++.++.+|..+.+..+|++++.++..+-|++ ..+..++.+|-+.|+-.+|..
T Consensus       534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence            887 999999999999988888889999999999999999999999999999999998 678899999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      ++-......|-+.+..-.+|..|... .-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.+.|+..-...|.
T Consensus       614 ~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  614 CHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             hhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999998 88899999999999999998888888999999999999999999999999998


Q ss_pred             c-hHHHHHHHHHHHhc
Q 010276          485 D-SLHVKLAQVFAATN  499 (514)
Q Consensus       485 ~-~~~~~l~~~~~~~g  499 (514)
                      + +.+.-|..+.-.+|
T Consensus       693 dldclkflvri~~dlg  708 (840)
T KOG2003|consen  693 DLDCLKFLVRIAGDLG  708 (840)
T ss_pred             chHHHHHHHHHhcccc
Confidence            7 35555666655555

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.8e-26  Score=201.86  Aligned_cols=408  Identities=15%  Similarity=0.105  Sum_probs=283.9

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET  124 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  124 (514)
                      -....|+..+..|+|+.|+.+|..++.++|.+.-.+                               ....-+|..+|+|
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvly-------------------------------Snrsaa~a~~~~~   52 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLY-------------------------------SNRSAAYASLGSY   52 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchh-------------------------------cchHHHHHHHhhH
Confidence            356789999999999999999999999998654333                               3445667789999


Q ss_pred             HHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCC
Q 010276          125 KAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG  203 (514)
Q Consensus       125 ~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  203 (514)
                      ++|++.-.+ +...|.-+..|..+|..+.-.|+|++|+..|.+.++.+|++......+++.........+.+        
T Consensus        53 ~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~--------  124 (539)
T KOG0548|consen   53 EKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF--------  124 (539)
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc--------
Confidence            999988877 55669999999999999999999999999999999999999999999988762211110000        


Q ss_pred             CCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----------------------------------
Q 010276          204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----------------------------------  248 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------------------  248 (514)
                            ..|.-|...-...  ..+.-..+.+.......+..+|.+                                   
T Consensus       125 ------~~p~~~~~l~~~p--~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~  196 (539)
T KOG0548|consen  125 ------TKPYFHEKLANLP--LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS  196 (539)
T ss_pred             ------cCcHHHHHhhcCh--hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence                  0111111000000  000000000000111111111111                                   


Q ss_pred             ---------------------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          249 ---------------------------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       249 ---------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                                                 ..-...+|...+...+++.|++.+..++.++ .+...+...+.++...|.+.+
T Consensus       197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~  275 (539)
T KOG0548|consen  197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE  275 (539)
T ss_pred             CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence                                       1133456777777777777777777777777 666777777777777777777


Q ss_pred             HHHHHHHHhhcCCCChHHHHH-------HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276          302 LSKLVHDLLSIDPSRPEVFVA-------LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                      .+.....+++.......-+..       +|..+.. ++++.++.+|.+++.....        ..+.......++++...
T Consensus       276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~  347 (539)
T KOG0548|consen  276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEA  347 (539)
T ss_pred             hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHH
Confidence            777766666554433222222       2333333 6667777777776654433        44455555666666666


Q ss_pred             HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276          374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      +...-.+|.- ..-..-|..++..|+|..|+..|.+++..+|+++..+.++|.||..+ |.+..|+...+++++++|+..
T Consensus       348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~p~~~  426 (539)
T KOG0548|consen  348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL-GEYPEALKDAKKCIELDPNFI  426 (539)
T ss_pred             HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCchHH
Confidence            6665666665 34456699999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHH
Q 010276          453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYE  509 (514)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~  509 (514)
                      .+|..-|.++..+.+|++|.+.|+++++.+|++. +.-.+..|...+.......+.++
T Consensus       427 kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~  484 (539)
T KOG0548|consen  427 KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR  484 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence            9999999999999999999999999999999874 77777777775433333333333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.96  E-value=1.1e-25  Score=209.55  Aligned_cols=474  Identities=16%  Similarity=0.090  Sum_probs=347.8

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIA  115 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la  115 (514)
                      .+.....++..|+.++..|++++|...+.++++.+|.++.++..++.+|.+.|+.+++...+   ....|.+.+.|..++
T Consensus       135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            34557788999999999999999999999999999999999999999999999999988776   346788889999999


Q ss_pred             HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-HHHHHHH----HHhccCcc
Q 010276          116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF-IEAITAL----AELGATPK  189 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l----~~~~~~~~  189 (514)
                      .....+|++++|.-++.+ +...|.+....+..+.+|.+.|+...|...|.+++..+|.. .+-...+    +......+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999 45569999999999999999999999999999999999921 1111000    01110100


Q ss_pred             ------------------------------------cHhHHHhccCCcCC----------------------------CC
Q 010276          190 ------------------------------------DIISLFAQTPNRSG----------------------------RA  205 (514)
Q Consensus       190 ------------------------------------~~~~~~~~~~~~~~----------------------------~~  205 (514)
                                                          ....+.........                            ..
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence                                                00110000000000                            00


Q ss_pred             C------------------------------CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Q 010276          206 P------------------------------FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLE  254 (514)
Q Consensus       206 ~------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~  254 (514)
                      +                              ........+..++..+..+...|++.+|+.++..+....+. +..+|+.
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence            0                              11113344555566789999999999999999999887664 3679999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------------------
Q 010276          255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------------------  316 (514)
Q Consensus       255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------  316 (514)
                      +|.||..+|.+++|++.|++++...|++.++...++.++..+|+.++|.+.+.....-++.+                  
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d  534 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD  534 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988866433221                  


Q ss_pred             --------------------------------------------------------------------------------
Q 010276          317 --------------------------------------------------------------------------------  316 (514)
Q Consensus       317 --------------------------------------------------------------------------------  316 (514)
                                                                                                      
T Consensus       535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~  614 (895)
T KOG2076|consen  535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA  614 (895)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence                                                                                            


Q ss_pred             -------hHHHHHH----HHHHhh-cChhHHHHHHHHHHHhccc--Cc----hhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276          317 -------PEVFVAL----SVLWER-KDERGALSYAEKSIRIDER--HI----PGYIMKGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       317 -------~~~~~~l----~~~~~~-~~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                             .+-|+.+    ...+.. +.+.+|......++....-  ++    ..-+....+.+..+++..|..+++.++.
T Consensus       615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~  694 (895)
T KOG2076|consen  615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT  694 (895)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                   0111111    111111 4444444444444432111  01    1123344455677888999888887776


Q ss_pred             h-----cCCh-HHH-----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276          379 L-----RPDL-RSY-----------------------------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSA  417 (514)
Q Consensus       379 ~-----~~~~-~~~-----------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  417 (514)
                      .     +|.. ..|                                   ...|......+.+..|+..|-++...+|++|
T Consensus       695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P  774 (895)
T KOG2076|consen  695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP  774 (895)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence            5     3322 111                                   1224445566788999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-C--------ChHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-
Q 010276          418 KALKLVGDVHASNA-S--------GREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-  485 (514)
Q Consensus       418 ~~~~~l~~~~~~~~-~--------~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  485 (514)
                      -.-..+|..+..+. +        ..-+++.++.+..++...  ..++.+++|++|...|=..-|+.+|++++...|.+ 
T Consensus       775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~  854 (895)
T KOG2076|consen  775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV  854 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence            88888887766431 1        124556666665555433  67899999999999999999999999999997643 


Q ss_pred             ------------hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          486 ------------SLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       486 ------------~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                                  .+-+++..+|...|+...|.+++++-+
T Consensus       855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl  893 (895)
T KOG2076|consen  855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL  893 (895)
T ss_pred             ccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence                        588999999999999999999988755

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.96  E-value=1.7e-24  Score=194.21  Aligned_cols=444  Identities=15%  Similarity=0.114  Sum_probs=353.2

Q ss_pred             hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc-ccc--cCChhHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010276           58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-NVS--AINENEVKYKIASCHFALGETKAAIVEMEGI  134 (514)
Q Consensus        58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  134 (514)
                      +...=...+++|++..|++...|..-...    ...+.|.-.+ ...  -|.+.+.+    ..+.++.-|+.|...+.+.
T Consensus       361 ~~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNka  432 (913)
T KOG0495|consen  361 DTKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKA  432 (913)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            34444567888888888887766542211    0011110000 000  01122222    3344556688888888887


Q ss_pred             CCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276          135 PSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC-----PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD  208 (514)
Q Consensus       135 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (514)
                      ... |.++..|..-+.+-...|+.+...+...+.+..-     .-+.+.|..-+.-+...+.......-....++-....
T Consensus       433 Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe  512 (913)
T KOG0495|consen  433 REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE  512 (913)
T ss_pred             HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence            555 8889999999999999998888888887776321     1234455444443333333322211111111111111


Q ss_pred             cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                      ......|   ..-+..+...+-++-|+.+|..+++.+|....+|...+..-...|..++-...+++++..-|.....|.+
T Consensus       513 ed~~~tw---~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM  589 (913)
T KOG0495|consen  513 EDRKSTW---LDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLM  589 (913)
T ss_pred             chhHhHH---hhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHH
Confidence            1222333   4448889999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      .+..++..|+...|..++.++++.+|++.++|.....+... .+++.|..+|.++....|. ..+|+.-+.+...+++.+
T Consensus       590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence            99999999999999999999999999999999988887777 8899999999999988776 788999999999999999


Q ss_pred             HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      +|+.+++++++..|++ ..|..+|+++.+.++.+.|...|...++..|..+..|..++.+-... |....|...++++.-
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~-~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD-GQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh-cchhhHHHHHHHHHh
Confidence            9999999999999998 88999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------------------------------hHHHHHHHHH
Q 010276          447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------------------------------SLHVKLAQVF  495 (514)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~  495 (514)
                      .+|.+...|....++..+.|+.++|...+.++++..|++                               .++...|..+
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf  827 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF  827 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence            999999999999999999999999999999999988764                               3677789999


Q ss_pred             HHhccHHHHHHHHHHHhcC
Q 010276          496 AATNMLQEALSHYEAALRL  514 (514)
Q Consensus       496 ~~~g~~~~A~~~~~~al~l  514 (514)
                      ....++++|.++|.+++++
T Consensus       828 w~e~k~~kar~Wf~Ravk~  846 (913)
T KOG0495|consen  828 WSEKKIEKAREWFERAVKK  846 (913)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.96  E-value=5.5e-25  Score=219.82  Aligned_cols=391  Identities=12%  Similarity=0.014  Sum_probs=313.8

Q ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHh
Q 010276          106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAEL  184 (514)
Q Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~  184 (514)
                      .+..++..+...|.+.|++++|..+|+.++.  .+...|..+...|.+.|++++|+..|+++.+..+ .+...+..+...
T Consensus       156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a  233 (697)
T PLN03081        156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA  233 (697)
T ss_pred             cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence            3466777888999999999999999999854  4677899999999999999999999999987643 233344444444


Q ss_pred             ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Q 010276          185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK  264 (514)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  264 (514)
                      +...+................    ..+ +......+...|.+.|++++|..+|+++   .+.+...|..+...|.+.|+
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~g----~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~  305 (697)
T PLN03081        234 SAGLGSARAGQQLHCCVLKTG----VVG-DTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY  305 (697)
T ss_pred             HhcCCcHHHHHHHHHHHHHhC----CCc-cceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC
Confidence            444443322211110000000    001 1222334578899999999999999986   34577899999999999999


Q ss_pred             hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHH
Q 010276          265 NDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEK  341 (514)
Q Consensus       265 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~  341 (514)
                      +++|++.|++..+.. .-+...+..+...+.+.|++++|.+++..+++.. +.+..++..+...|.. |++++|...|++
T Consensus       306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~  385 (697)
T PLN03081        306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR  385 (697)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence            999999999987643 2245688889999999999999999999998875 5667778888888888 999999999998


Q ss_pred             HHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCH
Q 010276          342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSA  417 (514)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~  417 (514)
                      +.+   .+...|..+...|.+.|+.++|++.|+++.+.  .|+..++..+...+...|..++|..+|+.+.+..+  .+.
T Consensus       386 m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~  462 (697)
T PLN03081        386 MPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA  462 (697)
T ss_pred             CCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence            754   35778999999999999999999999998875  57778899999999999999999999999986432  235


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Q 010276          418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA  496 (514)
Q Consensus       418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~  496 (514)
                      ..+..+...+.+. |+.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.++..|++ ..|..++.+|.
T Consensus       463 ~~y~~li~~l~r~-G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        463 MHYACMIELLGRE-GLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             cchHhHHHHHHhc-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            6788899999998 9999999998864 33443 5689999999999999999999999999999986 48889999999


Q ss_pred             HhccHHHHHHHHHHHh
Q 010276          497 ATNMLQEALSHYEAAL  512 (514)
Q Consensus       497 ~~g~~~~A~~~~~~al  512 (514)
                      +.|++++|.+.++...
T Consensus       540 ~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        540 SSGRQAEAAKVVETLK  555 (697)
T ss_pred             hCCCHHHHHHHHHHHH
Confidence            9999999999998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.96  E-value=1.8e-25  Score=185.40  Aligned_cols=345  Identities=18%  Similarity=0.193  Sum_probs=263.2

Q ss_pred             CCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHH
Q 010276           36 ETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA  115 (514)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la  115 (514)
                      +...+..++-++.+|..++..|++..|+..|-.|++.+|                               ++..+.++.|
T Consensus        31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-------------------------------~~Y~aifrRa   79 (504)
T KOG0624|consen   31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-------------------------------NNYQAIFRRA   79 (504)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------------------------hhHHHHHHHH
Confidence            345667889999999999999999999999999999988                               5667888999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276          116 SCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL  194 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~  194 (514)
                      .+|+.+|+...|+..+.++.. .|+...+....|.+++++|++++|...|+.+++.+|.+.........+..        
T Consensus        80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~--------  151 (504)
T KOG0624|consen   80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL--------  151 (504)
T ss_pred             HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------
Confidence            999999999999999999644 48888899999999999999999999999999999965444332222110        


Q ss_pred             HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276          195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK  274 (514)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  274 (514)
                                       ......+......+...|++..|+.....+++..|-+...+...+.||...|++..|+..++.
T Consensus       152 -----------------~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~  214 (504)
T KOG0624|consen  152 -----------------IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ  214 (504)
T ss_pred             -----------------HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                             111122334466778889999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHH
Q 010276          275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYI  354 (514)
Q Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  354 (514)
                      +-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-..-.+   .+..+.+..                
T Consensus       215 askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl---kKv~K~les----------------  275 (504)
T KOG0624|consen  215 ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL---KKVVKSLES----------------  275 (504)
T ss_pred             HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH---HHHHHHHHH----------------
Confidence            9999999999999999999999999999999999999999986543321111   111111111                


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                        +.-....++|.++++..++.++.+|..     .....+..|+..-|++.+|+..+.+++..+|++..++...+..|..
T Consensus       276 --~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  276 --AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             --HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence              122344566666666666666666652     2344455666666667777777777777777777777777776666


Q ss_pred             cCCChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276          430 NASGREKAKKFYESALRLEPGYLGAALAL  458 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  458 (514)
                      . ..|+.|+..|+++.+.++++..+.-.+
T Consensus       354 d-E~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  354 D-EMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             h-HHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            5 666777777777777666665554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-24  Score=191.43  Aligned_cols=460  Identities=14%  Similarity=0.084  Sum_probs=336.2

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHH------HhhcccCc
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQA------LQYYKIVP   77 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p~~~   77 (514)
                      ++-+++.+.-.|.|..|.-+...-.         -........++.+.++.+.+++++|...+.++      +..+|.+.
T Consensus        52 ~~~~aq~l~~~~~y~ra~~lit~~~---------le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~  122 (611)
T KOG1173|consen   52 IYWLAQVLYLGRQYERAAHLITTYK---------LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA  122 (611)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence            4456677778888888766554221         12344557788999999999999999998855      11111110


Q ss_pred             hhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCC
Q 010276           78 KQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRH  156 (514)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~  156 (514)
                             ...+   ....+.+  .....-...+.+..|.+|....+.++|...+.. +..+....++...+-....-.. 
T Consensus       123 -------~~~l---~~n~~~~--~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~-  189 (611)
T KOG1173|consen  123 -------ANTL---ELNSAGE--DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA-  189 (611)
T ss_pred             -------hcee---ccCcccc--cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch-
Confidence                   0000   0000000  001112345667788999999999999988887 3444555555544433332221 


Q ss_pred             hhhHHHHHHHHHh-----cCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCH
Q 010276          157 NRGAVACYKECLR-----HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY  231 (514)
Q Consensus       157 ~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (514)
                          .+.+.....     ....+.+....+..+......-.........     ........+.......+..++..+++
T Consensus       190 ----~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~-----~sl~~l~~~~dll~~~ad~~y~~c~f  260 (611)
T KOG1173|consen  190 ----QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNED-----ESLIGLAENLDLLAEKADRLYYGCRF  260 (611)
T ss_pred             ----hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCch-----hhhhhhhhcHHHHHHHHHHHHHcChH
Confidence                111111111     1111112222221111000000000000000     00011122233344568899999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS  311 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  311 (514)
                      .+..++++.+++.+|-++.++-...-++...|+..+-...-.+.++..|+.+..|+..|..|...|++.+|.++|.++..
T Consensus       261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~  340 (611)
T KOG1173|consen  261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT  340 (611)
T ss_pred             HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence            99999999999999988777665555999999999988888999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276          312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL  389 (514)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l  389 (514)
                      ++|....+|...|..+.. +..++|+..|..|-+..|..-.....+|.-|...++++-|...|.+++.+.|.+ -....+
T Consensus       341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El  420 (611)
T KOG1173|consen  341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL  420 (611)
T ss_pred             cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence            999999999999999888 999999999999999999988888999999999999999999999999999999 578899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAM----P---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~----p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      |.+.+..+.|.+|..+|+.++..-    +   .-...+.++|.++.+. +.+++|+.+|++++.+.|.++.++..+|.+|
T Consensus       421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl-~~~~eAI~~~q~aL~l~~k~~~~~asig~iy  499 (611)
T KOG1173|consen  421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL-NKYEEAIDYYQKALLLSPKDASTHASIGYIY  499 (611)
T ss_pred             hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH-hhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence            999999999999999999998432    2   2345689999999999 9999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276          463 VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF  495 (514)
Q Consensus       463 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~  495 (514)
                      ..+|+++.|++.|.+++-+.|++. +-..|+.+.
T Consensus       500 ~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  500 HLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999999999999999999999985 444444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.95  E-value=6.7e-23  Score=206.67  Aligned_cols=424  Identities=10%  Similarity=0.027  Sum_probs=265.0

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhh--hhhhhhhhhccccCCCCcccccccCChhHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN--STSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS  116 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~  116 (514)
                      .......+..+-..+.+.|++++|++.|+++...+.-.+...  ..+...+...|....|...+......+...+..+-.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            334445566666777789999999999999876543222111  112222233333333333332111123333344444


Q ss_pred             HHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHhccCcccHhH
Q 010276          117 CHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPKDIIS  193 (514)
Q Consensus       117 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~  193 (514)
                      .+.+.|++++|..+++.+...  ..+...+..+...|.+.|+.++|..+|+++.+... .+...|.              
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn--------------  511 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG--------------  511 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Confidence            444455555555554443222  23444444444455555555555555554443321 1222222              


Q ss_pred             HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhCChHHHHHHH
Q 010276          194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNF  272 (514)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~  272 (514)
                                                .+...|.+.|++++|..+|+.+.... ..+...+..+...+.+.|++++|.+.|
T Consensus       512 --------------------------aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf  565 (1060)
T PLN03218        512 --------------------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL  565 (1060)
T ss_pred             --------------------------HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                      22666778888888888888876532 124567778888888888888888888


Q ss_pred             HHHHhh----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-
Q 010276          273 EKVRSI----DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRI-  345 (514)
Q Consensus       273 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-  345 (514)
                      .++...    .| +...+..+...|.+.|++++|.++|+.+.+.. +.++..|..+...|.. |++++|...|+++... 
T Consensus       566 ~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G  644 (1060)
T PLN03218        566 AEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG  644 (1060)
T ss_pred             HHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            887652    33 34567777778888888888888888887765 4456677777766666 8888888888887765 


Q ss_pred             -cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHH
Q 010276          346 -DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKAL  420 (514)
Q Consensus       346 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~  420 (514)
                       .|+ ...+..+...+.+.|++++|...++.+.+..  |+...|..+...|.+.|++++|..+|+++...  .| +...|
T Consensus       645 v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvty  722 (1060)
T PLN03218        645 VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTM  722 (1060)
T ss_pred             CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHH
Confidence             343 5567777788888888888888888877653  45577888888888888888888888877653  34 36677


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--CCchHHHHHHHHHH
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW--ADDSLHVKLAQVFA  496 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~  496 (514)
                      ..+...|.+. |++++|.+.|++....  .|+ ...+..+...+.+.|++++|..++..+.+..  |+...+..+..++.
T Consensus       723 N~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        723 NALITALCEG-NQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             HHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            7888888877 8888888888876653  343 4566677778888888888888888887754  33334444432222


Q ss_pred             HhccHHHHHHHHH
Q 010276          497 ATNMLQEALSHYE  509 (514)
Q Consensus       497 ~~g~~~~A~~~~~  509 (514)
                        +++++|....+
T Consensus       801 --~~y~ka~~l~~  811 (1060)
T PLN03218        801 --RRFEKACALGE  811 (1060)
T ss_pred             --HHHHHHhhhhh
Confidence              34555554443

>PLN03077 Protein ECB2; Provisional

Probab=99.95  E-value=2.2e-24  Score=220.84  Aligned_cols=475  Identities=12%  Similarity=0.006  Sum_probs=354.3

Q ss_pred             HHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhh
Q 010276            8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSR   85 (514)
Q Consensus         8 ~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~   85 (514)
                      +..+.+.|+++.|..+.+.+.           ..+..+|..+...|.+.|++++|+..|+++...  .|+...+... ..
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~-----------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l-l~  296 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMP-----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV-IS  296 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC-----------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH-HH
Confidence            445556666666665544321           123347888889999999999999999998765  5654444333 33


Q ss_pred             hhhhccccCCCCcccc----cccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHH
Q 010276           86 SSLSTSNRSSSPNSFN----VSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAV  161 (514)
Q Consensus        86 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  161 (514)
                      .+...|+.+.+.+.+.    .....+..++..+...|.+.|++++|..+|+.+..  .+...|..+...|.+.|++++|+
T Consensus       297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~  374 (857)
T PLN03077        297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKAL  374 (857)
T ss_pred             HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHH
Confidence            4445566666665552    12334677888999999999999999999999853  46678999999999999999999


Q ss_pred             HHHHHHHhc--CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276          162 ACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA  239 (514)
Q Consensus       162 ~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  239 (514)
                      ..|+++.+.  .|+.......+ ..+...++...+.+..........     .........+...|.+.|++++|.++|+
T Consensus       375 ~lf~~M~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~l~~~~~~~g~-----~~~~~~~n~Li~~y~k~g~~~~A~~vf~  448 (857)
T PLN03077        375 ETYALMEQDNVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGL-----ISYVVVANALIEMYSKCKCIDKALEVFH  448 (857)
T ss_pred             HHHHHHHHhCCCCCceeHHHHH-HHHhccchHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999988654  36554433333 333444444333222221111110     1112233345677888888899988888


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC-CChH
Q 010276          240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPE  318 (514)
Q Consensus       240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  318 (514)
                      ++.+   .+...|..+...|...|+.++|+..|+++....+.+...+..+...+...|..+.+.+++..+++... .+..
T Consensus       449 ~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~  525 (857)
T PLN03077        449 NIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF  525 (857)
T ss_pred             hCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence            7643   34567888888888888888898888888765455556677777778888888888888888776432 2334


Q ss_pred             HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHh
Q 010276          319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQ  395 (514)
Q Consensus       319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~  395 (514)
                      ....+...|.. |+.++|...|+..    +.+...|..+...|...|+.++|+..|+++.+.  .|+..++..+...+.+
T Consensus       526 ~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~  601 (857)
T PLN03077        526 LPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR  601 (857)
T ss_pred             echHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence            44556666666 9999999999886    556889999999999999999999999998874  5777888888899999


Q ss_pred             cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276          396 FSKVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       396 ~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (514)
                      .|++++|..+|+.+.+..+  .+...+..+...+.+. |++++|.+.+++. ...|+ +.+|..|...+...|+.+.+..
T Consensus       602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~  678 (857)
T PLN03077        602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGEL  678 (857)
T ss_pred             cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Confidence            9999999999999985432  2367889999999998 9999999999885 45665 6788888888999999999999


Q ss_pred             HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          474 LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       474 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      ..++++++.|++. .+..++.+|...|++++|.+..+..-
T Consensus       679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            9999999999885 88888999999999999999887653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.95  E-value=3.6e-23  Score=202.98  Aligned_cols=454  Identities=11%  Similarity=0.009  Sum_probs=295.2

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      +.++++-...++|+++.|......++...+.++.        ....+..++...|++++|+.++++++  +|.+......
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~--------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~l  105 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG--------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGL  105 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh--------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHH
Confidence            3466777888999999999988887764332211        12256666777799999999999999  5555544444


Q ss_pred             h--hhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCC
Q 010276           83 S--SRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRH  156 (514)
Q Consensus        83 ~--~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~  156 (514)
                      +  +.++...|++.+|.+.+   ....|++++++..++..+...++.++|+..++++... |.... +..++.++...++
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~  184 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcch
Confidence            4  77888889999888888   2366778888888899999999999999999996544 55333 3556666666777


Q ss_pred             hhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch-hHHhHHHHHHHHHHhcCHHHHH
Q 010276          157 NRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS-RWLHRYVEAQCCIASNDYKGGL  235 (514)
Q Consensus       157 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~  235 (514)
                      ..+|+..|+++++.+|++...+..+.......+-...+.+.+.....-.    ...+ .++.. ..+....+.+      
T Consensus       185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f----~~~~~~~l~~-~~~a~~vr~a------  253 (822)
T PRK14574        185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV----SAEHYRQLER-DAAAEQVRMA------  253 (822)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc----CHHHHHHHHH-HHHHHHHhhc------
Confidence            7779999999999999999988777555444443333332222211000    0010 01111 1111111000      


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276          236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID---PYI----MTYMDEYAMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       236 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~  308 (514)
                            ..  |...+        -.+---.+.|+..++..+...   |..    ..+....-.++...|++.++++.|+.
T Consensus       254 ------~~--~~~~~--------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~  317 (822)
T PRK14574        254 ------VL--PTRSE--------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA  317 (822)
T ss_pred             ------cc--ccccc--------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                  00  00000        000001233444445544422   221    12233344455556666666666665


Q ss_pred             HhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276          309 LLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       309 ~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  380 (514)
                      +.... |-.+.+....|..|.. +++++|+.+|.+++...|.      .......+...+...+++++|..++++..+..
T Consensus       318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~  397 (822)
T PRK14574        318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT  397 (822)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            55433 2233344455555555 6666666666666554321      11223455666667777777777777766543


Q ss_pred             C---------------Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          381 P---------------DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       381 ~---------------~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      |               +. .....++.++...|++.+|.+.+++.+...|.++.++..+|.++... |.+.+|...++.+
T Consensus       398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a  476 (822)
T PRK14574        398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAV  476 (822)
T ss_pred             CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence            3               22 34667788889999999999999999999999999999999999998 9999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276          445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF  495 (514)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  495 (514)
                      ..++|++..+...++.++..+|++++|.....++++..|++.....+...+
T Consensus       477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r~~  527 (822)
T PRK14574        477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDRQR  527 (822)
T ss_pred             hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHHHH
Confidence            999999999999999999999999999999999999999886555555544

>PLN03077 Protein ECB2; Provisional

Probab=99.95  E-value=8.6e-24  Score=216.46  Aligned_cols=448  Identities=11%  Similarity=0.042  Sum_probs=219.7

Q ss_pred             hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhhhhhhccccCCCCccc----ccccCChhHHHHHHH
Q 010276           42 KAENLIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSRSSLSTSNRSSSPNSF----NVSAINENEVKYKIA  115 (514)
Q Consensus        42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~la  115 (514)
                      +..+|..+...+.+.|++++|+..|+++...  .|+...+...+ ..+...++...+.+.+    ......+..+...+.
T Consensus       151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li  229 (857)
T PLN03077        151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI  229 (857)
T ss_pred             CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH-HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence            4557888899999999999999999998753  45544443332 2222333333333332    112223455666777


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHH-----------------
Q 010276          116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIE-----------------  176 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~-----------------  176 (514)
                      ..|.+.|++++|..+|+.++.  .+...|..+...|.+.|++++|+..|.++...  .|+...                 
T Consensus       230 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a  307 (857)
T PLN03077        230 TMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG  307 (857)
T ss_pred             HHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence            888888888888888888743  35567777888888888888888888887654  344322                 


Q ss_pred             -----------------HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276          177 -----------------AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA  239 (514)
Q Consensus       177 -----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  239 (514)
                                       .+..+...+...++...+.........      .+...|   ......+.+.|++++|+.+|+
T Consensus       308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~~s~---n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KDAVSW---TAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCeeeH---HHHHHHHHhCCCHHHHHHHHH
Confidence                             222333333333333322222222110      011111   222344444455555555554


Q ss_pred             HHHHh--CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276          240 ELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR  316 (514)
Q Consensus       240 ~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  316 (514)
                      ++...  .|+. ..+..+-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.++|+++.+   .+
T Consensus       379 ~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d  454 (857)
T PLN03077        379 LMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KD  454 (857)
T ss_pred             HHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CC
Confidence            44332  1222 2222222333344444444444444433321 1233444455555555555555555554432   22


Q ss_pred             hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH-----------------------------------HHHHHHH
Q 010276          317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY-----------------------------------IMKGNLL  360 (514)
Q Consensus       317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~  360 (514)
                      ...|..+...+.. |+.++|+..|+++....+.+...+                                   ..+...|
T Consensus       455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y  534 (857)
T PLN03077        455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY  534 (857)
T ss_pred             eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence            3344444444444 555555555555543211111111                                   2233444


Q ss_pred             HhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276          361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       361 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      .+.|+.++|...|+..   .|+..+|..+...|...|+.++|+..|+++.+.  .|+ ...+..+-..+... |..++|.
T Consensus       535 ~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~-g~v~ea~  609 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS-GMVTQGL  609 (857)
T ss_pred             HHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc-ChHHHHH
Confidence            4455555555555443   333344555555555555555555555555442  233 22233333334444 5555555


Q ss_pred             HHHHHHHhh---CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          439 KFYESALRL---EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       439 ~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      .+|+...+.   .|+ ...+..+..++.+.|++++|.+.++++ ...|+..+|..+-..+...|+.+.+....++.+
T Consensus       610 ~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~  684 (857)
T PLN03077        610 EYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIF  684 (857)
T ss_pred             HHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            555554422   222 234455555555555555555555543 234444445544444444555555554444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.95  E-value=1.3e-23  Score=195.89  Aligned_cols=357  Identities=17%  Similarity=0.157  Sum_probs=289.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc
Q 010276          108 NEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA  186 (514)
Q Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  186 (514)
                      ....+..|...+..|++++|..++..+ ...|.++.+|+.+|.+|.++|+.+++...+-.+-.++|.+.+.|..+     
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l-----  213 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL-----  213 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence            556677788889999999999999995 55599999999999999999999999999999999999999999877     


Q ss_pred             CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276          187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND  266 (514)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  266 (514)
                                                         +....+.|++.+|.-+|.++++.+|.+....+..+.+|.++|+..
T Consensus       214 -----------------------------------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~  258 (895)
T KOG2076|consen  214 -----------------------------------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK  258 (895)
T ss_pred             -----------------------------------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence                                               666778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC--CChHHHHHHHHHHhh-cChhHHHHH
Q 010276          267 EAILNFEKVRSIDPYI-----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSY  338 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~  338 (514)
                      .|...|.+++...|..     .......+..+...++-+.|++.++.++....  ...+.+..++.++.. ..++.+...
T Consensus       259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~  338 (895)
T KOG2076|consen  259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK  338 (895)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence            9999999999999832     22334457777888888999999999988322  223344455555555 777777766


Q ss_pred             HHHHHHh--ccc--------------------------Cchh-HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHH
Q 010276          339 AEKSIRI--DER--------------------------HIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQ  387 (514)
Q Consensus       339 ~~~~~~~--~~~--------------------------~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~  387 (514)
                      .......  .++                          +..+ ...++.+..+.++..+++..+..--...|..  ..+.
T Consensus       339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~  418 (895)
T KOG2076|consen  339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL  418 (895)
T ss_pred             HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence            6554431  000                          1122 4455555566666666666665544444655  6789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      .++.++...|++.+|+.++..+....+. +..+|+.+|.||..+ |.+++|+.+|++++...|++.++...|+.++.++|
T Consensus       419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g  497 (895)
T KOG2076|consen  419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG  497 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence            9999999999999999999999987654 477999999999999 99999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhhCCCc----------hHHHHHHHHHHHhccHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADD----------SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~  505 (514)
                      +.++|.+.++....-++.+          .+......++.+.|+.++=+
T Consensus       498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi  546 (895)
T KOG2076|consen  498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI  546 (895)
T ss_pred             CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999876333211          47788899999999988743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.95  E-value=7e-23  Score=184.03  Aligned_cols=377  Identities=13%  Similarity=0.082  Sum_probs=326.0

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      .......|..-++.+.+.+-++-|...|..+++.+|                               ....++.+.+..-
T Consensus       512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-------------------------------~k~slWlra~~~e  560 (913)
T KOG0495|consen  512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-------------------------------CKKSLWLRAAMFE  560 (913)
T ss_pred             cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-------------------------------chhHHHHHHHHHH
Confidence            345566888889999999999999999999999987                               4445666666666


Q ss_pred             HhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhc
Q 010276          119 FALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ  197 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  197 (514)
                      -..|..++-..+|++.. ..|.....|++.+..+...|+...|...+.++++.+|++.++|..-                
T Consensus       561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa----------------  624 (913)
T KOG0495|consen  561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA----------------  624 (913)
T ss_pred             HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH----------------
Confidence            67888888888888854 4488899999999999999999999999999999999999998654                


Q ss_pred             cCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276          198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS  277 (514)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  277 (514)
                                              ..+.+...+++.|..+|.++....|. ..+|+.-+.+...+++.++|+..++++++
T Consensus       625 ------------------------vKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk  679 (913)
T KOG0495|consen  625 ------------------------VKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALK  679 (913)
T ss_pred             ------------------------HHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence                                    45556778899999999999887664 48888889999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276          278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK  356 (514)
Q Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      ..|.....|..+|.++.+.++.+.|...|...+...|..+..|..++.+-.. |..-.|...++++.-.+|++...|...
T Consensus       680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~  759 (913)
T KOG0495|consen  680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES  759 (913)
T ss_pred             hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence            9999999999999999999999999999999999999999999999998888 889999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE  435 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  435 (514)
                      ..+-.+.|+.+.|.....++++..|++ ..|..-..+.-.-++-..    ...+++....++.++...|..+... .+++
T Consensus       760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk----s~DALkkce~dphVllaia~lfw~e-~k~~  834 (913)
T KOG0495|consen  760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK----SIDALKKCEHDPHVLLAIAKLFWSE-KKIE  834 (913)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH----HHHHHHhccCCchhHHHHHHHHHHH-HHHH
Confidence            999999999999999999999999998 455554444444444333    3445566678899999999999988 9999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHH
Q 010276          436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLA  492 (514)
Q Consensus       436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~  492 (514)
                      +|.+.|.++++.+|++.++|..+-..+...|.-++-.+++.++....|... .|....
T Consensus       835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS  892 (913)
T KOG0495|consen  835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS  892 (913)
T ss_pred             HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence            999999999999999999999999999999999999999999999999873 554443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.95  E-value=2.6e-23  Score=207.88  Aligned_cols=424  Identities=12%  Similarity=0.009  Sum_probs=335.9

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET  124 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  124 (514)
                      .|..+...+.+.|++++|++.|+.+....|..                             .+...+..+..++.+.+++
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-----------------------------~~~~t~~~ll~a~~~~~~~  139 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFT-----------------------------LPASTYDALVEACIALKSI  139 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----------------------------CCHHHHHHHHHHHHhCCCH
Confidence            56777788889999999999999877543311                             2344566677788889999


Q ss_pred             HHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276          125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS  202 (514)
Q Consensus       125 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  202 (514)
                      +.|..++..+...  ..+...+..+...|.+.|++++|.+.|+++.+  | +...|..+...+...++..+++.......
T Consensus       140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~  216 (697)
T PLN03081        140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMW  216 (697)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            9999988876332  45788889999999999999999999999864  3 45566677666666676666555444433


Q ss_pred             CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276          203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY  281 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  281 (514)
                      ....    .+ +...+......+...|....+.+++..+.+.. ..+..++..+...|.+.|+.++|.+.|++..   +.
T Consensus       217 ~~g~----~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~  288 (697)
T PLN03081        217 EDGS----DA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK  288 (697)
T ss_pred             HhCC----CC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC
Confidence            2211    11 11222333556677889999999888877643 3356788889999999999999999999864   45


Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGN  358 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  358 (514)
                      +..+|..+...|.+.|++++|..+|+++.... ..+...+..+...+.. |++++|...+..+++.. +.+..++..+..
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            77899999999999999999999999997643 3345566666666666 99999999999999875 556788999999


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREK  436 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~  436 (514)
                      .|.+.|++++|...|+++.+  |+..+|..+...|.+.|+.++|++.|+++...  .|+ ...+..+...+... |..++
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~-g~~~~  444 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYS-GLSEQ  444 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcC-CcHHH
Confidence            99999999999999998854  66688999999999999999999999999874  354 66677777888887 99999


Q ss_pred             HHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          437 AKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       437 A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      |..+|+...+..+-  +...+..+..++.+.|++++|.+.++++ ...|+..+|..+...+...|+.+.|...+++.++
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            99999998864322  2457888999999999999999999874 3556777999999999999999999999988765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=7.5e-23  Score=187.62  Aligned_cols=413  Identities=19%  Similarity=0.121  Sum_probs=321.4

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      ..+..|-.+.-.+...|+|..+.+.|++++...                               ....+.++.++.++..
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------------------~~~~e~w~~~als~sa  369 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------------------FGEHERWYQLALSYSA  369 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------------------hhhHHHHHHHHHHHHH
Confidence            345566667777788899999999999887652                               3667889999999999


Q ss_pred             cCCHHHHHHHHhc-CCCC--CccHHHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCC-----CHHHHHHHHHhccCcccH
Q 010276          121 LGETKAAIVEMEG-IPSK--ARNLQMSLLMAKL-YRNSRHNRGAVACYKECLRHCPF-----FIEAITALAELGATPKDI  191 (514)
Q Consensus       121 ~g~~~~A~~~~~~-~~~~--~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~  191 (514)
                      .|.-..|+.+++. +...  |.++..+...+.+ ..+.|..++++.+-.+++...-.     .+.++..++-.+....  
T Consensus       370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--  447 (799)
T KOG4162|consen  370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--  447 (799)
T ss_pred             hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--
Confidence            9999999999988 4444  6677777666654 55678899999999999874311     1112222211110000  


Q ss_pred             hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHH
Q 010276          192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN  271 (514)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  271 (514)
                                        .....+         -.+.....++++.++++++.+|+|+.+.+.++.-|...++.+.|...
T Consensus       448 ------------------~~a~~~---------seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~  500 (799)
T KOG4162|consen  448 ------------------RQANLK---------SERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDY  500 (799)
T ss_pred             ------------------hcCCCh---------HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHH
Confidence                              000000         01223356889999999999999999999999999999999999999


Q ss_pred             HHHHHhh-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276          272 FEKVRSI-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       272 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~  349 (514)
                      .+++++. ..+++.+|..++.++...+++.+|+.+.+.++...|+|.........+-.. ++.++++..+...+......
T Consensus       501 ~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~  580 (799)
T KOG4162|consen  501 AREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE  580 (799)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence            9999999 456689999999999999999999999999999999876655554444444 88889998888877765432


Q ss_pred             chh---------HHHHHHHHHhcCChHHHHHHHHHhHhh---------------------cCCh------HHHHHHHHHH
Q 010276          350 IPG---------YIMKGNLLLSMKRPEAAVIAFRGAQEL---------------------RPDL------RSYQGLVHSY  393 (514)
Q Consensus       350 ~~~---------~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~------~~~~~l~~~~  393 (514)
                      +.+         ....+......++..+|+..++++...                     .|+.      ..|...+..+
T Consensus       581 ~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~  660 (799)
T KOG4162|consen  581 YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLF  660 (799)
T ss_pred             hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHH
Confidence            222         222333334444556666555554332                     1111      2477889999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (514)
                      ...++.++|..++.++-.++|..+..++..|.++... |..++|...|..++.++|+++.+...+|.++.+.|+..-|..
T Consensus       661 ~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  661 LLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             HhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            9999999999999999999999999999999999998 999999999999999999999999999999999999888888


Q ss_pred             --HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          474 --LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       474 --~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                        .+..+++++|.+. +|+.+|.++.+.|+.++|.++|..|++|
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence              9999999999985 9999999999999999999999999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=2.7e-24  Score=178.45  Aligned_cols=303  Identities=17%  Similarity=0.198  Sum_probs=265.6

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      ++.+....+.+|..++..|++.+|+..|..+++.+|++-.+++..|.+|..+|+..-|+..+.+++++.|+...+....|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            34555566777999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHH-------------HHhhcChhHHHHHHHHHHHhcccCchhHH
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSV-------------LWERKDERGALSYAEKSIRIDERHIPGYI  354 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~-------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  354 (514)
                      .++.++|.+++|..-|+.++..+|++.   ++...++.             .+..|+...++.+....+++.|-+...+.
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence            999999999999999999999999653   22222211             12228999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV----------  423 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l----------  423 (514)
                      .++.+|...|++..|+..++.+-++..++ +.++.++.+++..|+.+.++...+++++++|++...+-..          
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888 8999999999999999999999999999999975443211          


Q ss_pred             --HHHHHhcCCChHHHHHHHHHHHhhCCCChHH----HHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Q 010276          424 --GDVHASNASGREKAKKFYESALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA  496 (514)
Q Consensus       424 --~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~  496 (514)
                        +.-.... ++|.++++..++.++.+|..+.+    ...+..|+..-|++.+|+....++++..|++ .++...+..|.
T Consensus       274 es~e~~ie~-~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  274 ESAEQAIEE-KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHHhh-hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence              1223344 88999999999999999986554    3447788889999999999999999999997 59999999999


Q ss_pred             HhccHHHHHHHHHHHhcC
Q 010276          497 ATNMLQEALSHYEAALRL  514 (514)
Q Consensus       497 ~~g~~~~A~~~~~~al~l  514 (514)
                      ....|++|+..|++|.++
T Consensus       353 ~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             hhHHHHHHHHHHHHHHhc
Confidence            999999999999999763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=185.09  Aligned_cols=441  Identities=15%  Similarity=0.142  Sum_probs=340.0

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      .....+++.++.-|-...-+.+|+..|+-.++..                             ..|+...+...+|.+++
T Consensus       198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknk-----------------------------mf~nag~lkmnigni~~  248 (840)
T KOG2003|consen  198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNK-----------------------------MFPNAGILKMNIGNIHF  248 (840)
T ss_pred             cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhccc-----------------------------ccCCCceeeeeecceee
Confidence            4456688889999888888999999888776541                             12244555667888888


Q ss_pred             hcCCHHHHHHHHhc----CCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCccc---
Q 010276          120 ALGETKAAIVEMEG----IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD---  190 (514)
Q Consensus       120 ~~g~~~~A~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---  190 (514)
                      +..+|.+|+..++-    ++..  ......+..+|..+.+.|+|++|+..|+.+++..|+...++. |.-++...++   
T Consensus       249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ek  327 (840)
T KOG2003|consen  249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEK  327 (840)
T ss_pred             ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHH
Confidence            99999999998775    3333  234566788899999999999999999999999997666553 4455555554   


Q ss_pred             HhHHHhccCCcCCCCCCC-----cCCchhHHh-HHHHHHHH--HHhcCHHHHHHHHHHHHH-----hCCCc---------
Q 010276          191 IISLFAQTPNRSGRAPFD-----HLDSSRWLH-RYVEAQCC--IASNDYKGGLELFAELLQ-----RFPNN---------  248 (514)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~a~~~--~~~~~~~~A~~~~~~~~~-----~~p~~---------  248 (514)
                      ..+++.++.........+     ..+|...+. .-.....+  +...+-..|......+.+     ..|+.         
T Consensus       328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle  407 (840)
T KOG2003|consen  328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE  407 (840)
T ss_pred             HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence            456666666655443321     223322211 11111111  112222233333222222     12221         


Q ss_pred             -----------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHh--CChhHHHHHHHHHhhcCC
Q 010276          249 -----------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVK--CDYSKLSKLVHDLLSIDP  314 (514)
Q Consensus       249 -----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~  314 (514)
                                 .++-...+-.+++.|+++.|++.++-.-+.+.... .+-.++..+++.+  .++..|..+...++..+.
T Consensus       408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr  487 (840)
T KOG2003|consen  408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR  487 (840)
T ss_pred             HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc
Confidence                       12334557778899999999999887666554432 3445565555553  478899999999999999


Q ss_pred             CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276          315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS  392 (514)
Q Consensus       315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~  392 (514)
                      .++.+..+.|++... |++++|.+.|..++..+....++++++|..+..+|+.++|+.+|-+...+--++ .++..++.+
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999986555 999999999999999999999999999999999999999999999988776666 889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      |....+..+|++++-++..+-|++|.++..+|.+|-+. |+..+|..++-...+..|.+.+..-.||..|....-+++|+
T Consensus       568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai  646 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI  646 (840)
T ss_pred             HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          473 SLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       473 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      .+|+++.-+.|+.. ....++.|+.+.|++.+|.+.|+..
T Consensus       647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999999876 5556799999999999999999864

>TIGR00540 hemY_coli hemY protein

Probab=99.94  E-value=2.6e-23  Score=193.54  Aligned_cols=294  Identities=14%  Similarity=0.059  Sum_probs=251.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC  297 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  297 (514)
                      ...|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~  167 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN  167 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence            45688999999999999999999999998888888889999999999999999999999989885 56666799999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH----HHHHHHHhcCChHHHHHH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----MKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~  372 (514)
                      +++.|...++.+.+..|+++.++..++.++.. |++++|.+.+.+..+..+.++....    ....-....+..+++...
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999999999999999999999999988 9999999999999987544333221    222222344455556668


Q ss_pred             HHHhHhhcCC----h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          373 FRGAQELRPD----L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL--KLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       373 ~~~~~~~~~~----~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +.++....|.    + ..+..++..+...|++++|...++++++..|++....  .......... ++.+.+++.+++++
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~l  326 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHH
Confidence            8888877773    3 7789999999999999999999999999999987532  2233333444 78899999999999


Q ss_pred             hhCCCCh--HHHHHHHHHHHHcCChhHHHHHHH--HHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          446 RLEPGYL--GAALALAELHVIEGRNGDAVSLLE--RYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       446 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +..|+++  .....+|+++.+.|++++|.++|+  .+++..|++..+..+|.++.+.|+.++|.++|++++.
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999  889999999999999999999999  6888899998888999999999999999999999875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.94  E-value=6.4e-21  Score=192.48  Aligned_cols=447  Identities=12%  Similarity=0.054  Sum_probs=340.0

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      .+.....+.+.|++..|..+.+.+..    .+..+  ...-.+..+-..+.+.|..++|...|+....  |+ ...+..+
T Consensus       373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~----~gvv~--~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~L  443 (1060)
T PLN03218        373 YIDAYNRLLRDGRIKDCIDLLEDMEK----RGLLD--MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-LSTFNML  443 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHh----CCCCC--chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHH
Confidence            34556677788899988887775543    11111  1222333445667788999999999987764  53 3444556


Q ss_pred             hhhhhhccccCCCCccccc----ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCCh
Q 010276           84 SRSSLSTSNRSSSPNSFNV----SAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHN  157 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~  157 (514)
                      ...+...|+.+.|...+..    .-..+..++..+...+.+.|+.++|..+++.+...  ..+...|..+...|.+.|++
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            6667788888888887732    22346778889999999999999999999997543  45888999999999999999


Q ss_pred             hhHHHHHHHHHhcC--CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH
Q 010276          158 RGAVACYKECLRHC--PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL  235 (514)
Q Consensus       158 ~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  235 (514)
                      ++|+..|+++....  |+ ...+..+                                        ...+.+.|++++|.
T Consensus       524 eeAl~lf~~M~~~Gv~PD-~vTYnsL----------------------------------------I~a~~k~G~~deA~  562 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPD-RVVFNAL----------------------------------------ISACGQSGAVDRAF  562 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCC-HHHHHHH----------------------------------------HHHHHHCCCHHHHH
Confidence            99999999987543  43 3334333                                        77788999999999


Q ss_pred             HHHHHHHHh----CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276          236 ELFAELLQR----FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL  310 (514)
Q Consensus       236 ~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  310 (514)
                      ++++++...    .| +...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.
T Consensus       563 ~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        563 DVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999763    34 45788889999999999999999999999876 4567899999999999999999999999998


Q ss_pred             hcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHH
Q 010276          311 SID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRS  385 (514)
Q Consensus       311 ~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~  385 (514)
                      ... ..+...+..+...+.. |++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++...  .|+...
T Consensus       642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt  721 (1060)
T PLN03218        642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST  721 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            752 2235567777776666 99999999999998864 334678999999999999999999999998654  677789


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-YLGAALALAELH  462 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~  462 (514)
                      |..+...|.+.|++++|.++++++...  .|+ ...+..+...+... |++++|...+.++.+.... +...+..+..++
T Consensus       722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc  799 (1060)
T PLN03218        722 MNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLC  799 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999998764  354 66777777888888 9999999999999885422 234444443333


Q ss_pred             HHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          463 VIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       463 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .  +++++|....+..+..++.        ......+..++|...|++.++
T Consensus       800 ~--~~y~ka~~l~~~v~~f~~g--------~~~~~n~w~~~Al~lf~eM~~  840 (1060)
T PLN03218        800 L--RRFEKACALGEPVVSFDSG--------RPQIENKWTSWALMVYRETIS  840 (1060)
T ss_pred             H--HHHHHHhhhhhhhhhhhcc--------ccccccchHHHHHHHHHHHHH
Confidence            2  3567777666555544322        222223345678888887654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-22  Score=172.63  Aligned_cols=368  Identities=13%  Similarity=0.120  Sum_probs=191.8

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHHhc
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHFAL  121 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~  121 (514)
                      .-+.++..+-+.++-.++.-.|...+..+|--......+....+  ++.+.+.....   .....+.-.....+....-.
T Consensus       132 inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~  209 (564)
T KOG1174|consen  132 INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFN  209 (564)
T ss_pred             HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cchhhhhhhhhheecCCCccHHHHHHHHHHHHHh
Confidence            33445555555555556777777777766633322222222211  12222111111   11112222223344444445


Q ss_pred             CCHHHHHHHHhc--C-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276          122 GETKAAIVEMEG--I-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT  198 (514)
Q Consensus       122 g~~~~A~~~~~~--~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  198 (514)
                      ++...|...+-.  . ..-+.+...+..+|.+++..|++++|+..|+++.-.+|+........+-+....++....-...
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~  289 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM  289 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence            555555544333  2 3338899999999999999999999999999999999998888766644433333221111111


Q ss_pred             CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276          199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI  278 (514)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  278 (514)
                      ..++...   ......|   +.-+...+..+++..|+.+-++.++.+|.+..++...|..+...|+.++|+-.|+.+..+
T Consensus       290 ~~Lf~~~---~~ta~~w---fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  290 DYLFAKV---KYTASHW---FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             HHHHhhh---hcchhhh---hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            1100000   0111222   222444555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHH-HHHhh--cChhHHHHHHHHHHHhcccCchhHHH
Q 010276          279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWER--KDERGALSYAEKSIRIDERHIPGYIM  355 (514)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  355 (514)
                      .|...+.+..+..+|...|++.+|....+.++...|.+...+..+| .++..  ..-++|.+++++++++.|....+...
T Consensus       364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~  443 (564)
T KOG1174|consen  364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL  443 (564)
T ss_pred             chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence            5555555555555555555555555555555555555555555554 22222  23345555555555555555555555


Q ss_pred             HHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL  420 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  420 (514)
                      ++.++...|++++++..+++.+...|+...+..+|.++...+.+.+|+..|..++.++|++....
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            55555555555555555555555555555555555555555555555555555555555544333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.94  E-value=6.8e-26  Score=200.81  Aligned_cols=259  Identities=24%  Similarity=0.236  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRS-I-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK  330 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (514)
                      ..+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.++..+
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~   91 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3668888888888888888865544 3 4777888888888888888888888888888888888888877777775558


Q ss_pred             ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      ++++|+.+++++.+..+ ++..+.....++...++++++...++++....  |.+ ..|..+|.++.+.|++++|+..++
T Consensus        92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888877654 46667777788888899999888888876543  333 568888899999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-
Q 010276          408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-  486 (514)
Q Consensus       408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-  486 (514)
                      ++++.+|+++.+...++.++... |+.+++...+....+..|+++..+..+|.++...|++++|+.+++++++..|++. 
T Consensus       171 ~al~~~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  171 KALELDPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            99999999999998899888887 8888888888888887788888888899999999999999999999999888775 


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          487 LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ++..+|.++...|+.++|..+++++++
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            888889999999999999998888765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-22  Score=179.22  Aligned_cols=425  Identities=19%  Similarity=0.146  Sum_probs=309.0

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      ...++....+..|+|+.|+......+.+.+.|.        -.+.....+|...|+|.+|++--.+.++++|+.+.    
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh--------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k----   71 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH--------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK----   71 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCcc--------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh----
Confidence            345677788999999999988776666444333        35667888999999999999999999999986654    


Q ss_pred             hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcC------
Q 010276           83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR------  155 (514)
Q Consensus        83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g------  155 (514)
                                                 .+.++|..+..+|+|++|+..+.+ +...|.+......++.++....      
T Consensus        72 ---------------------------gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~  124 (539)
T KOG0548|consen   72 ---------------------------GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF  124 (539)
T ss_pred             ---------------------------HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc
Confidence                                       455666677778888888877777 5555777777766666662220      


Q ss_pred             ---------------C---hhhHHHHHHHHHhcCCCCHHHHH-------HHHHh-ccCcccHhHHHhccCCcCCCCC---
Q 010276          156 ---------------H---NRGAVACYKECLRHCPFFIEAIT-------ALAEL-GATPKDIISLFAQTPNRSGRAP---  206 (514)
Q Consensus       156 ---------------~---~~~A~~~~~~~l~~~p~~~~~~~-------~l~~~-~~~~~~~~~~~~~~~~~~~~~~---  206 (514)
                                     +   .+.+.....+.+..+|.+...+.       .++.+ +...... .............|   
T Consensus       125 ~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~-~~~~~~~~~~~~~p~~~  203 (539)
T KOG0548|consen  125 TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLF-YASGIEILASMAEPCKQ  203 (539)
T ss_pred             cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccc-cccccccCCCCCCcccc
Confidence                           0   12222223333344443322221       11111 1100000 00000000000000   


Q ss_pred             --CCcCCc----h------hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276          207 --FDHLDS----S------RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK  274 (514)
Q Consensus       207 --~~~~~~----~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  274 (514)
                        ......    .      .....-.+|...+...++..|++.+..++..+ .+...+...+.+|+..|.+.+.+.....
T Consensus       204 ~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~  282 (539)
T KOG0548|consen  204 EHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK  282 (539)
T ss_pred             cCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence              000000    0      11223456888899999999999999999999 8889999999999999999999999998


Q ss_pred             HHhhCCCC-------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276          275 VRSIDPYI-------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID  346 (514)
Q Consensus       275 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~  346 (514)
                      +++.....       ..+...+|..+...++++.++..|.+++.....        ..+... ...++++...+...-++
T Consensus       283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~  354 (539)
T KOG0548|consen  283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN  354 (539)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence            88765443       234445677888889999999999998775433        222223 55667777777777778


Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      |.-...-...|+.++..|+|..|+..|.+++..+|++ ..|.+.+.+|.++|.+..|+...+.+++++|+....|...|.
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA  434 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            8877777788999999999999999999999999999 889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      ++..+ .+|++|.+.|+++++.+|++.++...+.++...+.......+..++
T Consensus       435 al~~m-k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  435 ALRAM-KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            99999 9999999999999999999999999999998876555555666665

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.9e-20  Score=162.44  Aligned_cols=463  Identities=15%  Similarity=0.139  Sum_probs=367.8

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHH
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHF  119 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~  119 (514)
                      ...|..-|+--..++++..|...|++|+..+..+...+.-.+.+-++......|.+.++   ..-|.-...++....+-.
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44788888888899999999999999999998888888888999998888888888883   244556778888888888


Q ss_pred             hcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCccc---HhHHHh
Q 010276          120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD---IISLFA  196 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~~~~  196 (514)
                      .+|+...|.++|++-..-..+..+|......-.+.+..+.|...|++.+-.+| ....|...+..-...|.   ...+++
T Consensus       153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            89999999999999655566788898888999999999999999999998888 46667777666544443   345555


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChH---HHH--
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKND---EAI--  269 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~---~A~--  269 (514)
                      .+...++.      +...-.....-|..-..+..++.|..+|.-+++.-|.+  .+++......--+-|+..   +++  
T Consensus       232 rAie~~~~------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  232 RAIEFLGD------DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            55554422      11111111222444556778999999999999998887  333333333333445532   332  


Q ss_pred             ---HHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH---------HHHHHHHHHhh--cChhHH
Q 010276          270 ---LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE---------VFVALSVLWER--KDERGA  335 (514)
Q Consensus       270 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~--~~~~~A  335 (514)
                         -.|++.++.+|.+.++|..+..+....|+.+.-.+.|++++...|...+         .|.+.+..-..  .+.+.+
T Consensus       306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert  385 (677)
T KOG1915|consen  306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT  385 (677)
T ss_pred             hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence               3477888999999999999999999999999999999999998776432         22222222111  899999


Q ss_pred             HHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          336 LSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       336 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      .+.|+.++++-|..    +.+|...|....++.+...|.+.+-.++...|.+..+.....+-.+.++++....+|++.++
T Consensus       386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999998874    56788899999999999999999999999999998888888889999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276          412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG-AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV  489 (514)
Q Consensus       412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  489 (514)
                      ..|.+..+|...|..-..+ |+.+.|...|+-|+....-+ |+ .|......-...|.++.|..+|++.++..+...+|.
T Consensus       466 ~~Pe~c~~W~kyaElE~~L-gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi  544 (677)
T KOG1915|consen  466 FSPENCYAWSKYAELETSL-GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI  544 (677)
T ss_pred             cChHhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence            9999999999999999998 99999999999999865333 33 556677778889999999999999999999888888


Q ss_pred             HHHHHHH-----Hhc-----------cHHHHHHHHHHHhc
Q 010276          490 KLAQVFA-----ATN-----------MLQEALSHYEAALR  513 (514)
Q Consensus       490 ~l~~~~~-----~~g-----------~~~~A~~~~~~al~  513 (514)
                      ..|..-.     +.|           ....|...|++|..
T Consensus       545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            8887665     445           56788888888753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.92  E-value=3.6e-25  Score=196.18  Aligned_cols=259  Identities=22%  Similarity=0.237  Sum_probs=120.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      ..|.+++..|++++|++++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            3489999999999999999766544  488999999999999999999999999999999999999888888888 7999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc--ccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                      ++++|..++.+..+..+ ++..+.....++.. ++++++...++++....  |.++..+..+|.++.+.|++++|+..|+
T Consensus        92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999887664 45556666555555 99999999999977654  6678889999999999999999999999


Q ss_pred             HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276          375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG  453 (514)
Q Consensus       375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  453 (514)
                      ++++.+|++ .+...++.++...|+++++...++......|+++..+..+|.++... |++++|+.+|+++++.+|+++.
T Consensus       171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccccccccccccccc
Confidence            999999998 78899999999999999999999999988899999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ++..+|.++...|+.++|..+.++++..
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999999988753

>TIGR00540 hemY_coli hemY protein

Probab=99.92  E-value=1.2e-21  Score=182.47  Aligned_cols=296  Identities=10%  Similarity=0.003  Sum_probs=238.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276          144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ  223 (514)
Q Consensus       144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  223 (514)
                      ....|.+....|+++.|.+.+.++.+..|+....+.                                        ..|.
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~l----------------------------------------laA~  126 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLI----------------------------------------KAAE  126 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHH----------------------------------------HHHH
Confidence            356677888889999999998888887776544443                                        3377


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNI-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL  302 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  302 (514)
                      .....|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++..+..|+++.++..++.++...|++++|
T Consensus       127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a  206 (409)
T TIGR00540       127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL  206 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            78888999999999999888888774 46666788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHH-----HhhcChhHHHHHHHHHHHhcc----cCchhHHHHHHHHHhcCChHHHHHHH
Q 010276          303 SKLVHDLLSIDPSRPEVFVALSVL-----WERKDERGALSYAEKSIRIDE----RHIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                      .+.+.+..+....++.....+-..     ...+..+++...+.++....|    +++..+..++..+...|++++|.+.+
T Consensus       207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l  286 (409)
T TIGR00540       207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII  286 (409)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            999988887755555443222111     111344455667777777777    57899999999999999999999999


Q ss_pred             HHhHhhcCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCChHHHHHHHH--HHHh
Q 010276          374 RGAQELRPDLRS---YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYE--SALR  446 (514)
Q Consensus       374 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~--~a~~  446 (514)
                      +++++..|++..   ...........++.+.+++.++++++..|+++  ..+..+|.++... |++++|.++|+  ++++
T Consensus       287 ~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~  365 (409)
T TIGR00540       287 FDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACK  365 (409)
T ss_pred             HHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhh
Confidence            999999999842   13333444556889999999999999999999  8899999999998 99999999999  5778


Q ss_pred             hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ..|+... +..+|.++.+.|+.++|.+++++++..
T Consensus       366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8887655 669999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.92  E-value=1.4e-21  Score=180.79  Aligned_cols=292  Identities=13%  Similarity=0.059  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-AKVDAIIGKNDEAILNFEKVRSIDPYIMTY-MDEYAMLLKV  295 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~  295 (514)
                      .+..|...+..|++++|.+.+.+..+..+ ++.+++.+ +.+....|+++.|..++.++.+.+|++... ....+.++..
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            35668888889999999988887655433 35555555 666699999999999999999999988543 3455899999


Q ss_pred             hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH--------HHHHHHHhcCCh
Q 010276          296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI--------MKGNLLLSMKRP  366 (514)
Q Consensus       296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  366 (514)
                      .|++++|...++++.+..|+++.++..++.++.. |++++|+..+.+..+..+.++....        .+........+-
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999999999988 9999999999999887665443222        112222223334


Q ss_pred             HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +.....++..-...|++ .....++..+...|+.++|...++++++. |.++......+.+  .. ++.++++...++.+
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~-~~~~~al~~~e~~l  321 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KT-NNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cC-CChHHHHHHHHHHH
Confidence            44555555554555655 68899999999999999999999999995 4456666555555  33 88999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      +..|+++..+..+|.++...|++++|.+.|+++++..|++..+..++.++.+.|+.++|.++|++++.+
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999899999999999999999999999753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-21  Score=178.52  Aligned_cols=375  Identities=15%  Similarity=0.033  Sum_probs=303.0

Q ss_pred             hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHH-HHHHHHHHh
Q 010276           42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK-YKIASCHFA  120 (514)
Q Consensus        42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~la~~~~~  120 (514)
                      ..+.|+.++-.+...|.-..|+...+..+...|.                             |+++.+. ..-..|..+
T Consensus       356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~-----------------------------ps~~s~~Lmasklc~e~  406 (799)
T KOG4162|consen  356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ-----------------------------PSDISVLLMASKLCIER  406 (799)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC-----------------------------CCcchHHHHHHHHHHhc
Confidence            3468888899999999989999999988887631                             1222233 333455667


Q ss_pred             cCCHHHHHHHHhcCCC------CCccHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276          121 LGETKAAIVEMEGIPS------KARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITALAE  183 (514)
Q Consensus       121 ~g~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~  183 (514)
                      .|..++++.+..++..      ..-.+..+..+|.+|..+-           ...++++.++++++.+|.|+.+...+  
T Consensus       407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l--  484 (799)
T KOG4162|consen  407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL--  484 (799)
T ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH--
Confidence            8888888888777422      1335777888888876543           24678999999999999998877665  


Q ss_pred             hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHh
Q 010276          184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAII  262 (514)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~  262 (514)
                                                            +.-+...++.+.|.+..+++++.++ +++.+|..++.++...
T Consensus       485 --------------------------------------alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~  526 (799)
T KOG4162|consen  485 --------------------------------------ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ  526 (799)
T ss_pred             --------------------------------------HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence                                                  7778888999999999999999954 6689999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----------cCh
Q 010276          263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----------KDE  332 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~  332 (514)
                      +++.+|+...+.++...|+|.........+-...++.++++..+...+......+.+...++..-..          .+.
T Consensus       527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~  606 (799)
T KOG4162|consen  527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQP  606 (799)
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccc
Confidence            9999999999999999999988888888888889999999999888877655443333333221111          334


Q ss_pred             hHHHHHHHHHHHh-------------------cccC-------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HH
Q 010276          333 RGALSYAEKSIRI-------------------DERH-------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS  385 (514)
Q Consensus       333 ~~A~~~~~~~~~~-------------------~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~  385 (514)
                      .+|++...++...                   .|..       ...|...+..+...+..++|..++.++-.++|.. ..
T Consensus       607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~  686 (799)
T KOG4162|consen  607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV  686 (799)
T ss_pred             cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence            4555544443321                   1111       1346788999999999999999999999999987 78


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH--HHHHHHhhCCCChHHHHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK--FYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      |+..|.++...|+..+|.+.|..++.++|+++.....+|.++... |+..-|..  .+..+++++|.++++|+.+|.++.
T Consensus       687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k  765 (799)
T KOG4162|consen  687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK  765 (799)
T ss_pred             HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 99887777  999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhCCCch
Q 010276          464 IEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      +.|+.++|.++|..++++.++++
T Consensus       766 ~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  766 KLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HccchHHHHHHHHHHHhhccCCC
Confidence            99999999999999999998764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.91  E-value=5.1e-20  Score=165.99  Aligned_cols=429  Identities=16%  Similarity=0.142  Sum_probs=324.7

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      +.-..++..+.-.+..++|.+.++..+..++..|.                               .++..-..|..+..
T Consensus         5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e-------------------------------HgeslAmkGL~L~~   53 (700)
T KOG1156|consen    5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPE-------------------------------HGESLAMKGLTLNC   53 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc-------------------------------cchhHHhccchhhc
Confidence            34457788888899999999999999999998774                               45556667777788


Q ss_pred             cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                      +|+.++|...... +...+.+...|..+|.++....+|++|+++|+.++...|+|...+..++-+....+++......-.
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~  133 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN  133 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999998887 556688999999999999999999999999999999999999999999988888887766665554


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHHhCChHHHHHH
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF---PNN-----IHILLEMAKVDAIIGKNDEAILN  271 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~  271 (514)
                      ..+..      .+..-..++..|..+.-.|++..|..+++...+..   |+.     .+.......++...|.+++|.+.
T Consensus       134 ~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~  207 (700)
T KOG1156|consen  134 QLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH  207 (700)
T ss_pred             HHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            44422      23333333444888999999999999999887654   332     34566677888888999999888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh-hcChhHHH-HHHHHHHHhcccC
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGAL-SYAEKSIRIDERH  349 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~A~-~~~~~~~~~~~~~  349 (514)
                      +..--..--+........+.++...+++++|..++...+..+|++...+..+-.++. -.+..+++ ..|...-+..|..
T Consensus       208 L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  208 LLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             HHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            876554444455667778999999999999999999999999999988877766664 23333444 4444443333321


Q ss_pred             chh--------------------------------HHHHHHHHHhcCChHHHHHHHHHhH-------hhc----------
Q 010276          350 IPG--------------------------------YIMKGNLLLSMKRPEAAVIAFRGAQ-------ELR----------  380 (514)
Q Consensus       350 ~~~--------------------------------~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~----------  380 (514)
                      ...                                ...+-.+|   .+.... ...++.+       ...          
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~  363 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGK  363 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccc
Confidence            110                                11111111   111111 1222222       111          


Q ss_pred             ---CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHH
Q 010276          381 ---PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       381 ---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                         |..  ..++.++.-+...|+++.|..+++.++...|.-++.+...|+++... |+.++|..++..+.+++-.+..+-
T Consensus       364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~-G~l~eAa~~l~ea~elD~aDR~IN  442 (700)
T KOG1156|consen  364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA-GLLDEAAAWLDEAQELDTADRAIN  442 (700)
T ss_pred             cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccchhHHHH
Confidence               111  23577899999999999999999999999999999999999999998 999999999999999987766666


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------h-HHHHH--HHHHHHhccHHHHHHHHHHH
Q 010276          456 LALAELHVIEGRNGDAVSLLERYLKDWADD-------S-LHVKL--AQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~-~~~~l--~~~~~~~g~~~~A~~~~~~a  511 (514)
                      ..-|....+.++.++|.+.+.+..+...+.       + .|+.+  |..|.++|++..|++-|..+
T Consensus       443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            678999999999999999998876655321       3 67666  88999999999998877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.91  E-value=2.2e-21  Score=187.44  Aligned_cols=244  Identities=11%  Similarity=-0.007  Sum_probs=187.2

Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh
Q 010276          264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK---------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER  333 (514)
Q Consensus       264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~  333 (514)
                      .+++|+..|+++++.+|+++.++..+|.++...         +++++|...++++++.+|+++.++..+|.++.. |+++
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence            456888888888888888888888888776543         336788888888888888888888888887766 8888


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA  412 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  412 (514)
                      +|+..++++++.+|+++.+++.+|.++...|++++|+..++++++++|.+ ..+..++.++...|++++|+..+++++..
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888887 34455566677788888888888888876


Q ss_pred             C-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHH
Q 010276          413 M-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVK  490 (514)
Q Consensus       413 ~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~  490 (514)
                      . |+++..+..+|.++... |++++|...+.+.....|....+...++..+...|+  +|...+++.++...... ....
T Consensus       436 ~~p~~~~~~~~la~~l~~~-G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~  512 (553)
T PRK12370        436 HLQDNPILLSMQVMFLSLK-GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL  512 (553)
T ss_pred             ccccCHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence            4 67788888888888887 888888888888877778777788888888887773  67776776655443221 2223


Q ss_pred             HHHHHHHhccHHHHHHHHHHH
Q 010276          491 LAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      ...+|.-.|+.+.+..+ +++
T Consensus       513 ~~~~~~~~g~~~~~~~~-~~~  532 (553)
T PRK12370        513 LPLVLVAHGEAIAEKMW-NKF  532 (553)
T ss_pred             HHHHHHHHhhhHHHHHH-HHh
Confidence            67777777777777666 544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.91  E-value=6e-22  Score=186.01  Aligned_cols=365  Identities=13%  Similarity=0.036  Sum_probs=228.6

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc-ccc----CChhHHHHHHHHH
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN-VSA----INENEVKYKIASC  117 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~----~~~~~~~~~la~~  117 (514)
                      +.++-.+|..|...-+...|.++|++|.++||.+..+....+..|......+.|..... ...    ......+..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            45777778877777777888888888888888777777777777776666655554431 111    1123334457777


Q ss_pred             HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276          118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      |...++...|+..++.. ...|.+...|..+|.+|...|++.-|++.|.++...+|.+.......+.+....+++.+++.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            77777777777777773 44577777777777777777777777777777777777776666666555555555544443


Q ss_pred             ccCCcCCCCCCC-cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHh-----
Q 010276          197 QTPNRSGRAPFD-HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--------PNNIHILLEMAKVDAII-----  262 (514)
Q Consensus       197 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~-----  262 (514)
                      ............ .............+..+...|-+.+|...+++.++..        -++.-.|..++......     
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~  731 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP  731 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence            332221111100 0011122223334455555666666666666655421        11222222222221110     


Q ss_pred             ------------------CCh------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------hCChhHHHHHHHHHh
Q 010276          263 ------------------GKN------DEAILNFEKVRSIDPYIMTYMDEYAMLLKV--------KCDYSKLSKLVHDLL  310 (514)
Q Consensus       263 ------------------~~~------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~  310 (514)
                                        +..      --+.+++-..++.- ..+..|+++|..|++        +.+...|+.++.+++
T Consensus       732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV  810 (1238)
T KOG1127|consen  732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV  810 (1238)
T ss_pred             cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence                              000      01222222222211 114456777776665        223357888888999


Q ss_pred             hcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276          311 SIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL  389 (514)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l  389 (514)
                      +...++...|..+|.+-..|++.-|..+|-+.+...|.....|.++|.++....+++.|...|.++..++|.+ ..|...
T Consensus       811 ~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~  890 (1238)
T KOG1127|consen  811 SLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE  890 (1238)
T ss_pred             HHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence            8888888899998888433888888889988888889888889999999999999999999999998888887 667777


Q ss_pred             HHHHHhcCCHHHHHHHHHH
Q 010276          390 VHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~  408 (514)
                      +.+....|+.-++...+..
T Consensus       891 Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  891 ALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             HHhHHHHHHHHHHHHHHHh
Confidence            7777777766666666665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.91  E-value=3.2e-20  Score=171.83  Aligned_cols=257  Identities=11%  Similarity=0.051  Sum_probs=198.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      +......|+++.|...+.++.+.+|++.. .....+.++...|++++|...+++..+.+|+++.++..++.++...|+++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            55557778888888888888777777643 33344777778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHH-HHH--------HhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHH
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVAL-SVL--------WERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI  371 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l-~~~--------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  371 (514)
                      +|...+.++.+..+.++.....+ ...        ....+.+.....++......|+++.+...++..+...|+.++|..
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            88877777777665554432211 011        111333344444555545567789999999999999999999999


Q ss_pred             HHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      .++++++..|+.......+.+  ..+++++++..+++.++.+|+++..+..+|.++... +++++|.++|+++++..|++
T Consensus       285 ~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        285 IILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCH
Confidence            999999966655444334433  459999999999999999999999999999999998 99999999999999999985


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                       ..+..++.++.+.|+.++|..++++++...
T Consensus       362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        362 -YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence             556689999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=99.91  E-value=2e-21  Score=187.62  Aligned_cols=262  Identities=14%  Similarity=0.030  Sum_probs=224.3

Q ss_pred             hHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCCCHH
Q 010276          217 HRYVEAQCCIA---SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIMT  284 (514)
Q Consensus       217 ~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~  284 (514)
                      ..+.+|.....   .+++++|+..|+++++.+|+++.++..+|.++...         +++++|...++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            35566765543   34578999999999999999999999999887744         3479999999999999999999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM  363 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      ++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.. |++++|+..++++++.+|.++..+..++.+++..
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998888 9999999999999999999988777777778889


Q ss_pred             CChHHHHHHHHHhHhhc-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276          364 KRPEAAVIAFRGAQELR-PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                      |++++|+..+++++... |+. ..+..+|.++...|++++|...+.++....|.+...+..++..+... |  ++|...+
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~a~~~l  496 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN-S--ERALPTI  496 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc-H--HHHHHHH
Confidence            99999999999999875 555 56889999999999999999999999999999899999999999887 6  4777777


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      ++.++.....+.-...+..++.-.|+.+.+..+ +++.+..
T Consensus       497 ~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        497 REFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            776664333332233378888888998888887 7665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.1e-22  Score=168.01  Aligned_cols=248  Identities=16%  Similarity=0.166  Sum_probs=201.2

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      ...+|.-....|.||++.|.+.+|...++..++..| .++.+..++.+|.+..++..|+..+...++..|.+...+...+
T Consensus       219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A  297 (478)
T KOG1129|consen  219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA  297 (478)
T ss_pred             chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence            345666666778899999999999999988888776 5688888889999999999999999999988898888888888


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  369 (514)
                      .++..+++.++|.++|+.+++.+|.+.++.-.++.-|.- ++.+-|+.+|++.++....+++.+.++|.+++..++++-+
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence            899888988888888888888888888887777765555 7788888888888888888888888888888888888888


Q ss_pred             HHHHHHhHhhcC--Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          370 VIAFRGAQELRP--DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       370 ~~~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +..|++++....  +.  ++|+++|.+....|++.-|..+|+-++..+|++..++.++|.+-.+. |+.++|..++..+-
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~-G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS-GDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc-CchHHHHHHHHHhh
Confidence            888888877643  32  56888888888888888888888888888888888888888777776 88888888888777


Q ss_pred             hhCCCChHHHHHHHH
Q 010276          446 RLEPGYLGAALALAE  460 (514)
Q Consensus       446 ~~~~~~~~~~~~la~  460 (514)
                      ...|+-.+..++++.
T Consensus       457 s~~P~m~E~~~Nl~~  471 (478)
T KOG1129|consen  457 SVMPDMAEVTTNLQF  471 (478)
T ss_pred             hhCccccccccceeE
Confidence            777776666555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=2.8e-20  Score=153.85  Aligned_cols=267  Identities=15%  Similarity=0.087  Sum_probs=231.9

Q ss_pred             HHHHhcCHHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          224 CCIASNDYKGGLELFAELLQR---FPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL  293 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  293 (514)
                      +++..++...|-......+..   .|.       +......+|.||.++|.+.+|.+.++..++..| .++.+..++.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            455667777776666555542   121       123445789999999999999999999998766 577889999999


Q ss_pred             HHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276          294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      .+..++..|+..+.+.++..|.+...+...+.++.. ++.++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence            999999999999999999999999999999999888 9999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      |++.+++.-.+ +.+.++|.|++..++++-++..|++++....   .-.++|+++|.+.... |++..|..+|+-++..+
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~~d  425 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALTSD  425 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhccC
Confidence            99999998776 7899999999999999999999999998643   2378999999999998 99999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHH
Q 010276          449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA  492 (514)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~  492 (514)
                      |++.+++.+||.+-.+.|+.++|..++..+-...|+- +..++++
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ  470 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence            9999999999999999999999999999999998875 3444444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.89  E-value=2.3e-20  Score=175.60  Aligned_cols=384  Identities=14%  Similarity=0.097  Sum_probs=272.7

Q ss_pred             cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                      .++...|+..|-+ +...+.-..++..+|.+|...-+...|.++|+++.+++|.+.+++...+..+....+++.++....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3446677766555 566688889999999999999999999999999999999999999999999999999888877644


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID  279 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  279 (514)
                      ......+. ......|..   +|..+...++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++
T Consensus       551 ~~~qka~a-~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  551 RAAQKAPA-FACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             HHhhhchH-HHHHhhhhh---ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            44333321 122333433   68899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--------cChhHHHHHHHHHHHh------
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--------KDERGALSYAEKSIRI------  345 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~A~~~~~~~~~~------  345 (514)
                      |.+..+.+..+.+....|++.+|+..+...+............++.++.+        |=..+|.+++++.++.      
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887655444333333333322        4444566666555442      


Q ss_pred             -c-ccCchhHHHHHHHHHh-----------------------cCCh------HHHHHHHHHhHhhcCChHHHHHHHHHHH
Q 010276          346 -D-ERHIPGYIMKGNLLLS-----------------------MKRP------EAAVIAFRGAQELRPDLRSYQGLVHSYL  394 (514)
Q Consensus       346 -~-~~~~~~~~~~~~~~~~-----------------------~~~~------~~A~~~~~~~~~~~~~~~~~~~l~~~~~  394 (514)
                       . .++...|..+|....-                       .+..      --+.+++-..++.......|+++|..|.
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL  786 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence             1 1222222222221110                       0100      1122223222222222234666666665


Q ss_pred             h--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          395 Q--------FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       395 ~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      +        ..+...|+.++.++++...++...|..+|.+ ... |++.-|..+|-+.+...|.....|.++|.++.+..
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~-gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~  864 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGI-GNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ  864 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hcc-chhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence            5        2233467777777777777777777777776 333 67777777777777777777777777777777777


Q ss_pred             ChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      +++-|...|.++..+.|.+. .|...+.+-...|+.-++...|..
T Consensus       865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            77777777777777777764 676777777777777666666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=174.92  Aligned_cols=230  Identities=14%  Similarity=0.089  Sum_probs=172.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      |..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHH--------HHhhcChhHHHHHHHHHHHhcc--cCchhHHHHHHHHHhcCChHH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSV--------LWERKDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEA  368 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      -.+|..++.+.+...|........--.        ......+..-.+.|-.+....|  .++++...+|.+|...|+|+.
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999998876653221110000        0000112233445555555555  566677777777777777777


Q ss_pred             HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      |+.+|+.++...|++ ..|+.||-.+....+.++|+..|++++++.|....+++++|..+..+ |.|++|.++|-.|+.+
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHh
Confidence            777777777777776 56777777777777777777777777777777777777777777776 7777777777777665


Q ss_pred             CC
Q 010276          448 EP  449 (514)
Q Consensus       448 ~~  449 (514)
                      .+
T Consensus       528 q~  529 (579)
T KOG1125|consen  528 QR  529 (579)
T ss_pred             hh
Confidence            43

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.89  E-value=3.5e-20  Score=164.20  Aligned_cols=230  Identities=12%  Similarity=0.064  Sum_probs=138.4

Q ss_pred             cCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHH
Q 010276          229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK  304 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  304 (514)
                      +..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            566777777777775333    2255677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276          305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL  383 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (514)
                      .|+++++++|++..++..+|.++.. |++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            7777777777777777777776655 7777777777777777776653211 1122334556677777775554332221


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-CChHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREA-------MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-GYLGAA  455 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~  455 (514)
                       .|. .+.+....|+..++ ..++.+       .+..|..+.+|+++|.++... |++++|+.+|+++++.+| +..+..
T Consensus       199 -~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~-g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 -QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL-GDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             -ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCchHHHHH
Confidence             111 23333344444322 122222       233444555666666666665 666666666666666664 444444


Q ss_pred             HHHHHHHH
Q 010276          456 LALAELHV  463 (514)
Q Consensus       456 ~~la~~~~  463 (514)
                      +.+..+..
T Consensus       275 ~~~~e~~~  282 (296)
T PRK11189        275 YALLELAL  282 (296)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.88  E-value=6.4e-19  Score=158.98  Aligned_cols=246  Identities=14%  Similarity=0.138  Sum_probs=201.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc
Q 010276          108 NEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA  186 (514)
Q Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  186 (514)
                      ...++..+.-.+..++|...+..++.|... |.+++.+.+.|..+...|+.++|....+.+++.+|.+...|..+     
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~-----   81 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL-----   81 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-----
Confidence            345566666667899999999999997555 99999999999999999999999999999999999999888776     


Q ss_pred             CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276          187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND  266 (514)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  266 (514)
                                                         |.++....+|++|+.+|+.++...|+|..++.-++....++++++
T Consensus        82 -----------------------------------gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   82 -----------------------------------GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             -----------------------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence                                               888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC---CCChHHHHHHHHHHh-----h-cChhHHHH
Q 010276          267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID---PSRPEVFVALSVLWE-----R-KDERGALS  337 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~-----~-~~~~~A~~  337 (514)
                      .....-.+.++..|.....|...+..+...|++..|..+.+...+..   |+....-.....++.     . |.+++|++
T Consensus       127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale  206 (700)
T KOG1156|consen  127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE  206 (700)
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            99999999999999999999999999999999999999988777654   333222222222222     2 77777777


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276          338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY  393 (514)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~  393 (514)
                      .+..--..--+........+.++.+++++++|...|...+..+|++ ..+..+-.++
T Consensus       207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence            6655433333334455678899999999999999999999999998 4344444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=4.7e-21  Score=170.68  Aligned_cols=254  Identities=20%  Similarity=0.166  Sum_probs=216.8

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD  331 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  331 (514)
                      +..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|.. |.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999 66


Q ss_pred             hhHHHHHHHHHHHhcccCchhHHH-------HHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHhcCCHHH
Q 010276          332 ERGALSYAEKSIRIDERHIPGYIM-------KGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  401 (514)
                      -.+|++++.+-+...|........       ...-......+..-.+.|-.+....|.   .++...||.+|.-.|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            679999999999887753221110       000111112233445666666666663   3789999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      |+.+|+.++...|++...|..+|..+..- .+.++|+..|.+|+++.|+...++++||..+..+|.|++|.++|-.++.+
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999987 89999999999999999999999999999999999999999999999998


Q ss_pred             CCCc-----------hHHHHHHHHHHHhccHHHHHHH
Q 010276          482 WADD-----------SLHVKLAQVFAATNMLQEALSH  507 (514)
Q Consensus       482 ~~~~-----------~~~~~l~~~~~~~g~~~~A~~~  507 (514)
                      .+..           .+|..|-.++..+++.+-+...
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            7541           3788887888888887755443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=3.5e-20  Score=164.13  Aligned_cols=231  Identities=11%  Similarity=0.011  Sum_probs=181.6

Q ss_pred             CChHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHH
Q 010276          263 GKNDEAILNFEKVRSIDP---Y-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALS  337 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~  337 (514)
                      +..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.. |++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            467788888888886433   3 367799999999999999999999999999999999999999998888 99999999


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276          338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA  417 (514)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  417 (514)
                      .|+++++++|++..++..+|.++...|++++|+..++++++.+|++........+....+++++|+..+.+.....+.+.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~  199 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ  199 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence            99999999999999999999999999999999999999999999885322222334567889999999988775543322


Q ss_pred             HHHHHHHHHHHhcCCChHHH--HHHHH----HHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--hHHH
Q 010276          418 KALKLVGDVHASNASGREKA--KKFYE----SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--SLHV  489 (514)
Q Consensus       418 ~~~~~l~~~~~~~~~~~~~A--~~~~~----~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~  489 (514)
                        |. .+.+.... |+..++  ...+.    ...++.|..+++|+.+|.++...|++++|+.+|+++++.+|.+  +..+
T Consensus       200 --~~-~~~~~~~l-g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~  275 (296)
T PRK11189        200 --WG-WNIVEFYL-GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY  275 (296)
T ss_pred             --cH-HHHHHHHc-cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence              22 34444455 665433  32222    2335677788999999999999999999999999999999755  2444


Q ss_pred             HHHHHHHH
Q 010276          490 KLAQVFAA  497 (514)
Q Consensus       490 ~l~~~~~~  497 (514)
                      .+..+...
T Consensus       276 ~~~e~~~~  283 (296)
T PRK11189        276 ALLELALL  283 (296)
T ss_pred             HHHHHHHH
Confidence            44444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.1e-19  Score=155.02  Aligned_cols=303  Identities=17%  Similarity=0.153  Sum_probs=200.7

Q ss_pred             ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276           38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC  117 (514)
Q Consensus        38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~  117 (514)
                      .+...++-....|..++++.+|.+|+..|..|++.+|++...+.                               ..+.+
T Consensus        44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~-------------------------------nRAa~   92 (486)
T KOG0550|consen   44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYS-------------------------------NRAAT   92 (486)
T ss_pred             hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhc-------------------------------hhHHH
Confidence            45566788899999999999999999999999999996654444                               44555


Q ss_pred             HHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276          118 HFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      ++..|++++|.-..++ +...+..+......++++...++..+|...|+.   ..|.  .+.                 .
T Consensus        93 ~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~---~~~~--~~a-----------------n  150 (486)
T KOG0550|consen   93 LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS---KQAY--KAA-----------------N  150 (486)
T ss_pred             HHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh---hhhh--HHh-----------------h
Confidence            5667777777776655 444566677777888888888888777777761   1111  000                 1


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                      .+...-...+.....|.-....++.+.++...|++++|.+.--.+++.++.+.++++..|.+++..++.+.|+.+|++++
T Consensus       151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal  230 (486)
T KOG0550|consen  151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL  230 (486)
T ss_pred             hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence            11111111222222344455567789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH-HhhcChhHHHHHHHHHHHhcccCc----h
Q 010276          277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL-WERKDERGALSYAEKSIRIDERHI----P  351 (514)
Q Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~----~  351 (514)
                      .++|+...+-...                      ..|.--..+..-|+- +..|++.+|.++|..++.++|++.    .
T Consensus       231 ~ldpdh~~sk~~~----------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  231 RLDPDHQKSKSAS----------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             ccChhhhhHHhHh----------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            9999864321100                      011112223333332 222555555555555555555543    2


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                      .|.+++.+..++|+..+|+...+.+++++|.. .++...|.++...++|++|++.++++++...+
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            35556666666666666666666666666665 66666666666666666666666666655443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.2e-18  Score=142.63  Aligned_cols=292  Identities=19%  Similarity=0.247  Sum_probs=234.6

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHH
Q 010276          145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC  224 (514)
Q Consensus       145 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (514)
                      +..|.-+.-..+.++|++.|..+++.+|...++...|                                        |..
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL----------------------------------------GnL   78 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL----------------------------------------GNL   78 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH----------------------------------------HHH
Confidence            4456666667888999999999999888888877666                                        777


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          225 CIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       225 ~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      +.+.|..+.|+.+.+.+++. |+-     ..+...+|.-|+..|-+|.|...|....+....-..++..+..+|....+|
T Consensus        79 fRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW  157 (389)
T COG2956          79 FRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW  157 (389)
T ss_pred             HHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence            78888889999888877653 332     457788899999999999999999988876666677888999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276          300 SKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                      ++|++..++..+..+..-     ..+..++..+.. .+.+.|+..+.++++.+|++..+-..+|.+....|+|+.|++.+
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~  237 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL  237 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence            999999999988877763     345556655554 88899999999999999999999999999999999999999999


Q ss_pred             HHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          374 RGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       374 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      +.+++.+|+.  .+...+..+|...|+.++....+.++.+..++ +.+...++..-... .-.+.|..++.+-+...|+.
T Consensus       238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ-EGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh-hChHHHHHHHHHHHhhCCcH
Confidence            9999999998  67888999999999999999999999998887 55566666666666 67788888888889988874


Q ss_pred             hHHHHHHHHHHHH---cCChhHHHHHHHHHHh
Q 010276          452 LGAALALAELHVI---EGRNGDAVSLLERYLK  480 (514)
Q Consensus       452 ~~~~~~la~~~~~---~g~~~~A~~~~~~~~~  480 (514)
                       ...+.+......   .|...+.+..+++++.
T Consensus       316 -~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         316 -RGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             -HHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence             444444444332   2445556666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=1.1e-17  Score=140.26  Aligned_cols=412  Identities=15%  Similarity=0.151  Sum_probs=273.6

Q ss_pred             HHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhh
Q 010276            8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS   87 (514)
Q Consensus         8 ~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   87 (514)
                      +..++.+.+|..|+.+.++-+.       ....+.-..-.++|.+++..|+|++|...|+-+...+.             
T Consensus        29 Ledfls~rDytGAislLefk~~-------~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-------------   88 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLN-------LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-------------   88 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhc-------cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-------------
Confidence            4566777888888877665442       12223334557788888888888888888887776421             


Q ss_pred             hhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276           88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC  167 (514)
Q Consensus        88 ~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  167 (514)
                                        .+.++...+|-|++-+|.|.+|.++..+.+..|-..+.++.++   .+.|+-++ +-.|...
T Consensus        89 ------------------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~-~~~fh~~  146 (557)
T KOG3785|consen   89 ------------------APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKR-ILTFHSS  146 (557)
T ss_pred             ------------------CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHH-HHHHHHH
Confidence                              3456677778888888888888888777666555555554444   33344222 2223332


Q ss_pred             HhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 010276          168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN  247 (514)
Q Consensus       168 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~  247 (514)
                      +....   +                                        ..+-+|.+.+..-.|.+|+++|.+++..+|+
T Consensus       147 LqD~~---E----------------------------------------dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  147 LQDTL---E----------------------------------------DQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HhhhH---H----------------------------------------HHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            22111   1                                        1122366666777888999999999988888


Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH------------------
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL------------------  309 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------  309 (514)
                      ....-..+|.||+++.-++-+.+.+.--++..|+++.+....+...++.=+-..|..-...+                  
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN  263 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN  263 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence            88888888999999999998988888888888888887777776665532211111111111                  


Q ss_pred             ----------hhcCCC----ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          310 ----------LSIDPS----RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       310 ----------~~~~~~----~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                                ++.-|.    -|++..++...|.. ++..+|.....   ..+|..|.-+...|.++...|+--...+.++
T Consensus       264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlK  340 (557)
T KOG3785|consen  264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLK  340 (557)
T ss_pred             eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence                      111111    25666666666655 88888877654   4678888888888888888887554444444


Q ss_pred             HhHh---hcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          375 GAQE---LRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       375 ~~~~---~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      -+-+   +-..      . +....++.+++-..++++.+.++...-...-++....++++..+... |++.+|.+.|-+.
T Consensus       341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at-gny~eaEelf~~i  419 (557)
T KOG3785|consen  341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT-GNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh-cChHHHHHHHhhh
Confidence            3322   2111      1 34667788888888899999888888888888888889999999988 9999999998776


Q ss_pred             HhhCCCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          445 LRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       445 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      -..+-.+ ......|++||...|+++-|.+.+-+.  ..|..  ..+..++....+.+++--|-+.|..
T Consensus       420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~  486 (557)
T KOG3785|consen  420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDE  486 (557)
T ss_pred             cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            5444222 234456899999999999988877542  22332  2555567777777777666666553

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.86  E-value=5.3e-19  Score=139.60  Aligned_cols=200  Identities=17%  Similarity=0.063  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-  329 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  329 (514)
                      +...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++.+.|..+.. 
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            3444444444444444444444444444444444444444444444444444444444444444444333333332222 


Q ss_pred             cChhHHHHHHHHHHHh--cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRI--DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      |++++|...|++++..  .|..+..+.++|.|..+.|+++.|...|+++++.+|+. .+...++..++..|++..|..++
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence            3333333333333321  22223334444444444444444444444444444443 33444444444444444444444


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ++.....+-....+.....+-... |+.+.+-++=.+..+..|..
T Consensus       197 ~~~~~~~~~~A~sL~L~iriak~~-gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         197 ERYQQRGGAQAESLLLGIRIAKRL-GDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCc
Confidence            444433333333333333333333 44444444333333344433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.86  E-value=4e-19  Score=140.27  Aligned_cols=202  Identities=16%  Similarity=0.115  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL  361 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      ..+...+|.-|...|++..|..-++++++.+|++..+|..++.+|.. |+.+.|.+.|++++.++|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            35788899999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          362 SMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      .+|++++|...|++++.. |..    .++.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+... |++..|
T Consensus       115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~-~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA-GDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc-ccchHH
Confidence            999999999999999863 432    67999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      ..++++.....+-..+.+....++-...|+-+.|-++=.+.....|.+.
T Consensus       193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            9999998888777788888888888999999999999888888888874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=8.2e-18  Score=139.27  Aligned_cols=290  Identities=17%  Similarity=0.181  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAML  292 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~  292 (514)
                      -|..|.-++-.++.++|++.|..+++.+|...++...+|..+.+.|..+.|+..-+..++. |+.     ..+...+|.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence            4677888889999999999999999999999999999999999999999999998877764 443     4578899999


Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc-----hhHHHHHHHHHhcCCh
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-----PGYIMKGNLLLSMKRP  366 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  366 (514)
                      |...|-++.|..+|..+.+...--..+...+..+|.. .++++|++.-++..++.+...     ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999999988766677888888888888 999999999999999887653     3466788888888999


Q ss_pred             HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      +.|...+.++++.+|+. .+-..+|.+....|++..|++.++.+++.+|+. +.+...+..+|... |+.++.+..+.++
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l-g~~~~~~~fL~~~  275 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL-GKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence            99999999999999998 889999999999999999999999999999986 67788899999999 9999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh---ccHHHHHHHHHH
Q 010276          445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT---NMLQEALSHYEA  510 (514)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~  510 (514)
                      .+..++ +.+-..++.+-....-.+.|..++.+-+...|+-...+.+-......   |...+.+..++.
T Consensus       276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~  343 (389)
T COG2956         276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD  343 (389)
T ss_pred             HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence            998876 56777788888888888999999999999999987666655544432   344555544444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.86  E-value=5.5e-19  Score=153.64  Aligned_cols=199  Identities=17%  Similarity=0.086  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                      +..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|.+.+++++...|.++.          
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----------  100 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----------  100 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----------
Confidence            4455555555555555555555555555555555555555555555555555555555555444444444          


Q ss_pred             hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CCh-HHHHHHHHHHHhcCCHHHHHHH
Q 010276          329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYA  405 (514)
Q Consensus       329 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~  405 (514)
                                             .+..+|.++...|++++|+..+++++...  |.. ..+..+|.++...|++++|...
T Consensus       101 -----------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521       101 -----------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence                                   44444444444445555555554444322  111 3445555556666666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      +.+++..+|+++..+..+|.++... |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       158 LTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6666666665555666666666665 66666666666666555555555555666666666666666555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5e-20  Score=157.17  Aligned_cols=267  Identities=16%  Similarity=0.126  Sum_probs=233.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      ...+..++...+|.+|+..+..+++..|++...|...+.+++..|++++|....+..++++|.........+.++...++
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            44577888999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhHHHHHHHHHh------------hcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276          299 YSKLSKLVHDLL------------SIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL  359 (514)
Q Consensus       299 ~~~A~~~~~~~~------------~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      ..+|...++..-            .+.|.+      ......-+.++.. +++++|...--..+++++.+.++++..|.+
T Consensus       133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~  212 (486)
T KOG0550|consen  133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC  212 (486)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence            877775554211            111111      1222333445555 999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhHhhcCCh-H------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDL-R------------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKL  422 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~-~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~  422 (514)
                      ++..++.+.|+..|++++.++|+. .            .|..-|.-.++.|++.+|.+.|..++.++|++    +..+.+
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            999999999999999999999986 2            36677889999999999999999999999986    567889


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      ++.+...+ |+..+|+.....+++++|....++...|.++..++++++|++.++++++...+..
T Consensus       293 ra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e  355 (486)
T KOG0550|consen  293 RALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE  355 (486)
T ss_pred             hHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999 9999999999999999999999999999999999999999999999999887643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.85  E-value=8.9e-19  Score=152.35  Aligned_cols=198  Identities=14%  Similarity=0.099  Sum_probs=140.5

Q ss_pred             hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML  292 (514)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  292 (514)
                      .....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..++.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChhHHHHHHHHHhhcC--CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276          293 LKVKCDYSKLSKLVHDLLSID--PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  369 (514)
                      +...|++++|...+++++...  +..+..+..+|.++.. |++++|...+.+++..+|.++..+..+|.++...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999988743  2334444445544444 5555555555555555555544555555555555555555


Q ss_pred             HHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      ...+++++...|.. ..+..++.++...|+.++|..+.+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555554443333 333344444444444444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1e-16  Score=143.42  Aligned_cols=448  Identities=14%  Similarity=0.111  Sum_probs=263.0

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccC--ChhHHHHHHHHHHHhc
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAI--NENEVKYKIASCHFAL  121 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~la~~~~~~  121 (514)
                      +.++.--+.+...|+|++|.+...+.+...|++.++...-..+.++.+.+++|.........  ......+..|.|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            45666667788999999999999999999999999888777778888888888854432211  1112226999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCc
Q 010276          122 GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR  201 (514)
Q Consensus       122 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  201 (514)
                      +..++|+..++.+  .+.+.....+.|++++++|+|++|...|+..++.+-++.+......-+...........+.    
T Consensus        93 nk~Dealk~~~~~--~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~----  166 (652)
T KOG2376|consen   93 NKLDEALKTLKGL--DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS----  166 (652)
T ss_pred             ccHHHHHHHHhcc--cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh----
Confidence            9999999999944  4556778899999999999999999999999988776655544332111100000001111    


Q ss_pred             CCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCc-------HHHHHHHHHHHHHhCChH
Q 010276          202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNN-------IHILLEMAKVDAIIGKND  266 (514)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-------~~~~~~la~~~~~~~~~~  266 (514)
                         .+  ....+.+...|+.|.++...|+|.+|++.++++++.        +.+.       ..+...++.++..+|+.+
T Consensus       167 ---v~--~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  167 ---VP--EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             ---cc--CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence               11  112446777899999999999999999999999432        1111       246778999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CChh-HHHHHHHHHhhcCCC----------ChHHHHHHHHHHhh-c
Q 010276          267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYS-KLSKLVHDLLSIDPS----------RPEVFVALSVLWER-K  330 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~-~  330 (514)
                      +|...|...++.+|.+........+-+...    .-++ .++..++......++          -..++.+.+.+... +
T Consensus       242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998887743322222111111    1111 111111111111111          01122222322222 3


Q ss_pred             ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHH-
Q 010276          331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAR-  407 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~-  407 (514)
                      .-+.+.+...+.-...|....-.............+..|...+....+..|..  .+...++.+.+.+|+++.|++.+. 
T Consensus       322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            33333333332222222222212222223333335666677776666666665  345566666677777777777666 


Q ss_pred             -------HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276          408 -------EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR-------LEPGYLGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       408 -------~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (514)
                             ...+. ...|.+...+-..+... ++.+.|...+.+++.       -.+.....+...+.+-.+.|+-++|..
T Consensus       402 ~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  402 FLESWKSSILEA-KHLPGTVGAIVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             Hhhhhhhhhhhh-ccChhHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence                   22222 12233333333333433 444444444444433       222223345556666666677777777


Q ss_pred             HHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHH
Q 010276          474 LLERYLKDWADD-SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       474 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~  505 (514)
                      .+++.++.+|++ ++...+...|... +.+.|.
T Consensus       480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~  511 (652)
T KOG2376|consen  480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE  511 (652)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence            777777766665 3555555554433 234443

>PLN02789 farnesyltranstransferase

Probab=99.85  E-value=9.8e-19  Score=153.88  Aligned_cols=222  Identities=11%  Similarity=0.054  Sum_probs=160.9

Q ss_pred             hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC--hhHHHH
Q 010276          262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD--ERGALS  337 (514)
Q Consensus       262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~A~~  337 (514)
                      .+++++|+..+.++++++|.+..+|...+.++...| ++++++..+.+++..+|++..+|...+.++.. ++  .++++.
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            456667777777777777777777777777777776 46777777777777777777777777766655 43  256677


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc---CCH----HHHHHHHHHH
Q 010276          338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF---SKV----KEALYAAREA  409 (514)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~----~~A~~~~~~~  409 (514)
                      +++++++.+|++..+|..++.++...|+++++++.+.++++.+|.+ .+|...+.+....   |.+    ++++.+..++
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a  209 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA  209 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence            7777888888888888888888877888888888888888887776 6777777776654   222    4677777788


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC------------------Ch
Q 010276          410 MKAMPQSAKALKLVGDVHASNA---SGREKAKKFYESALRLEPGYLGAALALAELHVIEG------------------RN  468 (514)
Q Consensus       410 ~~~~p~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------------------~~  468 (514)
                      +..+|++..+|..++.++....   +...+|+..+.+++..+|.++.++..|+.++....                  ..
T Consensus       210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (320)
T PLN02789        210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDS  289 (320)
T ss_pred             HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccH
Confidence            8888888888888888887620   44566888888888888888888888888887532                  23


Q ss_pred             hHHHHHHHHHHhhCC
Q 010276          469 GDAVSLLERYLKDWA  483 (514)
Q Consensus       469 ~~A~~~~~~~~~~~~  483 (514)
                      ++|..+++..-+.+|
T Consensus       290 ~~a~~~~~~l~~~d~  304 (320)
T PLN02789        290 TLAQAVCSELEVADP  304 (320)
T ss_pred             HHHHHHHHHHHhhCc
Confidence            567777777644444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.9e-16  Score=136.81  Aligned_cols=424  Identities=14%  Similarity=0.063  Sum_probs=301.4

Q ss_pred             hhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcC
Q 010276           80 NSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSR  155 (514)
Q Consensus        80 ~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g  155 (514)
                      +.-.+.--..+++...|...+   ......+..+++..+.+-++..+...|..++++. ..-|.....|+-....-...|
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            333333333444444444444   1123346778888888888989999999888884 334777888888888888889


Q ss_pred             ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH
Q 010276          156 HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL  235 (514)
Q Consensus       156 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  235 (514)
                      +..-|.+.|++-+...|+ ..+|......-....++..+-.-...    ....++...+|+.+   |..-...|+..-|.
T Consensus       156 Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYer----fV~~HP~v~~wiky---arFE~k~g~~~~aR  227 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYER----FVLVHPKVSNWIKY---ARFEEKHGNVALAR  227 (677)
T ss_pred             ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHH----HheecccHHHHHHH---HHHHHhcCcHHHHH
Confidence            999999999999988884 45665555554444444333222221    12223455566655   77778888888888


Q ss_pred             HHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCChh---HHH----
Q 010276          236 ELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYS---KLS----  303 (514)
Q Consensus       236 ~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~---~A~----  303 (514)
                      .+|+++++...++   ..++...|..-..+..++.|...|+-++..-|.+  ...+..+...--+-|+..   +++    
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            8998888765544   2344455666666778888888888888888877  334444444444445543   232    


Q ss_pred             -HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---------hHHHHHH-HHHhcCChHHHHH
Q 010276          304 -KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---------GYIMKGN-LLLSMKRPEAAVI  371 (514)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~A~~  371 (514)
                       -.|+..+..+|.+-++|+..-.+... |+.+.-.+.|++++..-|....         .|.+.+. .-....+.+.+.+
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence             23677788889898888887777666 8888888999999887665322         1222221 1245678888889


Q ss_pred             HHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          372 AFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       372 ~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      .|+.++++-|..     ..|...+....++.+...|.+.+-.++...|. ...+-....+-.++ ++++.....|++-++
T Consensus       388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL-~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQL-REFDRCRKLYEKFLE  465 (677)
T ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence            999999988874     46888888888899999999999999998888 44455555556666 889999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--h-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--S-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .+|.+..+|...|.+-..+|+.+.|..+|+-+++...-+  . .|-...+.-...|.++.|...|++.|+
T Consensus       466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888765332  3 666677777888999999999998775

>PLN02789 farnesyltranstransferase

Probab=99.82  E-value=1.5e-17  Score=146.51  Aligned_cols=232  Identities=12%  Similarity=0.043  Sum_probs=201.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh--h
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY--S  300 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~  300 (514)
                      ++...+++++|+..+.+++..+|++..+|..++.++...| ++++++..++++++.+|++..+|...+.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            3556789999999999999999999999999999999998 689999999999999999999999999999998874  7


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc---CCh----HHHHHH
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRP----EAAVIA  372 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~~  372 (514)
                      +++.++.++++.+|.+..+|...+.++.. |++++++.+++++++.+|.+..+|..++.+....   |.+    ++++.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            88999999999999999999999998888 9999999999999999999999999999998776   333    478888


Q ss_pred             HHHhHhhcCCh-HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---------------
Q 010276          373 FRGAQELRPDL-RSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS---------------  432 (514)
Q Consensus       373 ~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---------------  432 (514)
                      ..+++..+|++ .+|..++.++..    .++..+|...+.+++...|.++.++..++.++.....               
T Consensus       206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~  285 (320)
T PLN02789        206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE  285 (320)
T ss_pred             HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence            88999999999 889999999988    4566789999999999999999999999999986311               


Q ss_pred             --ChHHHHHHHHHHHhhCCCChHHH
Q 010276          433 --GREKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       433 --~~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                        ..++|...++..-+.+|=....|
T Consensus       286 ~~~~~~a~~~~~~l~~~d~ir~~yw  310 (320)
T PLN02789        286 LSDSTLAQAVCSELEVADPMRRNYW  310 (320)
T ss_pred             cccHHHHHHHHHHHHhhCcHHHHHH
Confidence              23567777776655555443333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.81  E-value=2.7e-16  Score=145.51  Aligned_cols=307  Identities=15%  Similarity=0.052  Sum_probs=198.4

Q ss_pred             CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276          137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL  216 (514)
Q Consensus       137 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (514)
                      +|+.+.++..+|.++...|+.+.+...+.++.+..|.+.....                                     
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-------------------------------------   44 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERE-------------------------------------   44 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHH-------------------------------------
Confidence            4777888888888888888888888888888877775432221                                     


Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh----HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN----DEAILNFEKVRSIDPYIMTYMDEYAML  292 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~  292 (514)
                      ..+..+..+...|++++|...+++++..+|++..++.. +..+...|++    ..+.+.+......+|........+|.+
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            12345777888888888888888888888888766654 4455444443    344444433334556666677777888


Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch----hHHHHHHHHHhcCChH
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP----GYIMKGNLLLSMKRPE  367 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  367 (514)
                      +...|++++|...++++++..|+++..+..+|.++.. |++++|+.++++++...|..+.    .+..+|.++...|+++
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            8888888888888888888888888888888877766 8888888888888877664332    3456788888888888


Q ss_pred             HHHHHHHHhHhhcCCh--HHHH----HHHHHHHhcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHhcCCChHH
Q 010276          368 AAVIAFRGAQELRPDL--RSYQ----GLVHSYLQFSKVKEALYA--A-REAMKAMPQ--SAKALKLVGDVHASNASGREK  436 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~~~A~~~--~-~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~  436 (514)
                      +|+..|++++...|..  ....    .+...+...|....+...  . .......|.  ........+.++... |+.++
T Consensus       204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~  282 (355)
T cd05804         204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDA  282 (355)
T ss_pred             HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHH
Confidence            8888888876655522  1111    222222333322222222  1 111111111  112223455666666 77777


Q ss_pred             HHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          437 AKKFYESALRLEPG---------YLGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       437 A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      |...++........         ...+....+.++...|++++|...+..++...
T Consensus       283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            77777766543211         13355667777778888888888888777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.81  E-value=4e-16  Score=144.37  Aligned_cols=300  Identities=12%  Similarity=-0.027  Sum_probs=223.7

Q ss_pred             chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                      |+..+.++.+|..+...|+.+.+...+.++....|.+   .+.....+.++...|++++|...++++++.+|.+..++..
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4445555666888888899999999999988876644   5677788999999999999999999999999999877765


Q ss_pred             HHHHHHHhCC----hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276          289 YAMLLKVKCD----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM  363 (514)
Q Consensus       289 l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                       +..+...|+    ...+.+.+.......|........+|.++.. |++++|...++++++..|+++..+..+|.++...
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence             555555544    4444444444334566666677777777777 9999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHH---HHHHHhcCCC
Q 010276          364 KRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLV---GDVHASNASG  433 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l---~~~~~~~~~~  433 (514)
                      |++++|+..+++++...|..     ..+..++.++...|++++|+..+++++...|.  ........   ...+... |.
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~  240 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GH  240 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CC
Confidence            99999999999999987643     24678999999999999999999999876662  22211111   2222222 43


Q ss_pred             hHHHHHH--H-HHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC----------chHHHHHHHHHHHh
Q 010276          434 REKAKKF--Y-ESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----------DSLHVKLAQVFAAT  498 (514)
Q Consensus       434 ~~~A~~~--~-~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~  498 (514)
                      ...+..+  . .......|.  ........+.++...|+.++|...++........          ..+....+.++...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3333333  1 111111122  2233346888889999999999999887664422          13667778999999


Q ss_pred             ccHHHHHHHHHHHhc
Q 010276          499 NMLQEALSHYEAALR  513 (514)
Q Consensus       499 g~~~~A~~~~~~al~  513 (514)
                      |++++|.+.+..++.
T Consensus       321 g~~~~A~~~L~~al~  335 (355)
T cd05804         321 GNYATALELLGPVRD  335 (355)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.79  E-value=4.8e-17  Score=149.41  Aligned_cols=237  Identities=22%  Similarity=0.261  Sum_probs=164.7

Q ss_pred             hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC--
Q 010276          244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID--  313 (514)
Q Consensus       244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--  313 (514)
                      ..|.-..+...++..|...|+++.|+..++.+++.        .|.-......+|.+|..++++.+|+.+|++++.+.  
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34555566666777777777777777777777776        33334444457777777777777777777776541  


Q ss_pred             ---CCC---hHHHHHHHHHHhh-cChhHHHHHHHHHHHhc--------ccCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276          314 ---PSR---PEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       314 ---~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                         +++   ..++.+|+.+|.. |++++|..++++++++.        |.-...+..++.++..++++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence               222   3456666666655 77777777777776653        22334567788888888888888888888877


Q ss_pred             hcC-----Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276          379 LRP-----DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       379 ~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                      +.-     ++    ..+.++|.+|..+|++++|.+++++++.+.        +.....+..+|..+.+. +.+.+|...|
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~~~a~~l~  432 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKYEEAEQLF  432 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cccchHHHHH
Confidence            631     22    347788888888888888888888888754        22355677788888777 8888888888


Q ss_pred             HHHHhh----C---CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          442 ESALRL----E---PGYLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       442 ~~a~~~----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      .++..+    .   |+....+.+|+.+|..+|++++|+++.++++..
T Consensus       433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            877654    2   333457778888888888888888888887743

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.79  E-value=6.5e-17  Score=148.56  Aligned_cols=235  Identities=17%  Similarity=0.124  Sum_probs=196.7

Q ss_pred             hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh---
Q 010276          278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI---  345 (514)
Q Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~---  345 (514)
                      .+|....+...++..|...|+++.|...++.++..        .|.-......+|.+|.. +++.+|+..|++++.+   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35666777888999999999999999999999987        33334445557888888 9999999999999986   


Q ss_pred             -----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-----h----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          346 -----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----L----RSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       346 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                           +|....++.++|.+|...|++++|..++++++++...     .    ..+..++.++...+++++|..+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                 3444567899999999999999999999999887322     1    3478899999999999999999999987


Q ss_pred             hC-----C---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276          412 AM-----P---QSAKALKLVGDVHASNASGREKAKKFYESALRLE--------PGYLGAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       412 ~~-----p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      +.     +   .-+....++|.+|... |++++|.++|++++...        +.....+..+|..+.+.+++.+|...|
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~  432 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF  432 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence            53     2   2367789999999999 99999999999999863        233457889999999999999999999


Q ss_pred             HHHHhhC----CCc----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          476 ERYLKDW----ADD----SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       476 ~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ..+..+.    |+.    ..+.+|+.+|..+|++++|+++-++++.
T Consensus       433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9988764    332    3899999999999999999999888763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.78  E-value=1.8e-15  Score=141.09  Aligned_cols=292  Identities=14%  Similarity=0.117  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      .+.++.++...|++++|++.+++....-++...+.-..|.++..+|++++|...|...++.+|++...+..+..+.....
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence            34568888999999999999999988889999999999999999999999999999999999999999999888874433


Q ss_pred             -----ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH
Q 010276          298 -----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV  370 (514)
Q Consensus       298 -----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  370 (514)
                           ..+.-..+|++.....|....+.... ..+.. ..+. .+..++...+..  .-|.....+-.+|....+..-..
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhHhh-cccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence                 56777888888888887754432221 11112 3344 344455555443  34556666666665444433333


Q ss_pred             HHHHHhHhh----------------cCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 010276          371 IAFRGAQEL----------------RPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS  432 (514)
Q Consensus       371 ~~~~~~~~~----------------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  432 (514)
                      .++......                .|..  .+++.++..|...|++++|+.++++++...|..++.+...|.++... |
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G  242 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-G  242 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-C
Confidence            333333211                1222  35688899999999999999999999999999999999999999998 9


Q ss_pred             ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------h-HHHH--HHHHHHHhccHH
Q 010276          433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------S-LHVK--LAQVFAATNMLQ  502 (514)
Q Consensus       433 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~-~~~~--l~~~~~~~g~~~  502 (514)
                      ++.+|...++.+..+++.+-.+....+..+.+.|+.++|.+.+....+.+.+.       + +|+.  .|.+|.+.|++.
T Consensus       243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999998899999999999999999999999886655221       2 5554  499999999999


Q ss_pred             HHHHHHHHHhc
Q 010276          503 EALSHYEAALR  513 (514)
Q Consensus       503 ~A~~~~~~al~  513 (514)
                      .|++.|..+.+
T Consensus       323 ~ALk~~~~v~k  333 (517)
T PF12569_consen  323 LALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=4.2e-15  Score=122.05  Aligned_cols=392  Identities=13%  Similarity=0.054  Sum_probs=267.0

Q ss_pred             HHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276            7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS   86 (514)
Q Consensus         7 ~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   86 (514)
                      .+..++....|..++.+...-....+        ..-..+..+|.+|+...+|..|..+|++.-...|            
T Consensus        16 viy~lI~d~ry~DaI~~l~s~~Er~p--------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P------------   75 (459)
T KOG4340|consen   16 VVYRLIRDARYADAIQLLGSELERSP--------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP------------   75 (459)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh------------
Confidence            35567888889988886554333211        1233678899999999999999999999888866            


Q ss_pred             hhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276           87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA-RNLQMSLLMAKLYRNSRHNRGAVACYK  165 (514)
Q Consensus        87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~  165 (514)
                                         .....++.-+..+++.+.+.+|+.....+...+ -..+..-+-+-+.+..+++..+....+
T Consensus        76 -------------------~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve  136 (459)
T KOG4340|consen   76 -------------------ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE  136 (459)
T ss_pred             -------------------HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence                               344456667788888888888888887775542 234445555666777777777766555


Q ss_pred             HHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 010276          166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF  245 (514)
Q Consensus       166 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  245 (514)
                      +.-..+  ....                                        ....|...++.|+++.|++-|+.+++..
T Consensus       137 Qlp~en--~Ad~----------------------------------------~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  137 QLPSEN--EADG----------------------------------------QINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             hccCCC--ccch----------------------------------------hccchheeeccccHHHHHHHHHHHHhhc
Confidence            532111  1111                                        1223777788899999999999999888


Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHHh
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYI-------------------------MTYMDEYAMLLKVK  296 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~  296 (514)
                      .-++-+-+.++.++++.|+++.|+++..++++.    .|..                         .+++...+.++++.
T Consensus       175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~  254 (459)
T KOG4340|consen  175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL  254 (459)
T ss_pred             CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence            888888889999999999999999888777654    2321                         34566778889999


Q ss_pred             CChhHHHHHHHHHhhcC--CCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSID--PSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                      |+++.|.+.+..+-...  .-+|..+.+++..-..+++.+...-+.-.+.++|-.++.+-++-.+|++..-|+.|...+-
T Consensus       255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            99999987654432221  1247788888877777889999999999999999878888888899999888888877654


Q ss_pred             HhHhhcCCh------HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----ChHHHHHHHHH
Q 010276          375 GAQELRPDL------RSYQGLVHSYL-QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----GREKAKKFYES  443 (514)
Q Consensus       375 ~~~~~~~~~------~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~~A~~~~~~  443 (514)
                      +    +|+.      +..+.+-..+. .+-..++|.+-+...-...-+  .....-..+......    ....|++.|++
T Consensus       335 E----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~--kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~  408 (459)
T KOG4340|consen  335 E----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE--KLRKLAIQVQEARHNRDDEAIRKAVNEYDE  408 (459)
T ss_pred             h----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3    3442      22334433333 344666666655554322111  011111112111101    12445566666


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276          444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH  488 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  488 (514)
                      ++++.   ..+....+++++...+|..+.+.|....+...++.+|
T Consensus       409 ~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W  450 (459)
T KOG4340|consen  409 TLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW  450 (459)
T ss_pred             HHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence            66653   5677889999999999999999999999888776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=2.9e-15  Score=125.90  Aligned_cols=378  Identities=15%  Similarity=0.074  Sum_probs=267.0

Q ss_pred             hhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHH
Q 010276           51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE  130 (514)
Q Consensus        51 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  130 (514)
                      +-+....||..|+..++-.+..+..                              ....+...+|.|++.+|+|++|+..
T Consensus        30 edfls~rDytGAislLefk~~~~~E------------------------------EE~~~~lWia~C~fhLgdY~~Al~~   79 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDRE------------------------------EEDSLQLWIAHCYFHLGDYEEALNV   79 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchh------------------------------hhHHHHHHHHHHHHhhccHHHHHHH
Confidence            3456778999999999887754321                              2345777899999999999999999


Q ss_pred             HhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc
Q 010276          131 MEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH  209 (514)
Q Consensus       131 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (514)
                      ++.+... ..+.+.+..++.+++-.|.|.+|...-.+    .|+++-....+.                           
T Consensus        80 Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlf---------------------------  128 (557)
T KOG3785|consen   80 YTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLF---------------------------  128 (557)
T ss_pred             HHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHH---------------------------
Confidence            9986444 56778899999999999999999875544    466555444332                           


Q ss_pred             CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                                   ....+.++-++-...-+.+-    +..+-...+|.+++..-.|.+|++.|.+++..+|+....-..+
T Consensus       129 -------------hlahklndEk~~~~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~  191 (557)
T KOG3785|consen  129 -------------HLAHKLNDEKRILTFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM  191 (557)
T ss_pred             -------------HHHHHhCcHHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence                         22233344444433333332    2235566788888888999999999999999999998888999


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---cChhHH----------------HHHHH----------
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGA----------------LSYAE----------  340 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A----------------~~~~~----------  340 (514)
                      +.+|.+..-++-+.+++.-.+...|+++-+....+....+   |+..++                ...++          
T Consensus       192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE  271 (557)
T KOG3785|consen  192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE  271 (557)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence            9999999999999999999999999998887776654443   333221                11111          


Q ss_pred             HHHHhccc----CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH---Hhh
Q 010276          341 KSIRIDER----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA---MKA  412 (514)
Q Consensus       341 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~  412 (514)
                      .+++.-|.    -|++..++...|.++++..+|+...+.   ++|.. .-+...|.+....|+--...+.++-+   +.+
T Consensus       272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql  348 (557)
T KOG3785|consen  272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL  348 (557)
T ss_pred             cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence            12222222    356678888888999999998887765   46665 44666677777777654444443333   222


Q ss_pred             CC------CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          413 MP------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       413 ~p------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      -.      +.......++.+++-. .++++.+.++...-...-++....++++......|++.+|.+.|-+.-...-.+.
T Consensus       349 VG~Sa~ecDTIpGRQsmAs~fFL~-~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~  427 (557)
T KOG3785|consen  349 VGESALECDTIPGRQSMASYFFLS-FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK  427 (557)
T ss_pred             hcccccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence            21      2233345566666665 7888888888776666667778889999999999999999999887644332333


Q ss_pred             --HHHHHHHHHHHhccHHHHHHHHHH
Q 010276          487 --LHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       487 --~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                        ....++.||...|+++-|-+.|-+
T Consensus       428 ~~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  428 ILYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHh
Confidence              556789999999999888877643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.75  E-value=4.3e-14  Score=121.23  Aligned_cols=291  Identities=17%  Similarity=0.096  Sum_probs=229.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKC  297 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  297 (514)
                      ...|..-+..|+|.+|.....+.-+..+...-.+..-+...-..|+.+.|-.++.++-+..++ ........+.++...|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            345777788899999999999987777766667777788999999999999999999998444 3567788999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---hHHHHHH--HHHhcCChHHHH-
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---GYIMKGN--LLLSMKRPEAAV-  370 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~A~-  370 (514)
                      +++.|..-..++++..|.++.+......+|.. |++.....++.+.-+..--+..   -+-..+.  ++.+.++-..+. 
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            99999999999999999999999999999988 9999999888887664332221   1111111  122222222222 


Q ss_pred             --HHHHHhHhhcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          371 --IAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       371 --~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                        .+++..-..-.. ......++.-+...|+.++|.+..+++++..-+.. ....++.+  . .++...=++..++.++.
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~-~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--R-PGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--C-CCCchHHHHHHHHHHHh
Confidence              233332222112 24567778888999999999999999998765533 33333322  2 28888999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .|++|..+..||.++.+.+.+.+|..+|+.+++..|+...+..+|.++.+.|+..+|.+.++.++.
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999873

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.73  E-value=9.9e-14  Score=119.06  Aligned_cols=299  Identities=17%  Similarity=0.075  Sum_probs=229.4

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      ..+.....-|-.-+..|+|.+|.+...++-+..+                               .+.-.+..-++.--.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e-------------------------------~p~l~~l~aA~AA~q  130 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE-------------------------------QPVLAYLLAAEAAQQ  130 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-------------------------------chHHHHHHHHHHHHh
Confidence            3345566667777888999999999988665532                               233344455677778


Q ss_pred             cCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276          121 LGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT  198 (514)
Q Consensus       121 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  198 (514)
                      .|+++.|-.++.++.+.  ..+......++++....|+++.|.....++++..|.++.+....                 
T Consensus       131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa-----------------  193 (400)
T COG3071         131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA-----------------  193 (400)
T ss_pred             cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH-----------------
Confidence            99999999999997555  45666778889999999999999999999999999999888654                 


Q ss_pred             CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHH--HHHHHHH--HHHhCC---hHHHHH
Q 010276          199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHI--LLEMAKV--DAIIGK---NDEAIL  270 (514)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~--~~~la~~--~~~~~~---~~~A~~  270 (514)
                                             ..+|...|++.....++.++.+..--+ .+.  +-..+..  +-+.++   .+.-..
T Consensus       194 -----------------------~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         194 -----------------------LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             -----------------------HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence                                   677888899998888888887643322 111  1111111  112222   222233


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCc
Q 010276          271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHI  350 (514)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~  350 (514)
                      +++..-..-..++.....++.-+...|+.++|.++.+.+++..-+..  +..+.-...-++...=++..++.++..|++|
T Consensus       251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            55555444455678888999999999999999999999998654433  2222222333888899999999999999999


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA  412 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  412 (514)
                      ..+..+|..+++.+.|.+|..+|+.+++..|+...+..+|.++.++|+..+|.+..++++..
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998853

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.72  E-value=1.3e-13  Score=128.71  Aligned_cols=302  Identities=17%  Similarity=0.110  Sum_probs=203.4

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276          107 ENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG  185 (514)
Q Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  185 (514)
                      ..++.+..+.++...|++++|+..+++.... .+.....-..|.++.+.|++++|...|+..++.+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            4677788889999999999999999986444 677888899999999999999999999999999999999998885543


Q ss_pred             cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh
Q 010276          186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN  265 (514)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  265 (514)
                      ....                                   -....+.+.-..+|++.....|....... +...+..-..+
T Consensus        83 g~~~-----------------------------------~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F  126 (517)
T PF12569_consen   83 GLQL-----------------------------------QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEF  126 (517)
T ss_pred             hhhc-----------------------------------ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHH
Confidence            1110                                   01113455666777777777776532221 11111111122


Q ss_pred             H-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc---------------CCCCh--HHHHHHHHHH
Q 010276          266 D-EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI---------------DPSRP--EVFVALSVLW  327 (514)
Q Consensus       266 ~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~--~~~~~l~~~~  327 (514)
                      . .+..++...+..  .-|.....+-.+|....+..-...++......               .|...  .+++.++..+
T Consensus       127 ~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy  204 (517)
T PF12569_consen  127 KERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY  204 (517)
T ss_pred             HHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence            2 233333333332  23344444444444333332223333332211               11111  3446667777


Q ss_pred             hh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHH-HHHHHHHHHhcCCHHHHHHH
Q 010276          328 ER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYA  405 (514)
Q Consensus       328 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~  405 (514)
                      .. |++++|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.++. -...+..+++.|+.++|...
T Consensus       205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            66 88889999999999999998888999999999999999999999999888888844 44557778888899998888


Q ss_pred             HHHHHhhC--CCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          406 AREAMKAM--PQS-------AKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       406 ~~~~~~~~--p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      +......+  |..       .+.....|.+|.+. |++..|++.|..+.+.
T Consensus       285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-GDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            87765543  211       23335678888887 8888888888877764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.71  E-value=3.2e-15  Score=129.21  Aligned_cols=186  Identities=17%  Similarity=0.107  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---h
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---G  352 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~  352 (514)
                      +..+..++.+|..+...|++++|+..+++++...|+++   .+++.+|.++.. |++++|+..++++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            33455566666666666666666666666666555544   344555555544 5555555555555555555444   3


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          353 YIMKGNLLLSM--------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       353 ~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                      ++.+|.++...        |++++|+..|++++..+|++ .++..+..+...    ...             .......+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~  172 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYV  172 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHH
Confidence            45555555443        44445555555555444443 111111100000    000             01112344


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          424 GDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      |.++... |++.+|+..++++++..|+.   +.+++.+|.++...|++++|..+++......|
T Consensus       173 a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       173 ARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4555554 55555555555555554432   24555555555555555555555555444433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.9e-13  Score=118.64  Aligned_cols=362  Identities=15%  Similarity=0.061  Sum_probs=207.3

Q ss_pred             ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHH
Q 010276          103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALA  182 (514)
Q Consensus       103 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  182 (514)
                      ..|++.++......+++..++|++|+.+.+.-..........+..+.|.++.++.++|+..++   ..++.+...     
T Consensus        41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l-----  112 (652)
T KOG2376|consen   41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL-----  112 (652)
T ss_pred             cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHH-----
Confidence            346777777778888888888888886666533222222233677888888888888888877   233332222     


Q ss_pred             HhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 010276          183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII  262 (514)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  262 (514)
                                                         ..+.|.++++.|+|++|+.+|+.+.+.+.++.+............
T Consensus       113 -----------------------------------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a  157 (652)
T KOG2376|consen  113 -----------------------------------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA  157 (652)
T ss_pred             -----------------------------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence                                               234588888899999999999888765444432222111111000


Q ss_pred             CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCCh-------HHHHHHHHH
Q 010276          263 GKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRP-------EVFVALSVL  326 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~-------~~~~~l~~~  326 (514)
                      .  ..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++.+        +.+..       .+...++.+
T Consensus       158 ~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  158 A--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             h--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence            0  000 0 1111122222 3344455555555555555555555554211        00100       112222322


Q ss_pred             Hhh-cChhHHHHHHHHHHHhcccCch-------------------------------------------------hHHHH
Q 010276          327 WER-KDERGALSYAEKSIRIDERHIP-------------------------------------------------GYIMK  356 (514)
Q Consensus       327 ~~~-~~~~~A~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~  356 (514)
                      +.. |+..+|...|...++.+|.+..                                                 ++.+.
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~  313 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN  313 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            222 5555555555555554443322                                                 23334


Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCh
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGR  434 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~  434 (514)
                      +.+.+..+.-+.+.+.....-...|.... -........+...+.+|.+++....+.+|.+ ..+...++.+.... |++
T Consensus       314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~  392 (652)
T KOG2376|consen  314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNP  392 (652)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH
Confidence            44444444444444444443333444411 1122222223336889999999999999987 66778888888888 999


Q ss_pred             HHHHHHHHHH--------HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC----c----hHHHHHHHHHHHh
Q 010276          435 EKAKKFYESA--------LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----D----SLHVKLAQVFAAT  498 (514)
Q Consensus       435 ~~A~~~~~~a--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~----~~~~~l~~~~~~~  498 (514)
                      +.|++.+...        .+.. ..|.+.-.+-.++++.++.+.|...+..++.....    .    ..+...+.+-.+.
T Consensus       393 ~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~  471 (652)
T KOG2376|consen  393 EVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH  471 (652)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence            9999999833        3322 23555566677778888888888888887765421    1    3666678888888


Q ss_pred             ccHHHHHHHHHHHhc
Q 010276          499 NMLQEALSHYEAALR  513 (514)
Q Consensus       499 g~~~~A~~~~~~al~  513 (514)
                      |+.++|...+++.++
T Consensus       472 G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  472 GNEEEASSLLEELVK  486 (652)
T ss_pred             CchHHHHHHHHHHHH
Confidence            999999999998764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.70  E-value=6.5e-15  Score=127.31  Aligned_cols=187  Identities=20%  Similarity=0.138  Sum_probs=119.8

Q ss_pred             chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---H
Q 010276          212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---Y  285 (514)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~  285 (514)
                      +.....++..|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            44455667778888888888888888888888888765   57788888888888888888888888888887765   6


Q ss_pred             HHHHHHHHHHh--------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276          286 MDEYAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKG  357 (514)
Q Consensus       286 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                      ++.+|.++...        |++++|++.+++++..+|+++..+..+..+...   ..             ........+|
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~---~~-------------~~~~~~~~~a  173 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL---RN-------------RLAGKELYVA  173 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH---HH-------------HHHHHHHHHH
Confidence            77778877765        566666666666666666665444332221110   00             0011123455


Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP  414 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  414 (514)
                      ..+...|++.+|+..++++++..|+.    .++..+|.++...|++++|..+++.+....|
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            55566666666666666666555432    3455555566556666655555555544443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=1.3e-15  Score=118.77  Aligned_cols=122  Identities=15%  Similarity=0.021  Sum_probs=68.0

Q ss_pred             HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      ..++++++.+|+.  +..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..|++++.++|+
T Consensus        14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence            3455555555553  334455555555555555555555555555555555555555555 5555555555555555555


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF  495 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~  495 (514)
                      ++.+++.+|.++...|++++|+..|+++++..|++. .+..++.+.
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            555555555555555555555555555555555543 444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=1.2e-15  Score=119.08  Aligned_cols=126  Identities=11%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276          336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP  414 (514)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  414 (514)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+ .+|..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46788888888875   5678999999999999999999999999988 8899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +++.+++.+|.++... |++++|+..|+++++..|+++..+..++.+....
T Consensus        90 ~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999998 9999999999999999999999988888776543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.67  E-value=1.3e-12  Score=136.31  Aligned_cols=366  Identities=15%  Similarity=0.060  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      .++...+..+...|++.+|+.........+.........+......|++..+...+..+    |....            
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l----p~~~~------------  405 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL----PWEVL------------  405 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC----CHHHH------------
Confidence            34445566666777777777766665433333344444556666666666554444332    11000            


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHH
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN---------NIHILLEMAKVD  259 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~  259 (514)
                                          ..++.   .....+..+...|++++|...+..+....+.         .......++.++
T Consensus       406 --------------------~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        406 --------------------LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             --------------------hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence                                00010   1123466667788888888888877654221         133445567788


Q ss_pred             HHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHh
Q 010276          260 AIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWE  328 (514)
Q Consensus       260 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~  328 (514)
                      ...|++++|...+++++...|..     ..+...+|.++...|++++|...+.+++......      ...+..++.++.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            88899999999998888754432     1345667888888999999998888887653321      123445566555


Q ss_pred             h-cChhHHHHHHHHHHHhccc--------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC----Ch--HHHHHHHHHH
Q 010276          329 R-KDERGALSYAEKSIRIDER--------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP----DL--RSYQGLVHSY  393 (514)
Q Consensus       329 ~-~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~l~~~~  393 (514)
                      . |++++|...+++++.....        ....+..+|.++...|++++|...+.+++....    ..  ..+..++.++
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            5 8999999988888775322        112345678888888999999999888876532    11  3456678888


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHhcCCChHHHHHHHHHHHhhCCCChH----HHHHHHHHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQS---AKALK----LVGDVHASNASGREKAKKFYESALRLEPGYLG----AALALAELH  462 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~----~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~  462 (514)
                      ...|++++|...+.++....+..   .....    .....+... |+.+.|...+.......+....    .+..++.++
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT-GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC-CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            89999999999888887653321   11111    112333444 8888888887765543322221    245788888


Q ss_pred             HHcCChhHHHHHHHHHHhhCCC-----c--hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          463 VIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       463 ~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      ...|++++|...+++++.....     .  .++..+|.++...|+.++|...+.+++++
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8999999999999988876322     1  36777889999999999999999988763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=2.3e-14  Score=115.03  Aligned_cols=182  Identities=17%  Similarity=0.122  Sum_probs=149.5

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      .++.|..+-....+.+..|+.+-|..+++++....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            45556655555677778888889999999888888988888888888888899999999999999998998888888888


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC---Ch
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK---RP  366 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  366 (514)
                      .+...+|+.-+|++.+...++.++.++++|..++.+|.. |+|++|.-++++++-+.|.++..+..+|.+++.+|   +.
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            888888888888888888888888888888888888888 88888888888888888888888888888887766   45


Q ss_pred             HHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276          367 EAAVIAFRGAQELRPDL-RSYQGLVHS  392 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~  392 (514)
                      +.|.++|.++++++|.+ .+++.+-.+
T Consensus       208 ~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            67788888888888854 666555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.66  E-value=1.1e-10  Score=106.33  Aligned_cols=492  Identities=13%  Similarity=0.092  Sum_probs=303.8

Q ss_pred             HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276            5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS   84 (514)
Q Consensus         5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   84 (514)
                      +.-++.++.+|+........+..|...+      -..+-..|-..-...-..|-.+-++..|++-++..|....-+.   
T Consensus       106 l~Ylq~l~~Q~~iT~tR~tfdrALraLp------vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---  176 (835)
T KOG2047|consen  106 LDYLQFLIKQGLITRTRRTFDRALRALP------VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---  176 (835)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCc------hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---
Confidence            3445556666666655554444433221      1122223333334445566677888888888888876633322   


Q ss_pred             hhhhhccccCCCCccccc----------ccCChhHHHHHHHHHHHhcCCHHHH---HHHHhc-CCCC-CccHHHHHHHHH
Q 010276           85 RSSLSTSNRSSSPNSFNV----------SAINENEVKYKIASCHFALGETKAA---IVEMEG-IPSK-ARNLQMSLLMAK  149 (514)
Q Consensus        85 ~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A---~~~~~~-~~~~-~~~~~~~~~l~~  149 (514)
                      ......++..++.+.+..          ..+.+...+..+.....+.-+.-..   -.++.. +..- ..-...|..||.
T Consensus       177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD  256 (835)
T ss_pred             HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence            222233444444433311          1122333444444433332221111   122332 1111 234556788999


Q ss_pred             HHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHh---------c------cCcc---cHhHHHhccCCcCCCCC--
Q 010276          150 LYRNSRHNRGAVACYKECLRHCP---FFIEAITALAEL---------G------ATPK---DIISLFAQTPNRSGRAP--  206 (514)
Q Consensus       150 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~---------~------~~~~---~~~~~~~~~~~~~~~~~--  206 (514)
                      .|.+.|.+++|...|++++..--   +...++...+..         .      .+.+   +++-.+.....+..+.+  
T Consensus       257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~  336 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL  336 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence            99999999999999999986542   222222211111         0      0000   00111111111111111  


Q ss_pred             -------CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCc-----HHHHHHHHHHHHHhCChHHHHHHHH
Q 010276          207 -------FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNN-----IHILLEMAKVDAIIGKNDEAILNFE  273 (514)
Q Consensus       207 -------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~  273 (514)
                             .++.....|.     -.+-+..|+..+-+..|.++++ .+|..     ..+|...|..|...|+.+.|...|+
T Consensus       337 lNsVlLRQn~~nV~eW~-----kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife  411 (835)
T KOG2047|consen  337 LNSVLLRQNPHNVEEWH-----KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE  411 (835)
T ss_pred             HHHHHHhcCCccHHHHH-----hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence                   1111122222     2344566888888999998886 45543     4688999999999999999999999


Q ss_pred             HHHhhCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC------------------ChHHHHHHHHHHhh-c
Q 010276          274 KVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------------------RPEVFVALSVLWER-K  330 (514)
Q Consensus       274 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~-~  330 (514)
                      ++.+..-..    ..+|...|..-....+++.|.++.+++......                  +..+|...+.+... |
T Consensus       412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g  491 (835)
T KOG2047|consen  412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG  491 (835)
T ss_pred             HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence            999864332    568899999999999999999999998764322                  12345555555555 8


Q ss_pred             ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHH---HHHHHhcCCHHHHHH
Q 010276          331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGL---VHSYLQFSKVKEALY  404 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l---~~~~~~~~~~~~A~~  404 (514)
                      -++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.|-.   +.|...   ...-......+.|..
T Consensus       492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd  571 (835)
T KOG2047|consen  492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD  571 (835)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            88888999999999988889999999999999999999999999999986543   555433   222334458899999


Q ss_pred             HHHHHHhhCCCC-H-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----CChhHHHHHHHHH
Q 010276          405 AAREAMKAMPQS-A-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERY  478 (514)
Q Consensus       405 ~~~~~~~~~p~~-~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~  478 (514)
                      +|+++++..|.. . .++...+..-... |-...|+..|+++-..-+.  .-.+.+-.+|.+.    =-...-..+|+++
T Consensus       572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~-GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yGv~~TR~iYeka  648 (835)
T KOG2047|consen  572 LFEQALDGCPPEHAKTIYLLYAKLEEEH-GLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYGVPRTREIYEKA  648 (835)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence            999999987742 2 3445556666666 8888999999997664332  2222333333221    1134557888999


Q ss_pred             HhhCCCc---hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          479 LKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       479 ~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ++.-|+.   ......+..-.+.|..+.|...|.-+-+
T Consensus       649 Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  649 IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            9988886   3666778888899999999988875543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.64  E-value=6.6e-12  Score=131.17  Aligned_cols=340  Identities=13%  Similarity=0.037  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----HHHHHHHHH
Q 010276          110 VKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF----IEAITALAE  183 (514)
Q Consensus       110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~  183 (514)
                      .....+......|++..+...++.++..  ..++......+.++...|++++|...+..+....+..    ....     
T Consensus       376 ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~-----  450 (903)
T PRK04841        376 ILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL-----  450 (903)
T ss_pred             HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-----
Confidence            3445667777889999888888877432  3445566778888899999999999998886543221    0000     


Q ss_pred             hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 010276          184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKV  258 (514)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~  258 (514)
                                                    ........+.++...|++++|...+++++...|..     ..+...+|.+
T Consensus       451 ------------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        451 ------------------------------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             ------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence                                          01112234777888999999999999998754443     2355678888


Q ss_pred             HHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC--------ChHHHHHHH
Q 010276          259 DAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--------RPEVFVALS  324 (514)
Q Consensus       259 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~  324 (514)
                      +...|++++|...+++++......      ..++..++.++...|++++|...+++++.....        ....+..++
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            999999999999999998753321      245677899999999999999999988775221        122344556


Q ss_pred             HHHhh-cChhHHHHHHHHHHHhccc-----CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHH-----HHHH
Q 010276          325 VLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSY-----QGLV  390 (514)
Q Consensus       325 ~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----~~l~  390 (514)
                      .++.. |++++|...+.+++.....     ....+..+|.++...|++++|...+.++....+..   ..+     ....
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            55555 9999999999998875332     23445668889999999999999999987753321   111     1122


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHH
Q 010276          391 HSYLQFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAE  460 (514)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~  460 (514)
                      ..+...|+.+.|...+.......+...    ..+..++.++... |++++|...+++++....      ....++..+|.
T Consensus       661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            445568899999998877654332222    2246788889988 999999999999987521      22347788999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          461 LHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       461 ~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ++...|+.++|...+.++++.....
T Consensus       740 a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999987654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.63  E-value=8.2e-14  Score=113.22  Aligned_cols=175  Identities=17%  Similarity=0.103  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276          302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  380 (514)
                      +...+-.....+|++..+ ..++..+.. |+-+.+..+..++...+|.+.......|......|++..|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            555555556667777777 555554444 777777777777777777777666667777777777777777777777777


Q ss_pred             CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      |++ ..|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-. |+++.|..++..+....+.+..+..+++
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLA  209 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLA  209 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            776 67777777777777777777777777777777777777777777776 7777777777777777776777777777


Q ss_pred             HHHHHcCChhHHHHHHHHH
Q 010276          460 ELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~~  478 (514)
                      .+....|++++|..+..+-
T Consensus       210 l~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         210 LVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHhhcCChHHHHhhcccc
Confidence            7777777777777665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=5.7e-12  Score=101.54  Aligned_cols=185  Identities=18%  Similarity=0.154  Sum_probs=131.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276          279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG  357 (514)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                      .|+....+-....+....|+.+-|..+++++....|+++.+....|..+.. |++++|+++|+..++-+|.+..++...-
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            334444555556666667777777777777777777777777666666666 7777777777777777777777777766


Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--Ch
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GR  434 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~  434 (514)
                      .+...+|+.-+|++.+...++..+.+ ++|..++.+|...|++++|.-++++++-+.|.++..+..+|.++...+|  +.
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            67777777777777777777777776 7777777777777777777777777777777777777777777766522  34


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          435 EKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      .-|.++|.++++++|.+..+++.+-.+..
T Consensus       208 ~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence            67777888888888777666666554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.62  E-value=1.3e-13  Score=111.99  Aligned_cols=172  Identities=17%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276          268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID  346 (514)
Q Consensus       268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~  346 (514)
                      +...+-.....+|.+..+ ..++..+...|+-+.+..+..++....|.+.......|..... |++.+|+..+.++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            333333334444444444 4445555555555555555544444445554444444444443 55555555555555555


Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      |+++.+|..+|.+|.+.|++++|...|.+++++.|.. .+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            5555555555555555555555555555555555444 444555555555555555555555554444444555555555


Q ss_pred             HHHhcCCChHHHHHHH
Q 010276          426 VHASNASGREKAKKFY  441 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~  441 (514)
                      +.... |++++|....
T Consensus       211 ~~~~~-g~~~~A~~i~  225 (257)
T COG5010         211 VVGLQ-GDFREAEDIA  225 (257)
T ss_pred             HHhhc-CChHHHHhhc
Confidence            55444 5555444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.62  E-value=7e-14  Score=136.39  Aligned_cols=222  Identities=8%  Similarity=-0.021  Sum_probs=142.3

Q ss_pred             CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      -++........++..+...+++++|+..++..++.+|+...+++.+|.++.+.+++.++...  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------   97 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------   97 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence            34555555555566666777777777777777777777777777777777777766655544  4444333322      


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA  368 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                              ++ .+.+.+...+...+.+..+++.+|.+|.. |+.++|...++++++.+|+++.+..++|..|... +.++
T Consensus        98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence                    22 22333333333345555677777777766 7777777777777777777777777777777777 7777


Q ss_pred             HHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH--------------------HHHHHHH
Q 010276          369 AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK--------------------LVGDVHA  428 (514)
Q Consensus       369 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~  428 (514)
                      |+.++.+++..             +...+++.++.+++.+.+..+|++.+.+.                    -+-.+|.
T Consensus       168 A~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~  234 (906)
T PRK14720        168 AITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK  234 (906)
T ss_pred             HHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            77777777654             44555666666667776666666544321                    1224455


Q ss_pred             hcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          429 SNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      .. +++++++..++.+++.+|.+..+...++.+|.
T Consensus       235 ~~-~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        235 AL-EDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hh-hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            55 67777777777777777777777777777776

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.62  E-value=1e-13  Score=114.29  Aligned_cols=122  Identities=20%  Similarity=0.240  Sum_probs=101.1

Q ss_pred             cCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCC--hHHHH
Q 010276          363 MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASG--REKAK  438 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~--~~~A~  438 (514)
                      .++.++++..++++++.+|++ ..|..+|.++...|++++|+..|++++...|+++.++..+|.++ ... |+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA-GQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCcHHHH
Confidence            567788888888888888887 77888888888888888888888888888888888888888865 454 66  48888


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ..++++++.+|+++.++..+|..+...|++++|+..++++++..|.+
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            88888888888888888888888888888888888888888888765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.61  E-value=1.1e-14  Score=124.94  Aligned_cols=265  Identities=14%  Similarity=0.141  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHH
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYM  286 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~  286 (514)
                      .+-..|.-+++.|++...+.+|+.+++...++    ..+|..+|.+|+.+++|++|+++-.-=+.+      .-....+-
T Consensus        19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence            34456888999999999999999999877766    457778899999999999998875432221      12234456


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhhcCC------CChHHHHHHHHHHhh-cC--------------------hhHHHHHH
Q 010276          287 DEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KD--------------------ERGALSYA  339 (514)
Q Consensus       287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~--------------------~~~A~~~~  339 (514)
                      -++|..+...|.+++|+.+..+-+....      ....+++++|.+|.. |+                    ++.|.++|
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy  178 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY  178 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence            6788888888889888888777655322      124667777777765 11                    11222333


Q ss_pred             HHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          340 EKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       340 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      ..-+++...      ...++-++|+.|+-+|+|+.|+..-+.-+.+...+       .++.++|.++.-.|+++.|+++|
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            322222111      12234455555555566666655555444432221       24555555555555555555555


Q ss_pred             HHHHhhC----C--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCChhHHHHH
Q 010276          407 REAMKAM----P--QSAKALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAVSL  474 (514)
Q Consensus       407 ~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~  474 (514)
                      +..+.+.    .  ..+...+.+|..|.-. .++++|+.++.+-+.+..      ....+++.||..+-..|..++|+.+
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll-~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f  337 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLL-KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF  337 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            5544321    1  1133344455555544 555555555554443311      1123445555555555555555555


Q ss_pred             HHHHHhhC
Q 010276          475 LERYLKDW  482 (514)
Q Consensus       475 ~~~~~~~~  482 (514)
                      .++.++..
T Consensus       338 ae~hl~~s  345 (639)
T KOG1130|consen  338 AELHLRSS  345 (639)
T ss_pred             HHHHHHHH
Confidence            55444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=1.2e-13  Score=113.84  Aligned_cols=152  Identities=10%  Similarity=0.096  Sum_probs=126.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      -+-.|+..|+++......++..  +|..         -+...++.++++..++++++.+|++.+.|..+|.++...|+++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence            3567888899888655543321  2211         1112667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHH-hh-cC--hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLW-ER-KD--ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA  376 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  376 (514)
                      +|+..|++++...|+++.++..+|.++ .. |+  .++|...++++++.+|+++.++..+|..+...|++++|+..|+++
T Consensus        91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999864 44 66  489999999999999999999999999999999999999999999


Q ss_pred             HhhcCCh
Q 010276          377 QELRPDL  383 (514)
Q Consensus       377 ~~~~~~~  383 (514)
                      ++..|..
T Consensus       171 L~l~~~~  177 (198)
T PRK10370        171 LDLNSPR  177 (198)
T ss_pred             HhhCCCC
Confidence            9988775

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.60  E-value=4.7e-10  Score=102.42  Aligned_cols=280  Identities=11%  Similarity=0.070  Sum_probs=213.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY----------------  281 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------------  281 (514)
                      |..|...|+.+.|..+|+++.+..-..    ..+|...|..-.+..+++.|+++.+++......                
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl  473 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL  473 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence            899999999999999999998754322    578888899999999999999999998764211                


Q ss_pred             --CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--cCchhHHHH
Q 010276          282 --IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMK  356 (514)
Q Consensus       282 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~~  356 (514)
                        +...|..++......|-++.....|++++++.--.|....+.|..+.. .-++++.+.|++.+.+.|  ...++|...
T Consensus       474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY  553 (835)
T KOG2047|consen  474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY  553 (835)
T ss_pred             HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence              145788889999999999999999999999999999999999998888 677899999999988764  444555433


Q ss_pred             ---HHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276          357 ---GNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN  430 (514)
Q Consensus       357 ---~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  430 (514)
                         ...-+.....+.|..+|+++++..|..   ..+...+..-.+-|-...|+.+|+++-..-+..  -.+.+-.+|...
T Consensus       554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~k  631 (835)
T KOG2047|consen  554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKK  631 (835)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHH
Confidence               222334457899999999999998864   346666788888899999999999987654331  111122222211


Q ss_pred             ---CCChHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHH
Q 010276          431 ---ASGREKAKKFYESALRLEPGYL--GAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ  502 (514)
Q Consensus       431 ---~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  502 (514)
                         .=-...-...|++|++.-|+..  ......+.+..+.|..+.|..+|..+-++.+..   ..|...-..-.+.|+-+
T Consensus       632 aae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  632 AAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             HHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence               0123456788999999877653  355678899999999999999999998876432   46766677777788843


Q ss_pred             H
Q 010276          503 E  503 (514)
Q Consensus       503 ~  503 (514)
                      .
T Consensus       712 T  712 (835)
T KOG2047|consen  712 T  712 (835)
T ss_pred             H
Confidence            3

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.60  E-value=1.2e-12  Score=127.82  Aligned_cols=283  Identities=12%  Similarity=0.078  Sum_probs=184.2

Q ss_pred             CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      |.+..++..++..+...|++++|+...+..++..|+....+..++-++...++...+...                    
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------------   87 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--------------------   87 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence            444555555555555555555555555555555555555554444433333222111000                    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                        ..+.......++ .+++.+-..+...|.+..+++.+|.||-++|+.++|...++++++.+|+++.++..+|..+... 
T Consensus        88 --~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         88 --NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             --hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence              012222222344 5555666666667888889999999999999999999999999999999999999999999999 


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      +.++|..++.+++..             .+..+++..+.+++.+.+..+|.+.+.+..+-......-.+..+.       
T Consensus       164 dL~KA~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~-------  223 (906)
T PRK14720        164 DKEKAITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV-------  223 (906)
T ss_pred             hHHHHHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH-------
Confidence            999999999998874             223378889999999999999988776544433322221122222       


Q ss_pred             hhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHH
Q 010276          378 ELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA  457 (514)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  457 (514)
                            ..+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|...   |.. ...|+..+++..        
T Consensus       224 ------~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k---Y~~-~~~~ee~l~~s~--------  285 (906)
T PRK14720        224 ------GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK---YKD-HSLLEDYLKMSD--------  285 (906)
T ss_pred             ------HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---ccC-cchHHHHHHHhc--------
Confidence                  23445566777888999999999999999999999999999998854   222 334444443321        


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          458 LAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                         +--....+..|+..|++.+...+.+
T Consensus       286 ---l~~~~~~~~~~i~~fek~i~f~~G~  310 (906)
T PRK14720        286 ---IGNNRKPVKDCIADFEKNIVFDTGN  310 (906)
T ss_pred             ---cccCCccHHHHHHHHHHHeeecCCC
Confidence               0011134567777777777776654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=1.9e-13  Score=125.95  Aligned_cols=221  Identities=17%  Similarity=0.132  Sum_probs=173.2

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      |........++..+...|-...|+..|++.        ..|.....+|...|+..+|..+..+-++ .|+++..|..+|.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            334456667888888888888888888874        4566677888888888888888888887 7777778877777


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  403 (514)
                      +... .-+++|.++.+..      +..+...+|......++|+++.++++..++++|-. ..|+.+|.+..+.+++..|.
T Consensus       466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            6655 3444555554432      23355666677777888888888888888888877 78888888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      +.|..++...|++..+|.+++..|... ++..+|...++++++.+-++..+|.+...+....|.+++|++.+.+.+.+.
T Consensus       540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  540 KAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888 888888888888888887778888888888888888888888888887654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=1.2e-13  Score=127.32  Aligned_cols=223  Identities=21%  Similarity=0.172  Sum_probs=199.3

Q ss_pred             cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                      ..-|..|.....++..+...|-...|+.++++.        +.|-....||...|+..+|.....+-++ .|.++..|..
T Consensus       392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~  462 (777)
T KOG1128|consen  392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL  462 (777)
T ss_pred             CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence            345677888889999999999999999999986        6777889999999999999999999998 6677888888


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      +|++.....-+++|.++.+...      ..+...+|..... +++.++.+.++..++++|-....|+.+|.+..+.++++
T Consensus       463 LGDv~~d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence            8888888887888887776543      3355666664444 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      .|...|...+..+|++ .+|++++.+|.+.++-.+|...++++++.+-++..+|-+.-.+.... |.+++|++.+.+.+.
T Consensus       537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv-ge~eda~~A~~rll~  615 (777)
T KOG1128|consen  537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHH
Confidence            9999999999999999 89999999999999999999999999999988999999999999998 999999999999887


Q ss_pred             h
Q 010276          447 L  447 (514)
Q Consensus       447 ~  447 (514)
                      +
T Consensus       616 ~  616 (777)
T KOG1128|consen  616 L  616 (777)
T ss_pred             h
Confidence            5

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.58  E-value=6.3e-13  Score=129.05  Aligned_cols=150  Identities=15%  Similarity=0.137  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA  412 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  412 (514)
                      +++.-........|.+++++..+|.+....|++++|...++.+++..|++ .++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            44444444555678888999999999999999999999999999999998 78899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      .|+++..++.+|.++... |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus       150 ~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        150 GSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             CCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            999999999999999998 99999999999999988999999999999999999999999999999988754

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.57  E-value=1.3e-13  Score=118.43  Aligned_cols=258  Identities=17%  Similarity=0.128  Sum_probs=202.8

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHH------HHhhcCCCChHHHHHHH
Q 010276          255 MAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVH------DLLSIDPSRPEVFVALS  324 (514)
Q Consensus       255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~l~  324 (514)
                      -|.-+++.|+....+..|+.+++...++.    ..+..+|..|...++|++|+++-.      +.+.-.-......-++|
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            36678899999999999999999887763    467889999999999999998743      33332333455667888


Q ss_pred             HHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCC--------------------hHHHHHHHHHhH
Q 010276          325 VLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKR--------------------PEAAVIAFRGAQ  377 (514)
Q Consensus       325 ~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~  377 (514)
                      +.+.. |.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-+
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            88877 9999999998887765322      35689999999988775                    345556665555


Q ss_pred             hhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          378 ELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       378 ~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      ++....       .++-++|..|+-.|+|+.|+..-+.-+.+..+.      -.++.++|.++.-. |+++.|+++|++.
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-g~fe~A~ehYK~t  261 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-GNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-cccHhHHHHHHHH
Confidence            543321       357889999999999999999888777654332      46788999999998 9999999999987


Q ss_pred             Hhh----CCCC--hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC-------chHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          445 LRL----EPGY--LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       445 ~~~----~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      +.+    ....  ....+.||..|.-..++++|+.++.+-+.+..+       -.+++.||..+..+|..++|+.+.+..
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            654    2222  457789999999999999999999998876532       258999999999999999999988877


Q ss_pred             hc
Q 010276          512 LR  513 (514)
Q Consensus       512 l~  513 (514)
                      ++
T Consensus       342 l~  343 (639)
T KOG1130|consen  342 LR  343 (639)
T ss_pred             HH
Confidence            64

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.57  E-value=1.6e-13  Score=119.70  Aligned_cols=257  Identities=17%  Similarity=0.154  Sum_probs=189.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      .+.++-.|+|..++.-++ ....+|. ..+....+.+++..+|+++..+.....   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            667788899999998777 3333332 356777889999999998876654433   22334456667777766656777


Q ss_pred             HHHHHHHHHhhcCCC--ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          301 KLSKLVHDLLSIDPS--RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      .++..++..+.....  ++......|.++.. |++++|++.+.+.     .+.+.......++...++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777766543322  34444455566665 9999999888764     456777788899999999999999999998


Q ss_pred             hhcCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          378 ELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       378 ~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      +.+.+. -.....+++.+..|  ++.+|...|++.....|.++..++.++.++..+ |++++|...+++++..+|+++++
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~  237 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDT  237 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHH
Confidence            877665 22333344444444  699999999999888889999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCh-hHHHHHHHHHHhhCCCchHH
Q 010276          455 ALALAELHVIEGRN-GDAVSLLERYLKDWADDSLH  488 (514)
Q Consensus       455 ~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~  488 (514)
                      +.+++.+....|+. +.+.+++.+.....|+++..
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            99999999999999 66777888888888887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.56  E-value=3.4e-13  Score=117.61  Aligned_cols=264  Identities=17%  Similarity=0.115  Sum_probs=160.6

Q ss_pred             CCchHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhh
Q 010276            1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN   80 (514)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   80 (514)
                      |..-+-.++..+-.|.|..++.-++ + .      ..++....+..+.+.+++...|+++..+......   .+....+.
T Consensus         1 ~~deLf~vrn~fy~G~Y~~~i~e~~-~-~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av   69 (290)
T PF04733_consen    1 MSDELFTVRNQFYLGNYQQCINEAS-L-K------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAV   69 (290)
T ss_dssp             ---TTHHHHHHHCTT-HHHHCHHHH-C-H------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHH
T ss_pred             CchHHHHHHHHHHhhhHHHHHHHhh-c-c------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHH
Confidence            3444556788888999999886655 2 1      1234567788889999999999988766544331   11112222


Q ss_pred             hhhhhhhhhccccCCCCccc----cc-ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC
Q 010276           81 STSSRSSLSTSNRSSSPNSF----NV-SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSR  155 (514)
Q Consensus        81 ~~~~~~~~~~~~~~~a~~~~----~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  155 (514)
                      ..++......++.+.....+    .. ....++.+....|.++...|++++|++.+.+.    .+.+.......++...+
T Consensus        70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~  145 (290)
T PF04733_consen   70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMN  145 (290)
T ss_dssp             HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcC
Confidence            22222222111222222111    01 11123445566677777778888887776653    55677777777888888


Q ss_pred             ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc--CHHH
Q 010276          156 HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN--DYKG  233 (514)
Q Consensus       156 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~  233 (514)
                      +++.|.+.++.+-+.+.+..-...                                        ..+.+.+..|  .+.+
T Consensus       146 R~dlA~k~l~~~~~~~eD~~l~qL----------------------------------------a~awv~l~~g~e~~~~  185 (290)
T PF04733_consen  146 RPDLAEKELKNMQQIDEDSILTQL----------------------------------------AEAWVNLATGGEKYQD  185 (290)
T ss_dssp             -HHHHHHHHHHHHCCSCCHHHHHH----------------------------------------HHHHHHHHHTTTCCCH
T ss_pred             CHHHHHHHHHHHHhcCCcHHHHHH----------------------------------------HHHHHHHHhCchhHHH
Confidence            888888888777766655433222                                        1233444433  5778


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh-hHHHHHHHHHhhc
Q 010276          234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSI  312 (514)
Q Consensus       234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~  312 (514)
                      |..+|+++.+..|.++.++..++.+++.+|++++|.+.+.+++..+|.+++++.+++.+....|+. +.+.+++.++...
T Consensus       186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            888888877777777777788888888888888888888888888888888888888877777777 4556666776667


Q ss_pred             CCCChHH
Q 010276          313 DPSRPEV  319 (514)
Q Consensus       313 ~~~~~~~  319 (514)
                      +|+++.+
T Consensus       266 ~p~h~~~  272 (290)
T PF04733_consen  266 NPNHPLV  272 (290)
T ss_dssp             TTTSHHH
T ss_pred             CCCChHH
Confidence            7777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.54  E-value=8.7e-13  Score=128.09  Aligned_cols=151  Identities=13%  Similarity=0.064  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS  311 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  311 (514)
                      .+++.-........|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|...+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            34444445555678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC
Q 010276          312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD  382 (514)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  382 (514)
                      ..|+++..++.+|.++.. |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            999999999999999988 99999999999999999999999999999999999999999999999988654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.53  E-value=5.5e-13  Score=104.23  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             HHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      .+++++..+|++ .....+|..+...|++++|...+++++..+|+++.++..+|.++... |++++|+..++++++.+|+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC
Confidence            455666666665 55666666666666666666666666666666666666666666666 6666666666666666666


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      ++..++.+|.++...|++++|+..++++++..|++.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            666666666666666666666666666666666653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=4.4e-12  Score=104.55  Aligned_cols=347  Identities=13%  Similarity=0.053  Sum_probs=247.6

Q ss_pred             HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276          118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      +++..+|.+|++++..- ...|.+...+..+|.||+...++..|..+|++.-...|......                  
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------------------   81 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------------------   81 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------------------
Confidence            46778999999999885 44477889999999999999999999999999998888643333                  


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                                            +..|..+++.+.+.+|+.+...+.+...-.......-+-+.+..+++..+....++.-
T Consensus        82 ----------------------lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp  139 (459)
T KOG4340|consen   82 ----------------------LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP  139 (459)
T ss_pred             ----------------------HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence                                  2338889999999999999887754321223455556777788888888877776542


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh----cccC--
Q 010276          277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----DERH--  349 (514)
Q Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~--  349 (514)
                      .  .+........|.+.++.|++++|.+-|+.+++...-+|..-++++.+..+ +++..|+++....++.    .|..  
T Consensus       140 ~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  140 S--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             C--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            1  24577888999999999999999999999999999999999999998777 9999999988887764    3431  


Q ss_pred             -----------------------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHhcCCHHHHH
Q 010276          350 -----------------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       350 -----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~  403 (514)
                                             .+++...+.++++.|+++.|.+.+..+--....   ...+.+++..- ..+++.+..
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~  296 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF  296 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence                                   123456777888889998888776554222111   12355555432 345677777


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHH-HcCChhHHHHHHHH
Q 010276          404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-----GAALALAELHV-IEGRNGDAVSLLER  477 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~-~~g~~~~A~~~~~~  477 (514)
                      .-++-.+.++|-.++.+.++-.+|.+. .-++.|...+-    -+|+..     +..+.|-..+. ..-..++|.+-+..
T Consensus       297 ~KLqFLL~~nPfP~ETFANlLllyCKN-eyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~  371 (459)
T KOG4340|consen  297 EKLQFLLQQNPFPPETFANLLLLYCKN-EYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG  371 (459)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHhhh-HHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            888888888998788888888888876 66666665543    344432     23334433333 34567788777776


Q ss_pred             HHhhC-----------------CCc------------------hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          478 YLKDW-----------------ADD------------------SLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       478 ~~~~~-----------------~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      .-...                 .++                  ++....+.+|+...++..+.+.|+...
T Consensus       372 La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv  441 (459)
T KOG4340|consen  372 LAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSV  441 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence            43211                 110                  345556777777777777777777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=5.5e-13  Score=104.25  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                      ..+++++..+|++......+|..+...|++++|...+++++..+|.+ ..+..+|.++...|++++|...+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45778888899888888899999999999999999999999988887 78889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      ++..++.+|.++... |++++|+..|+++++.+|++...
T Consensus        84 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        84 DPRPYFHAAECLLAL-GEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchH
Confidence            999999999999998 99999999999999999887653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=6.5e-13  Score=110.17  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK  294 (514)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (514)
                      ...+-..|.-++..++|.+|+..|.+++..+|.++..+..+|.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            33445678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      .+|++++|++.|+++++++|++...+..|..+-..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999887777665444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.48  E-value=2e-11  Score=104.03  Aligned_cols=186  Identities=12%  Similarity=0.116  Sum_probs=140.1

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      +...++.++..|..++..|+|++|+..|++++..+|..+                            -...+.+.+|.++
T Consensus        28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~----------------------------~a~~a~l~la~ay   79 (243)
T PRK10866         28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP----------------------------YSQQVQLDLIYAY   79 (243)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------------------------HHHHHHHHHHHHH
Confidence            345678899999999999999999999999999998664                            2345678999999


Q ss_pred             HhcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC---------------C---hhhHHHHHHHHHhcCCCCHH
Q 010276          119 FALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR---------------H---NRGAVACYKECLRHCPFFIE  176 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~  176 (514)
                      ++.+++++|+..+++.    +..|..+.+++.+|.++...+               +   ..+|+..|++.++..|++..
T Consensus        80 y~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866         80 YKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             HhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence            9999999999999884    555778889999998865443               1   35788999999999998866


Q ss_pred             HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHH
Q 010276          177 AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILL  253 (514)
Q Consensus       177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~  253 (514)
                      +......+..-.                       .......+..|..|.+.|.|.-|+..++.+++..|+.   .+++.
T Consensus       160 a~~A~~rl~~l~-----------------------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~  216 (243)
T PRK10866        160 TTDATKRLVFLK-----------------------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP  216 (243)
T ss_pred             HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence            543322111000                       0001112355888888888888888888888887765   56788


Q ss_pred             HHHHHHHHhCChHHHHHHHHHH
Q 010276          254 EMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       254 ~la~~~~~~~~~~~A~~~~~~~  275 (514)
                      .++..|...|..++|.+.....
T Consensus       217 ~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        217 LMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCChHHHHHHHHHH
Confidence            8888888888888887766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.48  E-value=2.6e-12  Score=97.60  Aligned_cols=102  Identities=12%  Similarity=-0.024  Sum_probs=87.2

Q ss_pred             CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      ++. +..+.+|..+...|++++|...|+-+...+|.+...|+++|.++..+ |++++|+..|.+++.++|+++.+++++|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            444 66788888888888888888888888888888888888888888888 8888888888888888888888888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhCC
Q 010276          460 ELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      .++...|+.+.|.+.|+.++....
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhc
Confidence            888888888888888888888763

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.46  E-value=8.4e-12  Score=103.97  Aligned_cols=179  Identities=18%  Similarity=0.241  Sum_probs=130.7

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      ...++.++..|..++..|+|.+|+..|++++...|.++                            -.+.+.+.+|.+++
T Consensus         2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----------------------------~a~~A~l~la~a~y   53 (203)
T PF13525_consen    2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP----------------------------YAPQAQLMLAYAYY   53 (203)
T ss_dssp             ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----------------------------THHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----------------------------HHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999766                            45788999999999


Q ss_pred             hcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276          120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITALAEL  184 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  184 (514)
                      ..|++++|+..++..    +..|..+.+++.+|.++....           ...+|+..|+..++..|++..+......+
T Consensus        54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l  133 (203)
T PF13525_consen   54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL  133 (203)
T ss_dssp             HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence            999999999998884    555677889999999876653           34589999999999999876554332111


Q ss_pred             ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 010276          185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAI  261 (514)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~  261 (514)
                      ..-                       ........+..|..|++.|.+..|+..++.+++..|+.   .+++..++.++..
T Consensus       134 ~~l-----------------------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  134 AEL-----------------------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHH-----------------------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHH-----------------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            100                       00111122455888888888888888888888888877   4577788888888


Q ss_pred             hCChHHHH
Q 010276          262 IGKNDEAI  269 (514)
Q Consensus       262 ~~~~~~A~  269 (514)
                      +|..+.|.
T Consensus       191 l~~~~~a~  198 (203)
T PF13525_consen  191 LGLKQAAD  198 (203)
T ss_dssp             TT-HHHHH
T ss_pred             hCChHHHH
Confidence            88877443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.6e-12  Score=107.85  Aligned_cols=105  Identities=20%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~  408 (514)
                      ++|.+|+..|.++|.++|.++..|.+++.+|.++|.++.|++..+.++.++|.+ .+|..||.+|..+|++++|++.|++
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence            777777777777777777777777777777777777777777777777777776 7777777777777777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276          409 AMKAMPQSAKALKLVGDVHASNASGRE  435 (514)
Q Consensus       409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~  435 (514)
                      +++++|++...+.++..+-... +...
T Consensus       175 aLeldP~Ne~~K~nL~~Ae~~l-~e~~  200 (304)
T KOG0553|consen  175 ALELDPDNESYKSNLKIAEQKL-NEPK  200 (304)
T ss_pred             hhccCCCcHHHHHHHHHHHHHh-cCCC
Confidence            7777777777776666665555 4443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=1e-11  Score=94.34  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=49.5

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      ++..+..+.+|..++..|++++|...|+.+...+|.+...|+.+|.++..+|++++|+..|.+++.++|++|..+.++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555555444444444444444444


Q ss_pred             HHhh-cChhHHHHHHHHHHHh
Q 010276          326 LWER-KDERGALSYAEKSIRI  345 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~  345 (514)
                      ++.. |+.+.|.+.|+.++..
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            4444 4444444444444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=2.6e-10  Score=101.25  Aligned_cols=124  Identities=14%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      |....+++..+..++..|++++|...+...+...|+|+..+...+.++...|+..+|.+.+++++..+|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  369 (514)
                      .+.. |++.+|+..++..+..+|+++..|..++..|..+|+..+|
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            4444 4455555555555555555555555555555555544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=2.6e-10  Score=101.26  Aligned_cols=153  Identities=20%  Similarity=0.200  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      ..|-.|..++..|++++|+..++.++...|+|+..+...+.++...|+..+|.+.+++++..+|..+..+..+|..+.+.
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            44566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG  375 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  375 (514)
                      |++.+|+..++..+..+|+++..|..++..|.. |+..++.                 ...+..+...|++++|+..+..
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999999999999999999999999887 7655544                 4557788889999999999999


Q ss_pred             hHhhc-CChHHH
Q 010276          376 AQELR-PDLRSY  386 (514)
Q Consensus       376 ~~~~~-~~~~~~  386 (514)
                      +.+.. .+...|
T Consensus       451 A~~~~~~~~~~~  462 (484)
T COG4783         451 ASQQVKLGFPDW  462 (484)
T ss_pred             HHHhccCCcHHH
Confidence            98775 333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.36  E-value=1.6e-10  Score=96.26  Aligned_cols=157  Identities=19%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL  422 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~  422 (514)
                      +..++..|..++..|++.+|+..|++++...|..    .+.+.+|.++...|++++|+..+++.+...|++   +.+++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            3455666666777777777777777776666653    456666777777777777777777777766665   345666


Q ss_pred             HHHHHHhcC----------CChHHHHHHHHHHHhhCCCChH-----------------HHHHHHHHHHHcCChhHHHHHH
Q 010276          423 VGDVHASNA----------SGREKAKKFYESALRLEPGYLG-----------------AALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       423 l~~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      +|.++....          +...+|+..|+..++..|+++.                 --+.+|..|.+.|.+..|+..+
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~  164 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF  164 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            666654320          2234677777777777777632                 2245788899999999999999


Q ss_pred             HHHHhhCCCc----hHHHHHHHHHHHhccHHHHHH
Q 010276          476 ERYLKDWADD----SLHVKLAQVFAATNMLQEALS  506 (514)
Q Consensus       476 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~  506 (514)
                      +.+++..|+.    +++..++..|.++|..+.|..
T Consensus       165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            9999999986    488999999999999885543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.34  E-value=4.5e-10  Score=95.75  Aligned_cols=176  Identities=13%  Similarity=0.015  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH---HHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHH
Q 010276          317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY---IMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQG  388 (514)
Q Consensus       317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~  388 (514)
                      +..++..|..... |++++|+..|++++...|..+.+.   +.+|.++++.+++++|+..+++.++..|++    .+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            3344444443333 555555555555555555543332   455555555555555555555555555543    23444


Q ss_pred             HHHHHHhcCC------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          389 LVHSYLQFSK------------------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       389 l~~~~~~~~~------------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      +|.++...++                  ..+|+..+++.++..|++..+               .+|...+..+-.   .
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---------------~~A~~rl~~l~~---~  173 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---------------TDATKRLVFLKD---R  173 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH---------------HHHHHHHHHHHH---H
Confidence            4544433320                  123444444455544443211               111110000000   0


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      -..--+..|..|.+.|.+..|+.-++.+++..|+.    ++++.++..|..+|..++|......
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            01122357888899999999999999999999875    5888999999999999999876643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.33  E-value=1.2e-09  Score=92.87  Aligned_cols=292  Identities=18%  Similarity=0.181  Sum_probs=221.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCC--CHHHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPY--IMTYMDEY  289 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~l  289 (514)
                      ...|.-++...++.+|+....+.+..-.+.   ...+-.+..++.++|.+++++..--..++.    ...  ..+++.++
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788889999999999999988754433   334555677888889988877664443332    221  24678889


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc------hhHHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKG  357 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~~~  357 (514)
                      +..+....++.+++.+-+..+......+     .+...++..+.. +.++++++.|+++++....+.      .++..+|
T Consensus        90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg  169 (518)
T KOG1941|consen   90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG  169 (518)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence            9999999999999999888887654433     455567776666 899999999999998754433      3578899


Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKAL  420 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~  420 (514)
                      .++....++++|.-+..++.++..+.           -+.+.++..+..+|+.-.|.++.+++.++.      +-.....
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999999999999998774322           246788999999999999999999987753      2335667


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCChh-----HHHHHHHHHHhhCCCc----
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNG-----DAVSLLERYLKDWADD----  485 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~----  485 (514)
                      ..+|.+|... |+.+.|..-|+++......      ..+++...+.++....-..     .|++.-++++++...-    
T Consensus       250 ~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~  328 (518)
T KOG1941|consen  250 LCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL  328 (518)
T ss_pred             HHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence            8899999999 9999999999999875321      2446667777766554444     4888888888876442    


Q ss_pred             ---hHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          486 ---SLHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       486 ---~~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                         ..+..++.+|..+|.-++=...+.++
T Consensus       329 ~vlK~hcrla~iYrs~gl~d~~~~h~~ra  357 (518)
T KOG1941|consen  329 SVLKLHCRLASIYRSKGLQDELRAHVVRA  357 (518)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence               58888999999999888777776665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.31  E-value=5.9e-10  Score=87.81  Aligned_cols=212  Identities=14%  Similarity=0.050  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276          284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS  362 (514)
Q Consensus       284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      ..++..|..|-..|-+.-|.-.|.+++.+.|+-|+++..+|..+.. |+++.|.+.|+..++++|....+..++|..++.
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence            3455556666777777777777777777788888888888777666 888888888888888888887788888888888


Q ss_pred             cCChHHHHHHHHHhHhhcCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 010276          363 MKRPEAAVIAFRGAQELRPDLR---SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK  439 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~  439 (514)
                      -|+++-|.+.+.+-.+.+|+++   .|..+.   ...-++.+|..-+.+-.+...+.-..|...+..+    |+..+ ..
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL----gkiS~-e~  217 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL----GKISE-ET  217 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH----hhccH-HH
Confidence            8888888888888777777763   233332   2233566665544333332222233333333222    22111 12


Q ss_pred             HHHHHHhhCCCC-------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----h-HHHHHHHHHHHhccHHH
Q 010276          440 FYESALRLEPGY-------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----S-LHVKLAQVFAATNMLQE  503 (514)
Q Consensus       440 ~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~l~~~~~~~g~~~~  503 (514)
                      .++++.....++       .++++.+|..+...|+.++|...|+-++..+--+    . +.+.++.+.....+..+
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~  293 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE  293 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence            233333322222       4577888888888888888888888887755333    2 55556655555444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=7.3e-11  Score=107.24  Aligned_cols=109  Identities=21%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG  433 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  433 (514)
                      ..|...+..|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++.++|+++.+++.+|.++... |+
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~   85 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EE   85 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CC
Confidence            44555555555555555555555555555 45555555555555555555555555555555555555555555555 55


Q ss_pred             hHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          434 REKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      +++|+..|+++++++|+++.+...++.+...
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5555555555555555555555555544433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.31  E-value=7.7e-11  Score=92.67  Aligned_cols=132  Identities=18%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      .++.+...+..++...+....+.+...     ..+.+....+.+.+|..++..|++++|+..|+.++...|+..      
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------   82 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------   82 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------
Confidence            345555666788888887767767662     222345567889999999999999999999999999765322      


Q ss_pred             hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276           84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC  163 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  163 (514)
                                            -...+.+++|.+++..|++++|+..++.+...+..+.++..+|.++...|++++|+..
T Consensus        83 ----------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   83 ----------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                                  2355788999999999999999999999877778888999999999999999999999


Q ss_pred             HHHHH
Q 010276          164 YKECL  168 (514)
Q Consensus       164 ~~~~l  168 (514)
                      |++++
T Consensus       141 y~~Al  145 (145)
T PF09976_consen  141 YQKAL  145 (145)
T ss_pred             HHHhC
Confidence            99874

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.29  E-value=3.5e-07  Score=87.55  Aligned_cols=227  Identities=15%  Similarity=0.112  Sum_probs=146.7

Q ss_pred             HhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHh
Q 010276           53 LFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEME  132 (514)
Q Consensus        53 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  132 (514)
                      ....++|++|.....+.++..|                               +..-+....|..+.++|+.++|..+++
T Consensus        19 ~ld~~qfkkal~~~~kllkk~P-------------------------------n~~~a~vLkaLsl~r~gk~~ea~~~Le   67 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHP-------------------------------NALYAKVLKALSLFRLGKGDEALKLLE   67 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCC-------------------------------CcHHHHHHHHHHHHHhcCchhHHHHHh
Confidence            3567899999999999999977                               445566777888899999999999998


Q ss_pred             cCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCC
Q 010276          133 GIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD  211 (514)
Q Consensus       133 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (514)
                      ..... +.+...+-.+-.+|..+|+.++|..+|+++...+|. .+....+...+.+.+.+......+.+..+..|...  
T Consensus        68 ~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~--  144 (932)
T KOG2053|consen   68 ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA--  144 (932)
T ss_pred             hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--
Confidence            86444 567778888889999999999999999999999998 77777777777777766555555555544444221  


Q ss_pred             chhHHhHHHHHHHHHHhcC---------HHHHHHHHHHHHHhC-CCc-HHHHHHHHHHHHHhCChHHHHHHHH-HHHh-h
Q 010276          212 SSRWLHRYVEAQCCIASND---------YKGGLELFAELLQRF-PNN-IHILLEMAKVDAIIGKNDEAILNFE-KVRS-I  278 (514)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~-~~~~-~  278 (514)
                      ---|...   ..+......         ..-|...+++.++.. +-. ..-....-.++..+|++++|.+.+. ...+ .
T Consensus       145 yyfWsV~---Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l  221 (932)
T KOG2053|consen  145 YYFWSVI---SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL  221 (932)
T ss_pred             chHHHHH---HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence            0111111   111111111         122444455555443 211 1111222345566777888877773 2222 3


Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276          279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR  316 (514)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  316 (514)
                      .+.+...-..-...+...++|.+-.++..+++...+++
T Consensus       222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            33344444455666777777777777777777777776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.29  E-value=1.1e-10  Score=106.18  Aligned_cols=111  Identities=15%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      ...|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      +++|+..|++++.++|+++.+...++.+...
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998888776544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.25  E-value=1.3e-07  Score=81.71  Aligned_cols=257  Identities=17%  Similarity=0.133  Sum_probs=192.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      +.+.++...-.|+++.|.+-|+.++. +|.. .--+..+-.-..+.|..+.|+.+-+++....|.-+.++...-...+..
T Consensus       123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~  201 (531)
T COG3898         123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA  201 (531)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence            34557888888999999999998864 3432 111222222334679999999999999999999999888888888999


Q ss_pred             CChhHHHHHHHHHhhcC---CCCh-----HHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276          297 CDYSKLSKLVHDLLSID---PSRP-----EVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA  368 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      |+|+.|+++.+......   ++-.     ..+...+......+...|...-..+.++.|+....-..-+..+++.|+..+
T Consensus       202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rK  281 (531)
T COG3898         202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRK  281 (531)
T ss_pred             CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhh
Confidence            99999999987765432   2211     112222223333677789999999999999999988899999999999999


Q ss_pred             HHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          369 AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAR---EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       369 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +-.+++.+.+..|....+..  ..+.+.|+  .++.-++   +...+.|++.+....++..-..- |++..|..--+.+.
T Consensus       282 g~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda-~e~~~ARa~Aeaa~  356 (531)
T COG3898         282 GSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA-GEFSAARAKAEAAA  356 (531)
T ss_pred             hhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc-cchHHHHHHHHHHh
Confidence            99999999999888744322  22334444  3443343   44557799999999999988887 99999999999998


Q ss_pred             hhCCCChHHHHHHHHHHHHc-CChhHHHHHHHHHHhh
Q 010276          446 RLEPGYLGAALALAELHVIE-GRNGDAVSLLERYLKD  481 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~  481 (514)
                      ...|. ..++..|+.+.... |+-.+...++-++++-
T Consensus       357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            88887 46777788887766 9999999999998874

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=6e-10  Score=93.65  Aligned_cols=122  Identities=20%  Similarity=0.245  Sum_probs=99.1

Q ss_pred             ChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--ChHHHHHHH
Q 010276          365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GREKAKKFY  441 (514)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~A~~~~  441 (514)
                      ..+.-+.-++.-+..+|++ +.|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++....|  ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            3455566667777778887 7788888888888888888888888888888888888888888776533  347888889


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      +++++.+|++..+.+.||..++..|+|.+|...++..++..|.+.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999988887663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.24  E-value=5.3e-10  Score=87.94  Aligned_cols=117  Identities=25%  Similarity=0.225  Sum_probs=97.1

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCh
Q 010276          395 QFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRN  468 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~  468 (514)
                      ..++...+...++..+..+|+.   ..+.+.+|.++... |++++|...|++++...|+.   +.+.+.++.++...|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            5788888888899999999888   56677899999998 99999999999999887655   34788899999999999


Q ss_pred             hHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       469 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      ++|+..++........+.++..+|.++...|++++|+..|++||
T Consensus       102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999997632222223588888999999999999999999885

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.24  E-value=2.9e-07  Score=79.67  Aligned_cols=284  Identities=16%  Similarity=0.088  Sum_probs=216.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCC
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCD  298 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  298 (514)
                      |.+....|+-..|...-.+.-+.-..+  +-++..-++.-...|+++.|.+-|+.++. +|.. .-.+..+-.--...|.
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence            666777899999999988887654444  44555668888889999999999998876 3432 2223333334467899


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHH-HHHhhcChhHHHHHHHHHHHhc---ccCch-----hHHHHHHHHHhcCChHHH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRID---ERHIP-----GYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~A  369 (514)
                      .+.|+.+.+++....|.-+.++...- ..+..|+++.|++..+......   ++..+     .+...+.. .-..+...|
T Consensus       170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~A  248 (531)
T COG3898         170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASA  248 (531)
T ss_pred             HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHH
Confidence            99999999999999999988776554 4444499999999998765532   22111     11122222 223468889


Q ss_pred             HHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHH---HHH
Q 010276          370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE---SAL  445 (514)
Q Consensus       370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~---~a~  445 (514)
                      ...-.++.++.|+. ++-..-+..+++.|+..++-.+++.+.+..|. +.++    ..|... ..-+.++.-++   +..
T Consensus       249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia----~lY~~a-r~gdta~dRlkRa~~L~  322 (531)
T COG3898         249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA----LLYVRA-RSGDTALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH----HHHHHh-cCCCcHHHHHHHHHHHH
Confidence            99999999999998 78888899999999999999999999999887 4433    333332 22233444444   445


Q ss_pred             hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh-ccHHHHHHHHHHHhc
Q 010276          446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-NMLQEALSHYEAALR  513 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~  513 (514)
                      .+.|++.+.....+..-..-|++..|..--+.+....|...++..++++-... |+-.++..++-+++.
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999999876 999999999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=4.6e-08  Score=92.30  Aligned_cols=326  Identities=17%  Similarity=0.089  Sum_probs=175.3

Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----------cCCCCHHHHHHHHHhcc
Q 010276          118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR-----------HCPFFIEAITALAELGA  186 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~  186 (514)
                      |...|+.+.|.+.++.|    .+..+|-.++....+..+.+-|.-++-.+-.           .+|+..++.        
T Consensus       738 yvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--------  805 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--------  805 (1416)
T ss_pred             EEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--------
Confidence            34578888887777766    3455677788877777777766655432211           112111111        


Q ss_pred             CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276          187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND  266 (514)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  266 (514)
                                                        -|......|..++|..+|++.-.        +-.+-..|...|.++
T Consensus       806 ----------------------------------vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~  843 (1416)
T KOG3617|consen  806 ----------------------------------VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWS  843 (1416)
T ss_pred             ----------------------------------HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHH
Confidence                                              14445566777777777766532        223445566667777


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH----------hhcCCC----------ChHHHHHHHHH
Q 010276          267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL----------LSIDPS----------RPEVFVALSVL  326 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~~----------~~~~~~~l~~~  326 (514)
                      +|.+.-+.--.+.  -...+++++..+...++.+.|+++|+++          +..+|.          ++..|...|..
T Consensus       844 eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY  921 (1416)
T KOG3617|consen  844 EAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY  921 (1416)
T ss_pred             HHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence            6666554321111  1235666666666677777777666554          222222          34455555665


Q ss_pred             Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHH
Q 010276          327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA  405 (514)
Q Consensus       327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  405 (514)
                      +.. |+.+.|+.+|..+-.        |+.+..+.+-+|+.++|..+-++.    .+..+-+.+|..|...|+..+|+..
T Consensus       922 lES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  922 LESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             HhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            555 777777777776532        333334444444444444333221    1123445555555555555555555


Q ss_pred             HHHHHhh------CCCC--------------HHHHHHHHHHHHhcCCChHHHHHHHHHH------H--------------
Q 010276          406 AREAMKA------MPQS--------------AKALKLVGDVHASNASGREKAKKFYESA------L--------------  445 (514)
Q Consensus       406 ~~~~~~~------~p~~--------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a------~--------------  445 (514)
                      |.++-..      ..++              +.-....+..|...+|....|...|.+|      +              
T Consensus       990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            5544221      1100              0111122333333322444444433322      1              


Q ss_pred             ---hhCC-CChHHHHHHHHHHHHcCChhHHHHHHHHHH------hhC----------------CC------c----hHHH
Q 010276          446 ---RLEP-GYLGAALALAELHVIEGRNGDAVSLLERYL------KDW----------------AD------D----SLHV  489 (514)
Q Consensus       446 ---~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~------~~~----------------~~------~----~~~~  489 (514)
                         .++| .+|..+..-+..+....+|++|...+-.+.      .+.                |.      .    .++-
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence               1233 346667777778888888888877655442      221                11      0    4788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHH
Q 010276          490 KLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       490 ~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      .+|.++.++|.|..|-+-|.+|
T Consensus      1150 qvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHhccchHHHHHHHhhh
Confidence            8999999999999998888765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=7.5e-10  Score=93.07  Aligned_cols=121  Identities=13%  Similarity=0.064  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHH
Q 010276          266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEK  341 (514)
Q Consensus       266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~  341 (514)
                      +.-+.-++.-+..+|++.+.|..+|.+|...|++..|...|.++.++.|++++.+..++.++..    ....++...+++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            3334445555556666666666666666666666666666666666666666666666664444    233477777888


Q ss_pred             HHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHH
Q 010276          342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY  386 (514)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  386 (514)
                      ++..+|.++.+.+.+|..++..|+|.+|+..++..+...|.+..+
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            888888888888888888888888888888888888777766443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.20  E-value=2.2e-08  Score=99.68  Aligned_cols=238  Identities=12%  Similarity=0.090  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc-CCCCh----HHHHHHHHHHhh-cChhHHHHHH
Q 010276          266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSRP----EVFVALSVLWER-KDERGALSYA  339 (514)
Q Consensus       266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~l~~~~~~-~~~~~A~~~~  339 (514)
                      .+..+.|++.+.-+|+..-.|..+.......++.++|.+..++++.. ++...    .+|..+-++... |.-+.-.+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34456677777888888888888888888888888888888888863 33332    233333333333 6666777888


Q ss_pred             HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C
Q 010276          340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--S  416 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~  416 (514)
                      +++.+.... ...+..+..+|...+++++|.++|+.+++...+. ..|..++..++++++-+.|...+.++++.-|.  +
T Consensus      1521 eRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            888765432 4567788889999999999999999998887754 78999999999999999999999999998887  6


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHH
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQ  493 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~  493 (514)
                      .......+.+-++. |+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+.+..+|++++.+.-..   ..++..=.
T Consensus      1600 v~~IskfAqLEFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred             HHHHHHHHHHHhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence            77788888888888 999999999999999999999999999999999999999999999998876433   34444433


Q ss_pred             HHHH-hccHHHHH
Q 010276          494 VFAA-TNMLQEAL  505 (514)
Q Consensus       494 ~~~~-~g~~~~A~  505 (514)
                      -|.+ .|+-+...
T Consensus      1679 eyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVE 1691 (1710)
T ss_pred             HHHHhcCchhhHH
Confidence            3443 35544333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=2.5e-09  Score=84.38  Aligned_cols=196  Identities=15%  Similarity=0.069  Sum_probs=134.3

Q ss_pred             hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML  292 (514)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  292 (514)
                      .....++.+|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34445567788888888888899999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHH-HHHhcccCchhHHHHHHHHHhcCChHHHHH
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEK-SIRIDERHIPGYIMKGNLLLSMKRPEAAVI  371 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  371 (514)
                      ++-.|++.-|.+-+.+..+.+|++|---..+-..-..-++.+|..-+.+ +...+.+ ...|...+   +..|+..+ ..
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS~-e~  217 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKISE-ET  217 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhccH-HH
Confidence            8999999999999988888888887543333222222556666654433 3332222 22222222   22233221 12


Q ss_pred             HHHHhHhhcCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276          372 AFRGAQELRPDL--------RSYQGLVHSYLQFSKVKEALYAAREAMKAM  413 (514)
Q Consensus       372 ~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  413 (514)
                      .++++.....++        ++++.+|..+...|+.++|...|+-++..+
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            333333322222        356777777777788888777777776543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.19  E-value=7.5e-10  Score=84.44  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALAL  458 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l  458 (514)
                      .++.+|..+...|++++|+..+++++..+|++   +.+++.+|.++... |++++|+..|++++...|++   +.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            34555555555555555555555555555544   34555566666655 66666666666666555553   3455556


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          459 AELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      |.++...|++++|...++++++..|++
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            666666666666666666666665554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.19  E-value=3.9e-07  Score=80.06  Aligned_cols=222  Identities=25%  Similarity=0.262  Sum_probs=161.3

Q ss_pred             hCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhh--cCCCChHHHHHHHHHHhh-cChhHHH
Q 010276          262 IGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLS--IDPSRPEVFVALSVLWER-KDERGAL  336 (514)
Q Consensus       262 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~A~  336 (514)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+.....  ..+.....+...+..... +++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35556666666666666554  255666667777777777777777777665  566666666666666655 6677777


Q ss_pred             HHHHHHHHhcccCchhHHHHHH-HHHhcCChHHHHHHHHHhHhhcCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          337 SYAEKSIRIDERHIPGYIMKGN-LLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|.  .  ..+...+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777777766665555555555 778888888888888888776662  2  4455566667778888888888888888


Q ss_pred             hCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          412 AMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       412 ~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      ..+. ....+..++..+... ++++.|...+..++...|.....+..++..+...+.++++...+.+.+...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            8888 688888888888887 88888888888888888876667777777777667788888888888888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.19  E-value=5.8e-09  Score=103.58  Aligned_cols=215  Identities=17%  Similarity=0.155  Sum_probs=188.9

Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-cccC----chhHHHHHHHHHhcCChHHHHHH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-DERH----IPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      -.+..+-|++.+..+|++.-.|........+ ++.++|.+..++++.. ++..    ..+|..+-++...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            3445667888888899999999887666666 9999999999999973 4432    34566666666667877888899


Q ss_pred             HHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--
Q 010276          373 FRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG--  450 (514)
Q Consensus       373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~--  450 (514)
                      |++|.+.+.....+..|..+|...+++++|.++++.+++...+...+|..+|..+... ++-+.|...+.+|++.-|.  
T Consensus      1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhh
Confidence            9999998877789999999999999999999999999999998899999999999998 8889999999999999888  


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      +.+.....|.+.++.|+.+.+..+|+-.+..+|.- +.|..+.+.-.+.|+.+.+...|++++.+
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            67788889999999999999999999999999986 59999999999999999999999999864

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.19  E-value=8.6e-10  Score=84.10  Aligned_cols=106  Identities=25%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL  422 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~  422 (514)
                      +..++.+|..+...|++++|+..|++++...|++    .+++.+|.++...|++++|+..+++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567788888888888888888888888888764    467888888888888888888888888887775   567888


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      +|.++... |++++|+..++++++..|+++.+..
T Consensus        82 ~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQEL-GDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHh-CChHHHHHHHHHHHHHCcCChhHHH
Confidence            88888887 8888899999888888888765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=8e-08  Score=78.74  Aligned_cols=257  Identities=14%  Similarity=0.177  Sum_probs=188.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      .-.+-++-.|+|..++...++.-... ..++....+.+.|..+|++..-+......-   .....+...++.....-++.
T Consensus        13 F~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   13 FNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence            33677788899999988877764433 677888889999999998776554433322   22234556666666666666


Q ss_pred             hHHHHHHHHHhh-cCCCChHHHHHHH-HHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276          300 SKLSKLVHDLLS-IDPSRPEVFVALS-VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA  376 (514)
Q Consensus       300 ~~A~~~~~~~~~-~~~~~~~~~~~l~-~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  376 (514)
                      ++-+.-..+.+. ....+..++..++ .++.. +++++|++.....     .+.++...-..++.++.+.+-|...++++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555544443 3333333444444 45555 9999999988773     33455556667888999999999999999


Q ss_pred             HhhcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276          377 QELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      .+++.+ .....|+.++..    .+++.+|.-+|++.-+..|..+......+.++..+ |++++|...++.++..+++++
T Consensus       164 q~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dp  241 (299)
T KOG3081|consen  164 QQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDP  241 (299)
T ss_pred             HccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCH
Confidence            877644 344445555543    45799999999999998888899999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHH-HHHHHHhhCCCchH
Q 010276          453 GAALALAELHVIEGRNGDAVS-LLERYLKDWADDSL  487 (514)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~  487 (514)
                      +++.++..+-...|...++.+ .+.+.....|+...
T Consensus       242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            999999999999998877665 45555556676653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.17  E-value=1.7e-10  Score=77.76  Aligned_cols=67  Identities=24%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-ChhHHHHHHHHHHhhCC
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWA  483 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~  483 (514)
                      ++..|..+|.++... |++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            455666666666666 66666666666666666666666666666666666 56666666666666665

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.17  E-value=2e-09  Score=87.54  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=84.6

Q ss_pred             cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                      .....++.+|..+...|++++|+.+|+++++..|+.    .++..+|.++...|++++|+..+++++...|+++..+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344556777777777888888888888877765542    4577777777777888888888887777777777777777


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      |.++... |+...+...+.+++.                    .+++|++.+++++...|++
T Consensus       113 g~~~~~~-g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKR-GEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHc-CChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            7777776 776665555544432                    2677888888888888776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.16  E-value=7e-10  Score=81.15  Aligned_cols=98  Identities=23%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      +++.+|..+...|++++|+..++++++..|.++.++..+|.++... +++++|+..+++++...|.++.++..++.++..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            3556666667777777777777777777776666677777777776 777777777777777777766677777777777


Q ss_pred             cCChhHHHHHHHHHHhhCC
Q 010276          465 EGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~  483 (514)
                      .|++++|...+.++++..|
T Consensus        81 ~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHhHHHHHHHHHHHHccCC
Confidence            7777777777777666655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.15  E-value=1.6e-09  Score=87.88  Aligned_cols=100  Identities=23%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                      .+..+|.++...|++++|+..|++++...|+.   +.++.++|.++... |++++|+..+++++.++|.....+..+|.+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            45555666666666666666666665554432   33566666666665 666666666666666666666555555555


Q ss_pred             HH-------HcCChh-------HHHHHHHHHHhhCCCc
Q 010276          462 HV-------IEGRNG-------DAVSLLERYLKDWADD  485 (514)
Q Consensus       462 ~~-------~~g~~~-------~A~~~~~~~~~~~~~~  485 (514)
                      +.       ..|+++       +|+..+++++...|++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            55       555554       4455555566666653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.14  E-value=3.8e-08  Score=86.92  Aligned_cols=167  Identities=16%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHH
Q 010276          256 AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGA  335 (514)
Q Consensus       256 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A  335 (514)
                      |.+|...|++++|.+.|.++...              +.+.++...|...+              ...+.++...++++|
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~Aa~~~--------------~~Aa~~~k~~~~~~A   93 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEAAKAY--------------EEAANCYKKGDPDEA   93 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHHHHHH--------------HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHHHHHH--------------HHHHHHHHhhCHHHH
Confidence            66777777888887777776442              23333333332222              233334444556666


Q ss_pred             HHHHHHHHHhccc------CchhHHHHHHHHHhc-CChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHH
Q 010276          336 LSYAEKSIRIDER------HIPGYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       336 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~  401 (514)
                      +.++++++.+.-.      -...+..+|.+|... |++++|+++|+++.+.....       ..+..++.++...|+|++
T Consensus        94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~  173 (282)
T PF14938_consen   94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE  173 (282)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence            6666666554221      134566788888888 89999999999998763211       346788899999999999


Q ss_pred             HHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          402 ALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       402 A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      |+..|+++....-++       ...++..+.|+... ||...|...+++....+|..
T Consensus       174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~-~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM-GDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Confidence            999999888753221       13445667777777 89999999999888888754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.3e-09  Score=95.02  Aligned_cols=130  Identities=21%  Similarity=0.241  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhhcCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  416 (514)
                      ....|+.+++.|+|..|...|++++..-+.                ..++.+++.++.++++|.+|+..+.+++...|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            345688889999999999999988765221                1258999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH-HHHHHHHHhhCC
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLKDWA  483 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~~  483 (514)
                      ..+++..|.++... |+++.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|.+++...+
T Consensus       291 ~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  291 VKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999 9999999999999999999999999999998887776555 788888887654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.11  E-value=2.8e-09  Score=81.58  Aligned_cols=110  Identities=13%  Similarity=0.018  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ...+..|.-++..|++++|...|+-..-.+|.+++.+..+|.++..+ +++++|+..|..+..+++++|...+..|.|+.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            45677778888888888888888888888888888888888888887 88888888888888888888888888888888


Q ss_pred             HcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276          464 IEGRNGDAVSLLERYLKDWADDSLHVKLAQVF  495 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  495 (514)
                      .+|+.+.|...|+.++. .|.+......+..+
T Consensus       117 ~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~  147 (165)
T PRK15331        117 LMRKAAKARQCFELVNE-RTEDESLRAKALVY  147 (165)
T ss_pred             HhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence            88888888888888877 35544444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.11  E-value=2.7e-08  Score=76.61  Aligned_cols=148  Identities=20%  Similarity=0.182  Sum_probs=88.5

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-cCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDL-RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      -+.+....-..+.+.+.|. ....+.+|+.+.+.|++.+|...|++++.- ..++ ..+..++...+..+++..|...++
T Consensus        70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3444444444444444454 334556666666666766666666666543 2222 445666666666666666666666


Q ss_pred             HHHhhCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          408 EAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       408 ~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      +..+.+|.  .++....+|.++... |.+.+|...|+.++...|+ +.+....+..+.++|+.++|..-+....+
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~-g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQ-GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhc-CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            66666654  355566666666666 6666666666666666665 45556666666666666666655554444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=3.5e-07  Score=75.09  Aligned_cols=117  Identities=12%  Similarity=0.035  Sum_probs=53.5

Q ss_pred             HHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHH
Q 010276           49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI  128 (514)
Q Consensus        49 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  128 (514)
                      -.+-+|-.|+|..++..-.+.-... ..+.....+.+.|+..|....-..........+..+...++.....-++.++-+
T Consensus        14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHH
Confidence            3455666799988887776654432 344444445555555555444444433333333333333444443334433333


Q ss_pred             HHHhc-CCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010276          129 VEMEG-IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKE  166 (514)
Q Consensus       129 ~~~~~-~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  166 (514)
                      ..+.. +...  ..+.-....-|.++...|++++|.+....
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~  133 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL  133 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc
Confidence            33332 1111  12222333334445555555555544443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.10  E-value=1e-07  Score=78.56  Aligned_cols=192  Identities=19%  Similarity=0.216  Sum_probs=138.5

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      ...+..|+..|...++.|+|++|+..|+.+....|..+                            -...+.+.++..++
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------~~~qa~l~l~yA~Y   82 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------YSEQAQLDLAYAYY   82 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------ccHHHHHHHHHHHH
Confidence            34678999999999999999999999999999988765                            44778899999999


Q ss_pred             hcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC
Q 010276          120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR--------HNRGAVACYKECLRHCPFFIEAITALAELGAT  187 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  187 (514)
                      +.+++++|+..+++.    +..|+-.-++++.|.++...=        -..+|+..|+..+...|++.-+......+-.-
T Consensus        83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~  162 (254)
T COG4105          83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL  162 (254)
T ss_pred             hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            999999999888873    455666777888898877632        24578889999999999876555333222100


Q ss_pred             cccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCC
Q 010276          188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK  264 (514)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~  264 (514)
                      .                       ......-+..|..|.+.|.+-.|+..++.+++..|+.   .+++..+..+|..+|-
T Consensus       163 ~-----------------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         163 N-----------------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             H-----------------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence            0                       0000111344777888888888888888888776654   4566677777777777


Q ss_pred             hHHHHHHHHHHHhhCCCC
Q 010276          265 NDEAILNFEKVRSIDPYI  282 (514)
Q Consensus       265 ~~~A~~~~~~~~~~~~~~  282 (514)
                      .++|.+.-.-+-...|++
T Consensus       220 ~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         220 TDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             hHHHHHHHHHHHhcCCCC
Confidence            777766554444444444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.10  E-value=7.2e-07  Score=85.47  Aligned_cols=284  Identities=13%  Similarity=0.030  Sum_probs=190.7

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      -....+++.+|.....++++.+|+.+.+....|.++.++|+.++|..+++..-...+++...+..+..+|..+|+.++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            34567899999999999999999999999999999999999999999988888888888889999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH-HHHHHHhcCChH---------HHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM-KGNLLLSMKRPE---------AAVIA  372 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~A~~~  372 (514)
                      .+|+++...+|+ .+....+-.+|.+ ++|.+-.+.--+..+..|+.+..+.. +..+.......+         -|...
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            999999999999 7777776667766 66665544444555567777665444 333333333332         34455


Q ss_pred             HHHhHhhc-CCh--HHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          373 FRGAQELR-PDL--RSYQGLVHSYLQFSKVKEALYAARE-AMKAMP-QSAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       373 ~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      .++.++.. +-.  .-....-.++..+|++++|.+.+.. ..+..+ .+...-......+... +++.+-.+...+++..
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l-~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL-NRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence            55555554 221  1123334566778999999999843 333333 3444444555566666 8999999999999988


Q ss_pred             CCCChHHHHH-HHHHH------------HHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHHhccHHHHHHHHH
Q 010276          448 EPGYLGAALA-LAELH------------VIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAATNMLQEALSHYE  509 (514)
Q Consensus       448 ~~~~~~~~~~-la~~~------------~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~  509 (514)
                      ++++-.++.. .-.+.            ...+..+.-++..++.+......+  ++..+-.-+...|+.+++...|-
T Consensus       256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~  332 (932)
T KOG2053|consen  256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF  332 (932)
T ss_pred             CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence            8887211111 11111            122333444444444443322222  44444444456788888776664

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.10  E-value=3.2e-09  Score=86.35  Aligned_cols=116  Identities=19%  Similarity=0.198  Sum_probs=98.3

Q ss_pred             CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC---chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276          315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL  389 (514)
Q Consensus       315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l  389 (514)
                      .....++.+|..+.. |++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..+++++...|++ ..+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            446678888988877 99999999999999887764   3589999999999999999999999999999988 788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      |.++...|+...+...+..++                     ..+++|..++++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh
Confidence            999999999877776655543                     34677888888888888876

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.10  E-value=6e-09  Score=98.69  Aligned_cols=122  Identities=9%  Similarity=0.026  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCh
Q 010276          366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGR  434 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~  434 (514)
                      ...|+.+|+++++.+|++ .++-.++.++...        ++...+....++++..  +|.++.++..+|...... |++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~-g~~  436 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK-GKT  436 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc-CCH
Confidence            455666666666666665 4444444444322        1234455555555553  666677777788877776 888


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276          435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV  489 (514)
Q Consensus       435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  489 (514)
                      ++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.++|.++.|+
T Consensus       437 ~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        437 DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence            8888888888888884 67888888888888888888888888888888765433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.09  E-value=3.8e-10  Score=79.26  Aligned_cols=78  Identities=28%  Similarity=0.392  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHH
Q 010276          432 SGREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY  508 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~  508 (514)
                      |+++.|+..++++++.+|.  +...++.+|.++++.|++++|+.++++ .+..|.+ ...+.+|.++.++|++++|+++|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5555555555555555553  233445555555555555555555555 4444444 34445555555555555555555


Q ss_pred             HH
Q 010276          509 EA  510 (514)
Q Consensus       509 ~~  510 (514)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=5.2e-09  Score=84.83  Aligned_cols=121  Identities=16%  Similarity=0.090  Sum_probs=88.9

Q ss_pred             ChhHHHHHHHHHHHhcccC--chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHH
Q 010276          331 DERGALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      .+..+...+...++..+..  ...++.+|.++...|++++|+..|++++.+.|+.    .++.++|.++...|++++|+.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444445554444444333  4567888888888888888888888888776653    368888899999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHH-------hcCCChH-------HHHHHHHHHHhhCCCCh
Q 010276          405 AAREAMKAMPQSAKALKLVGDVHA-------SNASGRE-------KAKKFYESALRLEPGYL  452 (514)
Q Consensus       405 ~~~~~~~~~p~~~~~~~~l~~~~~-------~~~~~~~-------~A~~~~~~a~~~~~~~~  452 (514)
                      .+++++...|.....+..+|.++.       .. |+++       +|...|++++..+|.+.
T Consensus        94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQ-GDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc-ccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999998888888888888888887       65 6766       55566666777777543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.08  E-value=6.4e-10  Score=73.78  Aligned_cols=63  Identities=22%  Similarity=0.349  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 010276          221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM  283 (514)
Q Consensus       221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  283 (514)
                      +|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            467777777777777777777777777777777777777777777777777777777777653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=5.3e-10  Score=78.51  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             hcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHH
Q 010276          228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL  305 (514)
Q Consensus       228 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  305 (514)
                      .|++++|+..++++++..|.  +...++.+|.++++.|++++|+..+++ .+.+|.++.....+|.++..+|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58999999999999999885  566788899999999999999999999 888888888888999999999999999999


Q ss_pred             HHHH
Q 010276          306 VHDL  309 (514)
Q Consensus       306 ~~~~  309 (514)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            8864

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.08  E-value=5.2e-07  Score=79.20  Aligned_cols=222  Identities=27%  Similarity=0.314  Sum_probs=192.0

Q ss_pred             hcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       228 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .+.+..+...+.......+.  ........+..+...+++..+...+.....  ..+.....+...+......+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46777888888888887776  378888899999999999999999999987  67888889999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHH-HHhh-cChhHHHHHHHHHHHhcc---cCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276          304 KLVHDLLSIDPSRPEVFVALSV-LWER-KDERGALSYAEKSIRIDE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                      ..+..+....+.........+. ++.. ++++.|...+.+++...|   .........+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999988877555555554 4444 999999999999988776   3455566677778889999999999999999


Q ss_pred             hcCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          379 LRPD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       379 ~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      ..+. . ..+..++..+...+++++|...+..++...|.....+...+..+... +..+++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-GRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc-CCHHHHHHHHHHHHHhCcc
Confidence            9988 4 78999999999999999999999999999999888888888888854 8899999999999999987

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.07  E-value=7.1e-10  Score=74.67  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCC
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDP  314 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~  314 (514)
                      +..+..+|.+++..|++++|+..|+++++.+|+++.++..+|.++...| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555444

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.07  E-value=1.7e-07  Score=80.19  Aligned_cols=300  Identities=14%  Similarity=0.084  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHH
Q 010276          143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA  222 (514)
Q Consensus       143 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  222 (514)
                      -...-|.-++...++++|+..+.+.+..-.+...-+..++                                     ...
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG-------------------------------------~l~   50 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLG-------------------------------------CLV   50 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------------cch
Confidence            3455566667777788888877777765443322222221                                     113


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHH
Q 010276          223 QCCIASNDYKGGLELFAELLQR----FPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAM  291 (514)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~  291 (514)
                      .+....|.|++++..--..++.    ...  .-+++..+++.+....++.+++.+-+..+......     ......++.
T Consensus        51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~  130 (518)
T KOG1941|consen   51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGN  130 (518)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHH
Confidence            4444556666555443333321    111  13567777777777778888887777776653322     245666788


Q ss_pred             HHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----------chhHH
Q 010276          292 LLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH----------IPGYI  354 (514)
Q Consensus       292 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----------~~~~~  354 (514)
                      .+...+.++++++.|+.++....++      -.++..+|.++.. .++++|.-+..++.++....          ..+.+
T Consensus       131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            8888888888888888887754332      2456677777777 88888888888777653221          23456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcC--Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHH
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRP--DL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALK  421 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~  421 (514)
                      .++..+..+|+.-.|.++.+++.++.-  .+     .....+|.+|...|+.+.|..-|+++......      ...++.
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~  290 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALD  290 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            788888888999999888888876632  12     34567889999999999998888888764321      134445


Q ss_pred             HHHHHHHhcCCCh-----HHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          422 LVGDVHASNASGR-----EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       422 ~l~~~~~~~~~~~-----~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      ..+.+.... .-.     =.|++.-++++++...-      ......++.+|..+|.-++=...+.++-+
T Consensus       291 g~Akc~~~~-r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  291 GAAKCLETL-RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             HHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            555555443 222     34777777776654321      23566788888888877776666665433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.07  E-value=3.7e-09  Score=77.24  Aligned_cols=96  Identities=21%  Similarity=0.287  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      +..|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            45577888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHhhcCC
Q 010276          299 YSKLSKLVHDLLSIDP  314 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~  314 (514)
                      +++|...+.+++...|
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            8888888888877665

>PRK15331 chaperone protein SicA; Provisional

Probab=99.06  E-value=6.3e-09  Score=79.67  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL  361 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      .+..+..|.-++..|++++|..+|+-+.-.+|.+++.|..+|.++.. +++++|+..|..+..+++++|...+..|.++.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            44445555555555555555555555555555555555555555544 55555555555555555666666666666666


Q ss_pred             hcCChHHHHHHHHHhHh
Q 010276          362 SMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~  378 (514)
                      ..|+.+.|..+|+.++.
T Consensus       117 ~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        117 LMRKAAKARQCFELVNE  133 (165)
T ss_pred             HhCCHHHHHHHHHHHHh
Confidence            66666666666666655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=9.3e-10  Score=72.98  Aligned_cols=62  Identities=29%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      +|..+...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence            344444444444444444444444444444444444444444 44444444444444444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.05  E-value=1.2e-05  Score=72.99  Aligned_cols=364  Identities=13%  Similarity=0.069  Sum_probs=165.7

Q ss_pred             CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccH---hHHHhccCCcCCCCCCCcC
Q 010276          134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNRSGRAPFDHL  210 (514)
Q Consensus       134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  210 (514)
                      +...|.+.++|+.+.+-+..+ .+++....|++.+...|..+.+|..........+++   +..+.++...       ..
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-------vL   84 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-------VL   84 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------Hh
Confidence            344566666666666655554 666666666666666666666665554433333222   2222222111       01


Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHH----HHHHHH---hCCCcHHHHHHHHHHHH---------HhCChHHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLEL----FAELLQ---RFPNNIHILLEMAKVDA---------IIGKNDEAILNFEK  274 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~~~---~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~  274 (514)
                      +-+.|..+.  ..+-...|+...+...    |+-++.   .++.+..+|...+..+.         ...+.+.-...|++
T Consensus        85 nlDLW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr  162 (656)
T KOG1914|consen   85 NLDLWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR  162 (656)
T ss_pred             hHhHHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence            122232221  2222234444444333    333333   24455555655554432         23345556677888


Q ss_pred             HHhhCCCCHH-HHHHHH-------------HHHHHhCChhHHHHHHHHHhhc-------CCC-----C------hHHHHH
Q 010276          275 VRSIDPYIMT-YMDEYA-------------MLLKVKCDYSKLSKLVHDLLSI-------DPS-----R------PEVFVA  322 (514)
Q Consensus       275 ~~~~~~~~~~-~~~~l~-------------~~~~~~~~~~~A~~~~~~~~~~-------~~~-----~------~~~~~~  322 (514)
                      ++...-.+.+ .|..+-             .+-.....|..|...+++....       .|.     .      .+.|.+
T Consensus       163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n  242 (656)
T KOG1914|consen  163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN  242 (656)
T ss_pred             HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence            8765333321 221111             1112233455566555554332       111     0      122322


Q ss_pred             HHHHHhh-------cCh--hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC--------------hHHHHHHHHHhHhh
Q 010276          323 LSVLWER-------KDE--RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--------------PEAAVIAFRGAQEL  379 (514)
Q Consensus       323 l~~~~~~-------~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~  379 (514)
                      +...-..       |..  ..-.-.+++++..-+..+++|+..+..+...++              .+++..+|++++..
T Consensus       243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~  322 (656)
T KOG1914|consen  243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG  322 (656)
T ss_pred             HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            2222211       111  123334566666666666666655555544444              56677777776654


Q ss_pred             cCCh--HHHHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 010276          380 RPDL--RSYQG--------------------------------------LVHSYLQFSKVKEALYAAREAMKAMPQSAKA  419 (514)
Q Consensus       380 ~~~~--~~~~~--------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  419 (514)
                      .-..  ..++.                                      +...-.+..-...|..+|.++-+..-....+
T Consensus       323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV  402 (656)
T KOG1914|consen  323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV  402 (656)
T ss_pred             HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence            2221  11222                                      2222222233333444444443322111222


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh--CCCc--hHHHHHHHHH
Q 010276          420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD--WADD--SLHVKLAQVF  495 (514)
Q Consensus       420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~l~~~~  495 (514)
                      +..-|.+-....++..-|.+.|+-.++..++.+..-......+...++-..|..+|++++..  .|+.  ++|..+-..-
T Consensus       403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE  482 (656)
T KOG1914|consen  403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE  482 (656)
T ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence            22222222211256666666666666666666665555666666666666666666666655  2221  3555555544


Q ss_pred             HHhccHHHHHHH
Q 010276          496 AATNMLQEALSH  507 (514)
Q Consensus       496 ~~~g~~~~A~~~  507 (514)
                      ..-|+....++.
T Consensus       483 S~vGdL~si~~l  494 (656)
T KOG1914|consen  483 SNVGDLNSILKL  494 (656)
T ss_pred             HhcccHHHHHHH
Confidence            555555544443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.05  E-value=9.6e-11  Score=98.72  Aligned_cols=232  Identities=9%  Similarity=0.057  Sum_probs=172.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      .+|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...+..|...+..++.++.....++...+..-..+|..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchh---------HHHHHHHHHhcCChHHHH
Q 010276          300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPG---------YIMKGNLLLSMKRPEAAV  370 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~A~  370 (514)
                      .+|.+.++.++.+.|++.+..-.++.+-..   .++ +.   +.+..|....+         ....|..+...|.++.++
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl---~E~-~I---~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i  254 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARINSL---RER-KI---ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV  254 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHhcch---Hhh-hH---HhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence            999999999999999987766655544321   000 00   11111221111         223466777888888888


Q ss_pred             HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      .++.+-+....++..+..-+..+.+.-+++.++....+.+...|.........+..-.-. |...++...++.++.+.|.
T Consensus       255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~-~~~~E~K~~~~T~~~~~P~  333 (536)
T KOG4648|consen  255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIA-KTSKEVKPTKQTAVKVAPA  333 (536)
T ss_pred             eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHH-hhhhhcCcchhheeeeccc
Confidence            888776655444422211266677777888888888888777766555444444444444 6777788888888888887


Q ss_pred             ChHHHHHHH
Q 010276          451 YLGAALALA  459 (514)
Q Consensus       451 ~~~~~~~la  459 (514)
                      +..+...+.
T Consensus       334 ~~~~~~~~s  342 (536)
T KOG4648|consen  334 VETPKETET  342 (536)
T ss_pred             cccchhhhh
Confidence            755444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=7.7e-09  Score=90.27  Aligned_cols=126  Identities=13%  Similarity=0.036  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      ....|..+++.|+|..|...|++++..-+..               ..++.+++.|+.++ +++.+|+....+++.++|+
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-KEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-hhHHHHHHHHHHHHhcCCC
Confidence            4556899999999999999999998754311               35789999999999 9999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHH-HHHHHHHh
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEA-LSHYEAAL  512 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A-~~~~~~al  512 (514)
                      |..+++..|.++..+|+++.|+..|++++++.|++. +...+..+..+..++.+. .+.|.+++
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999995 888888888777666554 66666654

>PRK11906 transcriptional regulator; Provisional

Probab=99.03  E-value=4.9e-08  Score=87.68  Aligned_cols=132  Identities=8%  Similarity=0.032  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCCCH
Q 010276          219 YVEAQCCIASND---YKGGLELFAELL---QRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIM  283 (514)
Q Consensus       219 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~  283 (514)
                      +++|...+..+.   ...|..+|.+++   ..+|+...++..++.|++..         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            455555544332   345666666666   56666666666666665543         122345555555555555555


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc
Q 010276          284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI  350 (514)
Q Consensus       284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~  350 (514)
                      .++..+|.+....++++.|...|++++.++|+.+.+++..|.+... |+.++|+..++++++++|.-.
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            5555555555555555555555555555555555555555554444 555555555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=1.6e-06  Score=82.38  Aligned_cols=153  Identities=18%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH----------HhcCCCCHHHHHHHH
Q 010276          113 KIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----------LRHCPFFIEAITALA  182 (514)
Q Consensus       113 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~p~~~~~~~~l~  182 (514)
                      .+-..|...|.+++|.++.+.-.. -.-...++..+.-+...++.+.|+++|+++          +..+|...+-+..- 
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DR-iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~-  908 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDR-IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR-  908 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhccc-eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh-
Confidence            355677789999999988775211 123456788888888999999999999874          22233222222211 


Q ss_pred             HhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 010276          183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII  262 (514)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  262 (514)
                                                ..++..|.   .-|......|+.+.|+.+|..+-        -|+.+.++..-+
T Consensus       909 --------------------------~~d~~L~~---WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~q  951 (1416)
T KOG3617|consen  909 --------------------------KRDESLYS---WWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQ  951 (1416)
T ss_pred             --------------------------ccchHHHH---HHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeec
Confidence                                      11222221   22667777889999998888763        355566666667


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276          263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL  309 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  309 (514)
                      |+.++|...-++     ..+..+.+.+|+.|...|++.+|+..|.++
T Consensus       952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            777777655443     345566777777777777777777776655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.02  E-value=2.4e-07  Score=76.47  Aligned_cols=186  Identities=16%  Similarity=0.107  Sum_probs=94.4

Q ss_pred             HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHH
Q 010276          215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---YMDE  288 (514)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~  288 (514)
                      ...++..|...++.|++++|+..|+.+...+|.+   ..+...++.++++.+++++|+...++.+.+.|.++.   +++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3444555666666666666666666666665544   345566666666666666666666666666665532   3333


Q ss_pred             HHHHHHHh--------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHH
Q 010276          289 YAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL  360 (514)
Q Consensus       289 l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  360 (514)
                      .|.++...        .-...|...++..+...|++.-+-.....+          ..+...      -..--..+|..|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i----------~~~~d~------LA~~Em~IaryY  177 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI----------VKLNDA------LAGHEMAIARYY  177 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----------HHHHHH------HHHHHHHHHHHH
Confidence            33332221        011223333333344444332211111000          000000      011123456666


Q ss_pred             HhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276          361 LSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       361 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  416 (514)
                      .+.|.+..|+.-++.+++..|+.    +++..+..+|...|-.++|...-.-.-...|++
T Consensus       178 ~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         178 LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            77777777777777776665553    456666666666666666655544333334443

>PRK11906 transcriptional regulator; Provisional

Probab=99.02  E-value=4.3e-08  Score=88.02  Aligned_cols=108  Identities=16%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA  412 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  412 (514)
                      +|....+++++++|.++.++..+|.+....++++.|...|++++.++|+. .+|+..|.+..-.|+.++|.+.+++++++
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            55666666666666666666666666666666666666666666666666 55666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHH--HHHhcCCChHHHHHHHHH
Q 010276          413 MPQSAKALKLVGD--VHASNASGREKAKKFYES  443 (514)
Q Consensus       413 ~p~~~~~~~~l~~--~~~~~~~~~~~A~~~~~~  443 (514)
                      +|.-..+-...-.  .|..  ...++|+..|-+
T Consensus       402 sP~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  432 (458)
T PRK11906        402 EPRRRKAVVIKECVDMYVP--NPLKNNIKLYYK  432 (458)
T ss_pred             CchhhHHHHHHHHHHHHcC--CchhhhHHHHhh
Confidence            6654333222222  2222  445556655544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.01  E-value=1.6e-08  Score=86.81  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=91.6

Q ss_pred             hHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 010276          217 HRYVEAQCC-IASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEY  289 (514)
Q Consensus       217 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l  289 (514)
                      ..|..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            345556665 56799999999999999999988   5899999999999999999999999999888775   7888999


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV  321 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  321 (514)
                      |.++...|++++|...|+++++..|++..+..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            99999999999999999999999998875543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.00  E-value=2.8e-08  Score=94.20  Aligned_cols=73  Identities=18%  Similarity=0.027  Sum_probs=42.7

Q ss_pred             cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276          346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK  418 (514)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  418 (514)
                      +|.++.++..+|......|++++|...+++++.++|+..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            4444455555555555556666666666666666664455566666666666666666666666666665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.99  E-value=1.6e-08  Score=86.76  Aligned_cols=102  Identities=15%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHH
Q 010276          384 RSYQGLVHSY-LQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAAL  456 (514)
Q Consensus       384 ~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~  456 (514)
                      ..++..+..+ ...|++++|+..|+..++.+|++   +.+++.+|.+|... |++++|+..|+++++..|++   +++++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            3444444443 45567777777777777777766   46777777777776 77777777777777666653   55677


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      .+|.++...|++++|...|+++++..|++.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            777777777777777777777777777654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.99  E-value=2.1e-08  Score=90.67  Aligned_cols=118  Identities=25%  Similarity=0.262  Sum_probs=73.5

Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      ..+...++++.|+..+++..+.+|+.  ...++.++...++-.+|+..+.+++...|.+...+...+..+... ++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHH
Confidence            33444556666666666666555542  334556666666666666666666666666666666666666665 666666


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      +...++++...|++...|+.|+.+|...|+++.|+..++.+
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            66666666666666666666666666666666666555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.98  E-value=5e-08  Score=86.17  Aligned_cols=126  Identities=22%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             HHHHHHh-cCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHH
Q 010276          222 AQCCIAS-NDYKGGLELFAELLQRFPN--N----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------MTYMD  287 (514)
Q Consensus       222 a~~~~~~-~~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~  287 (514)
                      |.++... |++++|++.|+++......  .    ..++..+|.++...|+|++|++.|+++....-.+       ...+.
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            5566666 6777777777777653211  1    3456677777888888888888887776643211       12345


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhhcCCCCh---H--HHHHHHHHHhh---cChhHHHHHHHHHHHhcc
Q 010276          288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---E--VFVALSVLWER---KDERGALSYAEKSIRIDE  347 (514)
Q Consensus       288 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~--~~~~l~~~~~~---~~~~~A~~~~~~~~~~~~  347 (514)
                      ..+.++...|++..|...+++....+|...   +  ....+-..+..   ..+.+++.-|++..+++|
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            566677777788888888877777766432   2  22233333443   334466666665554444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.95  E-value=2.1e-08  Score=83.40  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=100.3

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE  123 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  123 (514)
                      .-.|..|-.++..|+|..|...|..-++.+|+++                            -.+.++|.||.+++.+|+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~----------------------------~~~nA~yWLGe~~y~qg~  193 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST----------------------------YTPNAYYWLGESLYAQGD  193 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----------------------------ccchhHHHHHHHHHhccc
Confidence            3489999999999999999999999999999876                            558899999999999999


Q ss_pred             HHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276          124 TKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL  181 (514)
Q Consensus       124 ~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  181 (514)
                      +++|...|..+    +..|..+++++-+|.+...+|+.++|...|+++++..|+...+...-
T Consensus       194 y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         194 YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999988874    56688999999999999999999999999999999999988877654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.94  E-value=4.3e-08  Score=72.49  Aligned_cols=95  Identities=19%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLV  423 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l  423 (514)
                      .+++.+|.++-..|+.++|+..|++++....+.    .++..+|..+...|++++|+..+++.+...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            456777777777788888888888777764332    46777777777777777777777777777776   56666777


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHh
Q 010276          424 GDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      +.++... |+.++|+..+-.++.
T Consensus        82 Al~L~~~-gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNL-GRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHC-CCHHHHHHHHHHHHH
Confidence            7777776 777777777766654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.92  E-value=5.2e-08  Score=81.17  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM  291 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~  291 (514)
                      .|..|.-++..|+|..|...|...++..|++   +.++++||.+++.+|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6788999999999999999999999999987   7899999999999999999999999999988776   689999999


Q ss_pred             HHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276          292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                      +...+|+.++|...++++++..|+.+.+....
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999999987765443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.91  E-value=5.7e-08  Score=87.87  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      ..+...+...++++.|+..+++..+.+|+   +...++.++... ++..+|++.+.++++..|.+...+...+..+...+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            34556666788999999999999988875   556789999887 89999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      +++.|+...+++++..|++ ..|+.|+.+|..+|++++|+..+..
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            9999999999999999998 4999999999999999999987653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.90  E-value=4.9e-07  Score=69.89  Aligned_cols=151  Identities=18%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK-AMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      ...+.=+++.......+.+...|.....+.++....+.|++.+|...|++++. +.-+++..+..++...... +++..|
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a  143 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAA  143 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHH
Confidence            33444455555555666666667777777777777777777777777777775 5566677777777777777 777777


Q ss_pred             HHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          438 KKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       438 ~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      ...+++..+.+|.  .++....+|+.+...|++.+|...|+.++...|+.......+..+.++|+..+|...+..
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            7777777777664  355667777777777777777777777777777777777777777777776666655443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.90  E-value=8e-09  Score=69.30  Aligned_cols=66  Identities=30%  Similarity=0.356  Sum_probs=47.9

Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM  291 (514)
Q Consensus       226 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  291 (514)
                      +..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777776666655543

...

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=4.5e-05  Score=68.43  Aligned_cols=434  Identities=14%  Similarity=0.101  Sum_probs=262.2

Q ss_pred             hHHHHHHHHhhHhhhh--hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           42 KAENLIILGDSLFRDR--EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        42 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      -+.++.-+|+.+...|  +.+.++++++..+...|.+.                            -....+.++|..++
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~----------------------------veart~LqLg~lL~   57 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL----------------------------VEARTHLQLGALLL   57 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH----------------------------HHHHHHHHHHHHHH
Confidence            3557778889888899  99999999999887755221                            12334556776665


Q ss_pred             h-cCCHHHHHHHHhcC----CCCCc----cHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHH----HHHHHHHhc
Q 010276          120 A-LGETKAAIVEMEGI----PSKAR----NLQMSLLMAKLYRNSR-HNRGAVACYKECLRHCPFFIE----AITALAELG  185 (514)
Q Consensus       120 ~-~g~~~~A~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~  185 (514)
                      . ..+++.|...+++.    ..-|.    ..++..+++.+|.... .+..|...++++++.....+.    ....|+++.
T Consensus        58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~  137 (629)
T KOG2300|consen   58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH  137 (629)
T ss_pred             HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence            4 67888888887772    11133    3456678899988877 788999999999987655442    235567777


Q ss_pred             cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHH--HHHHHHHhcC---HHHHHHHHHHHHHhCCCcH---H----HHH
Q 010276          186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYV--EAQCCIASND---YKGGLELFAELLQRFPNNI---H----ILL  253 (514)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~---~----~~~  253 (514)
                      .-..++..+.+-...-.....  ..........+.  .+.+.....+   ...+.....++.+....++   +    .+.
T Consensus       138 ~idkD~~sA~elLavga~sAd--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl  215 (629)
T KOG2300|consen  138 IIDKDFPSALELLAVGAESAD--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYL  215 (629)
T ss_pred             hhhccchhHHHHHhccccccc--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence            777777666655322211111  111122222222  2333333333   3344555555555433332   1    222


Q ss_pred             HHHHH-HHHhCChHHHHHHHHHH---Hh-hCCC-----------C------------HHHHHHHHHH--HHHhCChhHHH
Q 010276          254 EMAKV-DAIIGKNDEAILNFEKV---RS-IDPY-----------I------------MTYMDEYAML--LKVKCDYSKLS  303 (514)
Q Consensus       254 ~la~~-~~~~~~~~~A~~~~~~~---~~-~~~~-----------~------------~~~~~~l~~~--~~~~~~~~~A~  303 (514)
                      .+-.+ |...|+...+...+++.   ++ +.+.           +            ..++..+..+  -...|-+++|.
T Consensus       216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~  295 (629)
T KOG2300|consen  216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ  295 (629)
T ss_pred             HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence            33333 33457766665555543   22 1221           0            0111111111  12346677777


Q ss_pred             HHHHHHhhcC------CCChHHHHHHHH--------HHhh-cChhHHHHHHHHHHHhc---cc-------CchhHHHHHH
Q 010276          304 KLVHDLLSID------PSRPEVFVALSV--------LWER-KDERGALSYAEKSIRID---ER-------HIPGYIMKGN  358 (514)
Q Consensus       304 ~~~~~~~~~~------~~~~~~~~~l~~--------~~~~-~~~~~A~~~~~~~~~~~---~~-------~~~~~~~~~~  358 (514)
                      ++-++++...      |....+...+-.        +-.. |++.+|++....+.+..   |.       .+.++..+|.
T Consensus       296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl  375 (629)
T KOG2300|consen  296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL  375 (629)
T ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence            7777766432      112222222211        1111 99999988887776643   33       2345677888


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL--R--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----------AKALKLVG  424 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l~  424 (514)
                      .....+.++.|...|..+.+.....  .  .-.+++..|.+.|+-+.-.+.++.   +.|.+          ..+++..|
T Consensus       376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~g  452 (629)
T KOG2300|consen  376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYG  452 (629)
T ss_pred             HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHH
Confidence            8888899999999999998876554  2  346789999998877655554443   34442          34567777


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC---CCch----HHHHH
Q 010276          425 DVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADDS----LHVKL  491 (514)
Q Consensus       425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~l  491 (514)
                      ...+.. +++.+|...+.+.++.....      .-.+..|+.+....|+..++.+...-++...   |+..    ....+
T Consensus       453 lfaf~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~  531 (629)
T KOG2300|consen  453 LFAFKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL  531 (629)
T ss_pred             HHHHHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Confidence            777787 99999999999999875211      2255668889999999999999988887765   4443    22234


Q ss_pred             HHHHHHhcc--HHHHHHHHH
Q 010276          492 AQVFAATNM--LQEALSHYE  509 (514)
Q Consensus       492 ~~~~~~~g~--~~~A~~~~~  509 (514)
                      -.+|...|+  .++..+.|.
T Consensus       532 ~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  532 TDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             HHHHHHhCcchhhHHHHHHH
Confidence            566777777  555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.88  E-value=2.7e-09  Score=90.22  Aligned_cols=226  Identities=11%  Similarity=0.040  Sum_probs=160.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276          144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ  223 (514)
Q Consensus       144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  223 (514)
                      .-..|.-|+++|+|++|+.+|.+++..+|.++..+...                                        |.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NR----------------------------------------A~  139 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINR----------------------------------------AL  139 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhH----------------------------------------HH
Confidence            35678999999999999999999999999887666543                                        88


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .|++...|..|..-++.++..+.....+|...+.+-..+|...+|.+.++.++.+.|.+.+..-.++.+-.    ..++.
T Consensus       140 AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~  215 (536)
T KOG4648|consen  140 AYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK  215 (536)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh
Confidence            89999999999999999999998889999999999999999999999999999999998776655554432    11111


Q ss_pred             HHHHHHhhcCCCChHHHHHH---------HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVAL---------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l---------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                          -+....|....+....         |..+.. |.++.++.++.+-+.....+.....+ +..+.+..+++.++...
T Consensus       216 ----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~  290 (536)
T KOG4648|consen  216 ----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEE  290 (536)
T ss_pred             ----HHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHH
Confidence                1111222222222222         222223 56666666665554444333333333 66677778888888888


Q ss_pred             HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276          374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK  418 (514)
Q Consensus       374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  418 (514)
                      .+++..+|.. ......+.+-.-.|...++...++.++...|.+..
T Consensus       291 ~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  291 VKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             HHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence            8887777765 44444555555566777788888888777776543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.86  E-value=8e-08  Score=72.05  Aligned_cols=114  Identities=15%  Similarity=0.200  Sum_probs=98.4

Q ss_pred             ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276           38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC  117 (514)
Q Consensus        38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~  117 (514)
                      .+...+..++..|...++.|+|++|++.|+......|..+                            -...+.+.++.+
T Consensus         5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------------------------ya~qAqL~l~ya   56 (142)
T PF13512_consen    5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------------------------YAEQAQLDLAYA   56 (142)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------------------------ccHHHHHHHHHH
Confidence            4556677899999999999999999999999999998655                            456788999999


Q ss_pred             HHhcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCC---------------hhhHHHHHHHHHhcCCCCHHHH
Q 010276          118 HFALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRH---------------NRGAVACYKECLRHCPFFIEAI  178 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~~  178 (514)
                      ++..|++++|+..+++.    +..|.-+-+++..|.++..+..               ..+|...|+++++..|++..+.
T Consensus        57 yy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   57 YYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999998883    4456677789999999998876               8899999999999999987665


Q ss_pred             H
Q 010276          179 T  179 (514)
Q Consensus       179 ~  179 (514)
                      .
T Consensus       137 d  137 (142)
T PF13512_consen  137 D  137 (142)
T ss_pred             H
Confidence            4

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=5.2e-08  Score=76.03  Aligned_cols=112  Identities=22%  Similarity=0.198  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV  426 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  426 (514)
                      +..-|+-++..|+|++|..-|..++.+.|..      ..|.+.|.+.++++.++.|+..+.++++++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            3445778889999999999999999998875      1367888999999999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       427 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      |.+. ..+++|+..|.+.++.+|...++....+++--..
T Consensus       178 yek~-ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  178 YEKM-EKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHhh-hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            9998 9999999999999999998877766666554433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.85  E-value=9.2e-08  Score=70.75  Aligned_cols=95  Identities=21%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC---ChHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPG---YLGAALAL  458 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l  458 (514)
                      +++.++.++...|+.++|+.+|++++...+..   ..++..+|..+... |++++|+..+++++...|+   +..+...+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            56788888888888888888888888865443   56778888888888 8888888888888888777   66677778


Q ss_pred             HHHHHHcCChhHHHHHHHHHHh
Q 010276          459 AELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.83  E-value=3.2e-05  Score=72.94  Aligned_cols=232  Identities=16%  Similarity=0.136  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHH------Hhh----CCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKV------RSI----DPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE  318 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~------~~~----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  318 (514)
                      +.+-..|.++.+..++++|+++|++.      +++    .|.. ...-...|.-+...|+++.|+..|-.+-..      
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~------  735 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL------  735 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH------
Confidence            34555566777777788888877653      222    2322 223344577778888888888877654221      


Q ss_pred             HHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCC
Q 010276          319 VFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK  398 (514)
Q Consensus       319 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  398 (514)
                       ...+-.....+++.+|+..++..-..... ...|-.++.-|...|+|+-|.+.|.++-.       ...-...|.+.|+
T Consensus       736 -~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~k  806 (1636)
T KOG3616|consen  736 -IKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGK  806 (1636)
T ss_pred             -HHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhcccc
Confidence             00111122227778888877765443322 34456678888999999999988877621       2233466778889


Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      |.+|.+.-.++..  |+. ...+...+.-+... |++.+|.+.|-..-  .|+.      -...|-+.|.+++-+...++
T Consensus       807 w~da~kla~e~~~--~e~t~~~yiakaedldeh-gkf~eaeqlyiti~--~p~~------aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEH-GKFAEAEQLYITIG--EPDK------AIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh-cchhhhhheeEEcc--CchH------HHHHHHhhCcchHHHHHHHH
Confidence            9888887776643  433 34445555556666 77766666553210  1111      11233344444444433332


Q ss_pred             HHhhCCCc--hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          478 YLKDWADD--SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       478 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                         ..|+.  +.+..+|.-+...|+...|...|-+
T Consensus       876 ---~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  876 ---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             ---hChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence               22332  3555555555555555555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.83  E-value=1.6e-08  Score=67.81  Aligned_cols=53  Identities=34%  Similarity=0.406  Sum_probs=25.3

Q ss_pred             CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      |++++|+..|++++..+|+++.+++.+|.++.+.|++++|...+++++...|+
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            44444444444444444444444444444444444444444444444444444

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.4e-05  Score=65.79  Aligned_cols=224  Identities=17%  Similarity=0.115  Sum_probs=141.5

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------------------MTYMDEYAMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~  308 (514)
                      +...|...-.++.+...+++|...+...-+.+..+                   .......+.+....|...+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34566666667777777777776666554443211                   12233445556666666665544443


Q ss_pred             HhhcCCCChHHHHHHHHHHhhcCh-hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HH
Q 010276          309 LLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RS  385 (514)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~  385 (514)
                      +....       ..+-.....+.. +..+..+++-+      ..+.+.+..++.-.|.|.-....+.+.++.+|..  ..
T Consensus       148 L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  148 LKTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             HHHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence            32210       011111111222 33444444432      3345667777777888888888888888877554  34


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      ...+|.+..+.|+.+.|..++++.-+..      .....+..+.+.++.-. +++.+|...|.+.+..+|.++.+..+.|
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~-nn~a~a~r~~~~i~~~D~~~~~a~NnKA  293 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ-NNFAEAHRFFTEILRMDPRNAVANNNKA  293 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc-cchHHHHHHHhhccccCCCchhhhchHH
Confidence            5677888888888888888887554322      23345566677777776 7888888888888888888888888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          460 ELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .|....|+..+|++.++.++...|..
T Consensus       294 LcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  294 LCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            88888888888888888888888865

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.79  E-value=4.3e-07  Score=68.20  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=69.9

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEY  289 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l  289 (514)
                      ..++..|...+..|+|.+|++.|+.+....|..   ..+.+.++.+|+..+++++|+..+++.++++|.++   .+++..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            345677999999999999999999999988865   67888999999999999999999999999998874   467777


Q ss_pred             HHHHHHhCC
Q 010276          290 AMLLKVKCD  298 (514)
Q Consensus       290 ~~~~~~~~~  298 (514)
                      |.++..+..
T Consensus        91 gL~~~~~~~   99 (142)
T PF13512_consen   91 GLSYYEQDE   99 (142)
T ss_pred             HHHHHHHhh
Confidence            777776654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=5.3e-08  Score=66.37  Aligned_cols=65  Identities=25%  Similarity=0.179  Sum_probs=35.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      .+|...+++++|+.++++++..+|+++..+..+|.++... |++.+|...|+++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            3455555555555555555555555555555555555555 5555555555555555555544433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=2.3e-07  Score=72.47  Aligned_cols=107  Identities=16%  Similarity=0.082  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-----AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE  460 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  460 (514)
                      +..-|.-++..|+|++|..-|..++...|..     ...+.+.|.++.++ +.++.|+....++++++|.+..++...|.
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            4455888899999999999999999999875     45678899999998 99999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276          461 LHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQ  493 (514)
Q Consensus       461 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~  493 (514)
                      +|.++..+++|++-|+++++.+|... +.-..+.
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            99999999999999999999999863 4443333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.9e-05  Score=70.84  Aligned_cols=246  Identities=14%  Similarity=0.024  Sum_probs=143.9

Q ss_pred             HHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHh---hcccCchhhhhhhhhh
Q 010276           11 LIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQ---YYKIVPKQNSTSSRSS   87 (514)
Q Consensus        11 l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~   87 (514)
                      ++....|.+|+.+...+++....-   .....+...++.-..+.....-++|+.+..-.-+   .....+.....-+...
T Consensus       110 ~yh~~~~g~a~~~~~~lv~r~e~l---e~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~  186 (696)
T KOG2471|consen  110 FYHHEENGSAMQLSSNLVSRTESL---ESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL  186 (696)
T ss_pred             eeeHhhcchHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence            344556777777777666533211   1112222334445556666667777765543222   1111110000011111


Q ss_pred             hhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010276           88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKE  166 (514)
Q Consensus        88 ~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  166 (514)
                      .+.+....|...+.... ...++.....+.++...+...+....+.+... .+++.+.++.++.++..|++.+|.+.+..
T Consensus       187 ~kt~s~~aAe~s~~~a~-~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~  265 (696)
T KOG2471|consen  187 LKTLSPSAAERSFSTAD-LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV  265 (696)
T ss_pred             cccCCcchhcccchhhc-cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh
Confidence            22222222333221111 12344455566777788888888777775333 67888999999999999999999998765


Q ss_pred             HH-hcCCC---CHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHH
Q 010276          167 CL-RHCPF---FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL  242 (514)
Q Consensus       167 ~l-~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  242 (514)
                      .- ...|.   .++...                                   .+....+|.+.++.|.|.-+..+|.+++
T Consensus       266 sni~~~~g~~~T~q~~~-----------------------------------cif~NNlGcIh~~~~~y~~~~~~F~kAL  310 (696)
T KOG2471|consen  266 SNIHKEAGGTITPQLSS-----------------------------------CIFNNNLGCIHYQLGCYQASSVLFLKAL  310 (696)
T ss_pred             cccccccCccccchhhh-----------------------------------heeecCcceEeeehhhHHHHHHHHHHHH
Confidence            32 22222   111110                                   0111233677777788888888887777


Q ss_pred             Hh---------CC---------CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276          243 QR---------FP---------NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV  295 (514)
Q Consensus       243 ~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (514)
                      +.         .|         ..-+++++.|..+...|++-.|.++|.++......+|..|..++.+...
T Consensus       311 ~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  311 RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            40         11         2356888889999999999999999999999888889999999888765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.74  E-value=8.7e-08  Score=65.27  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=48.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      ..++...+++++|+.++++++..+|+++..+..+|.++...|++++|...++++++..|+++.+....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            34566677777777777777777777777777777777777777777777777777777766554433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=2.9e-05  Score=69.65  Aligned_cols=316  Identities=15%  Similarity=0.122  Sum_probs=188.4

Q ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHhcC--CCCCc--------cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH
Q 010276          106 NENEVKYKIASCHFALGETKAAIVEMEGI--PSKAR--------NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI  175 (514)
Q Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  175 (514)
                      +.+...+..+..++..|++..|.+.+...  ...+.        .--.|..+|.++++.|.|.-+..+|.++++.     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N-----  312 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN-----  312 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH-----
Confidence            55677888899999999999999998874  22222        2234578999999999999999999999971     


Q ss_pred             HHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 010276          176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM  255 (514)
Q Consensus       176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  255 (514)
                       ....|.. +....               ..-...........|..|..++..|+.-.|.++|.++...+..+|.+|..+
T Consensus       313 -~c~qL~~-g~~~~---------------~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl  375 (696)
T KOG2471|consen  313 -SCSQLRN-GLKPA---------------KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL  375 (696)
T ss_pred             -HHHHHhc-cCCCC---------------cceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence             1111111 00000               000112234455678889999999999999999999999999999999999


Q ss_pred             HHHHHHhCC---hHHHHHHHHH--------------HHhh-------CCCC---HHHHHHHHHHHHHhCCh-----hHHH
Q 010276          256 AKVDAIIGK---NDEAILNFEK--------------VRSI-------DPYI---MTYMDEYAMLLKVKCDY-----SKLS  303 (514)
Q Consensus       256 a~~~~~~~~---~~~A~~~~~~--------------~~~~-------~~~~---~~~~~~l~~~~~~~~~~-----~~A~  303 (514)
                      |.+.+...+   .++......+              .+-+       .|..   +..-..++.+..+.+-+     ..--
T Consensus       376 AEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~  455 (696)
T KOG2471|consen  376 AECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLG  455 (696)
T ss_pred             HHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcch
Confidence            998875322   1111111111              0000       0000   11112222222221100     0000


Q ss_pred             HHHHHHh-----------------------------hcCCCCh----H-------HHHHHHHHHhh-cChhHHHHHHHHH
Q 010276          304 KLVHDLL-----------------------------SIDPSRP----E-------VFVALSVLWER-KDERGALSYAEKS  342 (514)
Q Consensus       304 ~~~~~~~-----------------------------~~~~~~~----~-------~~~~l~~~~~~-~~~~~A~~~~~~~  342 (514)
                      ..+.-+.                             ...|..|    +       ++-..+.+-.. |+.-.|+..-++.
T Consensus       456 ~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kL  535 (696)
T KOG2471|consen  456 SILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKL  535 (696)
T ss_pred             hhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence            0000000                             0000111    1       11222222222 8888888888888


Q ss_pred             HHhcccCchhHHHHHHH-----HHhcCChHHHHHHHHHhH------h-----------------hcCCh-----------
Q 010276          343 IRIDERHIPGYIMKGNL-----LLSMKRPEAAVIAFRGAQ------E-----------------LRPDL-----------  383 (514)
Q Consensus       343 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~~~------~-----------------~~~~~-----------  383 (514)
                      ++. |+...++..+|.+     ++.+.+..+|...+.--.      .                 ++|..           
T Consensus       536 Lq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv  614 (696)
T KOG2471|consen  536 LQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSV  614 (696)
T ss_pred             Hhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCH
Confidence            765 3445565555554     456788888877665411      0                 11110           


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          384 -----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       384 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                           ..++++|.++.-+|++++|..++..+..+-|  .++.+....-.+-... |+...|...+++.-
T Consensus       615 ~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~-G~~q~al~~lk~~~  682 (696)
T KOG2471|consen  615 EEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLML-GRSQDALARLKQCT  682 (696)
T ss_pred             HHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhc-CCCcchHHHHHhcc
Confidence                 1368999999999999999999999988777  3455554444444555 99999998888753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.67  E-value=7.9e-07  Score=64.26  Aligned_cols=99  Identities=16%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh----HHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL----GAALALAEL  461 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~  461 (514)
                      +-.-|......|+.+.|++.|.+++.+.|..+.++++.+..+.-. |+.++|+..+.+++++..+..    .++...|.+
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            455688888899999999999999999999999999999999988 999999999999999864432    367788999


Q ss_pred             HHHcCChhHHHHHHHHHHhhCCCc
Q 010276          462 HVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       462 ~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      |...|+.+.|..-|+.+.++...-
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999998887553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.67  E-value=7e-05  Score=70.77  Aligned_cols=49  Identities=16%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             HhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276          119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC  167 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  167 (514)
                      +..|+++.|...++.....|.....|..++.+....|+.--|..+|..+
T Consensus       455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai  503 (1636)
T KOG3616|consen  455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI  503 (1636)
T ss_pred             cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4678999999999999888999999999999999999988888887654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=6.3e-05  Score=60.87  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHHHHHHhcccCch------hHHHHHHHHHhc-CChHHHHHHHHHhHhhcCCh-------
Q 010276          318 EVFVALSVLWERKDERGALSYAEKSIRIDERHIP------GYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL-------  383 (514)
Q Consensus       318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~-------  383 (514)
                      ..+...+.+|...++.+|+.++++++++..+-..      .+..+|.+|... .++++|+.+|+++-+.....       
T Consensus        75 t~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN  154 (288)
T KOG1586|consen   75 TTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN  154 (288)
T ss_pred             HHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence            3445556677778888888888888887655332      345778887665 88999999999987764432       


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      ..+...+..-...++|.+|+..|++.....-+++       ..++.-|.|+... .+.-.+...+++-.+++|.....
T Consensus       155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~-~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK-ADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc-ccHHHHHHHHHHHHhcCCccccc
Confidence            3456667777888999999999999887655543       3445667777776 88888888888888899976553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=0.0005  Score=62.03  Aligned_cols=368  Identities=15%  Similarity=0.063  Sum_probs=222.8

Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHhcCCCC--Cc--cHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276          109 EVKYKIASCHFALG--ETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYR-NSRHNRGAVACYKECLRHCPFFIEAITAL  181 (514)
Q Consensus       109 ~~~~~la~~~~~~g--~~~~A~~~~~~~~~~--~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  181 (514)
                      .++..+|..+...|  +...++..++.+...  |.  .......+|.+++ ...+.+.|...++++..+...-+..+.  
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd--   85 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD--   85 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh--
Confidence            45677888888888  889999999986332  22  3445677777654 578999999999998754322111110  


Q ss_pred             HHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcH----HHHHHHH
Q 010276          182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNI----HILLEMA  256 (514)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~----~~~~~la  256 (514)
                                                     ..+...-.++.++.... .+..+...++++++.....|    ...+.++
T Consensus        86 -------------------------------vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLa  134 (629)
T KOG2300|consen   86 -------------------------------VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLA  134 (629)
T ss_pred             -------------------------------hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence                                           01111234477776665 78889999999998766654    4667889


Q ss_pred             HHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHHHH--HHHHHHhCC---hhHHHHHHHHHhhcCCCChH-------HH
Q 010276          257 KVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEY--AMLLKVKCD---YSKLSKLVHDLLSIDPSRPE-------VF  320 (514)
Q Consensus       257 ~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l--~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-------~~  320 (514)
                      .++.-..++..|++.+.-..+. ++..   ....+.+  +.++....+   ...+.....++.+....++.       .+
T Consensus       135 ql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy  214 (629)
T KOG2300|consen  135 QLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY  214 (629)
T ss_pred             HHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence            9999999999998885433221 1111   1122222  223333333   34445555555554433332       22


Q ss_pred             HHHHHHHhh--cChhHHHHHHH---HHHHh-ccc-----------C-ch--hHHH----HHHHH-------HhcCChHHH
Q 010276          321 VALSVLWER--KDERGALSYAE---KSIRI-DER-----------H-IP--GYIM----KGNLL-------LSMKRPEAA  369 (514)
Q Consensus       321 ~~l~~~~~~--~~~~~A~~~~~---~~~~~-~~~-----------~-~~--~~~~----~~~~~-------~~~~~~~~A  369 (514)
                      ..+...|..  |+...+...++   +.+.. .+.           + +.  .|.-    -+.+|       ...|-+++|
T Consensus       215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~  294 (629)
T KOG2300|consen  215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA  294 (629)
T ss_pred             HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence            233333333  66654444444   33332 111           0 00  0110    01111       234667777


Q ss_pred             HHHHHHhHhhcCC-------hH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHH
Q 010276          370 VIAFRGAQELRPD-------LR--------SYQGLVHSYLQFSKVKEALYAAREAMKA---MPQ-------SAKALKLVG  424 (514)
Q Consensus       370 ~~~~~~~~~~~~~-------~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~l~  424 (514)
                      .++-++++.....       .+        .+-.++.+-.-.|++.+|++....+.+.   .|.       .+.+++.+|
T Consensus       295 ~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG  374 (629)
T KOG2300|consen  295 QKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG  374 (629)
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence            7777777654211       12        1345566777789999999888777653   344       245667788


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-----------hHHHH
Q 010276          425 DVHASNASGREKAKKFYESALRLEPG-Y--LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----------SLHVK  490 (514)
Q Consensus       425 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~  490 (514)
                      ...... +.++.|...|..+.+.-.. +  .....++|..|.+.|+-+.-.+.++..   .|.+           .+++.
T Consensus       375 lys~sv-~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v  450 (629)
T KOG2300|consen  375 LYSHSV-NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYV  450 (629)
T ss_pred             hHhhhc-chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHH
Confidence            777777 8899999999999886432 2  224567899999988776655555543   3331           47777


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhc
Q 010276          491 LAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .|...+.+|++.||.....+.++
T Consensus       451 ~glfaf~qn~lnEaK~~l~e~Lk  473 (629)
T KOG2300|consen  451 YGLFAFKQNDLNEAKRFLRETLK  473 (629)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHh
Confidence            88888899999999998888775

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.54  E-value=2.4e-06  Score=61.87  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKLVGDVH  427 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~  427 (514)
                      +-..|..+...|+.+.|++.|.+++.+.|.. .+|++.+..+.-+|+.++|+..+++++++..+.    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            3456888888999999999999999999988 789999999999999999999999999876543    35678889999


Q ss_pred             HhcCCChHHHHHHHHHHHhhCCC
Q 010276          428 ASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      ... |+.+.|...|+.+-++...
T Consensus       126 Rl~-g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLL-GNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHh-CchHHHHHhHHHHHHhCCH
Confidence            988 9999999999999888654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=9.7e-07  Score=79.44  Aligned_cols=67  Identities=24%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          380 RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA---LKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       380 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      +|++ .+|+++|.+|...|++++|+..|+++++++|++..+   |+++|.+|..+ |+.++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            4555 677888888888888888888888888888887744   78888888887 8888888888888876

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=0.00023  Score=58.80  Aligned_cols=216  Identities=12%  Similarity=0.062  Sum_probs=152.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-------------CCc-----H-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 010276          222 AQCCIASNDYKGGLELFAELLQRF-------------PNN-----I-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI  282 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~-------------p~~-----~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  282 (514)
                      -.++.+...+++|..-+...-+.+             |+.     | ......|.+....|+..+.+.-+......    
T Consensus        76 ~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~----  151 (366)
T KOG2796|consen   76 LALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV----  151 (366)
T ss_pred             HHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----
Confidence            445556666777766655544322             221     1 22334466666777777776655554332    


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLL  360 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~  360 (514)
                         ..............+..++.+++-+.      .+.+.+..++.. |.|.-.+..+.+.++.+ |..+.....+|.+.
T Consensus       152 ---V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~  222 (366)
T KOG2796|consen  152 ---VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS  222 (366)
T ss_pred             ---HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence               11222233333333555555555433      334444444444 88999999999999988 56677788899999


Q ss_pred             HhcCChHHHHHHHHHhHhhcCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276          361 LSMKRPEAAVIAFRGAQELRPD-------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG  433 (514)
Q Consensus       361 ~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  433 (514)
                      ++.|+.+.|..+|+++-+....       ..+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.|+... |+
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~  301 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GK  301 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HH
Confidence            9999999999999976543221       145677888899999999999999999999999999999999999998 99


Q ss_pred             hHHHHHHHHHHHhhCCCC
Q 010276          434 REKAKKFYESALRLEPGY  451 (514)
Q Consensus       434 ~~~A~~~~~~a~~~~~~~  451 (514)
                      ...|++..+.++...|..
T Consensus       302 l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHhccCCcc
Confidence            999999999999999875

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.52  E-value=0.00069  Score=60.73  Aligned_cols=148  Identities=12%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHH-HHHHHHHhcCC
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKY-KIASCHFALGE  123 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~la~~~~~~g~  123 (514)
                      .+...|-++-+++++.+|.+.|.++.+...+.+....                          .++.. ++-.++ -+++
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lk--------------------------eEvl~grilnAf-fl~n   60 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLK--------------------------EEVLGGRILNAF-FLNN   60 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHH--------------------------HHHHhhHHHHHH-HHhh
Confidence            4456788899999999999999999877543332211                          12222 122222 2333


Q ss_pred             HHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276          124 TKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS  202 (514)
Q Consensus       124 ~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  202 (514)
                      .+.-...+..+. ..|..+......|...++.|.+.+|++.+......-......|... ++.                 
T Consensus        61 ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~-ni~-----------------  122 (549)
T PF07079_consen   61 LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDT-NIQ-----------------  122 (549)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhh-hHH-----------------
Confidence            333332222221 2356777778889999999999999999887765533333333221 000                 


Q ss_pred             CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 010276          203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR  244 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  244 (514)
                             .--+++..-...|.++...|++.++..++++++..
T Consensus       123 -------~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  123 -------QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             -------HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence                   00122233346689999999999999999998863

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.51  E-value=5.1e-07  Score=81.19  Aligned_cols=70  Identities=24%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA---ALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      .+|+++..++++|.+|... |++++|+..|+++++++|++.++   |+++|.+|..+|++++|+..++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            5788999999999999998 99999999999999999999865   9999999999999999999999999974

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.51  E-value=1.5e-07  Score=64.96  Aligned_cols=62  Identities=27%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC---CCc-----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD-----SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ..++.++|.++..+|++++|+.+|++++++.   +++     .++.++|.++..+|++++|+++|+++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566667777777777777777777776542   111     3666777777777777777777777765

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.51  E-value=0.00086  Score=61.48  Aligned_cols=407  Identities=13%  Similarity=0.101  Sum_probs=245.1

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      .+.+..+|+.+-+.+-.+ -+++..+.|++.+...|..+.+|...                               ....
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~y-------------------------------i~~E   63 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLY-------------------------------IERE   63 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHH-------------------------------HHHH
Confidence            345677899998887777 99999999999999988766655443                               3444


Q ss_pred             HhcCCHHHHHHHHhcCCCCCccHHHHHHH-HHHHHhcCChhhHH----HHHHHHH---hcCCCCHHHHHHHHHhccCcc-
Q 010276          119 FALGETKAAIVEMEGIPSKARNLQMSLLM-AKLYRNSRHNRGAV----ACYKECL---RHCPFFIEAITALAELGATPK-  189 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~----~~~~~~l---~~~p~~~~~~~~l~~~~~~~~-  189 (514)
                      ++.++|+....+|.+.....-+.+.|... ..+-...|+...+.    +.|+-++   ..++.+..+|........... 
T Consensus        64 l~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea  143 (656)
T KOG1914|consen   64 LASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA  143 (656)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccc
Confidence            56677777777777654444456666433 33333344433322    2333333   345666667766554432211 


Q ss_pred             --cH---------hHHHhccCCcCCCCCCCcCCchhHHhH------H--HHHH--HHHHhcCHHHHHHHHHHHHHh----
Q 010276          190 --DI---------ISLFAQTPNRSGRAPFDHLDSSRWLHR------Y--VEAQ--CCIASNDYKGGLELFAELLQR----  244 (514)
Q Consensus       190 --~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~a~--~~~~~~~~~~A~~~~~~~~~~----  244 (514)
                        .+         ...+.++...    |. +.-..-|..+      .  ..|.  +.-....|-.|...+++....    
T Consensus       144 ~gk~ee~QRI~~vRriYqral~t----Pm-~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL  218 (656)
T KOG1914|consen  144 VGKYEENQRITAVRRIYQRALVT----PM-HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGL  218 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHhcC----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh
Confidence              11         1112222211    10 0001111111      0  1111  122334566777777766541    


Q ss_pred             ---CCC----c-------HHHHHHHHHHHHHhC------C--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----
Q 010276          245 ---FPN----N-------IHILLEMAKVDAIIG------K--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD----  298 (514)
Q Consensus       245 ---~p~----~-------~~~~~~la~~~~~~~------~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  298 (514)
                         +|.    .       .+.|..+...-...+      .  ...-.-.+++++..-+..++.|+..+..+...++    
T Consensus       219 ~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~  298 (656)
T KOG1914|consen  219 NRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTE  298 (656)
T ss_pred             cccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence               111    1       122322222111111      0  1123334667777777778888777776666665    


Q ss_pred             ----------hhHHHHHHHHHhhcCC-CChHHHHHHHHHHhh----cChhHHHHHHHHHHHhcccCch-hHHHHHHHHHh
Q 010276          299 ----------YSKLSKLVHDLLSIDP-SRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIP-GYIMKGNLLLS  362 (514)
Q Consensus       299 ----------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~  362 (514)
                                .+++..++++++.... .+...++.++..-..    .+++.....+++++.+...++. ++..+-+.-.+
T Consensus       299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR  378 (656)
T KOG1914|consen  299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR  378 (656)
T ss_pred             hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH
Confidence                      5778888888776432 233344444443332    2355667777777776544433 45556666666


Q ss_pred             cCChHHHHHHHHHhHhhcCCh-HHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276          363 MKRPEAAVIAFRGAQELRPDL-RSYQGLV-HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF  440 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~  440 (514)
                      ..-...|...|.++-+..-.. .++..-| .-|..+++..-|..+|+-.++..++++..-......+... ++-..+...
T Consensus       379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l-Ndd~N~R~L  457 (656)
T KOG1914|consen  379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL-NDDNNARAL  457 (656)
T ss_pred             hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CcchhHHHH
Confidence            677888888998886653332 3443333 2345689999999999999999999999999999999998 999999999


Q ss_pred             HHHHHhh--CCC-ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          441 YESALRL--EPG-YLGAALALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       441 ~~~a~~~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      |++++..  .|+ ..++|..+-.....-|+....+++-++-....|
T Consensus       458 FEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  458 FERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            9999986  333 246888888888899999999988888777666

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.0018  Score=64.00  Aligned_cols=255  Identities=15%  Similarity=0.124  Sum_probs=138.3

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      |...++.|...+|++.|-++     ++|..+.....+..+.|.|++-+.++..+-+... .+..-..+...|.+.++..+
T Consensus      1111 akAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred             HHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHH
Confidence            56666666666666666544     4455566666666666677666666665544321 12222334445555555544


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276          302 LSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP  381 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  381 (514)
                      -.+..     ..|+.......--.++..+.|+.|.-+|..        ...|..++..+...|+|+.|...-+++-    
T Consensus      1185 lE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn---- 1247 (1666)
T KOG0985|consen 1185 LEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN---- 1247 (1666)
T ss_pred             HHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence            43332     234444443333335555666666555543        3446667777788888888887777662    


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                      +...|...+.++...+.+.-|.-+=-..    --+++-+-.+...|... |-+++-+..++.++.+...+...+..||.+
T Consensus      1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~r-GyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDR-GYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred             chhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhc-CcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence            2245555555555555444332211000    01233444555566666 777777777777777766666666666666


Q ss_pred             HHHcCChhHHHHHHHHHHhhC--C-------CchHHHHHHHHHHHhccHHHHH
Q 010276          462 HVIEGRNGDAVSLLERYLKDW--A-------DDSLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       462 ~~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~  505 (514)
                      |.+- ++++-.+.++-....-  |       ....|..+..+|.+-..++.|.
T Consensus      1323 Ysky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            6543 3444444444333321  1       1135666666666666665554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.47  E-value=2.7e-06  Score=66.08  Aligned_cols=64  Identities=22%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK----------VKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                      |+.|.+.++.....+|.+ +.+++-|.++..+.+          +++|+.-|++++.++|+..++++++|.++..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            344445555555555554 444444444443321          2333444444444444444444444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.46  E-value=0.0021  Score=63.81  Aligned_cols=416  Identities=14%  Similarity=0.033  Sum_probs=223.0

Q ss_pred             CCCCChhhhHHHHHHHHhhHh-hhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHH
Q 010276           34 NGETSPHLKAENLIILGDSLF-RDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKY  112 (514)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  112 (514)
                      ....+|...+.+.+.+|.+++ ...+++.|..++++++.+... ++....                        .....+
T Consensus        50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~------------------------k~~~~~  104 (608)
T PF10345_consen   50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDL------------------------KFRCQF  104 (608)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHH------------------------HHHHHH
Confidence            455678899999999999999 568999999999999888643 211111                        122344


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCC----CccHHHH---HHHHHHHHhcCChhhHHHHHHHHHhcC--CCCHHHHHHHHH
Q 010276          113 KIASCHFALGETKAAIVEMEGIPSK----ARNLQMS---LLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITALAE  183 (514)
Q Consensus       113 ~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~  183 (514)
                      .+++++.+.+... |...+++....    +.....+   +.....+...+++..|+..++.+....  +.++.+....  
T Consensus       105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~--  181 (608)
T PF10345_consen  105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA--  181 (608)
T ss_pred             HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH--
Confidence            5678887777766 88887773211    2222222   222444444589999999999988665  3444444322  


Q ss_pred             hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh------C----CCcHHHHH
Q 010276          184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------F----PNNIHILL  253 (514)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~----p~~~~~~~  253 (514)
                                                        .+..+.+....+..+++++..+++...      +    +....++.
T Consensus       182 ----------------------------------~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~  227 (608)
T PF10345_consen  182 ----------------------------------SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALF  227 (608)
T ss_pred             ----------------------------------HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence                                              122244444444444555554444221      0    11122222


Q ss_pred             HHHH--HHHHhCChHHHHHHHHHHH---h---hCC--------------------------CC----------HHHHHHH
Q 010276          254 EMAK--VDAIIGKNDEAILNFEKVR---S---IDP--------------------------YI----------MTYMDEY  289 (514)
Q Consensus       254 ~la~--~~~~~~~~~~A~~~~~~~~---~---~~~--------------------------~~----------~~~~~~l  289 (514)
                      .+-.  ++...|+++.+...++..-   +   ..|                          ..          .-++..-
T Consensus       228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS  307 (608)
T PF10345_consen  228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS  307 (608)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence            2222  2333444444433333221   1   010                          00          0112222


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcC-------CCC---h-------HHH---------HHHHHHHhh-cChhHHHHHHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSID-------PSR---P-------EVF---------VALSVLWER-KDERGALSYAEKS  342 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~-------~~~---------~~l~~~~~~-~~~~~A~~~~~~~  342 (514)
                      |......|..++|.+++.++++.-       +..   +       ..|         ...+..... +++..+......+
T Consensus       308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~  387 (608)
T PF10345_consen  308 GLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFM  387 (608)
T ss_pred             HHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            344444555556666655554321       111   0       111         111111111 8888888888877


Q ss_pred             HHhc---cc------CchhHHHHHHHHHhcCChHHHHHHHH--------HhHhhcCChH----HHHHHHHHHHhcCCHHH
Q 010276          343 IRID---ER------HIPGYIMKGNLLLSMKRPEAAVIAFR--------GAQELRPDLR----SYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       343 ~~~~---~~------~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~----~~~~l~~~~~~~~~~~~  401 (514)
                      ....   |.      .+..++..|..+...|+.+.|...|.        .+....+..+    +..++..++...+....
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  388 RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence            6543   22      35678889999999999999999998        4444444443    24556666665554333


Q ss_pred             ----HHHHHHHHHhhCCCCHH-----HHHHHHHHHHhc-CCChHHHHHHHHHHHhhC-C--CC----hHHHHHHHHHHHH
Q 010276          402 ----ALYAAREAMKAMPQSAK-----ALKLVGDVHASN-ASGREKAKKFYESALRLE-P--GY----LGAALALAELHVI  464 (514)
Q Consensus       402 ----A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~la~~~~~  464 (514)
                          ....+++.-....+.+.     .+..+-.++... .-...++...+..+++.. .  ++    .-++.-++..++ 
T Consensus       468 ~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-  546 (608)
T PF10345_consen  468 SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-  546 (608)
T ss_pred             hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-
Confidence                33444333222111111     122221112111 123357777777777654 1  11    124445666666 


Q ss_pred             cCChhHHHHHHHHHHhhCC---Cc--hHHH-----HHHHHHHHhccHHHHHHHHHHHh
Q 010276          465 EGRNGDAVSLLERYLKDWA---DD--SLHV-----KLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~---~~--~~~~-----~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      .|+..+.......+.....   +.  ..|.     .+...+...|+.++|.....+.-
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            7888887777777666543   22  2442     34566888899999998877653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.46  E-value=0.0014  Score=61.26  Aligned_cols=338  Identities=13%  Similarity=0.011  Sum_probs=189.0

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH
Q 010276          136 SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW  215 (514)
Q Consensus       136 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (514)
                      .-|.....|...|..-.+.|..+.+.++|++++..-|.+...|..+.                                 
T Consensus        74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~---------------------------------  120 (577)
T KOG1258|consen   74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL---------------------------------  120 (577)
T ss_pred             hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH---------------------------------
Confidence            34666666777777777777777777777777777776666665441                                 


Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML  292 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  292 (514)
                            +.+--..|+...-...|+++......+   ...|-.....-..++++..-...|++.++..-.....++..-.-
T Consensus       121 ------~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~  194 (577)
T KOG1258|consen  121 ------AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ  194 (577)
T ss_pred             ------HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence                  222235567777777777776644332   34555555555666777777777777776533322222221111


Q ss_pred             HHH------hCChhHHHHHHHHHhhc--CCCC--h-HH------------------HHHHHHHHhh--------cChhHH
Q 010276          293 LKV------KCDYSKLSKLVHDLLSI--DPSR--P-EV------------------FVALSVLWER--------KDERGA  335 (514)
Q Consensus       293 ~~~------~~~~~~A~~~~~~~~~~--~~~~--~-~~------------------~~~l~~~~~~--------~~~~~A  335 (514)
                      +..      .-..+++.+.-......  .+..  + +.                  ...+......        ....+.
T Consensus       195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK  274 (577)
T ss_pred             HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence            111      22334444333333321  0000  0 00                  0000000000        011111


Q ss_pred             HHHHHHHHHh-----cc---cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          336 LSYAEKSIRI-----DE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       336 ~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      +-.++..+..     .|   .+...|..........|+++...-.|++++--.... ..|...+......|+.+-|...+
T Consensus       275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~  354 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL  354 (577)
T ss_pred             HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence            2222222211     11   112335555666677788888888888877666555 67777777777778888887777


Q ss_pred             HHHHhhC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH---HHHHHHhhC
Q 010276          407 REAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS---LLERYLKDW  482 (514)
Q Consensus       407 ~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~~~~~  482 (514)
                      .++.+.. |..+.+...-+.+-... |++..|...+++..+--|+...+-...+....+.|+.+.+..   ++.....-.
T Consensus       355 ~~~~~i~~k~~~~i~L~~a~f~e~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~  433 (577)
T KOG1258|consen  355 ARACKIHVKKTPIIHLLEARFEESN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK  433 (577)
T ss_pred             HhhhhhcCCCCcHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence            7777654 55566666666666666 888888888888887778877777777777777788777773   333222222


Q ss_pred             CCc----hHHHHHHHHH-HHhccHHHHHHHHHHHhc
Q 010276          483 ADD----SLHVKLAQVF-AATNMLQEALSHYEAALR  513 (514)
Q Consensus       483 ~~~----~~~~~l~~~~-~~~g~~~~A~~~~~~al~  513 (514)
                      .+.    ..+...+... .-.++.+.|...+.++++
T Consensus       434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~  469 (577)
T KOG1258|consen  434 ENNGILEKLYVKFARLRYKIREDADLARIILLEAND  469 (577)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            122    2333344332 334677777777776654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=0.0002  Score=58.05  Aligned_cols=191  Identities=17%  Similarity=0.218  Sum_probs=118.0

Q ss_pred             hhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc
Q 010276           54 FRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG  133 (514)
Q Consensus        54 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (514)
                      ...+.|++|.++|.++-....        ++....                 ....+....|.++.+.|.-.+|      
T Consensus        25 gg~~k~eeAadl~~~Aan~yk--------laK~w~-----------------~AG~aflkaA~~h~k~~skhDa------   73 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERAANMYK--------LAKNWS-----------------AAGDAFLKAADLHLKAGSKHDA------   73 (288)
T ss_pred             CCCcchHHHHHHHHHHHHHHH--------HHHhHH-----------------HHHHHHHHHHHHHHhcCCchhH------
Confidence            344689999999999866521        000000                 1233444555555554443333      


Q ss_pred             CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch
Q 010276          134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (514)
                             ...+...+.+|. .+++.+|+.++++++++..+-......- .                              
T Consensus        74 -------at~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aA-k------------------------------  114 (288)
T KOG1586|consen   74 -------ATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAA-K------------------------------  114 (288)
T ss_pred             -------HHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHH-h------------------------------
Confidence                   334455555654 4589999999999887654322211100 0                              


Q ss_pred             hHHhHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---
Q 010276          214 RWLHRYVEAQCCIAS-NDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---  283 (514)
Q Consensus       214 ~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---  283 (514)
                         .....|.+|-.. .++++|+..|+++-+.....      ...+...+..-...++|.+|+..|+++....-++.   
T Consensus       115 ---~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  115 ---HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             ---hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence               012236666554 78888999998887644322      34666777778888999999999999887655543   


Q ss_pred             ----HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh
Q 010276          284 ----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP  317 (514)
Q Consensus       284 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  317 (514)
                          ..++.-|.++....+.-.+...+++..+.+|...
T Consensus       192 ys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  192 YSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             hHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence                3345556677777777777777777778888654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.43  E-value=3.5e-07  Score=63.20  Aligned_cols=65  Identities=20%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CCCC---hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      -..++.++|.++... |++++|+.+|++++++    .+++   ..++.++|.++...|++++|++++++++++
T Consensus         4 ~a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345566666666666 6666666666666653    1111   335666777777777777777777777654

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.43  E-value=0.00013  Score=69.15  Aligned_cols=154  Identities=19%  Similarity=0.145  Sum_probs=119.9

Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCCh-HH--------HHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RS--------YQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                      -.+.--.|+-+.++..+.++.+ .++. ..        |+.......    .....+.|.+.++......|+.+-.++..
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~  273 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE  273 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3334456899999999999876 3332 11        222222222    24577889999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHH
Q 010276          424 GDVHASNASGREKAKKFYESALRLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAA  497 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~  497 (514)
                      |+++... |+.++|++.|++++......+    -.++.+++++..+++|++|...+.+..+...-+.  ..+..|.|+..
T Consensus       274 gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  274 GRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM  352 (468)
T ss_pred             HHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            9999998 999999999999886443332    3678899999999999999999999998776554  55566899999


Q ss_pred             hccH-------HHHHHHHHHHh
Q 010276          498 TNML-------QEALSHYEAAL  512 (514)
Q Consensus       498 ~g~~-------~~A~~~~~~al  512 (514)
                      .|+.       ++|.+.|+++-
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHH
Confidence            9999       88888888764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.3e-05  Score=68.35  Aligned_cols=155  Identities=13%  Similarity=0.030  Sum_probs=107.4

Q ss_pred             HHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-cCChHH----HHHHHHHHHhcCC
Q 010276          324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRS----YQGLVHSYLQFSK  398 (514)
Q Consensus       324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~  398 (514)
                      +.+..+|++.+|....++.++..|.+.-++..--.+++..|+...-...+++++.. +|+.+.    .-.++..+...|-
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            33444477778888888888888888777777777778888888888888777766 555432    2344666677788


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCChhHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSL  474 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~  474 (514)
                      +++|.+..+++++++|.+..+....+.++... |++.++.++..+.-..-...    ..-|...+.++...+.|+.|+++
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            88888888888888888888878888887776 88888877776643221110    12344566667777788888887


Q ss_pred             HHHHH
Q 010276          475 LERYL  479 (514)
Q Consensus       475 ~~~~~  479 (514)
                      |.+-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            77643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.003  Score=62.50  Aligned_cols=286  Identities=13%  Similarity=0.111  Sum_probs=182.5

Q ss_pred             HHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHH
Q 010276           49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI  128 (514)
Q Consensus        49 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  128 (514)
                      .|.+....+-|++|...|++-- .+..-...+.      ...+..+.|.+  -....+.+.++.++|...+..|...+|+
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLi------e~i~~ldRA~e--fAe~~n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLI------ENIGSLDRAYE--FAERCNEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHH------HHhhhHHHHHH--HHHhhCChHHHHHHHHHHHhcCchHHHH
Confidence            4667777888888888887621 1000000000      00001111100  0123467899999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCC-HHHHHHHHHhccCcccHhHHHhccCCcCCCC
Q 010276          129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFF-IEAITALAELGATPKDIISLFAQTPNRSGRA  205 (514)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  205 (514)
                      +.+-+.    ++|..+.....+..+.|.|++-++++..+-+..  |.- .+....++... ...+.++.+.         
T Consensus      1125 eSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~-rl~elE~fi~--------- 1190 (1666)
T KOG0985|consen 1125 ESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN-RLTELEEFIA--------- 1190 (1666)
T ss_pred             HHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc-hHHHHHHHhc---------
Confidence            987654    678888888999999999999999998876543  322 22222232221 1111111110         


Q ss_pred             CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----
Q 010276          206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-----  280 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----  280 (514)
                            ..+....-..|.-++..|.|+.|.-+|..+        .-|..++..+..+|+|..|...-+++-....     
T Consensus      1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred             ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence                  011111223488889999999998888754        4567888888999999999888877643210     


Q ss_pred             ------C--------------CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276          281 ------Y--------------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE  340 (514)
Q Consensus       281 ------~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~  340 (514)
                            .              +.+-+-.+...|...|-+++-+.+++.++.+..-+-..+..+|.+|..-++++-.+.++
T Consensus      1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred             HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                  0              13445567788888999999999999998888888888888898888866666655555


Q ss_pred             HHHHh--------cccCchhHHHHHHHHHhcCChHHHHH
Q 010276          341 KSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVI  371 (514)
Q Consensus       341 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~  371 (514)
                      -....        ..+....|..+..+|.+-..|+.|.-
T Consensus      1337 LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1337 LFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            43321        11224456667777777777776643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.0001  Score=60.12  Aligned_cols=205  Identities=12%  Similarity=0.085  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      +..+..-+..|...++|++|..++.+|++-..++.                                .++.-      .+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------------------------slfhA------AK   72 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------------------------SLFHA------AK   72 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------------------------cHHHH------HH
Confidence            44556666777777889999999988886543222                                11111      12


Q ss_pred             CHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276          123 ETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS  202 (514)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  202 (514)
                      -++.|.-+++.+..-+.-.+.+..-...|...|..+-|-..++++-+                                 
T Consensus        73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak---------------------------------  119 (308)
T KOG1585|consen   73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK---------------------------------  119 (308)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH---------------------------------
Confidence            23344444444433333334444444556666666666665555432                                 


Q ss_pred             CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                                            .....+.++|+++|++++.....+      .+.+...++++.+...+++|-..+.+-.
T Consensus       120 ----------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  120 ----------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG  177 (308)
T ss_pred             ----------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence                                  233456667777777766532221      3456667788888888888887776643


Q ss_pred             hh------CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc----CCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276          277 SI------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAE  340 (514)
Q Consensus       277 ~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~A~~~~~  340 (514)
                      ..      .|+....+.....++....++..|..+++...+.    .|++..+..+|-..|..|+.++..+.+.
T Consensus       178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence            32      2333445555566667777888998888886654    3445566666666777788777666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=9.6e-05  Score=63.23  Aligned_cols=156  Identities=13%  Similarity=0.028  Sum_probs=109.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHhC
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEYAMLLKVKC  297 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~  297 (514)
                      +......|++.+|....+++++..|.+.-++..--.+++..|+...-...+++++.. +|+.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            455566778888888888888888887777766667777778887777778877765 5544   345556677777788


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      -+++|.+..+++++++|.+..+....+.++.. +++.++.++..+.-..-...    ...|..-+.++...+.|+.|+++
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            88888888888888888887777777777766 77777777766543221110    12244566677777888888888


Q ss_pred             HHHhH
Q 010276          373 FRGAQ  377 (514)
Q Consensus       373 ~~~~~  377 (514)
                      |.+-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            76543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.37  E-value=2.8e-05  Score=68.48  Aligned_cols=137  Identities=12%  Similarity=0.116  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS  362 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      +|..+.....+.+..+.|..+|.++....+....+|...|.+...  ++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777778888888888876666667777777776444  555568888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHhHhhcCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 010276          363 MKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK  421 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  421 (514)
                      .|+.+.|..+|++++..-|...    .|......-...|+.+....+.+++.+..|++.....
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            8888888888888887766654    6777777778888888888888888888877554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=6.5e-06  Score=66.59  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR  434 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  434 (514)
                      -|+.++.-.+|..|+.+|.+++.++|.. ..|.+.+.++++.++++.+....++++++.|+....++.+|...... ..+
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~   94 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGY   94 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccc
Confidence            4555666667777777777777777776 45666777777777777777777777777777777777777777776 777


Q ss_pred             HHHHHHHHHHHhh
Q 010276          435 EKAKKFYESALRL  447 (514)
Q Consensus       435 ~~A~~~~~~a~~~  447 (514)
                      ++|+..++++..+
T Consensus        95 ~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   95 DEAIKVLQRAYSL  107 (284)
T ss_pred             cHHHHHHHHHHHH
Confidence            7777777777554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.32  E-value=1e-05  Score=62.88  Aligned_cols=67  Identities=12%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      |+.|.+.++.....+|.+++.++..|.++..+.+          +++|+.-|++++.++|+..+++..+|.++...+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            5778888888888899999988888888776644          345666667777777777777777777776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00034  Score=57.20  Aligned_cols=191  Identities=15%  Similarity=0.093  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-----CCC-
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-----PSR-  316 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-  316 (514)
                      ...+..-+.+|....++++|..++.++.+-..++      ..++-..+.+......+.++..+++++....     |+. 
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            3445555667777778888888887777543333      2344555666666777777777777776542     111 


Q ss_pred             hHHHHHHHHHHhhcChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhHhh------cCCh-
Q 010276          317 PEVFVALSVLWERKDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------RPDL-  383 (514)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~-  383 (514)
                      ..++-..+.+....++++|+.+|++++.+-..+      .+.+...++++.+..++++|-..+.+-...      .|+. 
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            122333344555577778888887776653332      233455667777777777777666654332      1222 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKA----MPQSAKALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                      ..+.....+++...+|..|..+++...++    .|++..+.-++-..|..  |+.++....+
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~--gD~E~~~kvl  250 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE--GDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc--CCHHHHHHHH
Confidence            34555556666667777777777776553    24455556666555553  6666555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.32  E-value=9.1e-05  Score=67.21  Aligned_cols=191  Identities=12%  Similarity=0.041  Sum_probs=115.1

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChh
Q 010276          254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDER  333 (514)
Q Consensus       254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  333 (514)
                      .+..-..+..+...-++.-.++++++|+.+.++..++.-  ......++.++++++++.....-..-.   .....|..-
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~---~~~~~g~~~  247 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ---FLQHHGHFW  247 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh---hhhcccchh
Confidence            334444556666666666677777777666666655431  122345566666665543211100000   000001100


Q ss_pred             HHHHHHHHHHHhcccC--chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276          334 GALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~  408 (514)
                      +       .....+.+  ..+...+|.+..+.|+.++|++.++..++..|..   .+..++..++...+.+.++...+.+
T Consensus       248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            0       01001111  3345678999999999999999999999887763   5789999999999999999999988


Q ss_pred             HHhh-CCCCHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHhhCCCChHHHH
Q 010276          409 AMKA-MPQSAKALKLVGDVHASNASG---------------REKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       409 ~~~~-~p~~~~~~~~l~~~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      .-+. -|.++...+..+..-.+..++               -..|.+.+.+|++.+|..+..+.
T Consensus       321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            6544 366666666555544332122               13467889999999988765443

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.31  E-value=1.9e-05  Score=69.59  Aligned_cols=136  Identities=15%  Similarity=0.059  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                      +|..+.....+.+..+.|..+|.++.+..+.. ..|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            56777777788888999999999998554433 788888888666 5666669999999999999999999999999998


Q ss_pred             cCCChHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276          430 NASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH  488 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  488 (514)
                      . ++.+.|...|++++..-|...   .+|........+.|+.+....+.+++.+..|+....
T Consensus        83 ~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   83 L-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             T-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             h-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            8 999999999999998766654   588888899999999999999999999998886533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.30  E-value=5.3e-05  Score=68.67  Aligned_cols=188  Identities=18%  Similarity=0.164  Sum_probs=116.9

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc-cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHH
Q 010276          146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG-ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC  224 (514)
Q Consensus       146 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (514)
                      .+..-..+..+...-++.-+++++++|+...++..|++-. ....+....++++.+.                    |..
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA--------------------gE~  232 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA--------------------GEA  232 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH--------------------HHH
Confidence            3444456778889999999999999999999999886532 2222333333222221                    111


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChh
Q 010276          225 CIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       225 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  300 (514)
                      .+......+...-+-......+.+  ..+...+|.|..+.|+.++|++.++..++..|.  +..++..+..++...+.+.
T Consensus       233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya  312 (539)
T PF04184_consen  233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA  312 (539)
T ss_pred             hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence            111111111111111111111111  345677899999999999999999999987775  4568889999999999999


Q ss_pred             HHHHHHHHHhhc-CCCChHHHHHHHHHHhh--cC---------------hhHHHHHHHHHHHhcccCchhH
Q 010276          301 KLSKLVHDLLSI-DPSRPEVFVALSVLWER--KD---------------ERGALSYAEKSIRIDERHIPGY  353 (514)
Q Consensus       301 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~---------------~~~A~~~~~~~~~~~~~~~~~~  353 (514)
                      ++..++.+--+. -|++....+..+.+-.+  ++               -..|++.+.++++.+|..+..+
T Consensus       313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            999888886443 35566666555554333  22               1245677778888888766543

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.29  E-value=2e-06  Score=51.27  Aligned_cols=43  Identities=28%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276          141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE  183 (514)
Q Consensus       141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  183 (514)
                      |.+++.+|..|...|++++|++.|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999988864

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.25  E-value=0.0001  Score=58.19  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      .-+.+.++..+...|++++|+..++.++..-. +..                           -..-+..++|++.+..|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---------------------------lk~l~~lRLArvq~q~~  140 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---------------------------LKALAALRLARVQLQQK  140 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---------------------------HHHHHHHHHHHHHHHhh
Confidence            34567789999999999999999999986522 110                           12346679999999999


Q ss_pred             CHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH
Q 010276          123 ETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE  176 (514)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  176 (514)
                      .+++|+..++.+......+......|.++...|+.++|+..|++++..+++...
T Consensus       141 k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         141 KADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            999999999998776667777889999999999999999999999999865433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.23  E-value=0.0035  Score=56.35  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=84.3

Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccH---hHHHhccCCcCCCC
Q 010276          129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNRSGRA  205 (514)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~  205 (514)
                      .+-+++...|.+...|+.+.+.+..+|.+++-.+.|++...-.|--+.+|.....-....+++   ...+.++...    
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k----  105 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK----  105 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh----
Confidence            445567788999999999999999999999999999999999998888886553322222222   2233333221    


Q ss_pred             CCCcCCchhHHhHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---------hCChH
Q 010276          206 PFDHLDSSRWLHRYVEAQCCIASND----------YKGGLELFAELLQRFPNNIHILLEMAKVDAI---------IGKND  266 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---------~~~~~  266 (514)
                         ....+.|..+.    .|.+.-+          .-+|.+..-...-.+|.....|...+..+..         +.+.+
T Consensus       106 ---~l~ldLW~lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid  178 (660)
T COG5107         106 ---SLNLDLWMLYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID  178 (660)
T ss_pred             ---hccHhHHHHHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence               11233343332    2222211          1222222222223567776777777665442         33455


Q ss_pred             HHHHHHHHHHhhCCCC
Q 010276          267 EAILNFEKVRSIDPYI  282 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~  282 (514)
                      .-...|.+++...-.+
T Consensus       179 ~iR~~Y~ral~tP~~n  194 (660)
T COG5107         179 KIRNGYMRALQTPMGN  194 (660)
T ss_pred             HHHHHHHHHHcCcccc
Confidence            6667788888754444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.22  E-value=0.00013  Score=67.11  Aligned_cols=109  Identities=14%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH--HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE--AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      +...+..-+..+..+|+..+|..++..++-..|....  +...++.+....|-..++---+.......+..      ...
T Consensus       212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~------t~n  285 (886)
T KOG4507|consen  212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF------TSN  285 (886)
T ss_pred             hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc------ccc
Confidence            3333334444455689999999999999987775433  33344444433333222211111111111110      011


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE  254 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  254 (514)
                      .+..+.++...+++......|..+.+..|......-.
T Consensus       286 ~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q  322 (886)
T KOG4507|consen  286 YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQ  322 (886)
T ss_pred             ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence            3455777777777777777777777777765444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.21  E-value=3.7e-06  Score=50.04  Aligned_cols=41  Identities=22%  Similarity=0.211  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      .++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555555555555555555555555555555555555554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.20  E-value=1.6e-06  Score=47.86  Aligned_cols=32  Identities=31%  Similarity=0.451  Sum_probs=22.6

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276          441 YESALRLEPGYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       441 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      |+++++++|+++.+|+++|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56677777777777777777777777777664

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.19  E-value=0.0019  Score=58.03  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---hCChhHHHHHHHH-HhhcCCCChHHH
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYIMTYMDEYAMLLKV---KCDYSKLSKLVHD-LLSIDPSRPEVF  320 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~  320 (514)
                      +++...+-.+|....+|+.-++..+..-..    -++.+.+...+|.++.+   .|+.++|+.++.. +....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            566677777899999999999998887766    45567778888988888   8999999999988 556677889999


Q ss_pred             HHHHHHHhh----------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276          321 VALSVLWER----------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR  365 (514)
Q Consensus       321 ~~l~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      ..+|.+|..          ...++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence            999988865          1234666666666666643 2223344444444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=8.4e-06  Score=65.97  Aligned_cols=94  Identities=11%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      -..|..++....|+.|+..|.+++..+|..+..+.+.+.++++..+++.+.....++++++|+.....+.+|........
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34477888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhc
Q 010276          299 YSKLSKLVHDLLSI  312 (514)
Q Consensus       299 ~~~A~~~~~~~~~~  312 (514)
                      +++|+..+.++..+
T Consensus        94 ~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSL  107 (284)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999999654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.00051  Score=58.26  Aligned_cols=147  Identities=22%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET  124 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  124 (514)
                      .-+..+......|++.+|...|..++...|                               ...++...++.|+...|+.
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-------------------------------~~~~~~~~la~~~l~~g~~  184 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAP-------------------------------ENSEAKLLLAECLLAAGDV  184 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCc-------------------------------ccchHHHHHHHHHHHcCCh
Confidence            445667788899999999999999999977                               4467788899999999999


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276          125 KAAIVEMEGIPSKARNLQMSLLMA--KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS  202 (514)
Q Consensus       125 ~~A~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  202 (514)
                      +.|..++..++....+....-..+  ..+.+.....+. ..+++.+..+|++..+...+                     
T Consensus       185 e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~l---------------------  242 (304)
T COG3118         185 EAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALAL---------------------  242 (304)
T ss_pred             HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHH---------------------
Confidence            999999999876644333333222  233333322222 23444555666666665554                     


Q ss_pred             CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhC
Q 010276          203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIG  263 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~  263 (514)
                                         |..+...|+.+.|.+.+-.+++.+..  +..+...+-.++...|
T Consensus       243 -------------------A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         243 -------------------ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             -------------------HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                               55666666666666666666654332  2334444444444444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.11  E-value=0.0086  Score=56.16  Aligned_cols=80  Identities=13%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             CChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHH-HHHHHhcCChhhHHHHHHHHHhcCCC---CHHHHH
Q 010276          105 INENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLM-AKLYRNSRHNRGAVACYKECLRHCPF---FIEAIT  179 (514)
Q Consensus       105 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~  179 (514)
                      |.-...+-..|..-.+.|..+.+..++++ +..-|.+.+.|... +.+-...|+...-...|+++......   +...|.
T Consensus        76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWd  155 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWD  155 (577)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHH
Confidence            33344555778888899999999999999 55558888887544 44444677888888888888876543   334444


Q ss_pred             HHHHh
Q 010276          180 ALAEL  184 (514)
Q Consensus       180 ~l~~~  184 (514)
                      .....
T Consensus       156 kyie~  160 (577)
T KOG1258|consen  156 KYIEF  160 (577)
T ss_pred             HHHHH
Confidence            44333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.11  E-value=0.0034  Score=59.75  Aligned_cols=172  Identities=16%  Similarity=0.057  Sum_probs=119.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHH-HHH----HHHh------hcChhHHHHHH
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFV-ALS----VLWE------RKDERGALSYA  339 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~l~----~~~~------~~~~~~A~~~~  339 (514)
                      |.-++.+-|.   ....+..+.--.|+-+.+++.+.++.+...-. +-+-. .++    ....      ..+.+.|.+.+
T Consensus       180 f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL  256 (468)
T PF10300_consen  180 FNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL  256 (468)
T ss_pred             HHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence            4444444442   22333444445688899999998887632211 21111 111    1111      13456899999


Q ss_pred             HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276          340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP  414 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  414 (514)
                      .......|+.+-..+..|.++...|+.++|++.|++++....+.     -.++.++.++.-+.+|++|..++.+..+.+.
T Consensus       257 ~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  257 EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            99999999998889999999999999999999999887543332     3578899999999999999999999998665


Q ss_pred             CCHH-HHHHHHHHHHhcCCCh-------HHHHHHHHHHHhh
Q 010276          415 QSAK-ALKLVGDVHASNASGR-------EKAKKFYESALRL  447 (514)
Q Consensus       415 ~~~~-~~~~l~~~~~~~~~~~-------~~A~~~~~~a~~~  447 (514)
                      -+.. ..+..|.++... ++.       ++|...|.++-..
T Consensus       337 WSka~Y~Y~~a~c~~~l-~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLML-GREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             cHHHHHHHHHHHHHHhh-ccchhhhhhHHHHHHHHHHHHHH
Confidence            5433 345667777776 888       8888888877554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=6e-06  Score=46.04  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI   75 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   75 (514)
                      +.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=8.7e-06  Score=45.43  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIV   76 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   76 (514)
                      ++.++.+|.+++..|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4688999999999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.06  E-value=0.011  Score=57.69  Aligned_cols=247  Identities=14%  Similarity=0.066  Sum_probs=170.9

Q ss_pred             hcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          228 SNDYKGGLELFAELLQR-----FPNNIHILLEMAKVDAIIG-----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       228 ~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      ..|.+.|+.+++.+...     .-..+.+.+.+|.+|....     +...|..++.++.+..  ++.+.+.+|.++....
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence            36788888888887661     1124567788999998853     6788999999988764  5667888888887766


Q ss_pred             ---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc-CChHH
Q 010276          298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEA  368 (514)
Q Consensus       298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  368 (514)
                         +...|.++|..+..  ..+..+.+.++.++..     .+...|..++.++.+.+  .+.+...++..+..- +++..
T Consensus       340 ~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~  415 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT  415 (552)
T ss_pred             ccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence               56789999988876  4678889999999888     46779999999998887  355555555554332 77777


Q ss_pred             HHHHHHHhHhhcCCh----HHHHHH-HHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCChHH
Q 010276          369 AVIAFRGAQELRPDL----RSYQGL-VHSYLQF----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREK  436 (514)
Q Consensus       369 A~~~~~~~~~~~~~~----~~~~~l-~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~  436 (514)
                      +...+....+..-+.    .++... .......    .+...+...+.++..  +.++.+...+|.+|..-   ..+++.
T Consensus       416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~  493 (552)
T KOG1550|consen  416 ALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEK  493 (552)
T ss_pred             HHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHH
Confidence            777666655543222    111111 1111111    245556666666543  45678888888888753   246789


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHc---CChhHHHHHHHHHHhhCCCc
Q 010276          437 AKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~  485 (514)
                      |...|.++....   ....+++|.++..-   .....|..++.++.+.....
T Consensus       494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence            999999888776   78889999888642   12678888888887766544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.0037  Score=51.97  Aligned_cols=167  Identities=13%  Similarity=0.133  Sum_probs=106.2

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHHH
Q 010276          263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYA  339 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~  339 (514)
                      .....|+..-..++.++|.+..+|...-.++..++ +..+-++.+.++++.+|.+-.+|...-.+... |++. .-+++.
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~  136 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT  136 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence            44567777777777777777777666655555443 45566677777777777777777766655555 6665 666777


Q ss_pred             HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cC-----CHHHHHHHHHHHHhh
Q 010276          340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FS-----KVKEALYAAREAMKA  412 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~~~  412 (514)
                      ..++..+.++-.+|..+-.+....+.++.-+.+..+.++.+--+ .+|...-.+... .|     ..+.-+.+..+.+..
T Consensus       137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~  216 (318)
T KOG0530|consen  137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL  216 (318)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777665444 455443222222 11     223344555666667


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 010276          413 MPQSAKALKLVGDVHAS  429 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~  429 (514)
                      .|++..+|..+..++..
T Consensus       217 vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  217 VPNNESAWNYLKGLLEL  233 (318)
T ss_pred             CCCCccHHHHHHHHHHh
Confidence            77777777777666664

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=0.026  Score=61.55  Aligned_cols=386  Identities=13%  Similarity=0.034  Sum_probs=210.3

Q ss_pred             HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHH-HHHHHHHHhcCCHHH
Q 010276           48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK-YKIASCHFALGETKA  126 (514)
Q Consensus        48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~  126 (514)
                      .+|.+-++.|.|.+|+.++++- ...+...                            +-.+.. +.+-.+|...++++.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~----------------------------~~~e~l~fllq~lY~~i~dpDg 1438 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEK----------------------------ETEEALYFLLQNLYGSIHDPDG 1438 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchh----------------------------HHHHHHHHHHHHHHHhcCCcch
Confidence            6888999999999999999985 1111100                            112233 334448888999887


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276          127 AIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP  206 (514)
Q Consensus       127 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  206 (514)
                      -..........|    .....-......|++..|..+|+++++.+|+......+........+.....+..........+
T Consensus      1439 V~Gv~~~r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s 1514 (2382)
T KOG0890|consen 1439 VEGVSARRFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS 1514 (2382)
T ss_pred             hhhHHHHhhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccC
Confidence            666554211111    1233344566789999999999999999999877776655554455554444443332221111


Q ss_pred             CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHH-----HHHHHHHHHhhCCC
Q 010276          207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE-----AILNFEKVRSIDPY  281 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~-----A~~~~~~~~~~~~~  281 (514)
                         ...+.|...-.  .+..+.++++.-.....   ..+.++..+.. +|.+.....+-+.     .++..+... ..|-
T Consensus      1515 ---e~~~~~~s~~~--eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~l 1584 (2382)
T KOG0890|consen 1515 ---EEVDELNSLGV--EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENL 1584 (2382)
T ss_pred             ---HHHHHHHHHHH--HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhH
Confidence               11222322222  23367777777666554   22222222221 5555555443222     111111111 1110


Q ss_pred             --------CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-----hHHHHHHHHHH-hhcChhHHHHHHHHHHH---
Q 010276          282 --------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLW-ERKDERGALSYAEKSIR---  344 (514)
Q Consensus       282 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~-~~~~~~~A~~~~~~~~~---  344 (514)
                              ....+..+..++. .-+.+...   +......+++     .+-|.+....- ...+..+-+-.+++++-   
T Consensus      1585 sa~s~~~Sy~~~Y~~~~kLH~-l~el~~~~---~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~ 1660 (2382)
T KOG0890|consen 1585 SACSIEGSYVRSYEILMKLHL-LLELENSI---EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLR 1660 (2382)
T ss_pred             HHhhccchHHHHHHHHHHHHH-HHHHHHHH---HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHh
Confidence                    0111111111111 01111111   1111112221     12222222111 11333444444554432   


Q ss_pred             hc----ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC----
Q 010276          345 ID----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQ----  415 (514)
Q Consensus       345 ~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~----  415 (514)
                      .+    ....+.|...|.+....|+++.|-..+-.+.+.. ...++...|..+...|+-..|+..+++.++.+ |+    
T Consensus      1661 ~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1661 MRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence            12    2345678999999999999999999888887766 34678889999999999999999999999654 32    


Q ss_pred             ------C------HHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhCCCChHHHHHHHHHHH------------HcCChh
Q 010276          416 ------S------AKALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAELHV------------IEGRNG  469 (514)
Q Consensus       416 ------~------~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~la~~~~------------~~g~~~  469 (514)
                            .      ..+...++...... +++  +.-++.|..+.+..|.....++.+|..|.            +.|++.
T Consensus      1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es-~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~ 1818 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEES-GNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVL 1818 (2382)
T ss_pred             ccccchhhhhhhhhhHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHH
Confidence                  1      12233444444444 554  56678899999999977777777775442            334554


Q ss_pred             H---HHHHHHHHHhhC
Q 010276          470 D---AVSLLERYLKDW  482 (514)
Q Consensus       470 ~---A~~~~~~~~~~~  482 (514)
                      .   ++-.|.+++...
T Consensus      1819 ~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1819 SLLKAIYFFGRALYYG 1834 (2382)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            4   455555665544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.05  E-value=0.016  Score=57.00  Aligned_cols=193  Identities=15%  Similarity=0.075  Sum_probs=132.7

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      +...+.+..-+..+...|...+|+..--.|-+  |   .                           .-.+..-+.+.-++
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d--~---~---------------------------~aa~lle~~~~~L~  391 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD--P---E---------------------------MAADLLEQLEWQLF  391 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC--H---H---------------------------HHHHHHHhhhhhhh
Confidence            34456777777888888999988876544321  1   0                           01223334456667


Q ss_pred             hcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--HHHHHHHHHhccCcccHhHHH
Q 010276          120 ALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF--IEAITALAELGATPKDIISLF  195 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~~~  195 (514)
                      ..++..--+...+.++..  -.+|......+.......++.+|.....++...-|..  ...-..++             
T Consensus       392 ~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a-------------  458 (894)
T COG2909         392 NGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA-------------  458 (894)
T ss_pred             cccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH-------------
Confidence            777777777777777654  5678888888999999999999999998887654431  11111111             


Q ss_pred             hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCChHHHHH
Q 010276          196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAIL  270 (514)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~  270 (514)
                                          ...-..|.+....|+.+.|.+..+.++..-|.+     ..+....|.+..-.|++++|..
T Consensus       459 --------------------e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~  518 (894)
T COG2909         459 --------------------EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALA  518 (894)
T ss_pred             --------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHH
Confidence                                112345888889999999999999999887765     4567778899999999999999


Q ss_pred             HHHHHHhhC----CCC--HHHHHHHHHHHHHhC
Q 010276          271 NFEKVRSID----PYI--MTYMDEYAMLLKVKC  297 (514)
Q Consensus       271 ~~~~~~~~~----~~~--~~~~~~l~~~~~~~~  297 (514)
                      +...+.+..    ...  ..+....+.++..+|
T Consensus       519 ~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         519 LMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            988887762    222  233344566777777

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.02  E-value=0.00035  Score=64.49  Aligned_cols=89  Identities=24%  Similarity=0.234  Sum_probs=76.8

Q ss_pred             HHHhcCCChHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHH
Q 010276          426 VHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQE  503 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~  503 (514)
                      +|.+..|+...|+.++..|+...|.... ...+||.++.+.|-..+|-..+.+++.+..+.+ .++.+|..+..+.+.+.
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            3444348999999999999999887544 677899999999999999999999999885544 88899999999999999


Q ss_pred             HHHHHHHHhcC
Q 010276          504 ALSHYEAALRL  514 (514)
Q Consensus       504 A~~~~~~al~l  514 (514)
                      |++.|+.|+++
T Consensus       695 a~~~~~~a~~~  705 (886)
T KOG4507|consen  695 ALEAFRQALKL  705 (886)
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.00  E-value=0.0012  Score=59.28  Aligned_cols=167  Identities=17%  Similarity=0.113  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhc----CCCChHHHHHHHHHHhh----cChhHHHHHHHH-HHHhcccCchhH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWER----KDERGALSYAEK-SIRIDERHIPGY  353 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~-~~~~~~~~~~~~  353 (514)
                      ++....+-..|....+|+.-+++.+.+-..    .++.+.+....|.++.+    |+.++|+..+.. .....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            456667777899999999999999887766    45566777777776665    899999999999 445566778889


Q ss_pred             HHHHHHHHhc---------CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-h-------h----
Q 010276          354 IMKGNLLLSM---------KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM-K-------A----  412 (514)
Q Consensus       354 ~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~----  412 (514)
                      ...|.+|...         ...++|+..|.++.+.+|+...-.+++.++...|...+....+++.. .       .    
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            8899887432         24678888888888888776555666666666665333332222221 0       0    


Q ss_pred             CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      .-.+-.....++.+..-. |++++|+..++++++..|.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~-~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLA-GDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCc
Confidence            011222333344444444 6666666666666655443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00038  Score=56.92  Aligned_cols=104  Identities=14%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCCCcH----------HHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQ--------RFPNNI----------HILLEMAKVDAIIGKNDEAILNFEKVRSI  278 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~  278 (514)
                      .+...|+-++..|+|.+|...|+.++.        ..|..+          ..+.+.++|+...|++-++++....++..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            345668899999999999999998864        345543          46678889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276          279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF  320 (514)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  320 (514)
                      +|.+..+++..|......-+..+|..-+.++++.+|.-..+.
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            999999999999999998899999999999999888765443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.00027  Score=57.76  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=79.3

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhh--------cCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--------RPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      ..++...|+-++..|+|.+|...|+.++..        .|..           +.+.+.+.|+...|++-++++....++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            445667788888899999998888887643        2332           235677788888888888888888888


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      ...|.+..+++..|...... -+..+|...|.++++++|.-..+
T Consensus       258 ~~~~~nvKA~frRakAhaa~-Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAV-WNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcChhhHHH
Confidence            88888888888888888776 77788888888888888765443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0057  Score=50.89  Aligned_cols=202  Identities=11%  Similarity=0.070  Sum_probs=150.7

Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh-HHH
Q 010276          226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS-KLS  303 (514)
Q Consensus       226 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~  303 (514)
                      .+...-+.|+.+.+.++..+|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|.-.-.+....|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34567789999999999999999888887777776654 6778899999999999999999999999999999888 788


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cC-----ChHHHHHHHHHh
Q 010276          304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MK-----RPEAAVIAFRGA  376 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~A~~~~~~~  376 (514)
                      +..+.++..+..+-.+|...-.+... +.++.-+.+....++.+-.+-.+|..+-.+... .|     ..+.-+.+..+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~  213 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK  213 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence            89999999999999999888877777 889999999999999888777777554333222 22     233445677778


Q ss_pred             HhhcCCh-HHHHHHHHHHHh-cC--CHHHHHHHHHHHH-hhCCCCHHHHHHHHHHH
Q 010276          377 QELRPDL-RSYQGLVHSYLQ-FS--KVKEALYAAREAM-KAMPQSAKALKLVGDVH  427 (514)
Q Consensus       377 ~~~~~~~-~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~  427 (514)
                      +...|++ .+|..|.-++.. .|  .+.+-........ .....+|..+..+..+|
T Consensus       214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence            8899999 789888777764 44  2333333333333 22233455555555554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.94  E-value=0.026  Score=57.68  Aligned_cols=106  Identities=11%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh----
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA----  120 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----  120 (514)
                      ..+...++++..+.|++|+..|++.....|+-...                            .++.++.|...+.    
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~  528 (932)
T PRK13184        477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG----------------------------YEAQFRLGITLLEKASE  528 (932)
T ss_pred             ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc----------------------------hHHHHHhhHHHHHHHHh
Confidence            34556788899999999999999999998866533                            3444555444432    


Q ss_pred             c---CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276          121 L---GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI  178 (514)
Q Consensus       121 ~---g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  178 (514)
                      .   ..+++|+..|+.+-..+..|--|...|.+|.+.|++++-+++|.-+++..|..+..-
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        529 QGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             cCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            2   258999999999988888898999999999999999999999999999998876654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.92  E-value=0.018  Score=53.28  Aligned_cols=182  Identities=17%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEYAML  292 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~  292 (514)
                      +.+..+.|+++.-    ...+...+ +.++..+..+......++++++....+++...-        +......+..-..
T Consensus         5 ~eaaWrl~~Wd~l----~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    5 AEAAWRLGDWDLL----EEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHhcCChhhH----HHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            6677788888883    33333222 234566666777778899998888888776531        1111112222222


Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh------cChh--HHHHHHHHHHHh----cccCchhHHHHHHHH
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER------KDER--GALSYAEKSIRI----DERHIPGYIMKGNLL  360 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~--~A~~~~~~~~~~----~~~~~~~~~~~~~~~  360 (514)
                      +....+.+++..+.......    +.....+-.....      .+++  +-+-.++..+-.    .......|...+.+.
T Consensus        81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a  156 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA  156 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            22333334444333211110    1111111111111      1221  112222222222    334466788888899


Q ss_pred             HhcCChHHHHHHHHHhHhhcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          361 LSMKRPEAAVIAFRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       361 ~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      .+.|+++.|...+.++....+.     .......+......|+..+|+..++..+.
T Consensus       157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999988888776532     24566778888889999999988888777

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.91  E-value=0.014  Score=51.58  Aligned_cols=162  Identities=10%  Similarity=0.007  Sum_probs=108.6

Q ss_pred             HHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc
Q 010276          151 YRNSRHNRGAVACYKECLRHC-PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN  229 (514)
Q Consensus       151 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (514)
                      ...+|+.+.|..++.++-... ..++.....++.++                                 |..|......+
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~---------------------------------yn~G~~l~~~~   49 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC---------------------------------YNIGKSLLSKK   49 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH---------------------------------HHHHHHHHHcC
Confidence            357899999999999987655 44455555554443                                 56688888889


Q ss_pred             -CHHHHHHHHHHHHHhC----C---Cc-------HHHHHHHHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          230 -DYKGGLELFAELLQRF----P---NN-------IHILLEMAKVDAIIGKND---EAILNFEKVRSIDPYIMTYMDEYAM  291 (514)
Q Consensus       230 -~~~~A~~~~~~~~~~~----p---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~  291 (514)
                       +++.|..+++++.+.-    +   ..       ..++..++.++...+.++   +|....+.+-...|+.+..+...-.
T Consensus        50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~  129 (278)
T PF08631_consen   50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE  129 (278)
T ss_pred             CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence             9999999999988752    1   11       346677888888877755   4555566666667887777766666


Q ss_pred             HHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH---HhhcChhHHHHHHHHHHHh
Q 010276          292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL---WERKDERGALSYAEKSIRI  345 (514)
Q Consensus       292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~A~~~~~~~~~~  345 (514)
                      ++...++.+++.+.+.+++...+-....+......   +.......+...+...+..
T Consensus       130 il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~  186 (278)
T PF08631_consen  130 ILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN  186 (278)
T ss_pred             HHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence            77778889999999998887654222222222222   2224555676777666543

It is also involved in sporulation [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.91  E-value=2.3e-05  Score=70.62  Aligned_cols=107  Identities=12%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      .+...+..+.|+.|+..|.++++.+|+++..+...+..+.+.+++..|+.-+.++++.+|....+++..|......+++.
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            37777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      +|...|+......|+++.+...+..+-
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            999999999999999998877766543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.91  E-value=0.016  Score=52.32  Aligned_cols=372  Identities=15%  Similarity=0.087  Sum_probs=179.8

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE  123 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  123 (514)
                      -..+..|-..+++|+|.+|++.+..--..-.+....+.... ++               ...++...-...|.|+...|+
T Consensus        80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-i~---------------~l~~df~l~~i~a~sLIe~g~  143 (549)
T PF07079_consen   80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-IQ---------------QLFSDFFLDEIEAHSLIETGR  143 (549)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-HH---------------HHhhHHHHHHHHHHHHHhcCC
Confidence            35566788889999999999988776544222111111110 00               011333344567899999999


Q ss_pred             HHHHHHHHhcCCCC------CccHHHH----HHHHHHHHhc----CChhhHHHHHHHHH---------hc------CCCC
Q 010276          124 TKAAIVEMEGIPSK------ARNLQMS----LLMAKLYRNS----RHNRGAVACYKECL---------RH------CPFF  174 (514)
Q Consensus       124 ~~~A~~~~~~~~~~------~~~~~~~----~~l~~~~~~~----g~~~~A~~~~~~~l---------~~------~p~~  174 (514)
                      +.++..+++++...      ..+.+.+    .++|+.|.-.    ...+-+..+|+.++         +.      .|..
T Consensus       144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee  223 (549)
T PF07079_consen  144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE  223 (549)
T ss_pred             cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence            99999999885221      2455554    3566666531    12233333333322         11      1221


Q ss_pred             HHHHHHHHHhccCcccH----hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C--
Q 010276          175 IEAITALAELGATPKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--P--  246 (514)
Q Consensus       175 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p--  246 (514)
                      .-.-..+-.+..-..+.    ..+++...+..       .+|..-  ....+..-.-..+.+++..+++.+....  +  
T Consensus       224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-------v~p~~~--LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lk  294 (549)
T PF07079_consen  224 ELFSTIMQHLFIVPKERLPPLMQILENWENFY-------VHPNYD--LVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLK  294 (549)
T ss_pred             HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-------cCCchh--HHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHH
Confidence            11111111111111111    11111111110       011100  0111111111224444444444433221  0  


Q ss_pred             -CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH------HHHHHHH-HhCChhHH---HHHHHHHhhcCCC
Q 010276          247 -NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD------EYAMLLK-VKCDYSKL---SKLVHDLLSIDPS  315 (514)
Q Consensus       247 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~-~~~~~~~A---~~~~~~~~~~~~~  315 (514)
                       .-......+-....+.++...|..++.-...++|+.....-      .+-.+.. ....+..-   +..++..-..+-+
T Consensus       295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD  374 (549)
T PF07079_consen  295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID  374 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence             11222333334445678888888888888788887642111      1111111 11112222   2223333223333


Q ss_pred             ChHHHHH---HHH-HHhhcC-hhHHHHHHHHHHHhcccCchhHHHH----HHHHH---hcCChHHHHHHHHHhH---hhc
Q 010276          316 RPEVFVA---LSV-LWERKD-ERGALSYAEKSIRIDERHIPGYIMK----GNLLL---SMKRPEAAVIAFRGAQ---ELR  380 (514)
Q Consensus       316 ~~~~~~~---l~~-~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~A~~~~~~~~---~~~  380 (514)
                      .......   -+. +...|. -++|+..++.+++..|.+.......    -..|.   ....+..-+. ++..+   .+.
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk-Le~fi~e~gl~  453 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLK-LEDFITEVGLT  453 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCC
Confidence            3222222   222 233344 6788898888888877765432111    11111   0111111111 11111   222


Q ss_pred             CCh----HHHHHH--HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276          381 PDL----RSYQGL--VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       381 ~~~----~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      |-.    +.-+.+  |..++.+|++.++.-+-.-..++.| ++.++..+|.++... .+|++|..++..
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-k~Y~eA~~~l~~  520 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-KRYQEAWEYLQK  520 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-hhHHHHHHHHHh
Confidence            221    222333  5667789999999988888888999 799999999999998 999999998875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.90  E-value=0.032  Score=55.60  Aligned_cols=308  Identities=14%  Similarity=0.064  Sum_probs=181.7

Q ss_pred             HHHHHHHhcCCCC---C--ccHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCC--CHHHHHHHHHhccCcccHhHHHh
Q 010276          125 KAAIVEMEGIPSK---A--RNLQMSLLMAKLYR-NSRHNRGAVACYKECLRHCPF--FIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       125 ~~A~~~~~~~~~~---~--~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      ..|+..++.+...   +  ....+.+.+|.++. ...+++.|...+++++.+...  ..+....                
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~----------------  101 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR----------------  101 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH----------------
Confidence            3455666654322   2  24566788899888 688999999999999876643  2222221                


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHhCChHHHHH
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN---N-IHILLEM--AKVDAIIGKNDEAIL  270 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~-~~~~~~l--a~~~~~~~~~~~A~~  270 (514)
                                          ..+.++.++.+.+... |...+++.++....   . ....+.+  .......+++..|++
T Consensus       102 --------------------~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~  160 (608)
T PF10345_consen  102 --------------------CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE  160 (608)
T ss_pred             --------------------HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH
Confidence                                2234577777777766 88888888765433   2 2222222  233333478888998


Q ss_pred             HHHHHHhhC--CCCHH----HHHHHHHHHHHhCChhHHHHHHHHHhhcC------CC----ChHHHHHHHHHHhh---cC
Q 010276          271 NFEKVRSID--PYIMT----YMDEYAMLLKVKCDYSKLSKLVHDLLSID------PS----RPEVFVALSVLWER---KD  331 (514)
Q Consensus       271 ~~~~~~~~~--~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~----~~~~~~~l~~~~~~---~~  331 (514)
                      .++.+....  +.++.    +....+.+....+..+++++.++++....      |.    ...++..+-.+...   |+
T Consensus       161 ~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~  240 (608)
T PF10345_consen  161 NLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGD  240 (608)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence            888887764  23432    22333556666677777777777663321      11    12333333332222   66


Q ss_pred             hhHHHHHH---HHHHHhcccC--------------------------ch-------------hHHHHHHHHHhcCChHHH
Q 010276          332 ERGALSYA---EKSIRIDERH--------------------------IP-------------GYIMKGNLLLSMKRPEAA  369 (514)
Q Consensus       332 ~~~A~~~~---~~~~~~~~~~--------------------------~~-------------~~~~~~~~~~~~~~~~~A  369 (514)
                      ++.+...+   +..+....+.                          +.             .+..-|......+..+.|
T Consensus       241 ~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks  320 (608)
T PF10345_consen  241 VKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKS  320 (608)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHH
Confidence            55444433   3333221110                          00             123344555666777688


Q ss_pred             HHHHHHhHhhc-------CCh-----------H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC----
Q 010276          370 VIAFRGAQELR-------PDL-----------R---------SYQGLVHSYLQFSKVKEALYAAREAMKAM---PQ----  415 (514)
Q Consensus       370 ~~~~~~~~~~~-------~~~-----------~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~----  415 (514)
                      .++++++++.-       |..           .         .....+.+.+-.+++..|....+.+....   |.    
T Consensus       321 ~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  400 (608)
T PF10345_consen  321 EKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYE  400 (608)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhh
Confidence            88887776531       110           0         13456777778899999999888777643   22    


Q ss_pred             --CHHHHHHHHHHHHhcCCChHHHHHHHH--------HHHhhCCCCh---HHHHHHHHHHHHcCChhH
Q 010276          416 --SAKALKLVGDVHASNASGREKAKKFYE--------SALRLEPGYL---GAALALAELHVIEGRNGD  470 (514)
Q Consensus       416 --~~~~~~~l~~~~~~~~~~~~~A~~~~~--------~a~~~~~~~~---~~~~~la~~~~~~g~~~~  470 (514)
                        .+..++..|..+... |+.+.|...|.        .+....+.+.   -+..++..++...+....
T Consensus       401 ~~~~~~~yL~gl~~q~~-g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  401 SLYPLLHYLLGLYYQST-GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             hhhHHHHHHHHHHHHHc-CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence              367788889888888 99999999998        3334444332   255667777776665444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.90  E-value=1.4e-05  Score=44.12  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=24.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276          406 AREAMKAMPQSAKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      |+++++.+|+++.+|+++|.+|... |++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~-g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQ-GDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHC-cCHHhhc
Confidence            5677777777777777777777776 7777765

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.89  E-value=0.015  Score=53.94  Aligned_cols=145  Identities=15%  Similarity=0.120  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC----ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc---h
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI---P  351 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~---~  351 (514)
                      ......+...+.+..+.|.++.|...+.++....+.    .+.+.+..+.+... |+..+|+..++..+.......   .
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            344567778888888888888888888877765422    34555555555544 777788877777766221111   0


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhh-cCC--hHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPD--LRSYQGLVHSYLQF------SKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      ....+......  ..+...   ...... .+.  ..++..+|......      +..+++...|+++.+..|+....|+.
T Consensus       223 ~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  223 SNAELKSGLLE--SLEVIS---STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             cHHHHhhcccc--cccccc---ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence            00001000000  000000   000000 000  02345555555555      66777777777777777777777777


Q ss_pred             HHHHHHh
Q 010276          423 VGDVHAS  429 (514)
Q Consensus       423 l~~~~~~  429 (514)
                      .|..+..
T Consensus       298 ~a~~~~~  304 (352)
T PF02259_consen  298 WALFNDK  304 (352)
T ss_pred             HHHHHHH
Confidence            7666554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.0025  Score=54.30  Aligned_cols=147  Identities=14%  Similarity=0.030  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHH--HH
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS--VL  326 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~  326 (514)
                      .+.-+..+.-....|++.+|...|..++...|.+.++...++.++...|+.+.|..++...=....... .....+  .+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH
Confidence            344555666777788888888888888888888888888888888888888888777655322221111 111111  12


Q ss_pred             Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcC
Q 010276          327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFS  397 (514)
Q Consensus       327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~  397 (514)
                      +.+ ....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+...   .+...+..++...|
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            222 222221 23455566788888888889999999999999988888877765442   44555555554444

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.80  E-value=4.2e-05  Score=68.99  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~  408 (514)
                      +.++.|+..|.++++++|+++..+-+++..+.+.+++..|+..+.++++.+|.. .+|+..|.+....+++.+|+..|+.
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~   97 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK   97 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence            777788888888888888877777777778888888888888888888888776 7777778888888888888888888


Q ss_pred             HHhhCCCCHHHHHHHHHHHH
Q 010276          409 AMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       409 ~~~~~p~~~~~~~~l~~~~~  428 (514)
                      .....|+++.+...+-.|-.
T Consensus        98 ~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   98 VKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             hhhcCcCcHHHHHHHHHHHH
Confidence            88888887777666655533

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.064  Score=58.78  Aligned_cols=313  Identities=15%  Similarity=0.128  Sum_probs=184.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCC--C-c-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          113 KIASCHFALGETKAAIVEMEGIPSK--A-R-NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       113 ~la~~~~~~g~~~~A~~~~~~~~~~--~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      .++..-++.|.|..|+-.+++-...  + . ....++.+-.+|...++++.-..+... ...+|.               
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--------------- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--------------- 1451 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---------------
Confidence            6777888888888888888883211  1 1 222334444577777777766655543 112221               


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA  268 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  268 (514)
                                                   ...+.......|++..|..+|+++++.+|+....+...-......|.++..
T Consensus      1452 -----------------------------l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1452 -----------------------------LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred             -----------------------------HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence                                         112233445669999999999999999999888888888888889999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHH-HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---cChh---HHHHHHHH
Q 010276          269 ILNFEKVRSIDPYIMTYMDEYA-MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDER---GALSYAEK  341 (514)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~---~A~~~~~~  341 (514)
                      +...+-.....++...-+..++ .+.++.++++.-.....   ..+.....+.. +|.+...   .+.-   +.++..+.
T Consensus      1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~ 1578 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRE 1578 (2382)
T ss_pred             HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHH
Confidence            9988877776666665555553 45588888888776654   22222222221 5555444   1111   12221111


Q ss_pred             HHHhccc--------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          342 SIRIDER--------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       342 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      .. +.|-        ....|-.+..++.. -+.+..++...+   ..++.      .-|.+....-....+..+-+-.++
T Consensus      1579 ~~-i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~R 1653 (2382)
T KOG0890|consen 1579 LV-IENLSACSIEGSYVRSYEILMKLHLL-LELENSIEELKK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFR 1653 (2382)
T ss_pred             Hh-hhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHH
Confidence            11 1110        00111111111110 111111111111   11211      224443333222333444444555


Q ss_pred             HHHh---hCC----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          408 EAMK---AMP----QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       408 ~~~~---~~p----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      +++-   .+|    .-...|...|.+.... |.++.|..+.-+|.+..  -+.+....|..++..|+-..|+..+++.++
T Consensus      1654 Rs~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1654 RSMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred             HHHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            5432   222    3367889999998887 99999999998888776  468888999999999999999999999986


Q ss_pred             hC
Q 010276          481 DW  482 (514)
Q Consensus       481 ~~  482 (514)
                      .+
T Consensus      1731 ~~ 1732 (2382)
T KOG0890|consen 1731 KN 1732 (2382)
T ss_pred             hh
Confidence            54

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=7.4e-05  Score=41.56  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI  282 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  282 (514)
                      .+++.+|.++...|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456677777777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=6.8e-05  Score=41.68  Aligned_cols=31  Identities=23%  Similarity=0.149  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      +|+.+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.74  E-value=0.032  Score=54.60  Aligned_cols=273  Identities=16%  Similarity=0.070  Sum_probs=188.1

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----CChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhC--
Q 010276          230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAII-----GKNDEAILNFEKVRSI-----DPYIMTYMDEYAMLLKVKC--  297 (514)
Q Consensus       230 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~--  297 (514)
                      ....|..+++.+.+.  .+......+|.++..-     .+.+.|+.+|+.+...     .-..+.+...+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888877554  4677788888888764     5899999999998771     1124557888999998854  


Q ss_pred             ---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcC----hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc----CCh
Q 010276          298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD----ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRP  366 (514)
Q Consensus       298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  366 (514)
                         +.+.|..++.++...  .++...+.+|.++..|.    ...|..+|..+...  .+..+.+.++.+|..-    .+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               667799999988765  56778888999888854    56999999988754  4577888888887643    478


Q ss_pred             HHHHHHHHHhHhhcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhc---CCChHHHH
Q 010276          367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQ-FSKVKEALYAAREAMKAMPQS----AKALKLVGDVHASN---ASGREKAK  438 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~---~~~~~~A~  438 (514)
                      ..|..++.++.+..+ ..+...++..+.. .+.++.+...+.......-..    ...+..........   ..+...+.
T Consensus       381 ~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~  459 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKGN-PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF  459 (552)
T ss_pred             HHHHHHHHHHHHccC-hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence            999999999988872 2333333333322 277777766665554432221    11111122111111   02445666


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHc----CChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh-c--cHHHHHHHHHHH
Q 010276          439 KFYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-N--MLQEALSHYEAA  511 (514)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~a  511 (514)
                      ..+.++..  ..++.+...+|.+|..-    .+++.|...|.++....  ....+++|.++..- |  ....|..+|.++
T Consensus       460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~  535 (552)
T KOG1550|consen  460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQA  535 (552)
T ss_pred             HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence            66666554  45678888999998765    35899999999998877  67889999988752 1  268888888877


Q ss_pred             hc
Q 010276          512 LR  513 (514)
Q Consensus       512 l~  513 (514)
                      .+
T Consensus       536 ~~  537 (552)
T KOG1550|consen  536 SE  537 (552)
T ss_pred             Hh
Confidence            54

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.0018  Score=51.41  Aligned_cols=97  Identities=14%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hHHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALALAEL  461 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~  461 (514)
                      -..++..+...+++++|...++.++....+.   +-+-..++.+.... |.+++|+..+.....  ++. +..-...|.+
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t~~~--~~w~~~~~elrGDi  168 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ-KKADAALKTLDTIKE--ESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence            3455666666666666666666666433222   23345566666666 666666665554221  111 1223445666


Q ss_pred             HHHcCChhHHHHHHHHHHhhCCCc
Q 010276          462 HVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       462 ~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +...|+-++|+..|++++...+++
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCCh
Confidence            666666666666666666665443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.72  E-value=0.0014  Score=51.66  Aligned_cols=109  Identities=24%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCh-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA-SGR-EKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      ..+......++.+.++..+++++.+...+.         +.... ..+ ......++..      ...+...++..+...
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------l~~~~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~   75 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDF---------LPDLDDEEWVEPERERLREL------YLDALERLAEALLEA   75 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SST---------TGGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------CCCCCccHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            335555667788888888888887653220         00000 011 1111111111      123444455555555


Q ss_pred             CChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          466 GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      |++++|+..+++++..+|.++ ++..+..+|...|+..+|+..|++.
T Consensus        76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            566666666666666655554 5555555566666666665555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.71  E-value=3.9e-05  Score=65.87  Aligned_cols=89  Identities=26%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      -.+..|.+++|++.|..++.++|.. ..+...+.++.++++...|+..+..++.++|+...-+-..|.....+ |++++|
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll-g~~e~a  201 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL-GNWEEA  201 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh-hchHHH
Confidence            3344455555555555555555554 34444555555555555555555555555555555555555555544 555555


Q ss_pred             HHHHHHHHhhC
Q 010276          438 KKFYESALRLE  448 (514)
Q Consensus       438 ~~~~~~a~~~~  448 (514)
                      ...+..+.+++
T Consensus       202 a~dl~~a~kld  212 (377)
T KOG1308|consen  202 AHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHhcc
Confidence            55555555543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.71  E-value=0.023  Score=50.97  Aligned_cols=146  Identities=19%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCC--hHHHHHHHHHHHhcC-------C
Q 010276          332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-------K  398 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-------~  398 (514)
                      ..+|..+|..+  ....++.+.+.+|.++..    ..+..+|...|+++.+....  ..+...++..|..-+       +
T Consensus        93 ~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~  170 (292)
T COG0790          93 KTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD  170 (292)
T ss_pred             HHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence            44555555522  222334445555555544    23556666666666554222  223445555554431       2


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---------
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNA---SGREKAKKFYESALRLEPGYLGAALALAELHVIEG---------  466 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---------  466 (514)
                      ...|...|.++....  ++.+.+.+|.+|..-.   .+..+|..+|.++.+...  ..+.+.++ ++...|         
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~  245 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL  245 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence            236777777766654  6778888887776521   367888888888888765  77778888 666655         


Q ss_pred             ------ChhHHHHHHHHHHhhCCC
Q 010276          467 ------RNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       467 ------~~~~A~~~~~~~~~~~~~  484 (514)
                            +...|...+..+....+.
T Consensus       246 ~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         246 TAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCh
Confidence                  666777777776665544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.65  E-value=9.6e-05  Score=41.08  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI   75 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   75 (514)
                      +++|+.+|.++...|++++|+.+|+++++.+|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            357999999999999999999999999999884

...

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00045  Score=59.23  Aligned_cols=114  Identities=23%  Similarity=0.267  Sum_probs=95.8

Q ss_pred             ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276           38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC  117 (514)
Q Consensus        38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~  117 (514)
                      .+...++.+..-|+-|++.++|..|+..|.++|+..-.+++.                           +...+...|-|
T Consensus        76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------------navLY~NRAAa  128 (390)
T KOG0551|consen   76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------------NAVLYTNRAAA  128 (390)
T ss_pred             ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH---------------------------HHHHHhhHHHH
Confidence            567788999999999999999999999999999985444422                           23456678899


Q ss_pred             HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276          118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI  178 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  178 (514)
                      .+..|+|..|+..+... .-.|.+..+++.-+.|++...++++|..+.+..+..+.....+.
T Consensus       129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999999985 44599999999999999999999999999999988776554444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.62  E-value=0.049  Score=49.33  Aligned_cols=210  Identities=17%  Similarity=0.096  Sum_probs=107.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-----
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-----  345 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-----  345 (514)
                      +++++...|-.++.|+.....+...++-+.|+....+.+...|.   ....++.++.. .+-+.-..+|+++.+.     
T Consensus       291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y  367 (660)
T COG5107         291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY  367 (660)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence            45555555666667777776667777777777666666554444   44445555544 2322333333333221     


Q ss_pred             -------------cccC-ch-----------hHHHHHHHHHhcCChHHHHHHHHHhHhhc-CChHHHHHHH-HHHHhcCC
Q 010276          346 -------------DERH-IP-----------GYIMKGNLLLSMKRPEAAVIAFRGAQELR-PDLRSYQGLV-HSYLQFSK  398 (514)
Q Consensus       346 -------------~~~~-~~-----------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~  398 (514)
                                   +|.. ++           +|...-+.-.+..-.+.|...|-++-+.. -.+.++..-+ .-+..+|+
T Consensus       368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d  447 (660)
T COG5107         368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD  447 (660)
T ss_pred             hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence                         0100 00           11111122223333455555555554332 1112222221 22344667


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCChhHHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRNGDAVSLLE  476 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~  476 (514)
                      +.-|..+|+-.+...|+++......-..+... ++-+.|...|++++..-...  ..+|..+......-|+...+...=+
T Consensus       448 ~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i-nde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~  526 (660)
T COG5107         448 RATAYNIFELGLLKFPDSTLYKEKYLLFLIRI-NDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE  526 (660)
T ss_pred             cchHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence            77777777777777777665555555555555 66677777777665432222  3455555555566666666666666


Q ss_pred             HHHhhCCCc
Q 010276          477 RYLKDWADD  485 (514)
Q Consensus       477 ~~~~~~~~~  485 (514)
                      +.....|..
T Consensus       527 rf~e~~pQe  535 (660)
T COG5107         527 RFRELVPQE  535 (660)
T ss_pred             HHHHHcCcH
Confidence            666666653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.60  E-value=0.0024  Score=50.29  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                      ...|......|+...++..+++++......                      ..+...++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            334556667788899999999888753221                      1233445556666677777777777777


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276          277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL  310 (514)
Q Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  310 (514)
                      ..+|.+..++..+..++...|+..+|++.|+++.
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            7777777777777777777777777776666553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.58  E-value=0.0089  Score=53.95  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=106.0

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          236 ELFAELLQRFPNNIHILLEMAKVDAIIGK------------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       236 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .-+++.++.+|.+.++|..+....-..-.            .+.-+.++++|++.+|++...+..+-....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            35677888999999999888766554422            456678899999999999999988888888888889999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHHHHHhccc------------------CchhHHHHHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDER------------------HIPGYIMKGNLLL  361 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~~~~  361 (514)
                      +.+++++..+|+++..|...-.....    -.++.....|.+++..-..                  ...++..+.....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876654444    3456777777777653211                  0122345555566


Q ss_pred             hcCChHHHHHHHHHhHhhc
Q 010276          362 SMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~  380 (514)
                      ..|-.+.|+..++-.++.+
T Consensus       166 ~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  166 QAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HCCchHHHHHHHHHHHHHH
Confidence            6777777777777776653

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.58  E-value=0.097  Score=51.88  Aligned_cols=227  Identities=12%  Similarity=0.014  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC--Ch-------HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc--
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--RP-------EVFVALSVLWER-KDERGALSYAEKSIRIDERHI--  350 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~--  350 (514)
                      +......+.......++.+|..+..++...-|.  .+       +..-..+.+... +++++|.+..+.++..-|.+.  
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            455667788888899999999888887664333  11       111222333333 899999999999998777653  


Q ss_pred             ---hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HH--HHHHHHHHHhcCCHHH--HHHHHHHH----HhhCC
Q 010276          351 ---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RS--YQGLVHSYLQFSKVKE--ALYAAREA----MKAMP  414 (514)
Q Consensus       351 ---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~--~~~l~~~~~~~~~~~~--A~~~~~~~----~~~~p  414 (514)
                         ......|.+..-.|++++|..+...+.+.....     ..  ....+.++..+|+...  ....+...    +...|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~  574 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP  574 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence               346778888999999999999999888774332     22  3445777788884333  33333222    22234


Q ss_pred             CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CCCCh--H-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--
Q 010276          415 QSAKALKLVGDVHASNASGREKAKKFYESALRL----EPGYL--G-AALALAELHVIEGRNGDAVSLLERYLKDWADD--  485 (514)
Q Consensus       415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~--~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--  485 (514)
                      -+.......+.++... -+.+.+..-..+.++.    .|...  . +...|+.+....|++++|...+........++  
T Consensus       575 ~~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~  653 (894)
T COG2909         575 RHEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY  653 (894)
T ss_pred             cchhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence            4333444444444433 3355555555554443    23322  2 33479999999999999999999887765332  


Q ss_pred             h------HHHHHHHHHHHhccHHHHHHHHHH
Q 010276          486 S------LHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       486 ~------~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      .      ++..........|+.++|.....+
T Consensus       654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            1      222222334457888888877665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.58  E-value=0.091  Score=53.95  Aligned_cols=328  Identities=13%  Similarity=-0.041  Sum_probs=161.2

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHH
Q 010276          147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI  226 (514)
Q Consensus       147 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  226 (514)
                      ...++...+.|++|+..|+++....|.-.+.+..+.+.++..                              ..++...-
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~  530 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITL------------------------------LEKASEQG  530 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHH------------------------------HHHHHhcC
Confidence            456777888999999999999999998877776665554211                              11111111


Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-----ChhH
Q 010276          227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-----DYSK  301 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~  301 (514)
                      ....+++|+..|+++- ..|.-|--+...|.+|.+.|++++-++++.-+++..|.++..-...-.+-.++.     +-..
T Consensus       531 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (932)
T PRK13184        531 DPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE  609 (932)
T ss_pred             ChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            1134666777776643 345556667777777778888888888888888777776543222211111111     1112


Q ss_pred             HHHHHHHHhhcCCCChH-----------------------------H---HHHHHHHHhhcChhHHHHHHHHHHHhcccC
Q 010276          302 LSKLVHDLLSIDPSRPE-----------------------------V---FVALSVLWERKDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~-----------------------------~---~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~  349 (514)
                      +....--++...|....                             .   .+.+-..+..|...--...++++....|- 
T Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  688 (932)
T PRK13184        610 ALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY-  688 (932)
T ss_pred             HHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH-
Confidence            22222222222232210                             0   01111111123333334445555444332 


Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDLR---------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                       .+....-.+....|.++-+.......-+.     .|...         .+..-..+......++++.+.+.   ...|.
T Consensus       689 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  764 (932)
T PRK13184        689 -RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPT  764 (932)
T ss_pred             -HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHH
Confidence             44444444556778877665554433221     11111         12222333344446666654332   22232


Q ss_pred             CHHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh---CCCchH
Q 010276          416 SAKALK-LVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAVSLLERYLKD---WADDSL  487 (514)
Q Consensus       416 ~~~~~~-~l~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~  487 (514)
                      .....+ ..+.-.... ++.+ .+-.+.+.+...+.    +........++|....++++|-+.+...-..   ...+.+
T Consensus       765 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  842 (932)
T PRK13184        765 LILYAFDLFAIQALLD-EEGE-SIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEA  842 (932)
T ss_pred             HHHHHHHHHHHHHHHh-ccch-HHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchH
Confidence            221111 111111111 2222 22222222222111    1223344566777778888888887443211   112347


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          488 HVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      +...|..+...++.+-|..+|..+.
T Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~  867 (932)
T PRK13184        843 FVLYGCYLALTEDREAAKAHFSGCR  867 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHHhhcc
Confidence            7777777777888888888776654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.086  Score=50.56  Aligned_cols=123  Identities=9%  Similarity=0.006  Sum_probs=72.7

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchh---------hhhhhhhhhhccccCCCCcccccccCChhH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ---------NSTSSRSSLSTSNRSSSPNSFNVSAINENE  109 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  109 (514)
                      ..++++.|.++|+.....-+++-|...|-++-.. |...-.         ....+.+...-|.+++|+..+....     
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-----  761 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-----  761 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-----
Confidence            3456789999999999999999998888775332 211000         0112333333455555555442111     


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276          110 VKYKIASCHFALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKEC  167 (514)
Q Consensus       110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  167 (514)
                      -+-.-...+.+.|++-...++++.=...   ..-..++..+|..+.....+++|.++|...
T Consensus       762 rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  762 RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1112224455667777777766652222   234567778888888888888888887764

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0014  Score=56.37  Aligned_cols=96  Identities=23%  Similarity=0.276  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhc---CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELR---PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV  426 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  426 (514)
                      .+..-|+-|++..+|..|+..|.+.++..   |+.  ..|.+.+-+....|+|..|+..+.+++..+|.+..+++.-+.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34456777777777777777777777653   332  2367777777777777777777777777777777777777777


Q ss_pred             HHhcCCChHHHHHHHHHHHhhC
Q 010276          427 HASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       427 ~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      +..+ ..+.+|..+.+..+.++
T Consensus       163 ~~eL-e~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  163 LLEL-ERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHH-HHHHHHHHHHhhhhhhh
Confidence            7777 77777777777765554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.47  E-value=0.00027  Score=38.87  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccC
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIV   76 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   76 (514)
                      ++++.+|.++.+.|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999864

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.46  E-value=0.07  Score=47.21  Aligned_cols=159  Identities=15%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCChH---HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 010276          353 YIMKGNLLLSMKRPE---AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVH  427 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~---~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~  427 (514)
                      +..++.++...+.++   +|....+.+....|+. ..+...-.+..+.++.+++.+.+.+++...+-. ...-..+..+.
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~  166 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK  166 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            455666666666544   3334444444445554 233233344444677777777777777654311 11111122221


Q ss_pred             HhcCCChHHHHHHHHHHHhh--CCCChHHHHH---HHHHHHHcC--ChhHH--HHHHHHHHh----hC--CCc-------
Q 010276          428 ASNASGREKAKKFYESALRL--EPGYLGAALA---LAELHVIEG--RNGDA--VSLLERYLK----DW--ADD-------  485 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~---la~~~~~~g--~~~~A--~~~~~~~~~----~~--~~~-------  485 (514)
                      .-.......|...+...+..  .|.... +..   +..++...+  +....  ++.+...+.    ..  |-+       
T Consensus       167 ~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~  245 (278)
T PF08631_consen  167 QLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI  245 (278)
T ss_pred             HHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            11113345566666555542  222211 222   111222111  11122  222222222    11  111       


Q ss_pred             -hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          486 -SLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       486 -~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                       ...++.|...++.++|.+|..+|+-++
T Consensus       246 ~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  246 HTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence             356677888889999999999998765

It is also involved in sporulation [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.43  E-value=0.082  Score=47.40  Aligned_cols=157  Identities=11%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCC
Q 010276          227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCD  298 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  298 (514)
                      ..+++..+...+..+-..  .++.....++.++...    .+..+|..+|..+.  ...++.+.+.+|.++..    ..+
T Consensus        53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence            446677777777766542  2235566666666543    34666777777433  34456666667777665    336


Q ss_pred             hhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhhcC--------hhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCC
Q 010276          299 YSKLSKLVHDLLSIDPSR-PEVFVALSVLWERKD--------ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKR  365 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  365 (514)
                      ..+|..+|.++....-.. ......++..+..|.        ...|...|.++-...  ++.+...+|.+|..    ..+
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence            677777777766653322 233555666555542        124444444444333  34444444544432    224


Q ss_pred             hHHHHHHHHHhHhhcCChHHHHHHH
Q 010276          366 PEAAVIAFRGAQELRPDLRSYQGLV  390 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~  390 (514)
                      +.+|...|.++.+... ....+.++
T Consensus       207 ~~~A~~wy~~Aa~~g~-~~a~~~~~  230 (292)
T COG0790         207 LKKAFRWYKKAAEQGD-GAACYNLG  230 (292)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHH
Confidence            4555555555544433 33344444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.42  E-value=0.019  Score=52.39  Aligned_cols=144  Identities=18%  Similarity=0.143  Sum_probs=93.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHH
Q 010276          240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------------D------------PYI---MTYMDEYA  290 (514)
Q Consensus       240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------~------------~~~---~~~~~~l~  290 (514)
                      ..+..+|-+.+++..++.++..+|+.+.|.+.+++++=.              +            +.|   ..+.....
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            345789999999999999999999999999998888531              1            111   23445556


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCC-ChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcc-----cCchhHHHHHHHHHh
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPS-RPEVFVALSVLWER--KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLS  362 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  362 (514)
                      ..+.+.|-+..|.++.+-++.++|. ||-........+..  ++++--++.++.......     .-|..-+..+.++..
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence            6677777777777777777777777 55544444443333  666655555555433111     123455566666666


Q ss_pred             cCCh---------------HHHHHHHHHhHhhcCCh
Q 010276          363 MKRP---------------EAAVIAFRGAQELRPDL  383 (514)
Q Consensus       363 ~~~~---------------~~A~~~~~~~~~~~~~~  383 (514)
                      .++.               ++|...+.+|+...|..
T Consensus       191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            6666               66667777776666653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.41  E-value=0.02  Score=51.77  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHhcCC------------hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276          337 SYAEKSIRIDERHIPGYIMKGNLLLSMKR------------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  403 (514)
                      .-+++.++.+|.+..+|..+....-..-.            .+.-+.+|++|++.+|++ ..+..+-....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34667777788888887777665433322            223334444444444444 33333333334444444444


Q ss_pred             HHHHHHHhhCCCCHHHHHH
Q 010276          404 YAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~  422 (514)
                      ..+++++..+|+++..|..
T Consensus        86 ~~we~~l~~~~~~~~LW~~  104 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWRE  104 (321)
T ss_pred             HHHHHHHHHCCCChHHHHH
Confidence            4444444444444444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.32  E-value=0.021  Score=52.12  Aligned_cols=100  Identities=15%  Similarity=0.009  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-CC----CChHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRL-EP----GYLGAALAL  458 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~~----~~~~~~~~l  458 (514)
                      +.+.....+.+.|-+..|.++.+-.+.++|. |+-........|.-..++++--+..++..... .+    .-|...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            3456677778888888999988888888888 77666666665555547777666666654442 11    134566777


Q ss_pred             HHHHHHcCCh---------------hHHHHHHHHHHhhCCC
Q 010276          459 AELHVIEGRN---------------GDAVSLLERYLKDWAD  484 (514)
Q Consensus       459 a~~~~~~g~~---------------~~A~~~~~~~~~~~~~  484 (514)
                      +-++...++.               ++|...+.+++...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            7777777777               7888888888776653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.022  Score=44.35  Aligned_cols=136  Identities=15%  Similarity=0.104  Sum_probs=90.3

Q ss_pred             hcCCHHHHHHHHhcCCCC---CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276          120 ALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA  196 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~  196 (514)
                      ..|..++|+.-|..+...   ....-+.+..+.+..+.|+...|+..|.++-...|- +.....++++            
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARl------------  136 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARL------------  136 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHH------------
Confidence            567778888888776433   233445677788999999999999999998766552 2233233222            


Q ss_pred             ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276          197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  275 (514)
                                             .-+..+...|.|++-....+.+-. .+|-...+.-.+|..-++.|++.+|..+|..+
T Consensus       137 -----------------------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         137 -----------------------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             -----------------------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence                                   226667778888887776665532 34445566777888888888888888888887


Q ss_pred             HhhCCCCHHHHHHHHHH
Q 010276          276 RSIDPYIMTYMDEYAML  292 (514)
Q Consensus       276 ~~~~~~~~~~~~~l~~~  292 (514)
                      .. +...+......+.+
T Consensus       194 a~-Da~aprnirqRAq~  209 (221)
T COG4649         194 AN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             Hc-cccCcHHHHHHHHH
Confidence            76 33334444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.26  E-value=0.00014  Score=62.52  Aligned_cols=95  Identities=15%  Similarity=0.144  Sum_probs=86.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      ..+.-.+..|.+++|++.|..++..+|.....+...+.++..+++...|+..+..++.++|+....+-..+.....+|+|
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34666778899999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             hHHHHHHHHHhhcCC
Q 010276          300 SKLSKLVHDLLSIDP  314 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~  314 (514)
                      ++|...+..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999887653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.23  E-value=0.00078  Score=37.31  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      +++.+|.++..+|++++|...|++++++.|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            444455555555555555555555555544

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.22  E-value=0.056  Score=51.26  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             HHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276            9 TALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY   72 (514)
Q Consensus         9 ~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   72 (514)
                      ..+++.|+|..|..++..-+.             ...|..+|...+..=+++-|.+.|.++-.+
T Consensus       564 ~q~Ieag~f~ea~~iaclgVv-------------~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl  614 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGVT-------------DTDWRELAMEALEALDFETARKAYIRVRDL  614 (1081)
T ss_pred             hhhhhccchhhhhccccccee-------------cchHHHHHHHHHhhhhhHHHHHHHHHHhcc
Confidence            456778888887776553222             125778888888888899999988886543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.21  E-value=0.00073  Score=37.10  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +++.+|.++.+.|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56677777777777777777777777777653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.19  E-value=0.0007  Score=38.01  Aligned_cols=29  Identities=34%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYY   73 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~   73 (514)
                      ++..+|.++.+.|+|++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46789999999999999999999977654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.065  Score=49.91  Aligned_cols=237  Identities=17%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCChhHHHHHHH
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVH  307 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~  307 (514)
                      ....+.+.......|+++-.....+..+...|+.+.|+..++..++  +..    .-.++.++.++.-+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4445555555667898888888889999999998888888888877  222    2245677888888889999999998


Q ss_pred             HHhhcCCCChHHHHHHH-HHHhh---------cChhHHHHHHHHH---HHhcccCchhH---HHHHHHHHhcCChHHHHH
Q 010276          308 DLLSIDPSRPEVFVALS-VLWER---------KDERGALSYAEKS---IRIDERHIPGY---IMKGNLLLSMKRPEAAVI  371 (514)
Q Consensus       308 ~~~~~~~~~~~~~~~l~-~~~~~---------~~~~~A~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~  371 (514)
                      .+.+...-+.-.+..++ .++..         |+-+.+..+++..   +...|.+...-   ...+.-+...+.      
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------  401 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------  401 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence            88877655554444444 34433         3444444433332   23333332211   111111221111      


Q ss_pred             HHHHhHhhcCCh---HHHHHHHHHHHhc--CCHHHHHHHHHHHH---hh-CCCCH-HHHHHHHHHHHhcCCChHHHHHHH
Q 010276          372 AFRGAQELRPDL---RSYQGLVHSYLQF--SKVKEALYAAREAM---KA-MPQSA-KALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       372 ~~~~~~~~~~~~---~~~~~l~~~~~~~--~~~~~A~~~~~~~~---~~-~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                             .++..   ..+..++..+..-  ....+.. -++...   .. ++++. --...+|.++..+ |+...|..+|
T Consensus       402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~L-g~~~~a~~~f  472 (546)
T KOG3783|consen  402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNL-GDSEVAPKCF  472 (546)
T ss_pred             -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence                   11111   0123333222211  1122222 111111   11 23322 2346788888888 9999999999


Q ss_pred             HHHHhh---CCC----ChHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhCCCc
Q 010276          442 ESALRL---EPG----YLGAALALAELHVIEGR-NGDAVSLLERYLKDWADD  485 (514)
Q Consensus       442 ~~a~~~---~~~----~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~  485 (514)
                      ..+++.   ...    .|.+++.+|.++..+|. ..++..++.+|-+...+.
T Consensus       473 ~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  473 KIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            988743   111    26699999999999998 999999999998887664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.26  Score=47.46  Aligned_cols=200  Identities=12%  Similarity=0.006  Sum_probs=104.4

Q ss_pred             hcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                      ..-..++|++..+    ...+++.|.+++......-.++-|...|-++-. .|. ......|..+...            
T Consensus       675 e~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~------------  736 (1189)
T KOG2041|consen  675 EAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSK------------  736 (1189)
T ss_pred             HHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhH------------
Confidence            3344566766665    346889999999988887777777777766422 121 1111122111100            


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID  279 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  279 (514)
                                        ...+|.+-.--|++++|...|-.+-..   +     .....+...|+|-...+.++..-.-+
T Consensus       737 ------------------~~q~aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~  790 (1189)
T KOG2041|consen  737 ------------------EQQRAEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDD  790 (1189)
T ss_pred             ------------------HHHhHhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCc
Confidence                              012244444447777777777544221   1     11234445566655555554432211


Q ss_pred             CC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276          280 PY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK  356 (514)
Q Consensus       280 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      .+  -..++..+|..+.....|++|.++|...-...        ....++.. ..+++    ++.....-|++...+-.+
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~  858 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYRLELFGE----LEVLARTLPEDSELLPVM  858 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHHHHhhhh----HHHHHHhcCcccchHHHH
Confidence            11  13566777777777777777777766542211        11222222 22222    222333446666666667


Q ss_pred             HHHHHhcCChHHHHHHHHH
Q 010276          357 GNLLLSMKRPEAAVIAFRG  375 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~  375 (514)
                      |.++...|--++|.+.|-+
T Consensus       859 a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  859 ADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHhhchHHHHHHHHHh
Confidence            7777777777776666544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.15  E-value=0.00059  Score=38.32  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          488 HVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      +..||.+|...|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.08  E-value=0.0099  Score=41.67  Aligned_cols=73  Identities=23%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.   .+...+-.++..+|.-+.-...|++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            455666677777777777777777777777777777777777766543   3666666666666665444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.06  E-value=0.012  Score=42.13  Aligned_cols=90  Identities=19%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCC-----------hHHHHHHHHHHHhhCCCCHHHHH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGK-----------NDEAILNFEKVRSIDPYIMTYMD  287 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~  287 (514)
                      |..++..|++-+|+++.+..+...+++.   ..+..-|.++..+..           .-.++++|.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            6778899999999999999999887765   455555666654432           12345555555555555555555


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhh
Q 010276          288 EYAMLLKVKCDYSKLSKLVHDLLS  311 (514)
Q Consensus       288 ~l~~~~~~~~~~~~A~~~~~~~~~  311 (514)
                      .+|.-+.....|+++..-.++.+.
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhc
Confidence            555444444444555444444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.03  E-value=0.085  Score=41.05  Aligned_cols=82  Identities=15%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +..+..+-...++.+++...+..+--+.|+.+..-..-|.++... |++.+|+..++.+....|..+.+.-.++.|+..+
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            344444445555666666666655556666666666666666665 6666666666666555555555555566666555


Q ss_pred             CCh
Q 010276          466 GRN  468 (514)
Q Consensus       466 g~~  468 (514)
                      |+.
T Consensus        92 ~D~   94 (160)
T PF09613_consen   92 GDP   94 (160)
T ss_pred             CCh
Confidence            554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.90  E-value=0.024  Score=39.78  Aligned_cols=67  Identities=10%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCChh
Q 010276          234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~  300 (514)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++..  ..+...+..++...|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            3556777888899999999999999999999999999999999887765  445555555555555543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.80  E-value=0.045  Score=42.53  Aligned_cols=80  Identities=15%  Similarity=0.027  Sum_probs=67.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      ....+-...++.+++..++..+.-..|..+++-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+...|+.
T Consensus        15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            33555667788888888888888889999998888999999999999999999998888888888888888888887775

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.74  E-value=0.011  Score=36.33  Aligned_cols=37  Identities=16%  Similarity=0.103  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD  287 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  287 (514)
                      .++.+|..+++.|+|++|..+.+.+++.+|++..+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4555666666666666666666666666666655443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.70  E-value=0.31  Score=41.18  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HH
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--AK  418 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~  418 (514)
                      ..+|.+++..|+|..-.+.+++.-..+...             +.|..-...|..+++-.+-...|++++.+...-  |.
T Consensus       149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl  228 (440)
T KOG1464|consen  149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL  228 (440)
T ss_pred             chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence            468999999999988888887776543221             134444677888888888888899988764322  22


Q ss_pred             HH----HHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          419 AL----KLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       419 ~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      +.    -.=|..+.+. |++++|...|-.|++..
T Consensus       229 ImGvIRECGGKMHlre-g~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  229 IMGVIRECGGKMHLRE-GEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             HHhHHHHcCCcccccc-chHHHHHhHHHHHHhcc
Confidence            22    2234456665 88999998888888753

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.63  E-value=0.0068  Score=51.64  Aligned_cols=66  Identities=18%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      ..+.|+.++|...|+.++.+.|++ +++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344555555555555555555555 455555555555555555555555555555555555554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.61  E-value=0.011  Score=50.44  Aligned_cols=73  Identities=22%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM  291 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  291 (514)
                      ...|.-....|+.++|..+|+.++...|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3445666778899999999999999999999999999998888888889999999999999988887766544

>smart00028 TPR Tetratricopeptide repeats

Probab=96.54  E-value=0.0043  Score=33.60  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI   75 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   75 (514)
                      ..++.+|.+++..|++++|+..|+++++.+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46789999999999999999999999998774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.50  E-value=0.043  Score=39.45  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=52.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcC---CC-------hHHHHHHHHHHHhhCCCChHHHH
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAMPQSA---KALKLVGDVHASNA---SG-------REKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~---~~-------~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      +.-++..|++-+|+++.+..+...+++.   ..+..-|.++..+.   .+       .-.++++|.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            4455666666666666666666665554   33344455544331   11       13456666677777776666666


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      .+|.-+....-|+++..-.++++..
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            6666555555566666666665554

>PRK10941 hypothetical protein; Provisional

Probab=96.49  E-value=0.042  Score=47.66  Aligned_cols=76  Identities=9%  Similarity=-0.047  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL  326 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  326 (514)
                      .+..+-.++.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|++|.+-.....+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            4455667788888888888888888888888888888888888888888888888888888888888765554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.47  E-value=0.016  Score=35.61  Aligned_cols=40  Identities=13%  Similarity=-0.134  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276          142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL  181 (514)
Q Consensus       142 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  181 (514)
                      +.++.+|..+.+.|+|++|....+.+++..|++..+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4678899999999999999999999999999999887654

>PRK10941 hypothetical protein; Provisional

Probab=96.44  E-value=0.05  Score=47.19  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      ..++-.++.+.++++.|+.+.+.++...|+++.-+.-.|.+|.+. |.+..|...++..++..|+++.+-.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHH
Confidence            445566666777777777777777777777777777777777776 7777777777777777776665443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.42  E-value=0.073  Score=38.49  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC-------CCc-----hH
Q 010276          432 SGREKAKKFYESALRLEPGY------------LGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-----SL  487 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-----~~  487 (514)
                      |-+++|...+++++.....-            ...+-.|+..+..+|+|++++...++++...       .+.     .+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            66667777777766643221            2245557777777777777776666665533       222     24


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          488 HVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .+..+..+..+|+.++|+..|+.+-+
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            55667777788888888888887643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.42  E-value=0.64  Score=44.56  Aligned_cols=81  Identities=12%  Similarity=-0.023  Sum_probs=40.9

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------------CCCHHHHHHH
Q 010276          223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------------PYIMTYMDEY  289 (514)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l  289 (514)
                      ..+...|.+++|...---.+  -   ..-|..+|.-....=+++-|.+.|.++-.+.             .....--..+
T Consensus       564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl  638 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL  638 (1081)
T ss_pred             hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence            34556677777654321111  0   1234555665556666677776666553210             0000112345


Q ss_pred             HHHHHHhCChhHHHHHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~  308 (514)
                      +.++.-.|++.+|.++|.+
T Consensus       639 A~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            6666666777776666654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.41  E-value=0.03  Score=46.82  Aligned_cols=91  Identities=19%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             hcCCHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHhcCCChH-------HHHHHHHHHHhhCC--CC----hHH
Q 010276          395 QFSKVKEALYAAREAMKA----MPQS---AKALKLVGDVHASNASGRE-------KAKKFYESALRLEP--GY----LGA  454 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~~~~~~-------~A~~~~~~a~~~~~--~~----~~~  454 (514)
                      ....+++|++.|.-++-.    .+..   +..+..+|++|... |+.+       .|...|.++++...  ..    ..+
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~-~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL-GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            344677777777766532    1111   44556677777776 6643       34444444443321  11    235


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          455 ALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      .+.+|.+..+.|++++|..+|.+++.....+.
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            66677777777777777777777766655554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.31  E-value=0.93  Score=42.20  Aligned_cols=78  Identities=10%  Similarity=-0.030  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276          107 ENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRHCPFFIEAITALAEL  184 (514)
Q Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~  184 (514)
                      ++..+........+.+.+.+--.++.++ ...|.+++.|..-|.-.+..+. .+.|...|.++++.+|+++..|....++
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            3444444444444555577777777774 5569999999998887777665 8999999999999999999998765544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.15  E-value=0.19  Score=40.72  Aligned_cols=105  Identities=12%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      ...--.++..+|+.|.+.|++++|++.|.++........                            ...++.+.+.++.
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~----------------------------~~id~~l~~irv~   83 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG----------------------------HKIDMCLNVIRVA   83 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH----------------------------HHHHHHHHHHHHH
Confidence            445567899999999999999999999999877642111                            2356777888888


Q ss_pred             HhcCCHHHHHHHHhcCC---CCCcc----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 010276          119 FALGETKAAIVEMEGIP---SKARN----LQMSLLMAKLYRNSRHNRGAVACYKECLRHC  171 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  171 (514)
                      +..|++......+.++.   ..+.+    .......|..+...++|..|...|-.+....
T Consensus        84 i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   84 IFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            89999999888887742   22222    2234556778888999999999988876444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.14  E-value=0.11  Score=47.58  Aligned_cols=128  Identities=12%  Similarity=0.092  Sum_probs=101.3

Q ss_pred             HHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC-ChHHHHHHHHHHHhcCCHHH
Q 010276          323 LSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       323 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  401 (514)
                      +-..+..|+.-.|-.-+..++...|.+|......+.+....|.|+.+...+..+-..-. .+.+...+-......|++++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            33344448888888888889999999999888999999999999999888877655433 33566667777888999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      |.....-++...-+++++...-+...... |-++++..++++.+.++|..
T Consensus       376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l-~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        376 ALSTAEMMLSNEIEDEEVLTVAAGSADAL-QLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHhccccCChhheeeecccHHHH-hHHHHHHHHHHHHhccCChh
Confidence            99998888877777777776666666666 88899999999999888754

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.11  E-value=0.1  Score=47.77  Aligned_cols=129  Identities=10%  Similarity=0.030  Sum_probs=104.0

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276          223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL  302 (514)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  302 (514)
                      .-....|+.-.|-+....++...|..|......+.+....|+|+.+...+..+-..-.....+...+-......|++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            34566799999999999999999999999999999999999999999888766554444445566667778889999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch
Q 010276          303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP  351 (514)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~  351 (514)
                      .....-++...-.++++....+..... |-++++..++++.+.++|....
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            999999988777777776655544444 8889999999999998876443

>smart00028 TPR Tetratricopeptide repeats

Probab=95.99  E-value=0.014  Score=31.38  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      ++..+|.++...|++++|...++++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.98  E-value=0.58  Score=36.81  Aligned_cols=140  Identities=18%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML  292 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~  292 (514)
                      |..+.-+.+.+..++|+..|..+-+..-.+  .-+....+.+....|+...|+..|..+-...|..    -.+...-+.+
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l  141 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL  141 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence            444666667788888888888877654443  3355667788888888888888888876644322    1244555666


Q ss_pred             HHHhCChhHHHHHHHHHh-hcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276          293 LKVKCDYSKLSKLVHDLL-SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL  359 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      +...|.|+......+.+- ..+|-...+...||..-.+ |++.+|...|.+... +...|......+.+
T Consensus       142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            777777777665554432 2233344455555554444 777777777766654 33334444444443

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=95.98  E-value=1.9  Score=42.83  Aligned_cols=406  Identities=13%  Similarity=0.075  Sum_probs=210.1

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      ...+..+-..+++.|++++-...=+++..+.|..+..|.....-.                            ...-..+
T Consensus       113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~----------------------------~~mt~s~  164 (881)
T KOG0128|consen  113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDE----------------------------LSMTQSE  164 (881)
T ss_pred             hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHH----------------------------HhhccCc
Confidence            344555666667777777666666666666664443332211100                            0111235


Q ss_pred             CHHHHHHHHhcCCCCCccHHHHHHHHHHH-------HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHH
Q 010276          123 ETKAAIVEMEGIPSKARNLQMSLLMAKLY-------RNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF  195 (514)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~  195 (514)
                      ...++...+++......++..|...+...       ...++++....+|.++++.--....                   
T Consensus       165 ~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-------------------  225 (881)
T KOG0128|consen  165 ERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-------------------  225 (881)
T ss_pred             chhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-------------------
Confidence            55666666666544444444444433333       3345667777777777654321111                   


Q ss_pred             hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHH--H-HHHHhCChHHH
Q 010276          196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH----ILLEMA--K-VDAIIGKNDEA  268 (514)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la--~-~~~~~~~~~~A  268 (514)
                                    .....|..+...-..+...-..++-+.++...+... -+.+    -+....  . ......+++.|
T Consensus       226 --------------~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a  290 (881)
T KOG0128|consen  226 --------------EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDA  290 (881)
T ss_pred             --------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHH
Confidence                          011122222222333333344455556665555433 2211    111111  1 11122334444


Q ss_pred             HHH-------HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHH
Q 010276          269 ILN-------FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYA  339 (514)
Q Consensus       269 ~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~  339 (514)
                      ...       +++.++..|.....|..+.......|++..-...+++++...+.++..|...+.....  +-...+...+
T Consensus       291 ~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~  370 (881)
T KOG0128|consen  291 LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH  370 (881)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence            433       4444555555566777778888888988888888889888888888888888776554  4444566666


Q ss_pred             HHHHHhcccCchhHHHHHHHHHhcCCh-HHHHHHHHHhHhhcC----ChHHHHHHHHHHHh-------cCCHHHHHHHHH
Q 010276          340 EKSIRIDERHIPGYIMKGNLLLSMKRP-EAAVIAFRGAQELRP----DLRSYQGLVHSYLQ-------FSKVKEALYAAR  407 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~-------~~~~~~A~~~~~  407 (514)
                      .+++...|.....|-..-..+.+.+.. ..-...+.+++...-    +...+.....-...       ...+..|...+.
T Consensus       371 ~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt  450 (881)
T KOG0128|consen  371 PRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELT  450 (881)
T ss_pred             chhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence            667776666555443322222222221 112222222222100    00000000000001       112344444444


Q ss_pred             HHHhh-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          408 EAMKA-MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       408 ~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ..... .......+...|.+.....++.+.++......+.....+.. .|+....+-...|+...+..++++++....++
T Consensus       451 ~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~  530 (881)
T KOG0128|consen  451 ELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP  530 (881)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence            44433 12224556667777666657888888888877766555544 77777888888888888888888887654332


Q ss_pred             ----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          486 ----SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       486 ----~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                          .++..+-..-...|.++.....-++
T Consensus       531 ~~~~ev~~~~~r~Ere~gtl~~~~~~~~~  559 (881)
T KOG0128|consen  531 EDALEVLEFFRRFEREYGTLESFDLCPEK  559 (881)
T ss_pred             hhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence                2444445555556666665554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.98  E-value=0.14  Score=39.15  Aligned_cols=78  Identities=18%  Similarity=-0.000  Sum_probs=64.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      .......++.+++..++..+--..|+.+++-..-|.++...|++++|+..|+...+..+..+...-.++.|+..+|+.
T Consensus        17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            344445788888888888888889999888888899999999999999999998888777777777788888777764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.94  E-value=0.89  Score=38.59  Aligned_cols=188  Identities=12%  Similarity=0.106  Sum_probs=118.3

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhhC-----CCC-HHHHHHHHHHHHHh
Q 010276          227 ASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSID-----PYI-MTYMDEYAMLLKVK  296 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~  296 (514)
                      .....++|+..|+++++..|...    .++-.+..+.+++|++++-.+.|.+.+..-     .+. ......+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34578999999999999888663    467778899999999999999988876521     111 11222222222233


Q ss_pred             CChhHHHHHHHHHhhc--CCCChHHH----HHHHHHHhh-cChhHHHHHHHHHHHhccc------------CchhHHHHH
Q 010276          297 CDYSKLSKLVHDLLSI--DPSRPEVF----VALSVLWER-KDERGALSYAEKSIRIDER------------HIPGYIMKG  357 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~  357 (514)
                      .+.+--...|+..+..  +..+...|    ..+|.++.. ++|.+-.+.+.+.-.....            -.+++..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            3344444445544432  23333344    357888777 7777666666554432211            123344455


Q ss_pred             HHHHhcCChHHHHHHHHHhHhhc---CChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELR---PDLRS----YQGLVHSYLQFSKVKEALYAAREAMKAMP  414 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  414 (514)
                      .+|..+.+-..-...|++++.+.   |....    .-.=|..+.+.|++++|-..|-++.+...
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD  262 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD  262 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence            67777788788888899988764   33321    22336778899999999999888887543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.93  E-value=0.15  Score=38.93  Aligned_cols=73  Identities=11%  Similarity=-0.040  Sum_probs=38.0

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276          395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN  468 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  468 (514)
                      ..++.+++...+..+--+.|+.+..-..-|.++... |++.+|+..++...+-.+..+...-.++.|+..+|+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r-g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR-GNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc-CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            345555555555555555555555555555555555 5555555555555544444444444455555444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=1.6  Score=41.49  Aligned_cols=49  Identities=22%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             hcCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          228 SNDYKGGLELFAELLQR------------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       228 ~~~~~~A~~~~~~~~~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|....++++
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34567777777666543            24445666666666666676666666666654

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.76  E-value=2.5  Score=42.40  Aligned_cols=314  Identities=10%  Similarity=0.053  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      .-.+.-+.-.++.|++..+......+...|-.+  +.....+....+..  ....+...++.+|+.+........     
T Consensus        34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~--yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~-----  104 (644)
T PRK11619         34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYP--YLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSR-----  104 (644)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHh--HHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHH-----
Confidence            345677788888999988888877775444322  22222222222221  122455556666765544322110     


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA  268 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  268 (514)
                                                |      -..+...+++..-+..+    ...|.+.......+......|+.++|
T Consensus       105 --------------------------~------l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A  148 (644)
T PRK11619        105 --------------------------F------VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEA  148 (644)
T ss_pred             --------------------------H------HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                      0      11122345555544422    23466777777777777778887777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhC------------------ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276          269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKC------------------DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-  329 (514)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  329 (514)
                      .....++-......+.....+-..+...|                  +...|..+...+    +.+...   ++..... 
T Consensus       149 ~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al  221 (644)
T PRK11619        149 WQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKL  221 (644)
T ss_pred             HHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHH
Confidence            76666665544433433333333333333                  333332222211    111000   1111111 


Q ss_pred             -cChhHHHHHHHHHHHhcccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHH
Q 010276          330 -KDERGALSYAEKSIRIDERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEA  402 (514)
Q Consensus       330 -~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A  402 (514)
                       .+.......+..   ..|.. ......++..-....+.+.|...+.+.....+-.     ..+..++.-....+...+|
T Consensus       222 ~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a  298 (644)
T PRK11619        222 QNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQ  298 (644)
T ss_pred             HHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHH
Confidence             222222111111   01111 0111222333334555666777766543333211     2233444333333324556


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276          403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL  479 (514)
Q Consensus       403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  479 (514)
                      ...+..+..... +....-....+.... ++++.....+...-....+.....+-+|+.+...|+.++|...|+++.
T Consensus       299 ~~w~~~~~~~~~-~~~~~e~r~r~Al~~-~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        299 AKWRDDVIMRSQ-STSLLERRVRMALGT-GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHhcccccC-CcHHHHHHHHHHHHc-cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            666655443222 223333333333344 677666666655433233345566667777666777777777777763

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.65  E-value=2.8  Score=42.09  Aligned_cols=202  Identities=10%  Similarity=-0.003  Sum_probs=96.9

Q ss_pred             HHhCChhHHHHHHHHHhhcCCCChH----HHHHHHHHHhhcC-hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276          294 KVKCDYSKLSKLVHDLLSIDPSRPE----VFVALSVLWERKD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA  368 (514)
Q Consensus       294 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      ....+.+.|...+.+.....+-+.+    ++..++.-..... .+++...+..+..... +....-....+....++++.
T Consensus       252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHH
Confidence            3444555666666554333332222    1222222222232 4555555555432221 22223333334446666666


Q ss_pred             HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh-H--HH-HHHHHH
Q 010276          369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-E--KA-KKFYES  443 (514)
Q Consensus       369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~--~A-~~~~~~  443 (514)
                      +...+..+-....+. ...+-+|.++...|+.++|...|+++..  +.+  .|-.++.-..   |.. .  .. ...-..
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~L---g~~~~~~~~~~~~~~~  403 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRL---GEEYPLKIDKAPKPDS  403 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHc---CCCCCCCCCCCCchhh
Confidence            655555542211111 4456666666667777777777777633  221  2212221111   111 0  00 000000


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHH
Q 010276          444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYE  509 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  509 (514)
                      .+   +.  ......+..+...|+...|...+..++.. .++.-...++.+....|.++.|+....
T Consensus       404 ~~---~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~  463 (644)
T PRK11619        404 AL---TQ--GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATI  463 (644)
T ss_pred             hh---cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence            00   01  12345566777888888888888877765 444556677777778888777765543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=1.8  Score=40.89  Aligned_cols=231  Identities=12%  Similarity=-0.007  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH----HHHHHHHHHhh-cChhHHHHHHH
Q 010276          266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE----VFVALSVLWER-KDERGALSYAE  340 (514)
Q Consensus       266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~-~~~~~A~~~~~  340 (514)
                      +...+.+.......|.++......+..+...|+.+.|+..+...++  +.-..    .++.++.++.- .+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3444445555566777777777778888888887777777776665  22111    12233333333 66777777777


Q ss_pred             HHHHhcccCchhHHHHH-HHHHh--------cCChHHHHHHHHHhH---hhcCCh----HHHHHHHHHHHhcCCHHHHHH
Q 010276          341 KSIRIDERHIPGYIMKG-NLLLS--------MKRPEAAVIAFRGAQ---ELRPDL----RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       341 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      ...+.+.-.--.|..++ -++..        .|+-+.|-..++...   ...|.+    .-....+.-+...+.      
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------  401 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------  401 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence            76665544333333333 22221        223333333333222   222222    111111222221111      


Q ss_pred             HHHHHHhhCCCCHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHh---h-CCCChH-HHHHHHHHHHHcCChhHHHHHHH
Q 010276          405 AAREAMKAMPQSAK--ALKLVGDVHASNA-SGREKAKKFYESALR---L-EPGYLG-AALALAELHVIEGRNGDAVSLLE  476 (514)
Q Consensus       405 ~~~~~~~~~p~~~~--~~~~l~~~~~~~~-~~~~~A~~~~~~a~~---~-~~~~~~-~~~~la~~~~~~g~~~~A~~~~~  476 (514)
                             .++..+.  .+..++.++.... ...++.. -++...+   . ++++.- -+..+|.++..+|+...|..+|.
T Consensus       402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~  473 (546)
T KOG3783|consen  402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK  473 (546)
T ss_pred             -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                   0111111  1222222222210 1122222 1111121   2 222222 44568999999999999999999


Q ss_pred             HHHhhC---CC-----chHHHHHHHHHHHhcc-HHHHHHHHHHHh
Q 010276          477 RYLKDW---AD-----DSLHVKLAQVFAATNM-LQEALSHYEAAL  512 (514)
Q Consensus       477 ~~~~~~---~~-----~~~~~~l~~~~~~~g~-~~~A~~~~~~al  512 (514)
                      ..++..   .+     +-+++.+|..|..+|. ..++.+++.+|-
T Consensus       474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr  518 (546)
T KOG3783|consen  474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR  518 (546)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            988542   11     2499999999999998 999999999874

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.62  E-value=0.58  Score=34.09  Aligned_cols=84  Identities=21%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             HhcCChHHHHHHHHHhHhhcCC---h----------HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCHH--
Q 010276          361 LSMKRPEAAVIAFRGAQELRPD---L----------RSYQGLVHSYLQFSKVKEALYAAREAMK-------AMPQSAK--  418 (514)
Q Consensus       361 ~~~~~~~~A~~~~~~~~~~~~~---~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~--  418 (514)
                      ...|-|++|...++++.+....   .          -.+-.|+..+..+|+|++++....+++.       ++.+...  
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            4456666666666666654321   1          1245566666666666666655555543       2222222  


Q ss_pred             --HHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          419 --ALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       419 --~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                        +.+..+..+... |+.++|+..|+.+-
T Consensus       100 IaaVfsra~Al~~~-Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen  100 IAAVFSRAVALEGL-GRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CChHHHHHHHHHHH
Confidence              223444455554 55555555555543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.66  Score=44.03  Aligned_cols=129  Identities=17%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhhcCCCChHHHHHH--HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH-
Q 010276          300 SKLSKLVHDLLSIDPSRPEVFVAL--SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG-  375 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~~~~~~l--~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-  375 (514)
                      .-++..+...+..+|.++..+...  ...+.. ++...+.......+..+|.+..+..+++......|....+...+.. 
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            335555566666777777765443  222222 6666777788888888888888888888887777777666666555 


Q ss_pred             hHhhcCCh-HH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          376 AQELRPDL-RS------YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       376 ~~~~~~~~-~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      +....|++ ..      ++.++......|+..++....+++....|.++.+...+.....
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~  187 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ  187 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            66667766 22      2335777777888888888888888888887665555544433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.57  E-value=0.46  Score=39.84  Aligned_cols=34  Identities=18%  Similarity=0.091  Sum_probs=22.9

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY   72 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   72 (514)
                      +...+..++.+|..|...|+-+....++++|+..
T Consensus       114 ~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~  147 (214)
T PF09986_consen  114 PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF  147 (214)
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            4466677777788887777766666666666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.54  E-value=0.92  Score=36.83  Aligned_cols=103  Identities=12%  Similarity=-0.037  Sum_probs=64.6

Q ss_pred             ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhH
Q 010276          139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR  218 (514)
Q Consensus       139 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (514)
                      .-..++..+|..|.+.|+.++|++.|.++............                                     ..
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-------------------------------------~~   76 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-------------------------------------MC   76 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-------------------------------------HH
Confidence            34567788999999999999999999997765543222221                                     12


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRF--PNNIH----ILLEMAKVDAIIGKNDEAILNFEKVRSI  278 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~  278 (514)
                      +....+.+..+++......+.++-...  +.+.+    .....|..+...++|.+|.+.|-.+...
T Consensus        77 l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   77 LNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            333666667788888877777765432  22222    2333455556667777777766665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=2  Score=40.80  Aligned_cols=136  Identities=18%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh---------------------cCChH----HHHHHHHHHHhcCCHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---------------------RPDLR----SYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~----~~~~l~~~~~~~~~~~~  401 (514)
                      |-+.+.+..++.+...+|+.+-|....++++-.                     .|.+.    +.+.....+.+.|-+..
T Consensus       281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT  360 (665)
T KOG2422|consen  281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT  360 (665)
T ss_pred             CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence            444555666666666666666666655555421                     11221    12223344455667777


Q ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHH-----HhhCCCChHHHHHHHHHHHHcCC---hhHHH
Q 010276          402 ALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESA-----LRLEPGYLGAALALAELHVIEGR---NGDAV  472 (514)
Q Consensus       402 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~la~~~~~~g~---~~~A~  472 (514)
                      |.++++-.++++|. +|-....+..+|.-...+|.=-+..++..     +..-|+. ..-..+|..|.....   ...|.
T Consensus       361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~  439 (665)
T KOG2422|consen  361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSAL  439 (665)
T ss_pred             HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHH
Confidence            77777777777776 55555555555444334444444444433     2223332 122234444444443   35566


Q ss_pred             HHHHHHHhhCC
Q 010276          473 SLLERYLKDWA  483 (514)
Q Consensus       473 ~~~~~~~~~~~  483 (514)
                      ..+.+|+...|
T Consensus       440 ~~l~qAl~~~P  450 (665)
T KOG2422|consen  440 NALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHhCc
Confidence            66666666555

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.48  E-value=0.026  Score=46.11  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ..+.++.+.|.+.|.+++...|+....|+.+|....+. |+++.|.+.|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~eka-g~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKA-GEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhc-ccHHHHHHHHHHHHcCCccc
Confidence            44556666666777777777677666677777666665 67777777777777766655

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.21  Score=47.52  Aligned_cols=95  Identities=8%  Similarity=0.036  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM  291 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  291 (514)
                      ++..|...++..+|..+++.|...+...|.+      ......++.||....+.|.|.++++++-+.+|.++-.......
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3566888899999999999999999877765      4566788999999999999999999999999999988888888


Q ss_pred             HHHHhCChhHHHHHHHHHhhc
Q 010276          292 LLKVKCDYSKLSKLVHDLLSI  312 (514)
Q Consensus       292 ~~~~~~~~~~A~~~~~~~~~~  312 (514)
                      +....|.-++|+.+.......
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            899999999999988776654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.35  E-value=0.42  Score=35.75  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=13.9

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276          420 LKLVGDVHASNASGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      .+.++.-+.+. ++|+.++.+....++..|++.
T Consensus        74 lyYLAvg~yRl-keY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   74 LYYLAVGHYRL-KEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hhhhHHHHHHH-hhHHHHHHHHHHHHhhCCCcH
Confidence            33444444444 444444444444444444443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.25  E-value=0.036  Score=45.34  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA  417 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  417 (514)
                      ....+.++.+.|.+.|.+++.+.|+. ..|+.+|....+.|+++.|...|++.++++|++.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34567889999999999999999998 7899999999999999999999999999999864

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.25  E-value=0.84  Score=34.25  Aligned_cols=77  Identities=17%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHHHHhCC---hHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHH
Q 010276          248 NIHILLEMAKVDAIIGK---NDEAILNFEKVRS-IDPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA  322 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  322 (514)
                      ..+..+.+++++....+   ..+.+.+++..++ -.|.. .+..+.++..+++.++|+.++.+.+.+++..|++..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45677888888877654   4567888888886 44433 5677888888999999999999999999999988877654


Q ss_pred             HH
Q 010276          323 LS  324 (514)
Q Consensus       323 l~  324 (514)
                      .-
T Consensus       111 k~  112 (149)
T KOG3364|consen  111 KE  112 (149)
T ss_pred             HH
Confidence            43

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=95.11  E-value=2.1  Score=37.40  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             CchHHHHHHHHhhhhhhHHHhHHHHHHHhhccC
Q 010276            2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAIN   34 (514)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~   34 (514)
                      |.+.+-+..+++.|++.++..++..++.+....
T Consensus        11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~   43 (260)
T PF04190_consen   11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKS   43 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence            345566777888888888888888777755543

; PDB: 3LKU_E 2WPV_G.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=2.1  Score=36.85  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh-h
Q 010276            5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST-S   83 (514)
Q Consensus         5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~   83 (514)
                      ++.++..+..++++.++.....++............++-.+...++..|...|++..--+.....-+.-.+....... .
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            567788899999999999888887643333333344556678889999999998765444333222111111111000 0


Q ss_pred             hhhhhhccccCCCCccc--------ccccCC--------hhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcc
Q 010276           84 SRSSLSTSNRSSSPNSF--------NVSAIN--------ENEVKYKIASCHFALGETKAAIVEMEGI-------PSKARN  140 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~--------~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~~  140 (514)
                      .+...  ..++.....+        ...++.        ..+.-..++..++..|.|.+|+..+..+       ...+.-
T Consensus        87 irtLi--ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L  164 (421)
T COG5159          87 IRTLI--EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL  164 (421)
T ss_pred             HHHHH--HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence            00000  0111111111        001111        1233446788889999999999776543       334566


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010276          141 LQMSLLMAKLYRNSRHNRGAVACYKECL  168 (514)
Q Consensus       141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l  168 (514)
                      ...+..-..+|....+..++...+..+-
T Consensus       165 i~vhllESKvyh~irnv~KskaSLTaAr  192 (421)
T COG5159         165 ITVHLLESKVYHEIRNVSKSKASLTAAR  192 (421)
T ss_pred             eehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence            6777888888888888888877776554

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=2.4  Score=37.48  Aligned_cols=272  Identities=15%  Similarity=0.149  Sum_probs=153.8

Q ss_pred             HHHHHHHHhhhhhhHHHhHHHHHHHhhc--cCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            5 KEQITALIDQGLYDSAQMLGCFLVSSSA--INGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      .+.++.+...++++.++.+...++.-..  .++...-...-.+...+|+.+.+.|++.+=....+..-......+.+...
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            5677888888888888888887776311  11111223445678899999999999876655554432221111111111


Q ss_pred             -----hhhhhhhc-cccCCCCccc-ccccCC--------hhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcc
Q 010276           83 -----SSRSSLST-SNRSSSPNSF-NVSAIN--------ENEVKYKIASCHFALGETKAAIVEMEGI-------PSKARN  140 (514)
Q Consensus        83 -----~~~~~~~~-~~~~~a~~~~-~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~~  140 (514)
                           +....... ++...-.... .+..+.        ...+-.++...|...++|.+|+.....+       ...+.-
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence                 11111110 0011000000 111111        1223347788899999999999765543       233445


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhc-----CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH
Q 010276          141 LQMSLLMAKLYRNSRHNRGAVACYKECLRH-----CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW  215 (514)
Q Consensus       141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (514)
                      .+++..-...|....+..+|...+..+-..     +|....+...|                                  
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL----------------------------------  213 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL----------------------------------  213 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH----------------------------------
Confidence            666777788888889988888888766532     12222222211                                  


Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHH---HHHHHHHHHHHhCChHHHHHHH--HHHHhhCCCCHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIH---ILLEMAKVDAIIGKNDEAILNF--EKVRSIDPYIMTYMD  287 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~---~~~~la~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~  287 (514)
                          .-|..+....+|..|..+|-++++-+.   ++..   .+-.+-.|-...+..++--..+  +.+++....+.+++.
T Consensus       214 ----qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk  289 (411)
T KOG1463|consen  214 ----QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK  289 (411)
T ss_pred             ----hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence                124555556889999999988887432   1222   3333444445556666544443  345555666677777


Q ss_pred             HHHHHHHH--hCChhHHHHHHHHHhhcCC
Q 010276          288 EYAMLLKV--KCDYSKLSKLVHDLLSIDP  314 (514)
Q Consensus       288 ~l~~~~~~--~~~~~~A~~~~~~~~~~~~  314 (514)
                      ..+..+.+  ..+|+.|+.-|..-+..+|
T Consensus       290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  290 AVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            77777654  4567777777776665443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.98  E-value=1.4  Score=41.83  Aligned_cols=54  Identities=11%  Similarity=0.216  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276          107 ENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC  167 (514)
Q Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  167 (514)
                      +++.++.|   .++.|+.+.|.+..+.+    .++..|..+|.....+|+++-|..+|+++
T Consensus       320 D~~~rFeL---Al~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  320 DPDHRFEL---ALQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             -HHHHHHH---HHHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             ChHHHhHH---HHhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            44455544   45789999999998766    47889999999999999999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.98  E-value=0.068  Score=45.92  Aligned_cols=86  Identities=13%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276          238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YAMLLKVKCDYSKLSKLVHDLLSIDPSR  316 (514)
Q Consensus       238 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~  316 (514)
                      |.+.....|+++..|...+......|.+.+--..|.++++..|.+++.|.. -+.-+...++++.+...+.+.+..+|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334445677777777777777777777777778888888888888777766 4445666778888888888888888888


Q ss_pred             hHHHHHH
Q 010276          317 PEVFVAL  323 (514)
Q Consensus       317 ~~~~~~l  323 (514)
                      |..|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            7776653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.96  E-value=0.054  Score=31.41  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYY   73 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   73 (514)
                      +.++..+|..+...|++++|+.++++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3478899999999999999999999999874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.86  E-value=2  Score=40.70  Aligned_cols=28  Identities=11%  Similarity=0.033  Sum_probs=13.4

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~  275 (514)
                      ++..|..+|......|+++-|.++|+++
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            3444444455444555554444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=2.8  Score=40.08  Aligned_cols=130  Identities=18%  Similarity=0.096  Sum_probs=99.3

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHH
Q 010276          263 GKNDEAILNFEKVRSIDPYIMTYMDE--YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSY  338 (514)
Q Consensus       263 ~~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~  338 (514)
                      |...-++..+...+.++|.++..+..  +...+...+....+.-.....+..+|.+.....+++..... |... -+...
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444777777777788888876544  46777778888889999999999999999999999987777 4444 55555


Q ss_pred             HHHHHHhcccCchhHHHH------HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276          339 AEKSIRIDERHIPGYIMK------GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS  392 (514)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~  392 (514)
                      .+.+....|.+......+      +......|+..++....+++....|.+ .....+...
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            555888888887765555      888888999999999999999999987 444444333

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.76  E-value=0.063  Score=46.11  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccC
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~  349 (514)
                      |.++....|.++..|...+......|.+.+.-.+|.+++..+|.+.+.|...+..-..  ++++.+...+.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            3445556788999999999999999999999999999999999999999875443222  99999999999999999999


Q ss_pred             chhHHH
Q 010276          350 IPGYIM  355 (514)
Q Consensus       350 ~~~~~~  355 (514)
                      |..|..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            998754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.68  E-value=0.046  Score=31.72  Aligned_cols=26  Identities=38%  Similarity=0.395  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYL  479 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~  479 (514)
                      ++.++|.+|...|++++|..++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            34455555555555555555555544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.63  E-value=1.3  Score=36.12  Aligned_cols=56  Identities=16%  Similarity=0.039  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCChhHHH
Q 010276          415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      +++...+.+|..|.+  .+.++++..+-+++++.+.    +++++..|+.++.++|+++.|.
T Consensus       139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            346666666666664  4666677776666665332    2556666666666666666654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.49  Score=45.24  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH  427 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  427 (514)
                      +-|.-.++..+|..+++.|...+...|.+       .....+..||....+.+.|.++++++-+.+|.++-....+-.+.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            34444555666666666666666555543       12445566666666666666666666666666655555555555


Q ss_pred             HhcCCChHHHHHHHHHHHh
Q 010276          428 ASNASGREKAKKFYESALR  446 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~  446 (514)
                      ... +.-++|+....+...
T Consensus       439 ~~E-~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  439 LAE-DKSEEALTCLQKIKS  456 (872)
T ss_pred             HHh-cchHHHHHHHHHHHh
Confidence            554 566666666555444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.41  E-value=0.25  Score=45.96  Aligned_cols=96  Identities=16%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      +.-.+..+....++..|.+++...|.....+...+.++++.   |+.-.|+.-...+++++|....+++.++.++...++
T Consensus       381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR  460 (758)
T ss_pred             ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence            44444455678899999999999999999999999888875   566678888888999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCh
Q 010276          299 YSKLSKLVHDLLSIDPSRP  317 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~  317 (514)
                      +.+|+++...+....|.+.
T Consensus       461 ~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  461 YLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHhhhhHHHHhhcCchhh
Confidence            9999999988888888553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.36  E-value=0.56  Score=38.16  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             HHHhCChhHHHHHHHHHhhc-CCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhccc----CchhHHHHHHHHHhcCChH
Q 010276          293 LKVKCDYSKLSKLVHDLLSI-DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER----HIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  367 (514)
                      ++....-+.|...|-++-.. .-++++..+.+|..|...+.++++..+.++++..+.    +++++..++.++...|+++
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34443445555555444332 224577777777777777777888888887776443    3667777777777777777


Q ss_pred             HHH
Q 010276          368 AAV  370 (514)
Q Consensus       368 ~A~  370 (514)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            663

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=4  Score=37.24  Aligned_cols=127  Identities=12%  Similarity=0.018  Sum_probs=99.3

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CChhHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYSKL  302 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A  302 (514)
                      .-.++-+.+...+++.+|++-.+|+.+..++.+.+.  +..=+...+++++.+|.+..+|...=.+....    ....+=
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            356777888999999999999999999999998764  57889999999999999987776554444333    234666


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHhh-------cC------hhHHHHHHHHHHHhcccCchhHHH
Q 010276          303 SKLVHDLLSIDPSRPEVFVALSVLWER-------KD------ERGALSYAEKSIRIDERHIPGYIM  355 (514)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~------~~~A~~~~~~~~~~~~~~~~~~~~  355 (514)
                      +++..+++..++.+..+|.....++..       |+      ...-++....++-.+|++..+|+.
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            788889999999999999988877764       42      124556667788889999888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.28  E-value=0.16  Score=47.19  Aligned_cols=88  Identities=13%  Similarity=-0.022  Sum_probs=64.9

Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      +....++..|.+++...|.....+.+.+.++..    |+.-.|+.-...+++++|....+++.++.++...+++.+|+.+
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            345566777777777777777777766666655    5555777777778888888888888888888888888888888


Q ss_pred             HHHhHhhcCChH
Q 010276          373 FRGAQELRPDLR  384 (514)
Q Consensus       373 ~~~~~~~~~~~~  384 (514)
                      ...+....|.+.
T Consensus       468 ~~alq~~~Ptd~  479 (758)
T KOG1310|consen  468 HWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhcCchhh
Confidence            877777777553

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.03  E-value=0.88  Score=41.27  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      ..+..||.+.++.+-|+....+.+..+|....-+...|.++..+ .+|.+|-+.+--+.
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L-eRy~eAarSamia~  289 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL-ERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            46788999999999999999999999999888888999998888 88888877665543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.01  E-value=3.9  Score=35.75  Aligned_cols=26  Identities=12%  Similarity=-0.106  Sum_probs=16.7

Q ss_pred             CCHHHHHHHHHHHHHhCChhHHHHHH
Q 010276          281 YIMTYMDEYAMLLKVKCDYSKLSKLV  306 (514)
Q Consensus       281 ~~~~~~~~l~~~~~~~~~~~~A~~~~  306 (514)
                      .++..+..+|..+++.|++.+|..++
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            34677777777777777777776655

; PDB: 3LKU_E 2WPV_G.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.00  E-value=0.1  Score=29.36  Aligned_cols=30  Identities=23%  Similarity=0.499  Sum_probs=27.6

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYY   73 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   73 (514)
                      +.+..+|.+.+..++|++|+.-|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.89  E-value=0.89  Score=47.59  Aligned_cols=158  Identities=20%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             HHHHHHHHhcCChHHHHH------HHHHhH-hhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 010276          354 IMKGNLLLSMKRPEAAVI------AFRGAQ-ELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSA  417 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~------~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~  417 (514)
                      ...|......|.+.+|.+      .+.... .+.|+. ..+..++.++...|+.++|+..-.++.-+        .|+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            445555566667776666      333222 234554 56788888888999998888887776532        24456


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC-----C
Q 010276          418 KALKLVGDVHASNASGREKAKKFYESALRL--------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA-----D  484 (514)
Q Consensus       418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~  484 (514)
                      ..+.+++...... ++...|...+.++..+        .|.......+++.++...++++.|+.+++.+.....     .
T Consensus      1016 ~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred             HHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            6677777777776 7778888888777663        233334556788888888899999999998887542     2


Q ss_pred             c----hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          485 D----SLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       485 ~----~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      .    ..+..++..+..+|++..|..+.+...
T Consensus      1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred             chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence            1    355666777777777777776665543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.87  E-value=5.9  Score=37.35  Aligned_cols=93  Identities=15%  Similarity=0.039  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      ..+..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-..++++..+.+-++...-..++..|..
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk  144 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK  144 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            344444444444444444445555555543 3445566666666655 45555666666666666666666666666666


Q ss_pred             cChhHHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIR  344 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~  344 (514)
                      ++...+..+|.+++.
T Consensus       145 ik~sk~a~~f~Ka~y  159 (711)
T COG1747         145 IKKSKAAEFFGKALY  159 (711)
T ss_pred             hchhhHHHHHHHHHH
Confidence            666666666666654

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.63  E-value=4.8  Score=35.51  Aligned_cols=142  Identities=16%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc-CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276          145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA-TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ  223 (514)
Q Consensus       145 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  223 (514)
                      +.+.+...+..+..+-++.-..+++++|....++..|++-.. ...+.+..++++.+.                    +.
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka--------------------~e  247 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKA--------------------GE  247 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHH--------------------HH
Confidence            445555667777888888889999999999999888754321 111222222222111                    11


Q ss_pred             HHHHh-cCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCh
Q 010276          224 CCIAS-NDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       224 ~~~~~-~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~  299 (514)
                      ..++. .+...--...+...+.+-+- ..+...++.|..++|+..+|++.++...+..|-.  ...+.++...+....-|
T Consensus       248 ~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY  327 (556)
T KOG3807|consen  248 TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY  327 (556)
T ss_pred             HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            11110 00000000011111111111 2344567888888888888888888877766632  12333444444444444


Q ss_pred             hHHHHHH
Q 010276          300 SKLSKLV  306 (514)
Q Consensus       300 ~~A~~~~  306 (514)
                      .+...++
T Consensus       328 ADvqavL  334 (556)
T KOG3807|consen  328 ADVQAVL  334 (556)
T ss_pred             HHHHHHH
Confidence            4444333

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=93.60  E-value=8.8  Score=38.53  Aligned_cols=283  Identities=11%  Similarity=-0.014  Sum_probs=145.3

Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH----HHHHHH--H
Q 010276          225 CIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----YMDEYA--M  291 (514)
Q Consensus       225 ~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~--~  291 (514)
                      +...++++.....|.+++..-..       ....+...-..+...-..++-+.++...+... -+.+    .+....  .
T Consensus       200 ~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h  278 (881)
T KOG0128|consen  200 AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAH  278 (881)
T ss_pred             ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcc
Confidence            34557788888888888763221       13344444555555555566777777766653 2211    111111  1


Q ss_pred             -HHHHhCChhHHHHHH-------HHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHH-H
Q 010276          292 -LLKVKCDYSKLSKLV-------HDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL-L  361 (514)
Q Consensus       292 -~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~  361 (514)
                       ......+++.+..-+       ++.+...|.....|..+...... |+...-...+++++...+.+...|...|... .
T Consensus       279 ~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~  358 (881)
T KOG0128|consen  279 VYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDT  358 (881)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccc
Confidence             112233444444333       33333333333333333333333 7777777778888888887777887776554 2


Q ss_pred             hcCChHHHHHHHHHhHhhcCChHHHHHHHHHHH-hcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------
Q 010276          362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL-QFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNA--------  431 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------  431 (514)
                      .++-.+.+...+.+++..+|-...+...+.+-+ +.+. ...-...+.+.+..    ...+.+....+....        
T Consensus       359 eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~~~~~~s~~  434 (881)
T KOG0128|consen  359 ELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRCTNIIDSQD  434 (881)
T ss_pred             ccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcccchhhh
Confidence            344455556667777777776533322222222 2221 11222223332221    111222222222211        


Q ss_pred             -----CChHHHHHHHHHHHhhC-CCChHHHHHHHHHHH-HcCChhHHHHHHHHHHhhCCCc-h-HHHHHHHHHHHhccHH
Q 010276          432 -----SGREKAKKFYESALRLE-PGYLGAALALAELHV-IEGRNGDAVSLLERYLKDWADD-S-LHVKLAQVFAATNMLQ  502 (514)
Q Consensus       432 -----~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~  502 (514)
                           ..+..|...|....... ......+-..|.++. .+++.+.++.+++..+...... . .|+....+-...|+..
T Consensus       435 ~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~  514 (881)
T KOG0128|consen  435 YSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGP  514 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCch
Confidence                 22344444444433321 111234445555554 3577888888888776655444 2 5777777777779999


Q ss_pred             HHHHHHHHHh
Q 010276          503 EALSHYEAAL  512 (514)
Q Consensus       503 ~A~~~~~~al  512 (514)
                      .+..++++|+
T Consensus       515 ~~R~~~R~ay  524 (881)
T KOG0128|consen  515 SARKVLRKAY  524 (881)
T ss_pred             hHHHHHHHHH
Confidence            9988888775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.46  E-value=0.13  Score=26.11  Aligned_cols=21  Identities=38%  Similarity=0.457  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHH
Q 010276          455 ALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~  475 (514)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            334444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.45  E-value=0.39  Score=34.15  Aligned_cols=65  Identities=17%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             HHHhhhhhhHHHhHHHHHHHhhccCCCCC-hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcc
Q 010276           10 ALIDQGLYDSAQMLGCFLVSSSAINGETS-PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK   74 (514)
Q Consensus        10 ~l~~~~~~~~a~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p   74 (514)
                      .-+..|+|..|.......+.......... ......+++.+|..+...|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34678999999888887776655444432 224456788899999999999999999999999854

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.31  E-value=0.099  Score=26.56  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHH
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQ   68 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~   68 (514)
                      .+.+.+|..+...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.20  E-value=0.62  Score=33.13  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQEL  379 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  379 (514)
                      ...+|.++...|++++|+..+++++++
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344555555555555555555555544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.12  E-value=0.63  Score=31.12  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276           43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG  122 (514)
Q Consensus        43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  122 (514)
                      +......|--++.+.+.++|+..++++++..++.+..                            ..++-.+..++...|
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~r----------------------------f~~lG~l~qA~~e~G   57 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDR----------------------------FRVLGYLIQAHMEWG   57 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHH----------------------------HHHHHHHHHHHHHHH
Confidence            4456777888899999999999999999997755432                            223345667888888


Q ss_pred             CHHHHHHHH
Q 010276          123 ETKAAIVEM  131 (514)
Q Consensus       123 ~~~~A~~~~  131 (514)
                      ++++.+...
T Consensus        58 kyr~~L~fA   66 (80)
T PF10579_consen   58 KYREMLAFA   66 (80)
T ss_pred             HHHHHHHHH
Confidence            888888654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.98  E-value=5.6  Score=34.49  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHHHHH
Q 010276          455 ALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALSHY  508 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~  508 (514)
                      ...+|..|+..|++++|.++|+.+.......       .+...+..|+...|+.++.+...
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~  241 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS  241 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3445555555555555555555554433221       34555555555555555555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.95  E-value=3  Score=38.04  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-----c-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRF--------PN-----N-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY  281 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  281 (514)
                      ..|...+++++|..|..-|..+++..        |.     +     ..+-..+..||.++++.+-|+....+.+..+|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            44666777777777777777776532        11     1     124456889999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVH  307 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~  307 (514)
                      ...-+...+.++..+.+|.+|.+-+-
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.93  E-value=1.4  Score=46.31  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhcCHHHHHH------HHHHHH-HhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCC
Q 010276          218 RYVEAQCCIASNDYKGGLE------LFAELL-QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYI  282 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~------~~~~~~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~  282 (514)
                      .+..+......|.+.+|.+      ++.... ...|.....+..++.++...|+.++|+..-.++.-+        .|+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            3455667777778887777      555333 357778888889999999999999988887766543        2333


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI  345 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~  345 (514)
                      ...+..++......++...|...+.++...        .|.......+++.++.. ++++.|+++.+.+...
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666555432        12222233344444333 5555666666655553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=6.3  Score=34.06  Aligned_cols=211  Identities=13%  Similarity=0.055  Sum_probs=113.1

Q ss_pred             HHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHH
Q 010276           47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA  126 (514)
Q Consensus        47 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  126 (514)
                      +.+|+-..+.+++++|+..|.+.+......-+.                       ...........++..|...|++..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek-----------------------~~nEqE~tvlel~~lyv~~g~~~~   63 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEK-----------------------TLNEQEATVLELFKLYVSKGDYCS   63 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhh-----------------------hhhHHHHHHHHHHHHHHhcCCcch
Confidence            667888899999999999999998762110000                       000234456788889988888876


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHhccCcc--cHhHHHhccCCc
Q 010276          127 AIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP---FFIEAITALAELGATPK--DIISLFAQTPNR  201 (514)
Q Consensus       127 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~  201 (514)
                      --+.....      .+++...     ..   .+-.+..+..++..|   ++.+-...+..-.+...  +-...+...   
T Consensus        64 l~~~i~~s------re~m~~f-----tk---~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~---  126 (421)
T COG5159          64 LGDTITSS------REAMEDF-----TK---PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLE---  126 (421)
T ss_pred             HHHHHHhh------HHHHHHh-----cc---hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            55544332      1111100     00   111222233333332   22222222211111000  000000000   


Q ss_pred             CCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276          202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  275 (514)
                                     ....++..++..|.|.+|+.....++..      .|.-..++..-..+|....+..++...+..+
T Consensus       127 ---------------Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA  191 (421)
T COG5159         127 ---------------LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA  191 (421)
T ss_pred             ---------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence                           0123467788899999999888877642      2333567777788888888877777766655


Q ss_pred             Hhh-----CCCCHHHH--HHHHHHHHHhCChhHHHHHHHHHhhc
Q 010276          276 RSI-----DPYIMTYM--DEYAMLLKVKCDYSKLSKLVHDLLSI  312 (514)
Q Consensus       276 ~~~-----~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~  312 (514)
                      -..     .|....+.  ..-|...+...+|.-|..+|-++++-
T Consensus       192 rt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         192 RTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            432     12222222  22255566667788888888777764

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.54  E-value=0.54  Score=26.14  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHH
Q 010276          454 AALALAELHVIEGRNGDAVSL  474 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~  474 (514)
                      .++.+|-.+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            445555555666666666665

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.50  E-value=1.5  Score=38.14  Aligned_cols=63  Identities=21%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS  311 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  311 (514)
                      ..++..++..+...|+++.+++.+++.+..+|.+...+..+...|...|+...|+..|+++-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            457777888888888888888888888888888888888888888888888888888887755

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.48  E-value=0.23  Score=27.96  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          487 LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       487 ~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ++..||.+-...++|++|++-|+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.33  E-value=0.65  Score=25.83  Aligned_cols=21  Identities=38%  Similarity=0.173  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHH
Q 010276          251 ILLEMAKVDAIIGKNDEAILN  271 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~  271 (514)
                      .++.+|-.+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.32  E-value=1.7  Score=35.77  Aligned_cols=125  Identities=14%  Similarity=0.021  Sum_probs=80.4

Q ss_pred             HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHH---HHHHhccCcccH
Q 010276          116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT---ALAELGATPKDI  191 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~  191 (514)
                      .-+++.+...+|+...+. +..+|.+......+-+++.-.|++++|...++-+-+..|+...-..   .+..+.      
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e------   82 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE------   82 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH------
Confidence            445678889999998877 7778999999999999999999999999999999999997644332   221211      


Q ss_pred             hHHHhccCCcCCCCCCCcC-CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276          192 ISLFAQTPNRSGRAPFDHL-DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN  248 (514)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~  248 (514)
                        ++....-..+..|.... .+..|...+..+..+...|.-+.+..+-+.+++..|..
T Consensus        83 --a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~  138 (273)
T COG4455          83 --AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP  138 (273)
T ss_pred             --HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence              11111111222232222 34556665555555555555555555566666665543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.31  E-value=1.4  Score=37.83  Aligned_cols=73  Identities=8%  Similarity=-0.033  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      ..+=..+...++++.|..+.++.+.++|.++.-+...|.+|.+.|.+.-|++.+...++..|+++.+-.....
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            3444567778888888888888888888888888888888888888888888888888888888776554443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=1.5  Score=37.65  Aligned_cols=54  Identities=20%  Similarity=0.083  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++..|++
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            455555555555555555555555555555555555555555555555555544

>PF12854 PPR_1: PPR repeat

Probab=92.20  E-value=0.35  Score=26.48  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276          380 RPDLRSYQGLVHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  408 (514)
                      .|+..+|..+...+.+.|+.++|.+.+++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35556666777777777777777776654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.16  E-value=11  Score=35.74  Aligned_cols=83  Identities=16%  Similarity=0.028  Sum_probs=62.8

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHH
Q 010276          227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLV  306 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  306 (514)
                      ..-.+.-...++.+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++.+.+...|
T Consensus        78 ~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f  154 (711)
T COG1747          78 DNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFF  154 (711)
T ss_pred             cchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHH
Confidence            3334445556677776654 3557888899999887 66777888999999888888777888888776 8888888898


Q ss_pred             HHHhhc
Q 010276          307 HDLLSI  312 (514)
Q Consensus       307 ~~~~~~  312 (514)
                      .+++..
T Consensus       155 ~Ka~yr  160 (711)
T COG1747         155 GKALYR  160 (711)
T ss_pred             HHHHHH
Confidence            888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.14  E-value=15  Score=37.19  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY   72 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   72 (514)
                      +-..+..+....+|.-|+.++..        ...++....+.+..-|..++++|+|++|...|-+.+..
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~--------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKS--------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            45677888899999999887762        33456677888999999999999999999999998865

>PF12854 PPR_1: PPR repeat

Probab=92.07  E-value=0.39  Score=26.29  Aligned_cols=29  Identities=14%  Similarity=0.155  Sum_probs=20.1

Q ss_pred             CCCchHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          482 WADDSLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       482 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      .|+...|..+...|.+.|+.++|.+.|++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35555677777777777777777777765

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=9  Score=35.11  Aligned_cols=157  Identities=16%  Similarity=0.129  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAI------------IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-  298 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  298 (514)
                      .++++.-.+++..+|+...+|...-.++..            ..-.++-+.+...+++.+|+...+|..+..++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            467777778888888876666554333322            2245667788889999999999999999999987764 


Q ss_pred             -hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh------cCC-
Q 010276          299 -YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS------MKR-  365 (514)
Q Consensus       299 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-  365 (514)
                       +..=+++.+++++.+|.+...|...-.+...     ....+-+++..+++..++.+..+|..+..++..      .|+ 
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~  205 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF  205 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence             5778899999999999998888766555444     235577889999999999999999888777652      231 


Q ss_pred             -----hHHHHHHHHHhHhhcCCh-HHHHH
Q 010276          366 -----PEAAVIAFRGAQELRPDL-RSYQG  388 (514)
Q Consensus       366 -----~~~A~~~~~~~~~~~~~~-~~~~~  388 (514)
                           ...-+..-..++-.+|++ .+|+.
T Consensus       206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  206 MPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence                 223344555666678887 44443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=91.90  E-value=11  Score=35.47  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      .-..+...+.+.|-+.+|...|.+.....|-+...+..+..+-... .-+...+..+|..++.....+++.|...-....
T Consensus       462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~  541 (568)
T KOG2396|consen  462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL  541 (568)
T ss_pred             hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence            3445566777888889999999998888887766665554443221 134677888899888877788889988888888


Q ss_pred             HcCChhHHHHHHHHHHhh
Q 010276          464 IEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~  481 (514)
                      ..|..+.+-.++.++.+.
T Consensus       542 ~~g~~en~~~~~~ra~kt  559 (568)
T KOG2396|consen  542 PLGRPENCGQIYWRAMKT  559 (568)
T ss_pred             cCCCcccccHHHHHHHHh
Confidence            889888888888888764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.76  E-value=2.4  Score=36.97  Aligned_cols=62  Identities=10%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      .++..++..+...|+++.+...+++.+..+|.+...|..+-..|... |+...|+..|++.-+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            35566677777777777777777777777777777777777777776 777777777766554

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=91.17  E-value=10  Score=33.65  Aligned_cols=184  Identities=13%  Similarity=0.029  Sum_probs=95.2

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCChhHHHHHHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCDYSKLSKLVH  307 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~  307 (514)
                      +-.++|+.+-+-+....|..|+++-.++.+.+...+...         ..+++- +..+...-...+..+-.+++...+.
T Consensus       210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~  280 (415)
T COG4941         210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLD  280 (415)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHH
Confidence            345677777777778888888888777776665432211         111110 1111111122334445566677777


Q ss_pred             HHhhcCCCCh-HHHHHHHHHHhh------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276          308 DLLSIDPSRP-EVFVALSVLWER------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       308 ~~~~~~~~~~-~~~~~l~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  380 (514)
                      +++.....-| ...-.++.++..      -++..-..+|+-.....|+ |.+-.+.+....+..-.+.++...+......
T Consensus       281 rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~  359 (415)
T COG4941         281 RALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARP  359 (415)
T ss_pred             HHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence            7765443222 222233333332      3344444445544445554 5555566666655555666665555443321


Q ss_pred             --CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          381 --PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       381 --~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                        ..+ ..+...|..+.+.|+.++|...|++++.+.++..+..+.
T Consensus       360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l  404 (415)
T COG4941         360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL  404 (415)
T ss_pred             ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence              111 334555666666777777777777776666655444333

>PF13041 PPR_2: PPR repeat family

Probab=91.13  E-value=1.1  Score=27.21  Aligned_cols=43  Identities=16%  Similarity=0.019  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--CCchHHHHHHHH
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDW--ADDSLHVKLAQV  494 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~  494 (514)
                      ...|..+-..+.+.|++++|.++|++..+..  |+...+..+-..
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~   47 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING   47 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4567777788888888888888888887754  444455444433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=91.09  E-value=7.1  Score=36.38  Aligned_cols=61  Identities=20%  Similarity=0.182  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--HHHH--HHHHHHHhCChHHHHHHHHHHHhh
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIH--ILLE--MAKVDAIIGKNDEAILNFEKVRSI  278 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~~~~  278 (514)
                      .+..+..++..++|..|.+.++.+...-|.+..  .+..  .|..++..-++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            356688889999999999999999886454433  3333  355567788899999999988765

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.06  E-value=9.2  Score=32.82  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhh--cChhHHHHHHHHHHH
Q 010276          286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER--KDERGALSYAEKSIR  344 (514)
Q Consensus       286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~A~~~~~~~~~  344 (514)
                      +..++.+..+.|++++...++++++..+|.- .+-...+..+|..  |....+...+.....
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~   65 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ   65 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence            3445666666666666666666666654432 2333344444443  444444444444433

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.74  E-value=23  Score=36.75  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQAL   70 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al   70 (514)
                      +-.++..++....|+.++.+++....   .++..............|-.++.+|+|++|...|.+..
T Consensus       310 ~~~qi~~lL~~k~fe~ai~L~e~~~~---~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~  373 (877)
T KOG2063|consen  310 FEKQIQDLLQEKSFEEAISLAEILDS---PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE  373 (877)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            45688899999999999998775533   01111111111122222677999999999999999853

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=90.74  E-value=6.4  Score=30.45  Aligned_cols=48  Identities=13%  Similarity=0.249  Sum_probs=26.0

Q ss_pred             HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276          293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE  340 (514)
Q Consensus       293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~  340 (514)
                      +...+.......+++.++..++.++..+..+..++..-+..+.+..+.
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~   64 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLD   64 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHH
Confidence            334456666666666666655555555555555555444444444443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.68  E-value=2.6  Score=28.32  Aligned_cols=32  Identities=13%  Similarity=0.041  Sum_probs=15.4

Q ss_pred             HHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      +..++.++|+..++++++..++.++.+..+|.
T Consensus        17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~   48 (80)
T PF10579_consen   17 YHQNETQQALQKWRKALEKITDREDRFRVLGY   48 (80)
T ss_pred             hccchHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            34444455555555555554444444444443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13041 PPR_2: PPR repeat family

Probab=90.42  E-value=2.1  Score=25.85  Aligned_cols=27  Identities=33%  Similarity=0.475  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      +|..+...+.+.|++++|.++|+++.+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            344444444444444444444444443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=90.26  E-value=13  Score=33.18  Aligned_cols=282  Identities=12%  Similarity=0.067  Sum_probs=144.9

Q ss_pred             HHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276           46 LIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE  123 (514)
Q Consensus        46 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  123 (514)
                      ....++......++++++..|.+.+..  .|.+.+....                       ........++..+...|+
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~-----------------------~kE~~Ilel~~ll~~~~~   63 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIK-----------------------EKEQSILELGDLLAKEGD   63 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHH-----------------------HHHHHHHHHHHHHHhccc
Confidence            366677777888899999999998874  1211111000                       124456788999999999


Q ss_pred             HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCCHHHHHHHHHhccC--cccHhHHHhcc
Q 010276          124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC---PFFIEAITALAELGAT--PKDIISLFAQT  198 (514)
Q Consensus       124 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~--~~~~~~~~~~~  198 (514)
                      .++-...++.+..      .+...+.        .+|.+..+..++..   |+.......+..-++.  ..+-...+.+.
T Consensus        64 ~~~lr~li~~~Rp------f~~~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~  129 (411)
T KOG1463|consen   64 AEELRDLITSLRP------FLSSVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQS  129 (411)
T ss_pred             hhHHHHHHHHHHH------HHHHhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9888777765411      1111111        12222333332222   1222211111111100  00000011100


Q ss_pred             CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC--CcHHHHHHHHHHHHHhCChHHHHHHH
Q 010276          199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR----FP--NNIHILLEMAKVDAIIGKNDEAILNF  272 (514)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p--~~~~~~~~la~~~~~~~~~~~A~~~~  272 (514)
                                        ..-.++..|+..++|.+|+.....++..    +.  .-.+++..-..+|+...+..+|...+
T Consensus       130 ------------------Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasL  191 (411)
T KOG1463|consen  130 ------------------LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASL  191 (411)
T ss_pred             ------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHH
Confidence                              0113367788889999999888877652    21  12456666778888888888888777


Q ss_pred             HHHHhhC-----CCCHH--HHHHHHHHHHHhCChhHHHHHHHHHhhcCC---CChHHHHHHHHHHhh----cChhH--HH
Q 010276          273 EKVRSID-----PYIMT--YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP---SRPEVFVALSVLWER----KDERG--AL  336 (514)
Q Consensus       273 ~~~~~~~-----~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~----~~~~~--A~  336 (514)
                      ..+-...     |....  .-..-|.++....+|.-|..+|-++++-..   ++..+...+-.....    +..++  ++
T Consensus       192 TsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~l  271 (411)
T KOG1463|consen  192 TSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAAL  271 (411)
T ss_pred             HHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7664431     11111  112235555666778888888777776321   223444333322211    44432  22


Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHh--cCChHHHHHHHHHhHhhcCC
Q 010276          337 SYAEKSIRIDERHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRPD  382 (514)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~  382 (514)
                      -.-..+++....+.++....+..+.+  +.+|+.|+..|..-+..+|-
T Consensus       272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            22233444444445555555555543  23566666666655554443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=89.85  E-value=12  Score=35.44  Aligned_cols=27  Identities=26%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             HHHHH-HHHHHHhccHHHHHHHHHHHhc
Q 010276          487 LHVKL-AQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       487 ~~~~l-~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .|..| |.-|.+.|+...|..+|.+|+.
T Consensus       371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~  398 (414)
T PF12739_consen  371 FHMVLAGHRYSKAGQKKHALRCYKQALQ  398 (414)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34444 6778888888888888888764

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.74  E-value=14  Score=32.78  Aligned_cols=192  Identities=13%  Similarity=0.019  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH-HHhhcC
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV-LWERKD  331 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~  331 (514)
                      +.+.+..++..+..+-++.-..+++++|....++..++.-  ...-..+|.++++++++....    .+...+ +...|.
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~  261 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP  261 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc
Confidence            3445555666667777777777777777777666665542  122345566666666553211    111111 111121


Q ss_pred             hhHHHHHHHHHHHhcccCch--hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          332 ERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      ..+|.      .+. ..+..  +-..++.+..++|+..+|++.++...+..|-.   ...-++...+....-|.+....+
T Consensus       262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111      111 11222  23468888899999999999999888777743   34455666655555454444443


Q ss_pred             HHHHhh-CCCCHHHHHHHHHHH-------------HhcCCC---hHHHHHHHHHHHhhCCCChHHHHHH
Q 010276          407 REAMKA-MPQSAKALKLVGDVH-------------ASNASG---REKAKKFYESALRLEPGYLGAALAL  458 (514)
Q Consensus       407 ~~~~~~-~p~~~~~~~~l~~~~-------------~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l  458 (514)
                      -+.-++ .|.+...-+.-+..-             .+. |-   -..|++...++++.+|.-|..+..+
T Consensus       335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrR-GLS~AE~~AvEAihRAvEFNPHVPkYLLE~  402 (556)
T KOG3807|consen  335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRR-GLSTAEINAVEAIHRAVEFNPHVPKYLLEM  402 (556)
T ss_pred             HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhc-cccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence            333222 133332222211111             111 11   1356777888888888876655443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.58  E-value=0.81  Score=42.17  Aligned_cols=59  Identities=19%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCCCC---------CccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276          111 KYKIASCHFALGETKAAIVEMEGIPSK---------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLR  169 (514)
Q Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  169 (514)
                      ...+.+++.-+|+|..|++.++.+...         +-....++..|-+|+..++|.+|++.|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778889999999999999987332         23556779999999999999999999999873

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.44  E-value=0.9  Score=26.63  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          455 ALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      .+.||..|..+|+.+.|.+.++.++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            357899999999999999999998853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.20  E-value=1  Score=23.96  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             CChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276          155 RHNRGAVACYKECLRHCPFFIEAITALAEL  184 (514)
Q Consensus       155 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  184 (514)
                      |+.+.|...|++++...|.+...|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567899999999999999999999877543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PRK12798 chemotaxis protein; Reviewed

Probab=88.74  E-value=20  Score=33.24  Aligned_cols=90  Identities=9%  Similarity=0.086  Sum_probs=49.7

Q ss_pred             hhhhhhccccCCCCccc-ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHH-HHHhcCChhh
Q 010276           84 SRSSLSTSNRSSSPNSF-NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAK-LYRNSRHNRG  159 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~  159 (514)
                      +.+|..+|+-+.....+ ......+.+....-|..-+-.|+-.++.+.+..+...  |.....+..|.. ......+..+
T Consensus        87 a~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~  166 (421)
T PRK12798         87 ALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPAT  166 (421)
T ss_pred             HHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHH
Confidence            44555555554444433 2222234455555555555677777777777776333  444444444433 2334556777


Q ss_pred             HHHHHHHHHhcCCC
Q 010276          160 AVACYKECLRHCPF  173 (514)
Q Consensus       160 A~~~~~~~l~~~p~  173 (514)
                      |+..|+.+-=..|.
T Consensus       167 Al~~lD~aRLlaPG  180 (421)
T PRK12798        167 ALKLLDQARLLAPG  180 (421)
T ss_pred             HHHHHHHHHHhCCc
Confidence            77777777666664

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.44  E-value=0.87  Score=26.70  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          488 HVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       488 ~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      .+.+|..|..+|+.+.|.+.++.++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36789999999999999999998763

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.21  E-value=12  Score=32.99  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--c------cHHHHHHHHHHHHhcCChhhHHHHHHHHH--hcCCCCHHH
Q 010276          108 NEVKYKIASCHFALGETKAAIVEMEGIPSKA--R------NLQMSLLMAKLYRNSRHNRGAVACYKECL--RHCPFFIEA  177 (514)
Q Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~  177 (514)
                      ..++..+|.+|.+.++++.|-..+..++...  .      ....+..+|++|...++..+|..+..++-  ..+..|...
T Consensus       103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L  182 (399)
T KOG1497|consen  103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL  182 (399)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence            4467899999999999999999999986542  1      12345778999999999999998887753  223344444


Q ss_pred             HHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276          178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ  243 (514)
Q Consensus       178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  243 (514)
                      ...+--|                                    .|+++-..++|-+|...|.++..
T Consensus       183 qie~kvc------------------------------------~ARvlD~krkFlEAAqrYyels~  212 (399)
T KOG1497|consen  183 QIEYKVC------------------------------------YARVLDYKRKFLEAAQRYYELSQ  212 (399)
T ss_pred             HHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433222                                    27777777888888777776643

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.13  E-value=1.8  Score=22.94  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      .+.+...|++++...|.++.+|..
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~   26 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLK   26 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHH
Confidence            344444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.12  E-value=19  Score=32.18  Aligned_cols=86  Identities=12%  Similarity=0.004  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276          366 PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      |..-..+|.-.....|+..+-.+.+.......-.+.++...+.....  -......+...|..+.+. |+.++|...|++
T Consensus       312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rL-gr~~eAr~aydr  390 (415)
T COG4941         312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARL-GRVEEARAAYDR  390 (415)
T ss_pred             hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHh-CChHHHHHHHHH
Confidence            44444444444444444433333333333333333444433333322  112223334444444444 444555555555


Q ss_pred             HHhhCCCCh
Q 010276          444 ALRLEPGYL  452 (514)
Q Consensus       444 a~~~~~~~~  452 (514)
                      ++.+.++..
T Consensus       391 Ai~La~~~a  399 (415)
T COG4941         391 AIALARNAA  399 (415)
T ss_pred             HHHhcCChH
Confidence            544444433

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.66  E-value=17  Score=31.21  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=15.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHhhcCC
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQELRPD  382 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  382 (514)
                      ..++.+....|+|++.+.++++++..+|+
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e   33 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE   33 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence            34455555556666666666665555544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.31  E-value=4  Score=40.29  Aligned_cols=114  Identities=19%  Similarity=0.157  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------HHHHHHHHHHhh----cChhHHHHHHHHHHHh-cccCch
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------EVFVALSVLWER----KDERGALSYAEKSIRI-DERHIP  351 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~A~~~~~~~~~~-~~~~~~  351 (514)
                      ++....+-..|....+|+.-+++.+.+-.+ |+..      .+.+..+-.+.+    |+-++|+...-.+++. .|-.++
T Consensus       201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD  279 (1226)
T KOG4279|consen  201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD  279 (1226)
T ss_pred             HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence            445555555666666666666655544332 2211      111111212222    6666777666666654 334455


Q ss_pred             hHHHHHHHHHh---------cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC
Q 010276          352 GYIMKGNLLLS---------MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS  397 (514)
Q Consensus       352 ~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (514)
                      .+...|.+|..         .+..+.|+..|+++++..|...+-.+++.++...|
T Consensus       280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG  334 (1226)
T KOG4279|consen  280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG  334 (1226)
T ss_pred             eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence            55555555532         34456677777777777776655455555555444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.91  E-value=6.9  Score=33.93  Aligned_cols=84  Identities=14%  Similarity=-0.023  Sum_probs=62.3

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 010276          395 QFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELH  462 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~  462 (514)
                      ........++.+.++.......      ..+...+|..|... |++++|.++|+.+.......      ..+...+..|.
T Consensus       150 ~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca  228 (247)
T PF11817_consen  150 GVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA  228 (247)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3445567788889888765432      34557899999998 99999999999997653322      34677788899


Q ss_pred             HHcCChhHHHHHHHHHH
Q 010276          463 VIEGRNGDAVSLLERYL  479 (514)
Q Consensus       463 ~~~g~~~~A~~~~~~~~  479 (514)
                      ...|+.+..+.+.-+.+
T Consensus       229 ~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  229 KRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHhCCHHHHHHHHHHHh
Confidence            99999988877665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.85  E-value=2.9  Score=37.06  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=36.7

Q ss_pred             HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                      |..+|.+|..+.|+. ..|+.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            456667777777766 6667777777666776666666666665443335566666655554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.84  E-value=3.6  Score=35.66  Aligned_cols=58  Identities=21%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276          252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL  309 (514)
Q Consensus       252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  309 (514)
                      +...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+.+.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3444566667777777777777777777777777777777777777766666655544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=86.11  E-value=14  Score=28.57  Aligned_cols=37  Identities=11%  Similarity=-0.041  Sum_probs=21.4

Q ss_pred             HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       260 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      ...+.....+.+++.++..++.++.....+..++...
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            3445566666666666666555555555555555543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.80  E-value=21  Score=33.32  Aligned_cols=58  Identities=19%  Similarity=0.067  Sum_probs=32.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-H--HHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R--SYQGL--VHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~--~~~~l--~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      ...+..++..++|..|...++.....-|.. .  .+..+  |..+...-++.+|.+.++..+.
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345555667777777777777766642222 2  23333  3333455566666666666554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.40  E-value=7.4  Score=32.29  Aligned_cols=62  Identities=10%  Similarity=0.135  Sum_probs=54.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM  283 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  283 (514)
                      ...+++.+...+++...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|+..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            44567788999999999999999999988888889999999999999999999999988763

>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8)

Probab=85.18  E-value=2.9  Score=32.38  Aligned_cols=67  Identities=28%  Similarity=0.366  Sum_probs=50.5

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCC--------------CCC---h-----hhhHHHHHHHHhhHhhhhhHHH
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAING--------------ETS---P-----HLKAENLIILGDSLFRDREYRR   61 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~--------------~~~---~-----~~~~~~~~~~g~~~~~~g~~~~   61 (514)
                      +...+..+-..|++.++.+.+++|..++....              ...   +     ...-...+.+|..||..++|++
T Consensus        13 L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy~R   92 (142)
T PF04049_consen   13 LRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEYDR   92 (142)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHHHH
Confidence            55667788899999999999999988872111              000   0     1122467889999999999999


Q ss_pred             HHHHHHHHH
Q 010276           62 AIHTYKQAL   70 (514)
Q Consensus        62 A~~~~~~al   70 (514)
                      |..+++...
T Consensus        93 aA~~L~~~~  101 (142)
T PF04049_consen   93 AAHVLKDCK  101 (142)
T ss_pred             HHHHHccCC
Confidence            999998865

This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.01  E-value=5.5  Score=34.58  Aligned_cols=55  Identities=22%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      .+..|... |.+.+|+.+.++++.++|-+...+..+-.++...|+--.|.+.|++.
T Consensus       285 va~~yle~-g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         285 VARAYLEA-GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHc-CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34444444 55555555555555555555555555555555555555555554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.85  E-value=11  Score=36.43  Aligned_cols=50  Identities=10%  Similarity=-0.021  Sum_probs=41.5

Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276          116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR  169 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  169 (514)
                      .+.++.|+++.|.++..+.    ++..-|-.||.+....|++..|.++|.++-.
T Consensus       645 elal~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3445789999998887654    5677899999999999999999999998754

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.58  E-value=48  Score=33.47  Aligned_cols=150  Identities=16%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH---Hhh--
Q 010276          255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL---WER--  329 (514)
Q Consensus       255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---~~~--  329 (514)
                      .-.++.-.|+++.|+.++-+    .+.+..--.-+|.++...|-.......-...+...+.++.. .+++.+   |..  
T Consensus       264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F  338 (613)
T PF04097_consen  264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF  338 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence            34677788999999998877    22222212223333333333322222224555555554332 333332   222  


Q ss_pred             --cChhHHHHHHHHHHHhc-ccCch-hHHHHHHHHHhcCC--------------hHHHHHHHHHhHhhcCCh----HHHH
Q 010276          330 --KDERGALSYAEKSIRID-ERHIP-GYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPDL----RSYQ  387 (514)
Q Consensus       330 --~~~~~A~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~----~~~~  387 (514)
                        .+..+|++++--+-... |.... .+..+..+....++              ....++-..+.+......    ....
T Consensus       339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~  418 (613)
T PF04097_consen  339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE  418 (613)
T ss_dssp             TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence              56667777765432221 11111 11222222222222              222233323333333221    2345


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 010276          388 GLVHSYLQFSKVKEALYAAREA  409 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~  409 (514)
                      ..|.-....|++++|+.+|.-+
T Consensus       419 ~~A~~~e~~g~~~dAi~Ly~La  440 (613)
T PF04097_consen  419 QAAREAEERGRFEDAILLYHLA  440 (613)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            5566667777777777776644

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.87  E-value=38  Score=31.71  Aligned_cols=58  Identities=12%  Similarity=0.089  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhH-------hhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQ-------ELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      ..+.+++.-.|+|..|++.++..-       ..-|..  ..++.+|-+|..+++|.+|+..|..++-
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777788888877765431       111221  3577788888888888888888877664

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=83.32  E-value=2.3  Score=22.13  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=13.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      |..+...|.+.|++++|...+++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3444555555555555555555543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.90  E-value=6  Score=35.05  Aligned_cols=61  Identities=10%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK  294 (514)
Q Consensus       234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (514)
                      |..+|.++....|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~   61 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE   61 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555554432222334444444333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.59  E-value=61  Score=33.14  Aligned_cols=204  Identities=13%  Similarity=0.033  Sum_probs=102.1

Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHhccCcccHhH
Q 010276          116 SCHFALGETKAAIVEMEGIPSKAR-NLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIIS  193 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~  193 (514)
                      ..+.+..-|+-|+.+.+.-...+. ....+...|..++..|++++|...|-+.+.. +|... ...     +.....+.+
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-i~k-----fLdaq~Ikn  415 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-IKK-----FLDAQRIKN  415 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-HHH-----hcCHHHHHH
Confidence            445567778999999887544433 4556677899999999999999999998854 33211 110     011111111


Q ss_pred             HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhCChHHHHHH
Q 010276          194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHI--LLEMAKVDAIIGKNDEAILN  271 (514)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~  271 (514)
                      ....+..+.....   ...++.   .++-.+|.+.++.++-.+..+    ..+.....  .-..-.++.+.+-.++|.-.
T Consensus       416 Lt~YLe~L~~~gl---a~~dht---tlLLncYiKlkd~~kL~efI~----~~~~g~~~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  416 LTSYLEALHKKGL---ANSDHT---TLLLNCYIKLKDVEKLTEFIS----KCDKGEWFFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHHccc---ccchhH---HHHHHHHHHhcchHHHHHHHh----cCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence            1111111110000   001111   123455666666555433333    22211000  01112233333444444333


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhhcChhHHHHHHHHHHHh
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWERKDERGALSYAEKSIRI  345 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~A~~~~~~~~~~  345 (514)
                      -.+.-    .+..   .+-.++...+++++|++++..+   .|.. .......|..+....+++-...+-+.+..
T Consensus       486 A~k~~----~he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~  550 (933)
T KOG2114|consen  486 ATKFK----KHEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEHDPEETMKILIELITE  550 (933)
T ss_pred             HHHhc----cCHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence            32221    1221   2334566788999999887653   2222 23445567777777777777777666653

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=81.27  E-value=45  Score=30.79  Aligned_cols=98  Identities=11%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh-----CC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHHh--hCCC--CHHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQR-----FP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPY--IMTYMDE  288 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~~~~  288 (514)
                      +....++-..|+...-...+...+..     +. ........+-+.|...+.|+.|.....+..-  ...+  ....++.
T Consensus       173 fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY  252 (493)
T KOG2581|consen  173 FYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYY  252 (493)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHH
Confidence            33455555556655555555444431     11 1133445556666667777777666665531  1111  1345566


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSR  316 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~  316 (514)
                      +|.+..-+++|..|.+++-+++...|.+
T Consensus       253 ~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  253 LGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            6777777777777777777777777764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=80.67  E-value=3  Score=21.71  Aligned_cols=26  Identities=12%  Similarity=0.042  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276          144 SLLMAKLYRNSRHNRGAVACYKECLR  169 (514)
Q Consensus       144 ~~~l~~~~~~~g~~~~A~~~~~~~l~  169 (514)
                      |..+-..|.+.|++++|.+.|++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            45556667777777777777776654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=80.60  E-value=54  Score=31.21  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNN  248 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~  248 (514)
                      ..+|...+..|+|+-|...|+.+.+...++
T Consensus       212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D  241 (414)
T PF12739_consen  212 RRLADLAFMLRDYELAYSTYRLLKKDFKND  241 (414)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence            456999999999999999999988755433

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=80.52  E-value=5.3  Score=21.44  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=18.4

Q ss_pred             ChhHHHHHHHHHHhhCCCchHHHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADDSLHVKLAQ  493 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~~~~~~l~~  493 (514)
                      .++.|..+|++.+...|+...|...|.
T Consensus         2 E~dRAR~IyeR~v~~hp~~k~WikyAk   28 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPEVKNWIKYAK   28 (32)
T ss_pred             hHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            456777777777777777666666554

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
3ffl_A	167	Crystal Structure Of The N-Terminal Domain Of Anaph		4e-11
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		7e-07

>pdb|3FFL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Anaphase-Promoting Complex Subunit 7 Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 38  SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQXXXXXXXXXXXXXXXXXX 97
           SP  K + L+   DSLF D+EYR A+  Y  ALQ  K + K                   
Sbjct: 58  SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQC 117
Query: 98  XXXXXXAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152
                   +E EVKYK+A C+  L + K AI  ++GIPS+ R  ++++L+A LY+
Sbjct: 118 LP------SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 7/206 (3%)
Query: 315 SRPEVFVALSVLWERKDERG----ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
           ++P   VA S L    + +G    A+ + EK++ +D   +  YI  GN+L   +  + AV
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 371 IAFRGAQELRPDLRSYQG-LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429
            A+  A  L P+     G L   Y +   +  A+   R A++  P    A   + +    
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 430 NASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWAD-DSLH 488
             S  E A+  Y +ALRL P +             +G   +AV L  + L+ + +  + H
Sbjct: 284 KGSVAE-AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
             LA V      LQEAL HY+ A+R+
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRI 368

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	7e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-14
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-13
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-04

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Length = 167

 Score =  143 bits (362), Expect = 7e-41
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 7/148 (4%)

Query: 6   EQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIH 64
           + +  +   GL+ + ++L   L++ S  N E  SP  K + L+   DSLF D+EYR A+ 
Sbjct: 25  DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVS 84

Query: 65  TYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124
            Y  ALQ  K + K +     +  S S   S          +E EVKYK+A C+  L + 
Sbjct: 85  KYTMALQQKKALSKTSKVRPSTGNSASTPQSQC------LPSEIEVKYKLAECYTVLKQD 138

Query: 125 KAAIVEMEGIPSKARNLQMSLLMAKLYR 152
           K AI  ++GIPS+ R  ++++L+A LY+
Sbjct: 139 KDAIAILDGIPSRQRTPKINMLLANLYK 166

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  138 bits (350), Expect = 2e-35
 Identities = 82/526 (15%), Positives = 159/526 (30%), Gaps = 50/526 (9%)

Query: 5   KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIH 64
           +      + Q  Y  A  +G  ++  +             +   L        +Y RA  
Sbjct: 88  RLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKC 138

Query: 65  TYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA-----SCHF 119
              +   Y +                    SS   +  +        ++ A       + 
Sbjct: 139 LLTKEDLYNR--------------------SSACRYLAAFCLVKLYDWQGALNLLGETNP 178

Query: 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT 179
              + K A   +           M  L  ++Y N  +   A  CYKE L       EA  
Sbjct: 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238

Query: 180 ALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239
            L        D         N S    +   D++     Y+      +  D     E + 
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYS---TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295

Query: 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
             +     +  +LL  A    +  +  + +    K+  IDPY +     +   L    + 
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355

Query: 300 SKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGN 358
           +KL  + +DL+   P +   ++A+            A  Y  KS  +D +  P +I   +
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415

Query: 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417
                   + A+ A+  A  L       Y  L   ++Q   +  A    + +        
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475

Query: 418 KALKLVGDVHASNASGR-EKAKKFYESALRLE-------PGYLGAALALAELHVIEGRNG 469
             L  +G V  +      + A   +++AL L          +      L   +       
Sbjct: 476 LLLNELGVVAFNK--SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533

Query: 470 DAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRL 514
            A+  L + L    +D ++H  +A V+    +   A++H   +L +
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 61/453 (13%), Positives = 123/453 (27%), Gaps = 91/453 (20%)

Query: 41  LKAENLIILGDSLFRDREYRRAIHTYKQALQYY-KIVPKQNSTSSRSSLSTSNRSSSPNS 99
           L+A    + G        + RA   YK+AL    K     +   S   L+          
Sbjct: 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257

Query: 100 FNVSAINENEVKY------KIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN 153
            N S  ++ +  +         +      E + A   +  I    ++  + L  A     
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317

Query: 154 SRHNRGAVACYKECLRHCPFFIEA----ITALAELGATPKDIISLFAQTPNRSGRAPFDH 209
                  +A   + L   P+ ++     + +L E G                        
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG------------------------ 353

Query: 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269
                      +               +  +L+ R P      L +      + K  EA 
Sbjct: 354 --------EKNKL------------YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 270 LNFEKVRSIDP-YIMTY---------MDEY--AMLLKVKCDYSKLSKLVHDLLSIDPSRP 317
             F K  ++DP +   +           E+  A+       Y+           +     
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS-----AYTTA-------ARLFQGTH 441

Query: 318 EVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376
             ++ L +   +      A  Y + S  + +         G +  +    + A+  F+ A
Sbjct: 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501

Query: 377 QELRPDLRS--------YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
             L    +S        +  L H+Y +      A+ A  + +      A     +  V+ 
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561

Query: 429 SNASGR-EKAKKFYESALRLEPGYLGAALALAE 460
                    A      +L + P  + A+  L  
Sbjct: 562 H--KKIPGLAITHLHESLAISPNEIMASDLLKR 592

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  115 bits (289), Expect = 1e-28
 Identities = 46/293 (15%), Positives = 102/293 (34%), Gaps = 16/293 (5%)

Query: 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295
            +  E +     N+ +++ +A+                 V   DP+  + +  +   L  
Sbjct: 9   TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDER--GALSYAEKSIRIDERHIPGY 353
               ++L  L H L+ + PS P  + A+   +     +   A  Y  K+  +++ + P +
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128

Query: 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412
           I  G+        + A+ A+  A +L          +   Y   +  K A     +A+  
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALA---------LAELH 462
            P+    +  VG V   N  G  + A+K++  AL                     L  + 
Sbjct: 189 APEDPFVMHEVGVVAFQN--GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246

Query: 463 VIEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
               +  +A+    + L     ++  +  +  + +     + A+ ++  AL L
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 49/325 (15%), Positives = 87/325 (26%), Gaps = 48/325 (14%)

Query: 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEA----ITAL 181
           +  V  E +     NL + + +A+ +  +   +         +   PF        I  L
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 182 AELGATPK---------DIISLFAQTPNRSGRAPFDHLDSSRWLH--------------- 217
            EL    +         D+      +    G             +               
Sbjct: 67  VELNKANELFYLSHKLVDLYPSNPVSWFAVGCY----YLMVGHKNEHARRYLSKATTLEK 122

Query: 218 RYVEA-----QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272
            Y  A           +++   +  +    Q        +L +     +   +  A   F
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182

Query: 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL--------- 323
            +  SI P     M E  ++     ++    K   D L    +                 
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242

Query: 324 -SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382
             V  + K    AL Y  +++ +  ++   Y   G +   M   E AV  F  A  LR D
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 383 L-RSYQGLVHSYLQFSKVKEALYAA 406
              S   L H    +    EA   A
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAYIGA 327

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 91.4 bits (228), Expect = 3e-20
 Identities = 54/292 (18%), Positives = 111/292 (38%), Gaps = 10/292 (3%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
            D++       +L ++ P+N  +LL ++ +     + D +          +P +      
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDE 347
              + K +    +  +     L + P   + ++ L + L    D  GA+     +++ + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
                    GNLL ++ R E A   +  A E +P+   ++  L   +    ++  A++  
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
            +A+   P    A   +G+V     +   ++A   Y  AL L P +      LA ++  +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250

Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           G    A+    R ++    + D   +  LA        + EA   Y  ALRL
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPD--AYCNLANALKEKGSVAEAEDCYNTALRL 300

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 54/302 (17%), Positives = 95/302 (31%), Gaps = 16/302 (5%)

Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
           +                   +++ P        +  V    G+  EAI ++     + P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP- 98

Query: 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALS 337
              ++D Y  L         +   V      L  +P    V   L ++L        A +
Sbjct: 99  --DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156

Query: 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396
              K+I         +   G +  +      A+  F  A  L P+   +Y  L +   + 
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216

Query: 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAA 455
                A+ A   A+   P  A     +  V+     G  + A   Y  A+ L+P +  A 
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYY--EQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 456 LALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
             LA     +G   +A       L+     AD      LA +      ++EA+  Y  AL
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKAL 332

Query: 513 RL 514
            +
Sbjct: 333 EV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 85.7 bits (213), Expect = 3e-18
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 10/292 (3%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
              +  +E +   L+  P+ I   + +A      G  + A+  +      +P +     +
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDE 347
              LLK      +        +   P+    +  L  V   + +   A+ + EK++ +D 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
             +  YI  GN+L   +  + AV A+  A  L P+    +  L   Y +   +  A+   
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
           R A++  P    A   + +       G   +A+  Y +ALRL P +  +   LA +   +
Sbjct: 261 RRAIELQPHFPDAYCNLANAL--KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           G   +AV L  + L+   ++A    H  LA V      LQEAL HY+ A+R+
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 71/430 (16%), Positives = 138/430 (32%), Gaps = 65/430 (15%)

Query: 49  LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINEN 108
           L    ++  ++  A     Q  +                         P++         
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQE-----------------------PDNT-------- 33

Query: 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYRNSRHNRGAVACYKEC 167
            V   ++S HF       +         +   L  +   +  +Y+     + A+  Y+  
Sbjct: 34  GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93

Query: 168 LRHCPFFIEAI----TALAELGATPKDIISLFAQT----PNRSGRAPFDHLDSSRWLHRY 219
           LR  P FI+       AL   G   +  +  +       P+                   
Sbjct: 94  LRLKPDFIDGYINLAAALVAAGD-MEGAVQAYVSALQYNPD----------LYCVRSDL- 141

Query: 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279
                  A    +     + + ++  PN       +  V    G+   AI +FEK  ++D
Sbjct: 142 --GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 280 P-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALS 337
           P ++  Y++    +LK    + +        LS+ P+   V   L  V +E+     A+ 
Sbjct: 200 PNFLDAYIN-LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396
              ++I +       Y    N L        A   +  A  L P    S   L +   + 
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA- 454
             ++EA+   R+A++  P+ A A   +  V      G+ ++A   Y+ A+R+ P +  A 
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTFADAY 376

Query: 455 ---ALALAEL 461
                 L E+
Sbjct: 377 SNMGNTLKEM 386

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 91.3 bits (227), Expect = 9e-20
 Identities = 72/505 (14%), Positives = 160/505 (31%), Gaps = 71/505 (14%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
           A  L   G+  F  + +  AI  Y+ A++                         PN    
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----------------------PNEP-- 59

Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA-----RNLQMSLLMAKLYRNSRHN 157
                      I++C+ + G+ +  I        KA      + +  L  A    +  + 
Sbjct: 60  ------VFYSNISACYISTGDLEKVIEFTT----KALEIKPDHSKALLRRASANESLGNF 109

Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISL---FAQTPNRSGRAPFDHLDSSR 214
             A+        +  F   +I  + E     + +  L    ++   R  +    +   + 
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169

Query: 215 WLHRYVEA---QCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVDAIIGKNDEAI 269
           +   +           S++Y     L ++ LQR  +      L+    +          +
Sbjct: 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWE 328
                   +       +    +   +K +      L+ + +++ P  P  ++ L   L +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLAD 288

Query: 329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ 387
           +++ +    + +K++ ++  + P Y  +G +   ++  + A   F+ AQ L P+    Y 
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348

Query: 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALR 446
            L     +  K  E+     E     P   +      ++      G  + A K Y+ A R
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--GDFDTAIKQYDIAKR 406

Query: 447 LEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK-----------DWADDSLHV 489
           LE         +G  +  A +   +          E++             D   +   +
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466

Query: 490 KLAQVFAATNMLQEALSHYEAALRL 514
            LAQ+      + EA+  +E +  L
Sbjct: 467 GLAQLKLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 61/309 (19%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK-------CDYSKLSKLVHDLLSIDPS 315
           G +     +  +++ + P   +    YA+ LK +        ++++  K     + +DP+
Sbjct: 1   GSHMNGEPDIAQLKGLSP---SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57

Query: 316 RPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374
            P  +  +S  +    +    + +  K++ I   H    + + +   S+     A+    
Sbjct: 58  EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

Query: 375 GAQELRPDLRSYQGLVHSYL--------------------------QFSKVKEALYAARE 408
               L  D                                        + +         
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 409 AMK----------------------AMPQSAKALKLVGDVHASNASGR-EKAKKFYESAL 445
            ++                       +  +     LV +   + ++              
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEAL 505
            L      A       H ++    DA  LL+  +      + ++ LA   A     QE  
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFF 296

Query: 506 SHYEAALRL 514
             ++ A+ L
Sbjct: 297 KFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 66/442 (14%), Positives = 133/442 (30%), Gaps = 49/442 (11%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
           ++ L+    +      +  A+                       +L+         + + 
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 103 SAINENEVKYKIASCHFALGETKAAIV-----------EMEGIPSKARNLQMSLLMAKLY 151
                ++V     S     G   + +                + S A     S       
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 152 RNSRHNRGAVACYKECLRHCPFFIE----AITALAELGATPKDIISLFAQTPNRSGRAPF 207
             +     +   Y   L            A  AL   G      I  F +  N    A  
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG------IFHFLK--NNLLDA-Q 263

Query: 208 DHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAII 262
             L  S  LH    +   +A       + +   + F + +   P          ++  I+
Sbjct: 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323

Query: 263 GKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321
                A  +F+K +S++P  +  Y+   A LL  +  +++     ++     P+ PEV  
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQ-LACLLYKQGKFTESEAFFNETKLKFPTLPEVPT 382

Query: 322 AL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL----------------LSMK 364
               +L +R D   A+   + + R++E     ++  G L+                L  +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442

Query: 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
           +  AA+     A EL P   ++  GL    LQ  K+ EA+    ++        + L+  
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

Query: 424 GDVHASNASGREKAKKFYESAL 445
               A+    R +A     + +
Sbjct: 503 TFAEAAKIQKRLRADPIISAKM 524

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 20/197 (10%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
             +      F E   +FP    +    A++    G  D AI  ++  + ++         
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE-------- 409

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER 348
                       K+   +  L+                 + +    A+    K+  +D R
Sbjct: 410 ---------VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460

Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407
                I    L L M++ + A+  F  +  L   +    Q    ++ + +K+++ L A  
Sbjct: 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKRLRADP 518

Query: 408 EAMKAMPQSAKALKLVG 424
                M  +    +  G
Sbjct: 519 IISAKMELTLARYRAKG 535

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 65/437 (14%), Positives = 140/437 (32%), Gaps = 80/437 (18%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
            E  + LG  L    +   A+  +  A+                          P+  N 
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------DPD--NY 60

Query: 103 SAINENEVKYKIASCHFALGETKAAIVE-MEGIPSKARNLQMSLLMAKLYRNSRHNRGAV 161
            A       Y+ A+   A+G++KAA+ +  + I  K       L    L         A 
Sbjct: 61  IAY------YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE 114

Query: 162 ACYKECLRHCPFFIEAITALAELGATPKDIISL-FAQTPNRSGR-----APFDHL----- 210
             +K+ L+  P   E   A ++L  + +       A     SG      A  D +     
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL 270
             +    R + A+C I   + +  +       +   +N     +++ +   +G ++ ++ 
Sbjct: 175 WDAEL--RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 271 NFEKVRSIDP------------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318
              +   +D               +  + E A  L     Y+  +     ++  +PS  E
Sbjct: 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292

Query: 319 VFVAL-----SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373
             V           + +    A+    + ++++  ++     +    L  +  + A+  +
Sbjct: 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352

Query: 374 RGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432
             AQE   + +   +GL  +     + ++  Y             K L +       NA 
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDY------------YKILGV-----KRNAK 395

Query: 433 GREKAKKFYESALRLEP 449
            +E  K + + AL+  P
Sbjct: 396 KQEIIKAYRKLALQWHP 412

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 48/327 (14%), Positives = 106/327 (32%), Gaps = 37/327 (11%)

Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
           A   +A    K  L    +++Q   +     L+   +    GK DEA  +F+KV   +P 
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 282 IMTYMDEYAMLLKVK------------CDYSKLSKLVHDL---LSIDPSRPEVFVALS-V 325
                +  + L+K                    +  +  L   L +     E+    +  
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--- 382
             +  + R A+S  + + ++   +   +     L   +   E ++   R   +L  D   
Sbjct: 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246

Query: 383 ----------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHA 428
                     L          ++  +  +A       MK  P  A    ++ + +    +
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306

Query: 429 SNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS- 486
                +  +A +     L++EP  + A    AE ++IE    +A+   E   +   +D  
Sbjct: 307 --KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364

Query: 487 LHVKLAQVFAATNMLQEALSHYEAALR 513
           +   L +        Q+   +    ++
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVK 391

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 16/206 (7%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
            L        ALS    ++  D  +   Y  +  + L+M + +AA+       +L+ D  
Sbjct: 35  KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV--------HASNASGRE 435
            +     H  L+  K+ EA    ++ +K+ P   +  +    +          S A    
Sbjct: 95  AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

Query: 436 KAKKF------YESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LH 488
            +  +       +  L +           AE  + EG    A+S L+   K   D++   
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214

Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
            K++ ++      + +LS     L+L
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKL 240

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 50/261 (19%)

Query: 35  GETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRS 94
            +     + + L     + F   +Y  AI    + L+                       
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---------------------- 172

Query: 95  SSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRN 153
                         E++   A C    GE + AI +++     K  N +    ++ LY  
Sbjct: 173 -CVWDA--------ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223

Query: 154 SRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR--------- 204
              +  +++  +ECL+             ++    K I S  A+   R GR         
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES--AEELIRDGRYTDATSKYE 281

Query: 205 -----APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVD 259
                 P    + +      +   C          + + +E+LQ  P+N++ L + A+  
Sbjct: 282 SVMKTEP-SIAEYTVRSKERI-CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339

Query: 260 AIIGKNDEAILNFEKVRSIDP 280
            I    DEAI ++E  +  + 
Sbjct: 340 LIEEMYDEAIQDYETAQEHNE 360

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 54/329 (16%), Positives = 102/329 (31%), Gaps = 49/329 (14%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           A+      L  F   +   P+N       A V   +GK+  A+ +  KV ++        
Sbjct: 15  AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR 74

Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS----------------VLWERK 330
            +   LL  +    +       +L  +PS  E   A S                  ++  
Sbjct: 75  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY---Q 387
           D   A+++ +K + +         ++    +    P  A+   + A +L+ D        
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194

Query: 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA----------SGR-EK 436
             ++  L     + +L   RE +K      +       V   N            GR   
Sbjct: 195 STLYYQLG--DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252

Query: 437 AKKFYESALRLEP--------GYLGAALALAELHVIEGRNGDAVSLLERYLK---DWADD 485
           A   YES ++ EP                 ++      +  +A+ +    L+   D  + 
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKD----EKPVEAIRICSEVLQMEPDNVN- 307

Query: 486 SLHVKLAQVFAATNMLQEALSHYEAALRL 514
                 A+ +    M  EA+  YEAA   
Sbjct: 308 -ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 52/396 (13%), Positives = 122/396 (30%), Gaps = 77/396 (19%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
            E  + LG  L    +   A+  +  A+                          P+  N 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------DPD--NY 37

Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMS-----LLMAKLYRNSRHN 157
            A       Y+ A+   A+G++KAA+ ++     K   L+M      L    L       
Sbjct: 38  IAY------YRRATVFLAMGKSKAALPDLT----KVIALKMDFTAARLQRGHLLLKQGKL 87

Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISL-FAQTPNRSGR-----APFDHL- 210
             A   +K+ L+  P   E   A ++L    +       A                D + 
Sbjct: 88  DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147

Query: 211 ----DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
                 +    R + A+C I   + +  +       +   +N     +++ +   +G ++
Sbjct: 148 EVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205

Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---------------LS 311
            ++    +   +D     +   +A   +VK     +      +               + 
Sbjct: 206 LSLSEVRECLKLDQ---DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262

Query: 312 IDPSRPEVFVAL-----SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
            +PS  E  V           + +    A+    + ++++  ++     +    L  +  
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322

Query: 367 EAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKE 401
           + A+  +  AQE   + +   +GL  +     + ++
Sbjct: 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 16/206 (7%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
            L        ALS    ++  D  +   Y  +  + L+M + +AA+        L+ D  
Sbjct: 12  KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------- 434
            +     H  L+  K+ EA    ++ +K+ P   +  +    +  ++   R         
Sbjct: 72  AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131

Query: 435 -----EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LH 488
                  A  F +  L +           AE  + EG    A+S L+   K  +D++   
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191

Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
            K++ ++      + +LS     L+L
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKL 217

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 39/297 (13%), Positives = 90/297 (30%), Gaps = 65/297 (21%)

Query: 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307
           ++   LE+ K     G+  +A+  F      DP       +  +       Y + +    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-------DNYIA------YYRRA---- 44

Query: 308 DLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
                           +V       + AL    K I +        + +G+LLL   + +
Sbjct: 45  ----------------TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88

Query: 368 AAVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMK 411
            A   F+   +  P                 ++  +         +    A+    + ++
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470
                A+  +L  +       G   KA    ++A +L+     A   ++ L+   G +  
Sbjct: 149 VCVWDAELRELRAECFI--KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206

Query: 471 AVSLLER-------------YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           ++S +               + K     +  ++ A+         +A S YE+ ++ 
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 82/502 (16%), Positives = 170/502 (33%), Gaps = 57/502 (11%)

Query: 42  KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN 101
            A  L   G+  FR+++Y  AI  Y  AL+      K++          SN S+   S  
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVF------YSNLSACYVSVG 53

Query: 102 -----------VSAINENEVK--YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMA 148
                         +  +  K   + AS +  LG+   A+ ++  +   + N   +    
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL---SLNGDFNDASI 110

Query: 149 KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208
           +       N+ A++  KE            T L+   A  +        +      + F 
Sbjct: 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS-MASFFG 169

Query: 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268
                     Y E+          G   L+    + +        +           +E 
Sbjct: 170 IFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTK------AARLFEEQ 222

Query: 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-S 324
           +    +   +                 K   +       D+   + + P R   ++ +  
Sbjct: 223 LDKNNEDEKLKEK---LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMAL 278

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
           ++ +R D     +Y +K++++D  +   Y  +G +   ++  + A   F  A+EL P+  
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYE 442
             Y  L     + +K  +      EA +  P++ +      ++         +KA K Y+
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT--DKNDFDKALKQYD 396

Query: 443 SALRLEP----GYLGAALALAELHVIE-----GRNGDAVSLLERYLK-DWADDSLHVKLA 492
            A+ LE      Y+G A  + +  ++          +A +LLE+  K D   +   + LA
Sbjct: 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456

Query: 493 QVFAATNMLQEALSHYEAALRL 514
           Q+      + EA++ +E +  L
Sbjct: 457 QMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 54/425 (12%), Positives = 116/425 (27%), Gaps = 36/425 (8%)

Query: 66  YKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125
           +  A+    ++      +  S      R       N++    +++K K      A     
Sbjct: 89  FADAMFDLSVLSLNGDFNDASIEPMLER-------NLNKQAMSKLKEKFGDIDTATATPT 141

Query: 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185
               +        +    S+     +          A Y E        +  ++ L +  
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201

Query: 186 ATPKD-IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA-----QCCIASNDYKGGLELFA 239
               D     F +           + +  +   +   +           ND  G  E   
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261

Query: 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
           + ++ FP  ++  + MA + A    + E    F+K   +D         Y    ++    
Sbjct: 262 KAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS---NNSSVYYHRGQMNFIL 317

Query: 300 SKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIM 355
               +   D      +DP     ++ L  + +         +   ++ R           
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 356 KGNLLLSMKRPEAAVIAFRGAQELRPD----------LRSYQGLVHSYLQFSKVKEALYA 405
              +L      + A+  +  A EL             L     L+          EA   
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 406 AREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA--ALALAELH 462
             +A K  P+S +A   +  +         ++A   +E +  L         A+  AE  
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMK--LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495

Query: 463 VIEGR 467
            ++ R
Sbjct: 496 KVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 31/216 (14%), Positives = 76/216 (35%), Gaps = 22/216 (10%)

Query: 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274
           + HR    Q      +Y    + F +  +  P NI   +++A +     K D+    F +
Sbjct: 307 YYHR---GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363

Query: 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFV---------- 321
            +   P      +      ++  D +   K +      + ++     ++V          
Sbjct: 364 AKRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420

Query: 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
            L+     ++   A +  EK+ ++D R     I    + L  +  + A+  F  + +L  
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

Query: 382 DLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416
            +    Q +  +     KV++ + +     K + ++
Sbjct: 481 TMEEKLQAITFAEAA--KVQQRIRSDPVLAKKIQET 514

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 32/295 (10%), Positives = 74/295 (25%), Gaps = 12/295 (4%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           A    +  L +  +     P  +  +         +      +    +   + P     +
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP---EQV 174

Query: 287 DEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
              A     K     + +L+  L     + P +     +        +  +  L    ++
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234

Query: 343 IRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401
             +  + +      G    +++  +  +     A  L P    +             V+ 
Sbjct: 235 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQR 294

Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAE 460
            L    +A    PQ   A+   G      A    ++       A  L P  + A  +   
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQ--ALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352

Query: 461 LHVIEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
                      + +L +      +  +          A   +Q  L     A  L
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL 407

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 33/298 (11%), Positives = 74/298 (24%), Gaps = 18/298 (6%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           A    +  L +  +     P  +  +         +      +    +   + P     +
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP---QQV 242

Query: 287 DEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
              A     K     + +L+  L     + P +     +        +  +  L    ++
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQA 302

Query: 343 IRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401
             +  + +      G    +++  +  +     A  L P    +             V+ 
Sbjct: 303 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 362

Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAE 460
            L    +A    P+   A+   G      A    ++       A  L P      +A+A 
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGK--QALETVQRLLPVLCQAHGLTPEQ---VVAIAS 417

Query: 461 LHVIEGRNGDAVSLLERYLKDWA----DDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
               +        LL    +                    A   +   LS  + AL  
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 43/436 (9%), Positives = 99/436 (22%), Gaps = 43/436 (9%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
              +             +R +    QA                 KQ   + +  L    +
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131

Query: 94  SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE-MEGIPSKARNLQMSLLMAKLYR 152
           +       V AI  +           AL   +A +    +        +          +
Sbjct: 132 AHGLTPEQVVAIASH------DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185

Query: 153 NSRHNRGAVACYKECLRHCPFFIEAI----TALAELGATPKDIISL---FAQTPNRSGRA 205
                +  +    +     P  + AI         L    + +  L      TP      
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----- 240

Query: 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265
                                A    +  L +  +     P  +  +   +     +   
Sbjct: 241 -----QVVAIASN---GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292

Query: 266 DEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL- 323
              +    +   + P  ++           ++    +L  ++     + P +     +  
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-TVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383
                 +  +  L    ++  +    +      G    +++  +  +     A  L P+ 
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

Query: 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFY 441
             +             V+  L    +A    PQ   A+   G      A           
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP--ALESIVAQLSRP 469

Query: 442 ESALRLEPGYLGAALA 457
           + AL         ALA
Sbjct: 470 DPALAALTNDHLVALA 485

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 41/415 (9%), Positives = 97/415 (23%), Gaps = 57/415 (13%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
              +             +R +    QA                 KQ   + ++ L    +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 94  SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYR 152
           +       V AI  N           AL   +  +  +           +++       +
Sbjct: 166 AHGLTPEQVVAIASN------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219

Query: 153 NSRHNRGAVACYKECLRHCPFFIEAI----TALAELGATPKDIISLFAQ----TPNRSGR 204
                +  +    +     P  + AI         L  T + ++ +  Q    TP     
Sbjct: 220 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-TVQRLLPVLCQAHGLTPQ---- 274

Query: 205 APFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVD 259
                          V A    +         +  L +  +     P  +  +       
Sbjct: 275 --------------QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSR 316
             +      +    +   + P     +   A     K     + +L+  L     + P +
Sbjct: 321 QALETVQRLLPVLCQAHGLTP---QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

Query: 317 PEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375
                +        +  +  L    ++  +    +           +++  +  +     
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437

Query: 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHA 428
           A  L P    +             +   L     A+ A+      AL  +G   A
Sbjct: 438 AHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPA 492

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 71.3 bits (174), Expect = 7e-14
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 20/290 (6%)

Query: 230 DYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
            Y+  +     +    P   +   + + +      K    +   +   + +   +     
Sbjct: 14  SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM--- 70

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL---SVLWERKDERGALSYAEKSIRI 345
           +A  L        +   +   +S           L   S+ +  ++   AL    +    
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--- 127

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEA 402
               +    M   +LL + R + A    +  Q+   D    +     V       K+++A
Sbjct: 128 --DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAEL 461
            Y  +E       +   L      H   A GR E A+   + AL  + G+    + L  L
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHM--AQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511
               G+  +  +     LKD      H  + +  A  N     +  Y  +
Sbjct: 244 SQHLGKPPEVTNRYLSQLKDAHRS--HPFIKEYRAKENDFDRLVLQYAPS 291

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 34/248 (13%), Positives = 70/248 (28%), Gaps = 15/248 (6%)

Query: 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYK 165
            + E    +   + A  +    + E++  PS A  LQ   + A+   +       VA   
Sbjct: 32  RDVERDVFLYRAYLAQRKYGVVLDEIK--PSSAPELQAVRMFAEYLASHSRRDAIVAELD 89

Query: 166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225
             +            L           S++    N        H   S      +  Q  
Sbjct: 90  REMSRSVDVTNTTFLLM--------AASIYFYDQNPDAALRTLHQGDSLECM-AMTVQIL 140

Query: 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN--DEAILNFEKVRSIDPYIM 283
           +  +      +   ++  +  +     L  A V    G     +A   F+++       +
Sbjct: 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200

Query: 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEK 341
             ++  A     +  +     ++ + L  D   PE  + L VL +   K       Y  +
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260

Query: 342 SIRIDERH 349
                  H
Sbjct: 261 LKDAHRSH 268

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 72.7 bits (178), Expect = 8e-14
 Identities = 60/436 (13%), Positives = 128/436 (29%), Gaps = 60/436 (13%)

Query: 103 SAINENEVKYKI--ASCHFA--LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN---SR 155
           S  N+N ++  +    CHF   L E + ++ + E         Q     A +       +
Sbjct: 2   SENNKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLK 61

Query: 156 HNRG----AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211
           H +G    A+ C ++          A   + +  A   +I SL             ++  
Sbjct: 62  HLKGQNEAALECLRK----------AEELIQQEHADQAEIRSLVTW---------GNYAW 102

Query: 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271
               + R  + Q  +  +  K   E F+   +     +       ++     +N+ A + 
Sbjct: 103 VYYHMGRLSDVQIYV--DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL----- 323
           FEK     P    +    A+      ++      +  L   + ++P    + V L     
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383
            +  E ++E       E+++                      P+ A+   + A E  P+ 
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443
                 +H  +      +           M    K L+L              A    + 
Sbjct: 280 ---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL-----------IGHAVAHLKK 325

Query: 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ- 502
           A             LA LH +  +  +A    ++             L   +    + Q 
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385

Query: 503 ----EALSHYEAALRL 514
               +A+ H+   +++
Sbjct: 386 KCEDKAIHHFIEGVKI 401

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 65/468 (13%), Positives = 133/468 (28%), Gaps = 82/468 (17%)

Query: 39  PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPN 98
              KA    +L        +   A+   ++A +  +                        
Sbjct: 47  REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ----------------------QE 84

Query: 99  SFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLM----------- 147
             + + I         A  ++ +G      + ++ +            +           
Sbjct: 85  HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144

Query: 148 AKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207
            +L      N  A  C+++ L   P   E  + LA         I+ +        +   
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA---------IASYRLDNWPPSQNAI 195

Query: 208 DHLDSSRWLH-RYVEAQCCIA---------SNDYKGGLELFAELLQRFPNNIHILLEMAK 257
           D L  +  L+      +  +A           +   G +L  E L++ P    +L   AK
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255

Query: 258 VDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317
                 + D+AI   +K     P       +     + K            +  +   R 
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK------------VFQVMNLRE 303

Query: 318 EVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377
                   L E      A+++ +K+   ++       +  +L     + E A   F+   
Sbjct: 304 NGMYGKRKLLELIGH--AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361

Query: 378 ELRPDLRSYQGLVHSYLQFSKVK-----EALYAAREAMKAMPQSAKALKLVGDVHASNAS 432
                  + Q L   Y  F   +     +A++   E +K   +S +  K+          
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------- 411

Query: 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
            ++K +K  +  L        A   LA L  +  +   A    ER L+
Sbjct: 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 29/243 (11%), Positives = 62/243 (25%), Gaps = 34/243 (13%)

Query: 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206
            AK YR       A+   K+ L + P        +              A+         
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG---------CCYRAKVFQVMNLRE 303

Query: 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
                  + L     A            +    +  +   N   +   +A + A+  + +
Sbjct: 304 NGMYGKRKLLELIGHA------------VAHLKKADEANDNLFRVCSILASLHALADQYE 351

Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK--LVHDL--LSIDPSRPEVFVA 322
           EA   F+K  S +   +     +      +    K     + H +  + I+    E    
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411

Query: 323 LSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382
              L +          A+  +  +        +   L    ++ + A        E    
Sbjct: 412 KDKLQK---------IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462

Query: 383 LRS 385
           + S
Sbjct: 463 IPS 465

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 5/205 (2%)

Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
               P+  +    L ++  E+ +   A+    K++ +       +    ++L    + + 
Sbjct: 2   PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61

Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
           A++ ++ A  + P    +Y  + ++  +   V+ AL     A++  P  A A   +  +H
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121

Query: 428 ASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486
               SG   +A   Y +AL+L+P +  A   LA    I     D    +++ +   AD  
Sbjct: 122 K--DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179

Query: 487 LHVKLAQVFAATNMLQEALSHYEAA 511
              +L  V    +ML      +  A
Sbjct: 180 EKNRLPSVHPHHSMLYPLSHGFRKA 204

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 2/176 (1%)

Query: 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305
           P +   L  +A +    G  +EA+  + K   + P         A +L+ +    +    
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 306 VHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364
             + + I P+  + +  + + L E +D +GAL    ++I+I+      +    ++     
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125

Query: 365 RPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419
               A+ ++R A +L+PD    Y  L H         +     ++ +  +    + 
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 37/169 (21%)

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQ-GLVHSYLQFSKVKEALYAA 406
            H        N+       E AV  +R A E+ P+  +    L     Q  K++EAL   
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
           +EA++  P  A A   +G+          + A + Y  A+++ P +  A           
Sbjct: 67  KEAIRISPTFADAYSNMGNTL--KEMQDVQGALQCYTRAIQINPAFADA----------- 113

Query: 466 GRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
                                 H  LA +   +  + EA++ Y  AL+L
Sbjct: 114 ----------------------HSNLASIHKDSGNIPEAIASYRTALKL 140

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 1/195 (0%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
            + +  + L+ + L+ FP        +A V    GK  EA++++++   I P        
Sbjct: 23  GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDE 347
               LK   D     +     + I+P+  +    L S+  +  +   A++    ++++  
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAR 407
                Y    + L  +          +    +  D      L   +   S +    +  R
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFR 202

Query: 408 EAMKAMPQSAKALKL 422
           +A+     +    K+
Sbjct: 203 KAIAERHGNLCLDKI 217

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 40/284 (14%), Positives = 88/284 (30%), Gaps = 34/284 (11%)

Query: 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE--YAMLLKVKCDYSKLSKLVHDLLS 311
           E  +   ++ K    +      R  D Y  T+  E        V+ +  K  + + ++L 
Sbjct: 39  EEEEAKHVLQKLQGLVDRLYCFR--DSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG 96

Query: 312 IDPSRPEVF----VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
                 +       AL+V  +   E  A     K+++++   +  +   G +        
Sbjct: 97  SAQVEAQALMLKGKALNVTPDYSPE--AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT 154

Query: 368 AAVIAFRGAQELRPDLRSY---------QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418
           +A   F GA     +  S                      V +++  A+ A++      +
Sbjct: 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214

Query: 419 ALKLVGDVHASNASGR-------EKAKKFYESALRLEPGYLGAALA---LAELHVIEGRN 468
           +  ++G+ + S            ++A   Y  A +++             A LH  E   
Sbjct: 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY 274

Query: 469 GDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYE 509
           G+A+    +       W +     +  Q+    + L   L    
Sbjct: 275 GEALEGFSQAAALDPAWPE--PQQREQQLLEFLSRLTSLLESKG 316

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457
           ++++ L    E + +    A+AL L G           +A+     A++LEP  + A   
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 458 LAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF---------AATNMLQEALSHY 508
           L E++  +G    A +     L    +      L+ V            +  + +++   
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 509 EAALRL 514
           + A+++
Sbjct: 203 KLAVQM 208

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 25/256 (9%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFE---KVRSIDPYIMTY 285
           N+Y   +E+F +L  +  N+ +I    A     + K D A  + E      +        
Sbjct: 17  NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA---K 73

Query: 286 MDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEK 341
             ++    K+     + S  +      +  D +R +++  + S  + + +   A+ Y EK
Sbjct: 74  SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133

Query: 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYL-QFS 397
            IR        +   G      K    A  +F    EL+P++     ++   ++     +
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193

Query: 398 KVKEALYAAREAMKAMPQSAKALK-LVGDVH-----ASNASGR-EKAKKFYESALRLEPG 450
           K   A     + ++         K  + + +         +    KA   +++ L L+P 
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253

Query: 451 YLGA----ALALAELH 462
              A     + L   H
Sbjct: 254 NKKAIDGLKMKLEHHH 269

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 37/245 (15%), Positives = 80/245 (32%), Gaps = 22/245 (8%)

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAE---KSIR 344
           YA  L    +Y++  ++ + L +   + P ++       +E      A    E     + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403
             +     +   G +L+   +   A+  ++ A +        Y  +   +        A+
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP----GYLGAALAL 458
               + ++      K    +G  +    +    KA   +   L L+P    GYL  A A 
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAY--YYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186

Query: 459 AELHVIEGRNGDAVSLLERYLKDWADDSLHVK---------LAQVFAATNMLQEALSHYE 509
           A     + + G A    E+ ++  A      K         +A  +       +A + ++
Sbjct: 187 AAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245

Query: 510 AALRL 514
             L L
Sbjct: 246 NILAL 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 22/200 (11%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSY 393
           A+   E +++ D +H+  +   G      ++   A+ A R   EL+PD   +   L  S+
Sbjct: 83  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142

Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------EKAKK 439
              S  ++A    R+ ++  P  A  +    +       G                + K+
Sbjct: 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 440 FYESALRLEPGYLGAAL--ALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQV 494
            + +A+RL+P  +   +   L  L  + G    AV      L    +     L  KL   
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL--LWNKLGAT 260

Query: 495 FAATNMLQEALSHYEAALRL 514
            A  N  +EA++ Y  AL L
Sbjct: 261 LANGNQSEEAVAAYRRALEL 280

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 24/211 (11%)

Query: 327 WERKDERGALSYAEKSIRIDE----RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382
           W    +    +  +K  + +E    R  P    +G   L       AV+ F  A +  P 
Sbjct: 37  WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK 96

Query: 383 -LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441
            + ++Q L  +  +  +   A+ A R  ++  P +  AL  +     +N S + +A +  
Sbjct: 97  HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF-TNESLQRQACEIL 155

Query: 442 ESALRLEPGY---------------LGAALALAELHVIEGRNGDAVSLLERYLK---DWA 483
              LR  P Y               LG +  +    + +    +   L    ++      
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215

Query: 484 DDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           D  +   L  +F  +    +A+  + AAL +
Sbjct: 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 48/287 (16%), Positives = 85/287 (29%), Gaps = 49/287 (17%)

Query: 264 KNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEV 319
            +D     ++K    +    +    +       +     L   V      +  DP   E 
Sbjct: 41  YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100

Query: 320 FVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378
           +  L +   E + E  A+S   + + +   +    +       +      A    R    
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160

Query: 379 LRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422
             P                 L   + ++ S L  S   E       A++  P S      
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP--- 217

Query: 423 VGDVH-----ASNASGR-EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGD 470
             DV        N SG  +KA   + +AL + P        LGA LA         ++ +
Sbjct: 218 --DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA--NG----NQSEE 269

Query: 471 AVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           AV+   R L+    +        L          +EA+ H+  AL +
Sbjct: 270 AVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEALNM 314

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 25/272 (9%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-------- 280
            D    + LF   +Q+ P ++     +    A   +   AI    +   + P        
Sbjct: 78  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 137

Query: 281 YIMTYMDE------YAML---LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331
             +++ +E        +L   L+    Y+ L     +  +           L  L     
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP-AEEGAGGAGLGPSKRILGSLLSDSL 196

Query: 332 ERGALSYAEKSIRIDERHI--PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG 388
                     ++R+D   I        G L       + AV  F  A  +RP+    +  
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256

Query: 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRL 447
           L  +    ++ +EA+ A R A++  P   ++   +G        G   +A + +  AL +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEALNM 314

Query: 448 EPGYLGAALALAELHVIEGRN-GDAVSLLERY 478
           +    G       +          A+S+L + 
Sbjct: 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 22/182 (12%)

Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----------------LRSYQGLVHSYLQ 395
            + K +  +   +   AV  FR    L  D                  +    L  +Y +
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA 454
                +A    +E ++  P +   L+   ++      G+ + A + YE  L+LE   L A
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR--GQEKDALRMYEKILQLEADNLAA 124

Query: 455 ALALAELHVIEGRNGD-AVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
            + L   + +        +    + L           +       T   ++A +  +  +
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184

Query: 513 RL 514
             
Sbjct: 185 LR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 26/224 (11%), Positives = 74/224 (33%), Gaps = 27/224 (12%)

Query: 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307
           ++  +L+        G+N +A+  F +  +++        +   +               
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-------DRTEMY-----------YWT 44

Query: 308 DLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
           ++        ++   L     + ++   A  + ++ ++    ++        + +   + 
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 367 EAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
           + A+  +    +L  D      + G  + YL   + K+ L    + + +  +   A    
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYY-YLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 424 GDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEG 466
           G       + R EKA+   +  +   P    A   L ++  IE 
Sbjct: 164 GLSKLF--TTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 32/173 (18%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
            +Y      + ELLQ+ PNN+  L   A++    G+  +A+  +EK+  ++        +
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-------D 120

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER 348
                        L    +                      + E+  L    K +    +
Sbjct: 121 NLAA------NIFLGNYYYLTA-------------------EQEKKKLETDYKKLSSPTK 155

Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKE 401
                   G   L   R E A  + +      P   + + L        +V  
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 22/189 (11%), Positives = 56/189 (29%), Gaps = 17/189 (8%)

Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMK----------------GNLLLSMKRPE 367
           S   E      A+SY  ++I ++      Y                          +  +
Sbjct: 12  SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD 71

Query: 368 AAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426
            A + ++   +  P+ +   +      +   + K+AL    + ++    +  A   +G+ 
Sbjct: 72  KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131

Query: 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486
           +   A   +K  +     L        A        +   R   A + L++ +  +    
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191

Query: 487 LHVKLAQVF 495
               L ++ 
Sbjct: 192 AQKTLDKIL 200

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 23/239 (9%), Positives = 63/239 (26%), Gaps = 55/239 (23%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
            + ++    +     +  +A+  ++Q +    +   +      +++  ++  SS      
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTI---ALNIDRTEMYYWTNVDKNSEISS------ 54

Query: 103 SAINENEVKYKIASCHFALGETKAAIVE-MEGIPSKARNLQMSLLMAKLYRNSRHNRGAV 161
                 ++  ++A  +        A +   E +     N+      A++       + A+
Sbjct: 55  ------KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 162 ACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221
             Y++ L+     + A   L                                     Y  
Sbjct: 109 RMYEKILQLEADNLAANIFLGNY----------------------------------YYL 134

Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
                     K  LE   + L       +             + ++A  + +KV    P
Sbjct: 135 TA-----EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 7/181 (3%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393
            L     ++R   +    ++M  +  L M    A  +A +    L P    +   L    
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67

Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYL 452
               +  EA    ++A  A P+       +G       +G+ E A   Y  A +L P   
Sbjct: 68  WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE--DAGQAEAAAAAYTRAHQLLPEEP 125

Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
                L               L  +     A     V+     +      E       A 
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAE---QLACAR 182

Query: 513 R 513
            
Sbjct: 183 T 183

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALA 459
             L   R A++  PQ   A  ++ D       G     +   +  L L PG+  A   L 
Sbjct: 7   RELLQLRAAVRHRPQDFVAWLMLADAEL--GMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 460 ELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
            +   + R+ +A  LL++      +     + + L          + A + Y  A +L
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPG--IALWLGHALEDAGQAEAAAAAYTRAHQL 120

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 7/198 (3%)

Query: 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287
           + D    L      ++  P +    L +A  +  +G      +  ++  ++ P     + 
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRID 346
               +   +  +++ + L+       P  P + + L   L +      A +   ++ ++ 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKV---KEAL 403
                   +   LL   +R          + ++R  +    G V  +   S+     E L
Sbjct: 122 PEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQL 178

Query: 404 YAAREAMKAMPQSAKALK 421
             AR   +A+  S + L 
Sbjct: 179 ACARTRAQAIAASVRPLA 196

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 4/118 (3%)

Query: 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
                ++  R A   RP    ++  L  + L          A +  +   P   +A+  +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 424 GDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
           G V       R  +A    + A    P + G AL L       G+   A +   R  +
Sbjct: 64  GRVR--WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 432 SGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHV 489
           +    +      +A+R  P    A L LA+  +  G        ++R L           
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 490 KLAQVFAATNMLQEALSHYEAALRL 514
           +L +V        EA    + A   
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDA 86

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 20/170 (11%), Positives = 41/170 (24%), Gaps = 12/170 (7%)

Query: 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH---LDSSRWL 216
            +   +  +RH P    A   LA+                  +G         L      
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADA---------ELGMGDTTAGEMAVQRGLALHPGHPE 58

Query: 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276
                 +       +     L  +     P +  I L +       G+ + A   + +  
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118

Query: 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326
            + P       +     +  CD+  L  L   + +            + L
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 48/330 (14%), Positives = 95/330 (28%), Gaps = 67/330 (20%)

Query: 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
           ++ +    W+    EAQ  +  +  + G     E       +     E        G   
Sbjct: 26  WEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN---PFKDWPGAFEEGLKRLKEGDLP 82

Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SV 325
             IL  E                                    +  DP   E +  L   
Sbjct: 83  VTILFMEAA----------------------------------ILQDPGDAEAWQFLGIT 108

Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385
             E ++E+ A+   ++ + +   ++   +       +    + A  A +   +  P  + 
Sbjct: 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168

Query: 386 -YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH----------ASNASGR 434
             +    S     ++ ++   +           +A    GD+             + SG 
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228

Query: 435 -EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK---DWAD 484
             +A   + +AL + P        LGA   LA       R+ +AV    R L+    +  
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGA--TLANG----DRSEEAVEAYTRALEIQPGFIR 282

Query: 485 DSLHVKLAQVFAATNMLQEALSHYEAALRL 514
                 L          +EA+S++  AL L
Sbjct: 283 --SRYNLGISCINLGAYREAVSNFLTALSL 310

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 20/198 (10%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSY 393
           A    E   +        +   G      ++   A+IA   A+ L P  +  +  L  S+
Sbjct: 40  AALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99

Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------EKAKK 439
                   AL + R  + + PQ  +   +                           + + 
Sbjct: 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159

Query: 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFA 496
              +AL + P       +L  L+ +      A + L R ++   D A   L  KL    A
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLA 217

Query: 497 ATNMLQEALSHYEAALRL 514
             N  QEAL  Y  AL +
Sbjct: 218 NGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 37/232 (15%)

Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
               P R E + +L     E + +  A+     +  +D + I  +        +     A
Sbjct: 48  CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107

Query: 369 AVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKA 412
           A+ + R     +P                   + Q     +   ++ +E       A++ 
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167

Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGY------LGAALALAELHVIE 465
            P  A+    +G ++  N S   + A      A+ L P        LGA   LA      
Sbjct: 168 NPNDAQLHASLGVLY--NLSNNYDSAAANLRRAVELRPDDAQLWNKLGA--TLANG---- 219

Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
            R  +A+    R L     +    +   +A  ++  +    A      A+ +
Sbjct: 220 NRPQEALDAYNRALDINPGYVR--VMYNMAVSYSNMSQYDLAAKQLVRAIYM 269

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 24/281 (8%)

Query: 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278
             E    +   +       F  + Q  P        +    A   K+  AI+     R +
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 279 DP-YIMTYM------------DE-YAML---LKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321
           DP  I  +             +   A L   L  +  Y +L  +       D     V  
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV-DIDDLNVQS 143

Query: 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
                    + R   +    ++ ++      +   G L       ++A    R A ELRP
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKK 439
           D  + +  L  +    ++ +EAL A   A+   P   + +  +   ++     + + A K
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS--NMSQYDLAAK 261

Query: 440 FYESALRLEPGYLGAA--LALAELHVIEGRNGDAVSLLERY 478
               A+ ++ G        +      +       ++++ R 
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 26/201 (12%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVH 391
             +           +    + +G  +L +     A +AF    +  P+        GL  
Sbjct: 6   NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65

Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451
           +  +  K   A+ A   A    P+       +   H +N      A     + L  +P Y
Sbjct: 66  AENE--KDGLAIIALNHARMLDPKDIAVHAALAVSH-TNEHNANAALASLRAWLLSQPQY 122

Query: 452 LGAALALAELHVIE---------------GRNGDAVSLLERYLK---DWADDSLHVKLAQ 493
                   +  V                     +  +LL   L+   + A   LH  L  
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ--LHASLGV 180

Query: 494 VFAATNMLQEALSHYEAALRL 514
           ++  +N    A ++   A+ L
Sbjct: 181 LYNLSNNYDSAAANLRRAVEL 201

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 8/211 (3%)

Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
                   + ++ L     +R +   A     K++ ID      +     +  +   P+ 
Sbjct: 30  DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89

Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQSAKALKLVGD 425
           A   +R A        R          +  + +EA     EA +    P+ ++  + +G 
Sbjct: 90  ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149

Query: 426 VHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWA 483
           V       +  +AK+++E +LRL       AL +A+L   E     A    + + +    
Sbjct: 150 VSL--QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 484 DDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           +    +   ++         A S+     RL
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 10/241 (4%)

Query: 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276
           H +  +   +    + G  +   +  +         +++       G  ++A +   K  
Sbjct: 6   HHHHHSSGLVPRGSHMG-DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 277 SIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERG 334
            IDP     +    A++ + + +     +     L+ D     V       L+E+K    
Sbjct: 65  EIDPSSADAHAA-LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123

Query: 335 ALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH 391
           A     ++ +  +       +   G + L MK+P  A   F  +  L  +       +  
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183

Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG 450
              +  +   A        +   Q+A++L L   +         + A  +     RL PG
Sbjct: 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA--KVFEDRDTAASYGLQLKRLYPG 241

Query: 451 Y 451
            
Sbjct: 242 S 242

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.9 bits (155), Expect = 7e-11
 Identities = 32/294 (10%), Positives = 72/294 (24%), Gaps = 17/294 (5%)

Query: 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289
             +  L +  +     P  +  +         +      +    +   + P     +   
Sbjct: 207 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP---DQVVAI 263

Query: 290 AMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRI 345
           A  +  K     + +L+  L     + P +     +        +  +  L    ++  +
Sbjct: 264 ASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404
               +           +++  +  +     A  L PD   +             V+  L 
Sbjct: 324 TPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383

Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
              +A    P    A+   G   A      ++       A  L P      +A+A     
Sbjct: 384 VLCQAHGLTPDQVVAIASNGGKQALETV--QRLLPVLCQAHGLTPDQ---VVAIASHDGG 438

Query: 465 EGRNGDAVSLLERYLKDWADDS----LHVKLAQVFAATNMLQEALSHYEAALRL 514
           +        LL    +                    A   +Q+ L     A  L
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL 492

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 49/493 (9%), Positives = 114/493 (23%), Gaps = 43/493 (8%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
              +             +R +    QA                 KQ   + +  L    +
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319

Query: 94  SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMA----- 148
           +       V AI  ++   +      AL   +  +  +     +A  L    ++A     
Sbjct: 320 AHGLTPDQVVAIASHDGGKQ------ALETVQRLLPVLC----QAHGLTPDQVVAIASNG 369

Query: 149 KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208
              +     +  +    +     P  + AI +     A       L              
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQ----AHGLT 425

Query: 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268
                         Q   A    +  L +  +     P  +  +         +    + 
Sbjct: 426 PDQVVAIASHDGGKQ---ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482

Query: 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLW 327
           +    +   + P  +  +       +      +L  ++     + P +     +      
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542

Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSY 386
             +  +  L    ++  +    +      G    +++  +  +     A  L    + + 
Sbjct: 543 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAI 602

Query: 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESAL 445
              +        V+  L    +A    P    A+          A    ++       A 
Sbjct: 603 ASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK--QALETVQRLLPVLCQAH 660

Query: 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV----KLAQVFAATNML 501
            L P      +A+A     +        LL    +        V           A   +
Sbjct: 661 GLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETV 717

Query: 502 QEALSHYEAALRL 514
           Q  L     A  L
Sbjct: 718 QRLLPVLCQAHGL 730

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 75/533 (14%), Positives = 165/533 (30%), Gaps = 165/533 (30%)

Query: 4   PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAI 63
           P+  +  L  Q L              S+     +  L+  ++      L + + Y   +
Sbjct: 195 PETVLEML--QKLLYQIDPNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 64  ----HTY-KQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118
               +    +A   + +       S +  L+T  +        V+          I+  H
Sbjct: 248 LVLLNVQNAKAWNAFNL-------SCKILLTTRFKQ-------VTDFLSAATTTHISLDH 293

Query: 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178
            ++  T     E++ +  K  + +   L                  +E L   P      
Sbjct: 294 HSMTLTPD---EVKSLLLKYLDCRPQDLP-----------------REVLTTNPR----- 328

Query: 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA---SNDYKGGL 235
             L+ +  + +D                + H++  + L   +E+   +      +Y+   
Sbjct: 329 -RLSIIAESIRD-------GLATWDN--WKHVNCDK-LTTIIES--SLNVLEPAEYR--- 372

Query: 236 ELFAELLQRFPNNIHI---LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292
           ++F + L  FP + HI   LL               ++ F+ ++S    ++  + +Y+++
Sbjct: 373 KMF-DRLSVFPPSAHIPTILLS--------------LIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 293 LKVKCDYSKLSKLVHDL-LSIDPSRPEVFVAL--SVLWERKDERGALSYAEKSIRIDE-- 347
            K      + +  +  + L +       + AL  S++      +   S       +D+  
Sbjct: 418 EK---QPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 348 -RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAA 406
             HI G+ +K             +  FR    +  D R        +L+  K+       
Sbjct: 474 YSHI-GHHLKN------IEHPERMTLFR---MVFLDFR--------FLE-QKI------- 507

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL-EPGYLGAALALAELHVIE 465
           R    A   S   L  +  +            KFY+  +   +P Y             E
Sbjct: 508 RHDSTAWNASGSILNTLQQL------------KFYKPYICDNDPKY-------------E 542

Query: 466 GRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSH-----YEAALR 513
                 V+ +  +L    ++ +  K       T++L+ AL       +E A +
Sbjct: 543 RL----VNAILDFLPKIEENLICSK------YTDLLRIALMAEDEAIFEEAHK 585

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 50/260 (19%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322
            + DEAI ++ K   +   I                 ++                    A
Sbjct: 19  RQFDEAIEHYNKAWELHKDITYL-------------NNR--------------------A 45

Query: 323 LSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382
               +E+ +   A+S    ++         Y +       +      +   +   E    
Sbjct: 46  A-AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 383 LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFY 441
             +         +    ++ L  A       P+ A+  +L G  + +        A K Y
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK--SDWPNAVKAY 162

Query: 442 ESALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQV 494
              ++  P         A ALA+L        +A++   + ++   ++     +++ A  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKL----MSFPEAIADCNKAIEKDPNFVR--AYIRKATA 216

Query: 495 FAATNMLQEALSHYEAALRL 514
             A      AL   +AA   
Sbjct: 217 QIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 10/194 (5%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEV 319
           G+ + AI                  +Y ++ K           + DL   +         
Sbjct: 52  GEYETAISTLNDAVEQGR---EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 320 FVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379
                +L + ++    L  AE    ++        ++G    +      AV A+    + 
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

Query: 380 RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKA 437
            P+  R Y     +  +     EA+    +A++  P   +A           A      A
Sbjct: 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ--IAVKEYASA 226

Query: 438 KKFYESALRLEPGY 451
            +  ++A   +   
Sbjct: 227 LETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 11/167 (6%)

Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412
              +GN     ++ + A+  +  A EL  D+        +  +  + + A+    +A++ 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67

Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA---ALALAELHVIEGRN 468
             +     K++    A    G         +  +      L     A  L +L       
Sbjct: 68  GREMRADYKVISKSFARI--GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL----RNA 121

Query: 469 GDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
              +   E       + +       + +   +    A+  Y   ++ 
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTY 285
              D K  +E + + L        IL ++          ++ +   E    ++P      
Sbjct: 91  KLGDLKKTIEYYQKSLTEH-RTADILTKL-------RNAEKELKKAEAEAYVNPEKAEEA 142

Query: 286 MDEYAMLLKVKC------DYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSY 338
             E                Y+++       +   P     +    + L +      A++ 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEM-------IKRAPEDARGYSNRAAALAKLMSFPEAIAD 195

Query: 339 AEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQ 395
             K+I  D   +  YI K    +++K   +A+     A+    ++    S + +   Y +
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 20/201 (9%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
                +D R A +  E +++ D ++   ++++  +   +K  + A  +FR A  ++PD  
Sbjct: 17  EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76

Query: 384 --RSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQSAKALKLVGDVHASNASGR-EKAK 438
              +  G      + ++  E++    +A+     P    A    G    S   G+   A+
Sbjct: 77  EINNNYGWFL-CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI--CSAKQGQFGLAE 133

Query: 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-----LHVKLAQ 493
            + + +L  +P +  A   LA   ++ G+ GDA    ++Y             L  K+A+
Sbjct: 134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193

Query: 494 VFAATNMLQEALSHYEAALRL 514
                  L  A + YE   +L
Sbjct: 194 ------ALGNAQAAYEYEAQL 208

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 22/149 (14%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR- 434
           A++          L   Y++    ++A  +  +A+K+ P++  A  +  +++        
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL--KVN 58

Query: 435 EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSL- 487
           +KA++ +  AL ++P         G  L    L     R  ++++  ++ L D    +  
Sbjct: 59  DKAQESFRQALSIKPDSAEINNNYGWFL-CGRL----NRPAESMAYFDKALADPTYPTPY 113

Query: 488 --HVKLAQVFAATNMLQEALSHYEAALRL 514
             ++      A       A ++ + +L  
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAA 142

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 18/246 (7%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTY 285
           + + +     L               +         G  ++A   F K    +    + Y
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS---EFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIR 344
           ++ +A LL    +  +        L +D S    +    +V   ++  + A    EK++R
Sbjct: 61  IN-FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKE 401
               +   + M G +L+ +++P+ A+   + A EL  +    R   G+  +      + E
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG--MLDE 177

Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA----AL 456
           AL       +  P  A A    G  +A       EKA +  + A+ ++P ++ A     L
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYK--ENREKALEMLDKAIDIQPDHMLALHAKKL 235

Query: 457 ALAELH 462
                H
Sbjct: 236 LGHHHH 241

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393
           A     K+I  ++     YI   NLL S+   E A+  +  A EL      +Y G  + Y
Sbjct: 42  AAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101

Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYL 452
           +     KEA     +A++A  ++     ++G V       + + A  + + A+ L     
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL--VKLEQPKLALPYLQRAVELNENDT 159

Query: 453 GA----ALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEAL 505
            A     + LA      G   +A+S      +     AD          +A     ++AL
Sbjct: 160 EARFQFGMCLANE----GMLDEALSQFAAVTEQDPGHAD--AFYNAGVTYAYKENREKAL 213

Query: 506 SHYEAALRL 514
              + A+ +
Sbjct: 214 EMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 29/226 (12%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 266 DEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFV 321
             +  +      + P             +    ++    K        +  +      ++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 322 AL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380
              ++L    +   AL++ +K++ +D      Y   GN+ +  +  + A   F  A    
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAK 438
            +    +  L    ++  + K AL   + A++      +A    G   A    G  ++A 
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA--NEGMLDEAL 179

Query: 439 KFYESALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLK 480
             + +    +PG+  A     +  A           A+ +L++ + 
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYK----ENREKALEMLDKAID 221

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 18/225 (8%)

Query: 301 KLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNL 359
           ++ +++      D  R ++      +         A +   +++ I       +   G  
Sbjct: 27  RMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 360 LLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416
           L      +AA  AF    EL P        +G+   Y    + K A        +  P  
Sbjct: 87  LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG--RDKLAQDDLLAFYQDDPND 144

Query: 417 AKALKLVGDVHASNASGREKAKKFYESALRL----EPGYLGAALALAELHVIEGRNGDAV 472
                 +           ++AK+  +         + G+      L  +   +       
Sbjct: 145 PFRSLWLYLAEQKL--DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE-QTLMERLK 201

Query: 473 SLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           +            ++   +  L + + +   L  A + ++ A+  
Sbjct: 202 ADATDNTSLAEHLSE--TNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 42/287 (14%)

Query: 231 YKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
            +  L    ++L            +L E   +   +G    A  +F +            
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA----------- 69

Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRI 345
                                  L+I P  PEVF  L   L +  +   A    +  + +
Sbjct: 70  -----------------------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106

Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405
           D  +   ++ +G  L    R + A        +  P+       ++   Q    K+A   
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166

Query: 406 AREAMKAMPQSAKALKLVGDV--HASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
            ++  +   +      +V     + S  +  E+ K        L          L + ++
Sbjct: 167 LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226

Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYE 509
             G    A +L +  + +   + + H       +     Q+ L+  +
Sbjct: 227 SLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 360 LLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418
             S + PEA + A +      P +   +  L   YL  +    +L A R+A++   ++A+
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 419 ALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476
               +  V    AS     + +   + AL L+   + A + LA    ++     A+ L +
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139

Query: 477 RYLKDWADDSLHVKLAQVFAATNMLQEA 504
           + +   +      +L +      +LQ  
Sbjct: 140 KVMDLNSPRINRTQLVESINMAKLLQRR 167

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVH 391
            L   +  IR + ++   + + G   L       +++A+R A +LR +   L +    V 
Sbjct: 29  QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88

Query: 392 SYL-QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
            Y        +      +A+        AL L+             +A + ++  + L  
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ--ANYAQAIELWQKVMDLNS 146

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 23/142 (16%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK 436
           Q +R + +  +  +H +      +  L A ++ ++A PQ+++   L+G+ +         
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSN 62

Query: 437 AKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLLERYLK-DWADDSLHVKLA 492
           +   Y  AL+L         ALA +   +          +++++ L  D  + +  + LA
Sbjct: 63  SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122

Query: 493 QVFAATNMLQEALSHYEAALRL 514
                     +A+  ++  + L
Sbjct: 123 SDAFMQANYAQAIELWQKVMDL 144

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 13/137 (9%), Positives = 48/137 (35%), Gaps = 4/137 (2%)

Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
           +  + +  L+   + ++  P N      + +          ++L + +   +        
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 287 DEYAMLLKVKCDYSKLSK---LVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
              A +L  +      ++   ++   L++D +     + L S  + + +   A+   +K 
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141

Query: 343 IRIDERHIPGYIMKGNL 359
           + ++   I    +  ++
Sbjct: 142 MDLNSPRINRTQLVESI 158

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 23/179 (12%)

Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411
            +  G  L ++ R +AA+  F  A +  P    +   L  + L+   V  AL   +  + 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 412 AMPQSAKA-------LKLVGDVHASNASGR---EKAKKFYESALRLEPGYLGA----ALA 457
             P+              +         G+   E+A    + A R+ P Y        L 
Sbjct: 68  RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127

Query: 458 LAELHVIEGRNGDAVSLLER--YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
            A L    G    A + L++   L+D  +  +   LA+++ +   L EAL+ Y  AL  
Sbjct: 128 YALL----GERDKAEASLKQALALEDTPE--IRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEV 319
           G+ D A+  FE+    +P      +    L + +     ++  + +    ++  P     
Sbjct: 19  GRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75

Query: 320 F----VALSVLWERKDERG--------ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
           +     A   L+ + ++R         ALS  + + R++ R+ P ++ +G +   +   +
Sbjct: 76  YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135

Query: 368 AAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
            A  + + A  L         L   YL   ++ EAL    +A++  P+            
Sbjct: 136 KAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 428 ASNASGR-EKAKKFYESALRLEP 449
                G+ E+A +          
Sbjct: 196 --LLKGKAEEAARAAALEHHHHH 216

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
            S L+ + + EA  A     +  P+  +A + +G   A N   +   A      A  L+P
Sbjct: 25  LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDP 82

Query: 450 GYLGAALALAELHVIEGRNGDAVSLLERYLK 480
             +    ALA  H  E     A++ L  +L 
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLL 113

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-L 383
            + +  +   A    E   + +      +   G      ++   A+IA   A+ L P  +
Sbjct: 26  SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415
             +  L  S+        AL + R  + + PQ
Sbjct: 86  AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
            +    + +G  +L +     A +AF    +  P+   +++ L  +  +  K   A+ A 
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451
             A    P+       +   H  N      A     + L  +P Y
Sbjct: 75  NHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQ 493
            +A   +E+  + EP    A  +L        ++G A+  L      D  D ++H  LA 
Sbjct: 34  AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93

Query: 494 VFAATNMLQEALSHYEAALRL 514
                +    AL+   A L  
Sbjct: 94  SHTNEHNANAALASLRAWLLS 114

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 4/139 (2%)

Query: 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK 330
               +R +    +  +            +    K+   L  +D      F+ L    +  
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 331 DE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGL 389
                AL        +D              L +   + A   F  A+ L     +++ L
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 390 VHSYLQFSKVKEALYAARE 408
                +   + EA+ A ++
Sbjct: 126 ---AARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
                    + + L  +G       +G+ + A+K +++   L+       L L       
Sbjct: 8   AMLRGLSEDTLEQLYALGFNQY--QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 466 GRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
           G    A+           ++       A+       L  A S + +A  L
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 372 AFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430
                + L  D L     L  +  Q  K  +A    +         A+    +G      
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-- 63

Query: 431 ASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489
           + G  E+A + Y     ++          AE H+  G    A S         A    H 
Sbjct: 64  SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 490 KLAQVFAATNMLQEALSHYE 509
            LA    A  ML EA++  +
Sbjct: 124 ALAA--RAGAML-EAVTARK 140

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 17/171 (9%)

Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411
           Y  KG       R   AV+      +           L  +Y++   V         ++ 
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70

Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA----ALALAELHVIEG 466
             P + K   ++G  +      + + A           P          +AL  L    G
Sbjct: 71  DAPDNVKVATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL----G 124

Query: 467 RNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           R  +A+   +  L    +     +H  +A  +      +EAL H++ A  L
Sbjct: 125 RFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPE 318
            G+  +A++  E+V   D      +D    L         + +    L   L+  P   +
Sbjct: 21  AGRYSQAVMLLEQVYDADA---FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK 77

Query: 319 VFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377
           V   L     + +    A+    K    +  +       G  L ++ R + A+ +F+ A 
Sbjct: 78  VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 378 ELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
            LRP+  + ++ +  SY Q  + +EAL   ++A +    ++  L LV
Sbjct: 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
              D    +V + L     +           E+S+     ++    + G   + +++ + 
Sbjct: 35  YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94

Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
           AV       E  P        L  +     +  EA+ + + A+   P   K  + +   +
Sbjct: 95  AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 428 ASNASGR-EKAKKFYESALRLEPGYLGAALALAELH 462
                GR E+A   ++ A  L+ G    ++ LA + 
Sbjct: 155 --EQMGRHEEALPHFKKANELDEGA---SVELALVP 185

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 21/154 (13%), Positives = 39/154 (25%), Gaps = 11/154 (7%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322
           G           +  I    +  +   A        Y     +   L  +D      F+ 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 323 LSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
           L    +   +   A+        +D             LL       A      AQEL  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415
           +            +F ++   + +  EA+K   +
Sbjct: 121 NXP----------EFXELSTRVSSMLEAIKLKKE 144

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 367 EAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
            +         E+    L     L  +  Q    ++A    +         ++    +G 
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 426 VHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484
                A G+ + A   Y     ++          AE  +  G   +A S L    +  A+
Sbjct: 64  CR--QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 485 DSLHVKLAQVFAATNMLQEALSHYEAA 511
                +L+      + + EA+   +  
Sbjct: 122 XPEFXELST---RVSSMLEAIKLKKEM 145

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 19/164 (11%)

Query: 360 LLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEALYAAREAMKAMP-Q 415
           LL +     A        E       L  Y+ +    L       A     E +   P +
Sbjct: 443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA--ELLTGDYDSATKHFTEVLDTFPGE 500

Query: 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475
            A  L L      +  +G     KFY++      G + AA  LA     EG    AV  L
Sbjct: 501 LAPKLALA---ATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557

Query: 476 ERYLKDWADDSLHVKLAQVFAATNML------QEALSHYEAALR 513
           +         S H   A++ +A  +L      +        A R
Sbjct: 558 DEVP----PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
           + E   +   +     +    + + +I   +M  +  YA     K    +       L  
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64

Query: 312 IDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
            D    +  + L ++   ++  + A      +  + +         G   L +K P  A 
Sbjct: 65  YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124

Query: 371 IAFRGAQELRPD 382
             F    +   D
Sbjct: 125 ECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 4/124 (3%)

Query: 376 AQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434
              +  D +       + +    +++EA    R        +   +  +  ++      +
Sbjct: 28  INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--IKEQ 85

Query: 435 -EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQ 493
            ++A   Y  A  L            +  +       A    E  ++   D+ L +K   
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

Query: 494 VFAA 497
              A
Sbjct: 146 YLDA 149

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 1/75 (1%)

Query: 309 LLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
           +L+       +   L     E +    AL +   ++  D  +   +   G  L       
Sbjct: 11  MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70

Query: 368 AAVIAFRGAQELRPD 382
            A  A+         
Sbjct: 71  GARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 8/97 (8%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393
                E  +     ++      G      ++ +AA+   R A +  P    +++ L  + 
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430
                   A  A    + A           GD     
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR-------GDQQVVK 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 313 DPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
           DP  P    AL     +  +   AL+  E+ +  D  ++  Y   G L   + R + A+ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 372 AFRGAQELRP---DLRSYQGLVHSYLQFSKVKEALY 404
            +    E+       +    L  + L+   ++   +
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 27/178 (15%)

Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
                  EL  E++Q  P   +   E A VD +        L+ +++ +++  I   +  
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP--LDEKQLAALNTEIDNIVT- 269

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV-LWERKDERGALSYAEKSIRIDE 347
                                L    +   ++   +V    +     +       I ++ 
Sbjct: 270 ---------------------LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405
             +  Y++ G +         A  A+  A  LRP   +    + + +  + V   +  
Sbjct: 309 SWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY-WIENGIFQTSVPYVVPY 364

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 20/175 (11%)

Query: 357 GNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLV--HSYL---QFSKVKEALYAAREAMK 411
            +L  ++ +P    +     + L             H YL       +  A     E ++
Sbjct: 168 ESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ 227

Query: 412 AMPQSAKALKLVGDVH-------ASNASGREKAKKFYESALRLEPGYLGAAL--ALAELH 462
           + P+   A      V          +           ++ + L      + +    A   
Sbjct: 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287

Query: 463 VIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
           +++G+  ++   +   +     W +   +V L +V+    M +EA   Y  A  L
Sbjct: 288 LVKGKTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNREAADAYLTAFNL 339

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 310 LSIDPSRPEVF----VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365
           + ++P+    F     A S L    +  GA+   E++I ID  +   Y   G  L S+ +
Sbjct: 39  IELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95

Query: 366 PEAAVIAFRGAQELRPD 382
              AV  ++ A EL PD
Sbjct: 96  HVEAVAYYKKALELDPD 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR 384
           + ++  +   ++   EK+I++D      ++MKG  L +++R E AV  +     +  D  
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74

Query: 385 SYQ-----GLVHSYLQFSKVKEALYAAREAMK 411
           +            Y++    +     A    K
Sbjct: 75  NKDVWAAKADALRYIE--GKEVEAEIAEARAK 104

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DLRSYQGLVH 391
           AL  A ++I +D+++I GY  +    +++ +  AA+  +    +++P   D +      +
Sbjct: 66  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125

Query: 392 SYLQFSKVKEALYAAREAMKAMPQ 415
             ++    + A+         +  
Sbjct: 126 KIVKQKAFERAIAGDEHKRSVVDS 149

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY---QGLVH 391
           A   AE +  +D ++   +   G     M   + A  A+    E   +  S    +GL  
Sbjct: 64  AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123

Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
           +  +  +         + +     +++    + D+ +
Sbjct: 124 TKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSS 160

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 33/222 (14%)

Query: 325 VLWERKDERGALSYAEKSIRIDERHIPG--------YIMKGNLLLSMKRPEAAVIAFRGA 376
           +L+ +   + A    EK+ ++                 ++  LL +  R + A  + R  
Sbjct: 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161

Query: 377 QELRPD------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430
            E+         L+    L+   L    +  A          +         + + +   
Sbjct: 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221

Query: 431 A-----SGR-EKAKKFYESALRLE----PGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
                 +G    A  +     + E        G    +A   ++ G    A  +LE  L 
Sbjct: 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE-LN 280

Query: 481 DWADDS--------LHVKLAQVFAATNMLQEALSHYEAALRL 514
           + A             + L Q++       +A      AL+L
Sbjct: 281 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%)

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL 394
           AL   E+ I+++   I GY  K   L +MK    A+  ++ A +L               
Sbjct: 69  ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS------------ 116

Query: 395 QFSKVKEALYAAREAMKAM 413
                KEA    +  M A 
Sbjct: 117 ----CKEAADGYQRCMMAQ 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.98
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.98
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.92
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.88
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.76
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.68
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	99.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.6
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.59
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.57
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.52
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.44
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.39
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.02
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.93
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.84
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.81
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.75
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.69
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.65
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.44
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.37
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.32
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.19
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.06
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	98.01
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.42
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.41
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.37
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.35
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.22
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.99
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.96
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.45
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.45
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.23
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.01
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.91
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.85
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.64
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.53
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.34
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.07
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.94
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.66
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.32
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.05
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.0
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.87
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.85
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.43
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.28
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.12
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.36
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.7

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.2e-47  Score=355.37  Aligned_cols=381  Identities=15%  Similarity=0.205  Sum_probs=363.8

Q ss_pred             HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHH
Q 010276           48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA  127 (514)
Q Consensus        48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  127 (514)
                      .+|..+++.|++++|+..|+++++.+|                               ++..++..++.++...|++++|
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p-------------------------------~~~~~~~~l~~~~~~~~~~~~a   52 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEP-------------------------------DNTGVLLLLSSIHFQCRRLDRS   52 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHH
Confidence            468899999999999999999999987                               4556677888899999999999


Q ss_pred             HHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276          128 IVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP  206 (514)
Q Consensus       128 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  206 (514)
                      ...++.. ...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+                         
T Consensus        53 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------  107 (388)
T 1w3b_A           53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL-------------------------  107 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------
Confidence            9999884 44588999999999999999999999999999999999998888766                         


Q ss_pred             CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 010276          207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM  286 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  286 (514)
                                     |.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++
T Consensus       108 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  172 (388)
T 1w3b_A          108 ---------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             ---------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ---------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence                           88889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276          287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR  365 (514)
Q Consensus       287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      ..+|.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..+++++..+|+++.++..+|.++...|+
T Consensus       173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  252 (388)
T 1w3b_A          173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276          366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA  444 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  444 (514)
                      +++|+..|+++++..|++ .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a  331 (388)
T 1w3b_A          253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            999999999999999997 78999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      ++..|+++.++..+|.++...|++++|+..|+++++..|+.. ++..+|.++..+|+
T Consensus       332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            999999999999999999999999999999999999999875 99999999988874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-46  Score=370.36  Aligned_cols=467  Identities=16%  Similarity=0.135  Sum_probs=387.3

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccccc--ccCChhHHHHHHHHHH
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV--SAINENEVKYKIASCH  118 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~la~~~  118 (514)
                      ..+..+..++..+.+.|++++|+..|++++...|+. ..+..++.++...|+..+|...+..  ..+.++.++..++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  160 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL  160 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            456788999999999999999999999999999955 5567789999999999999988843  3567888999999999


Q ss_pred             HhcCCHHHHHHHHhcC-CCC----------------CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276          119 FALGETKAAIVEMEGI-PSK----------------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL  181 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~-~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  181 (514)
                      .+.|++++|+..++++ +..                +.+..+++.+|.+|.+.|++++|+..|+++++.+|++..++..+
T Consensus       161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  240 (597)
T 2xpi_A          161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL  240 (597)
T ss_dssp             HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            9999999999999964 332                34688999999999999999999999999999999999999999


Q ss_pred             HHhccCcccHhHHHhccCCcCCCCCCCcCCchh-HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 010276          182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSR-WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDA  260 (514)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  260 (514)
                      +.++...+................   ..++.. ...+...+..+...|++++|+..|+++++. |.++.++..++.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          241 VSNHLLTADEEWDLVLKLNYSTYS---KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHTTCSCHHHHHHHHHHSCTHHHH---GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred             HHhhcccchhHHHHHHhcCCcccc---cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence            887665543322221111000000   000000 011112245566778889999999888776 677888889999999


Q ss_pred             HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHH
Q 010276          261 IIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYA  339 (514)
Q Consensus       261 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~  339 (514)
                      ..|++++|+..|+++++.+|.+..++..++.++...|++++|...+++++...|+++.++..++.++.. |++++|+..|
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  396 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF  396 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999999999999988888888888899999999999999999999888888888888888888877 8899999999


Q ss_pred             HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276          340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK  418 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  418 (514)
                      +++++..|.+..+|..+|.++...|++++|+..|+++++..|++ .++..++.++...|++++|+..|+++++..|+++.
T Consensus       397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  476 (597)
T 2xpi_A          397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL  476 (597)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99998888888888999999999999999999999998888876 78888899999999999999999999998898888


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHH
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRL------EPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVK  490 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~  490 (514)
                      ++..+|.++... |++++|+..|+++++.      +|++ ..++..+|.++...|++++|+..++++++..|++ .++..
T Consensus       477 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  555 (597)
T 2xpi_A          477 LLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA  555 (597)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            999999999888 9999999999998887      5554 6788889999999999999999999999888876 48888


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhc
Q 010276          491 LAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       491 l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +|.+|...|++++|.++|+++++
T Consensus       556 l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          556 IALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999988875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.3e-45  Score=341.20  Aligned_cols=383  Identities=18%  Similarity=0.150  Sum_probs=360.4

Q ss_pred             HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276            5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS   84 (514)
Q Consensus         5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   84 (514)
                      ++....++..|+++.|+.....++...        +..+..+..+|.+++..|++++|+..++++++.+|          
T Consensus         3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p----------   64 (388)
T 1w3b_A            3 MELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----------   64 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred             hhHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Confidence            456788899999999999988877642        23356889999999999999999999999999977          


Q ss_pred             hhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276           85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC  163 (514)
Q Consensus        85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  163 (514)
                                           .+..+++.+|.++...|++++|+..++++ ...|.++.++..+|.++...|++++|+..
T Consensus        65 ---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  123 (388)
T 1w3b_A           65 ---------------------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             ---------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 55677888999999999999999999995 44588999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276          164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ  243 (514)
Q Consensus       164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  243 (514)
                      |+++++.+|++..++..+                                        |.++...|++++|+..|++++.
T Consensus       124 ~~~al~~~p~~~~~~~~l----------------------------------------~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A          124 YVSALQYNPDLYCVRSDL----------------------------------------GNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHCTTCTHHHHHH----------------------------------------HHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHH----------------------------------------HHHHHHccCHHHHHHHHHHHHH
Confidence            999999999988887666                                        8888889999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276          244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                      .+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus       164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  243 (388)
T 1w3b_A          164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL  243 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHH
Q 010276          324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  401 (514)
                      |.++.. |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++
T Consensus       244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence            999888 999999999999999999999999999999999999999999999999999988 889999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      |+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus       324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          324 AVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999999999999998 999999999999999999999999999999988774

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-44  Score=356.39  Aligned_cols=475  Identities=11%  Similarity=0.026  Sum_probs=402.4

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      +...+..+...|+++.|..+...++...+         +...++.+|.++...|++++|+..|++++.. |.++..+..+
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l  156 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLA  156 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHhhCC---------CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHH
Confidence            45667788899999999999888775332         2257788999999999999999999998765 6778888999


Q ss_pred             hhhhhhccccCCCCcccccccCC-------------------hhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHH
Q 010276           84 SRSSLSTSNRSSSPNSFNVSAIN-------------------ENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQM  143 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~  143 (514)
                      +.++...|+.++|...|....+.                   +..+++.+|.++...|++++|+..|+++. ..|.++.+
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  236 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA  236 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence            99999999999999888633333                   47889999999999999999999999963 44888888


Q ss_pred             HHHHHHHHHhcCChhhHHHH---HHHHHhcCCCCHH-HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276          144 SLLMAKLYRNSRHNRGAVAC---YKECLRHCPFFIE-AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY  219 (514)
Q Consensus       144 ~~~l~~~~~~~g~~~~A~~~---~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (514)
                      +..++.++...+....+...   +.+....+|.... .+..++..+...++..++..........       +.+.....
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~  309 (597)
T 2xpi_A          237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDLLL  309 (597)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHHHH
Confidence            88888776655443332221   2222222221111 1122233444455554444444333221       23344455


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      .++..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|.+..++..++.++...|++
T Consensus       310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  389 (597)
T 2xpi_A          310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI  389 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence            66999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276          300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                      ++|+..|+++++..|.++.++..++.++.. |++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999888 9999999999999999999999999999999999999999999999999


Q ss_pred             hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          379 LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       379 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      ..|++ .+|..+|.++...|++++|+..|+++++.      .|++ ..++..+|.++... |++++|+..|+++++.+|+
T Consensus       470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSC
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCC
Confidence            99987 78999999999999999999999999998      5665 78999999999998 9999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHH
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA  496 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~  496 (514)
                      ++.++..++.++...|++++|...++++++..|++. ++..++.+|.
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999985 8888888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-41  Score=325.27  Aligned_cols=418  Identities=14%  Similarity=0.083  Sum_probs=359.1

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      ...++.++.+|..++..|+|++|+..|++++..+|                                ++.+++.+|.++.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~la~~~~   50 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE--------------------------------DPVFYSNLSACYV   50 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--------------------------------CHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--------------------------------cHHHHHhHHHHHH
Confidence            35678999999999999999999999999999976                                2457788999999


Q ss_pred             hcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276          120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT  198 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  198 (514)
                      ..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|++++...|.+......+..............+..
T Consensus        51 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  130 (514)
T 2gw1_A           51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF  130 (514)
T ss_dssp             HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999995 4458999999999999999999999999999999999866544332222111111110000000


Q ss_pred             -------------------------------------CCcCCC--CCCCcCCchhHHhHHHHHHHHHH---hcCHHHHHH
Q 010276          199 -------------------------------------PNRSGR--APFDHLDSSRWLHRYVEAQCCIA---SNDYKGGLE  236 (514)
Q Consensus       199 -------------------------------------~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~  236 (514)
                                                           ......  .......+......+..|.+++.   .|++++|+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  210 (514)
T 2gw1_A          131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE  210 (514)
T ss_dssp             --------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred             HHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence                                                 000000  00111124445566777888876   899999999


Q ss_pred             HHHHHHH-----h--C-------CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276          237 LFAELLQ-----R--F-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL  302 (514)
Q Consensus       237 ~~~~~~~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  302 (514)
                      .++++++     .  .       |.++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A  289 (514)
T 2gw1_A          211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY  289 (514)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred             HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence            9999998     4  3       455789999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276          303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP  381 (514)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  381 (514)
                      +..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  369 (514)
T 2gw1_A          290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP  369 (514)
T ss_dssp             GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999888 9999999999999999999999999999999999999999999999999999


Q ss_pred             Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh---cCCChHHHHHHHHHHHhhCCCC
Q 010276          382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK------ALKLVGDVHAS---NASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ++ .++..+|.++...|++++|+..+++++...|+++.      ++..+|.++..   . |++++|+..|++++..+|++
T Consensus       370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTTC
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCccc
Confidence            87 88999999999999999999999999999998855      99999999999   8 99999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHH
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKL  491 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l  491 (514)
                      +.++..+|.++...|++++|+..++++++..|++. ++..+
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            99999999999999999999999999999999974 44433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.5e-40  Score=325.78  Aligned_cols=414  Identities=15%  Similarity=0.102  Sum_probs=306.7

Q ss_pred             hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276           40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF  119 (514)
Q Consensus        40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  119 (514)
                      ...++.++.+|..++..|+|++|+..|++++..+|                               +++.+++.+|.++.
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------------~~~~~~~~la~~~~   70 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-------------------------------NEPVFYSNISACYI   70 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-------------------------------CCcHHHHHHHHHHH
Confidence            34678999999999999999999999999999987                               44567778888888


Q ss_pred             hcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276          120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT  198 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  198 (514)
                      ..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+ ++..+|+....+................+...
T Consensus        71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  149 (537)
T 3fp2_A           71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNEN  149 (537)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988884 4458888889999999999999999999885 77777766554421100000001111111111


Q ss_pred             CCcCCCCC----------------------------CCcCCchhHHhHHHHHHHHHH--------hcCHHHHHHHHHHHH
Q 010276          199 PNRSGRAP----------------------------FDHLDSSRWLHRYVEAQCCIA--------SNDYKGGLELFAELL  242 (514)
Q Consensus       199 ~~~~~~~~----------------------------~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~  242 (514)
                      ........                            ....++.........+..+..        .|++++|+..+++++
T Consensus       150 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l  229 (537)
T 3fp2_A          150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL  229 (537)
T ss_dssp             CC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            11100000                            000111111111112222211        247888888999988


Q ss_pred             HhCCCcHH-------HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC
Q 010276          243 QRFPNNIH-------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS  315 (514)
Q Consensus       243 ~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  315 (514)
                      +.+|+++.       ++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++...|+
T Consensus       230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  308 (537)
T 3fp2_A          230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE  308 (537)
T ss_dssp             C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred             HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence            88888755       4677788888888999999999999999888 888888999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276          316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY  393 (514)
Q Consensus       316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~  393 (514)
                      ++.++..+|.++.. |++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  388 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL  388 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999888877 889999999999999999888889999999999999999999999999988887 7888889999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHhcC---------CChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSAKA------LKLVGDVHASNA---------SGREKAKKFYESALRLEPGYLGAALAL  458 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l  458 (514)
                      ...|++++|+..+++++...|++...      +..+|.++....         |++++|+..|+++++.+|+++.++..+
T Consensus       389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  468 (537)
T 3fp2_A          389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL  468 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999998887765433      455566666531         788899999999999999988899999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          459 AELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      |.++...|++++|+..|+++++..|+..
T Consensus       469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          469 AQLKLQMEKIDEAIELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            9999999999999999999999888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=315.89  Aligned_cols=366  Identities=16%  Similarity=0.149  Sum_probs=333.7

Q ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276          106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG  185 (514)
Q Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  185 (514)
                      ...+.++.+|.+++..|++++|+..++++.....++.++..+|.++...|++++|+..|+++++.+|++..++..+    
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----   79 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRR----   79 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHH----
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHH----
Confidence            3567889999999999999999999999644323789999999999999999999999999999999999988777    


Q ss_pred             cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------
Q 010276          186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP-------------------  246 (514)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------------------  246 (514)
                                                          |.++...|++++|+..|++++...|                   
T Consensus        80 ------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (514)
T 2gw1_A           80 ------------------------------------ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM  123 (514)
T ss_dssp             ------------------------------------HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Confidence                                                5556666666666666666655543                   


Q ss_pred             ------------------------------------------------------------CcHHHHHHHHHHHHH---hC
Q 010276          247 ------------------------------------------------------------NNIHILLEMAKVDAI---IG  263 (514)
Q Consensus       247 ------------------------------------------------------------~~~~~~~~la~~~~~---~~  263 (514)
                                                                                  +++..+..+|.++..   .|
T Consensus       124 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (514)
T 2gw1_A          124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE  203 (514)
T ss_dssp             HHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred             HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence                                                                        337778888888886   89


Q ss_pred             ChHHHHHHHHHHHh-----h--C-------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          264 KNDEAILNFEKVRS-----I--D-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       264 ~~~~A~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      ++++|+..|+++++     .  +       |.++.++..+|.++...|++++|+..+++++...|. +.++..+|.++..
T Consensus       204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~  282 (514)
T 2gw1_A          204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD  282 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence            99999999999999     5  3       445678999999999999999999999999999999 9999999999888


Q ss_pred             -cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       330 -~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                       |++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++|+..++
T Consensus       283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  362 (514)
T 2gw1_A          283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS  362 (514)
T ss_dssp             SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999987 889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH------HHHHHHHHHHH---cCChhHHHHHHHHH
Q 010276          408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVI---EGRNGDAVSLLERY  478 (514)
Q Consensus       408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~~  478 (514)
                      +++...|+++.++..+|.++... |++++|+..|+++++..|+++.      ++..+|.++..   .|++++|+..++++
T Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          363 EAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHSTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            99999999999999999999998 9999999999999999988865      99999999999   99999999999999


Q ss_pred             HhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          479 LKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       479 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ++..|++. ++..+|.++...|++++|...|+++++
T Consensus       442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999875 999999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=6.1e-38  Score=300.06  Aligned_cols=360  Identities=15%  Similarity=0.145  Sum_probs=325.7

Q ss_pred             CChhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276          105 INENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE  183 (514)
Q Consensus       105 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  183 (514)
                      |++..+++.+|.++...|++++|+..++++. ..|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+  
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR--  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH--
Confidence            4678889999999999999999999999954 3588999999999999999999999999999999999988887666  


Q ss_pred             hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHH-----
Q 010276          184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEM-----  255 (514)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l-----  255 (514)
                                                            |.++...|++++|+..|++++..+|+++   .++..+     
T Consensus       101 --------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  142 (450)
T 2y4t_A          101 --------------------------------------GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE  142 (450)
T ss_dssp             --------------------------------------HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence                                                  8888999999999999999999999988   776655     


Q ss_pred             -------HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          256 -------AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       256 -------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                             |.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  222 (450)
T 2y4t_A          143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY  222 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                   6669999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             h-cChhHHHHHHHHHHHhcccCchhHHHH------------HHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHH
Q 010276          329 R-KDERGALSYAEKSIRIDERHIPGYIMK------------GNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLV  390 (514)
Q Consensus       329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~  390 (514)
                      . |++++|+..+++++...|+++..+..+            |.++...|++++|+..|+++++..|++     ..+..+|
T Consensus       223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~  302 (450)
T 2y4t_A          223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC  302 (450)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            8 999999999999999999998887666            999999999999999999999999985     3688999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH---------
Q 010276          391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL---------  461 (514)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~---------  461 (514)
                      .++...|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.++..++.+         
T Consensus       303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  381 (450)
T 2y4t_A          303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK  381 (450)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999998 999999999999999999999999999955         


Q ss_pred             ---HHHcC-----ChhHHHHHHHH-HHhhCCCc-----------hHHHHHHHHHHHhccHHHHH
Q 010276          462 ---HVIEG-----RNGDAVSLLER-YLKDWADD-----------SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       462 ---~~~~g-----~~~~A~~~~~~-~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~  505 (514)
                         |...|     +.+++.+.|++ +++..|+.           ..+..++.+|..+|+.+++.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence               33445     56778888987 77777763           15667788888888876654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=3.6e-37  Score=294.72  Aligned_cols=343  Identities=16%  Similarity=0.155  Sum_probs=307.4

Q ss_pred             HHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCC
Q 010276          127 AIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA  205 (514)
Q Consensus       127 A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  205 (514)
                      +...+.. +...|.++..++.+|..+...|++++|+..|+++++.+|.+..++..+                        
T Consensus        11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------------------------   66 (450)
T 2y4t_A           11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR------------------------   66 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH------------------------
Confidence            3344444 455689999999999999999999999999999999999988888666                        


Q ss_pred             CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH--
Q 010276          206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM--  283 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--  283 (514)
                                      |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.  
T Consensus        67 ----------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  130 (450)
T 2y4t_A           67 ----------------ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE  130 (450)
T ss_dssp             ----------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred             ----------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Confidence                            88899999999999999999999999999999999999999999999999999999999988  


Q ss_pred             -HHHHHH------------HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276          284 -TYMDEY------------AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       284 -~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~  349 (514)
                       .++..+            |.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++.+|.+
T Consensus       131 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  210 (450)
T 2y4t_A          131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN  210 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence             776655            6669999999999999999999999999999999999888 99999999999999999999


Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL------------VHSYLQFSKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~  416 (514)
                      +.++..+|.++...|++++|+..|++++...|++ ..+..+            |.++...|++++|+..|++++...|++
T Consensus       211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  290 (450)
T 2y4t_A          211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI  290 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999987 445444            999999999999999999999999998


Q ss_pred             HH----HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHH
Q 010276          417 AK----ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKL  491 (514)
Q Consensus       417 ~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l  491 (514)
                      +.    .+..+|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++. ++..+
T Consensus       291 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  369 (450)
T 2y4t_A          291 AEYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL  369 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            54    788999999998 9999999999999999999999999999999999999999999999999999975 88888


Q ss_pred             HHH------------HHHhc-----cHHHHHHHHHH
Q 010276          492 AQV------------FAATN-----MLQEALSHYEA  510 (514)
Q Consensus       492 ~~~------------~~~~g-----~~~~A~~~~~~  510 (514)
                      +.+            |..+|     +.+++.+.|++
T Consensus       370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence            854            44444     45566777775

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=279.69  Aligned_cols=320  Identities=16%  Similarity=0.144  Sum_probs=279.0

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276          140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY  219 (514)
Q Consensus       140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (514)
                      +++.++.+|.++...|++++|+..|+++++.+|.++.++..+                                      
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~--------------------------------------   43 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR--------------------------------------   43 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------------------------------------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH--------------------------------------
Confidence            467788888888888888888888888888888887777655                                      


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHH-------
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTYMDEY-------  289 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l-------  289 (514)
                        |.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|   .+..++..+       
T Consensus        44 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (359)
T 3ieg_A           44 --ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ  121 (359)
T ss_dssp             --HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence              77788888888888888888888888888888888888888888888888888888888   777777666       


Q ss_pred             -----HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276          290 -----AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM  363 (514)
Q Consensus       290 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                           |.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...
T Consensus       122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  201 (359)
T 3ieg_A          122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL  201 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                 6888899999999999999999999999999999988887 9999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhHhhcCCh-HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Q 010276          364 KRPEAAVIAFRGAQELRPDL-RSY------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK----ALKLVGDV  426 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~  426 (514)
                      |++++|+..++++++..|+. .++            ..+|.++...|++++|+..+++++...|+++.    .+..+|.+
T Consensus       202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  281 (359)
T 3ieg_A          202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC  281 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            99999999999999998887 332            24488899999999999999999999999874    45678999


Q ss_pred             HHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       427 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      +... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++. ++..++.++..+++
T Consensus       282 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          282 FSKD-EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHc-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9998 9999999999999999999999999999999999999999999999999999875 88888888776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.3e-36  Score=297.67  Aligned_cols=408  Identities=12%  Similarity=0.032  Sum_probs=331.4

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      .++.....++..|+|+.|+.....++...+        ..+.+++.+|.+++..|++++|+..|+++++.+|+++..+..
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   98 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--------NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR   98 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence            356778889999999999999998887532        345789999999999999999999999999999988877777


Q ss_pred             hhhhhhhccccCCCCcccccc--cCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------------
Q 010276           83 SSRSSLSTSNRSSSPNSFNVS--AINENEVKYKIASCHFALGETKAAIVEMEGIPS------------------------  136 (514)
Q Consensus        83 ~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------------  136 (514)
                      ++.++...|+.++|...+...  .|+.....   ...+...+...+|+..++.+..                        
T Consensus        99 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  175 (537)
T 3fp2_A           99 RASANESLGNFTDAMFDLSVLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD  175 (537)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence            777777777777666655221  11111111   1122222233334433333211                        


Q ss_pred             -------------C-CccHHHHHHHHHHHH--------hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276          137 -------------K-ARNLQMSLLMAKLYR--------NSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL  194 (514)
Q Consensus       137 -------------~-~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~  194 (514)
                                   . +........++.++.        ..|++++|+..|+++++.+|++...+..++..          
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~----------  245 (537)
T 3fp2_A          176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA----------  245 (537)
T ss_dssp             HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH----------
T ss_pred             hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH----------
Confidence                         1 111223333333332        33588999999999999999988877655433          


Q ss_pred             HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276          195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK  274 (514)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  274 (514)
                                             ++.+|.++...|++++|+..+++++..+|+ +.++..+|.++...|++++|+..+++
T Consensus       246 -----------------------~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  301 (537)
T 3fp2_A          246 -----------------------LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK  301 (537)
T ss_dssp             -----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                                   345689999999999999999999999999 89999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH
Q 010276          275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY  353 (514)
Q Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~  353 (514)
                      +++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|.++.++
T Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  381 (537)
T 3fp2_A          302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP  381 (537)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999999999999999999999999999999888 999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCC
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQF----------SKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~  416 (514)
                      ..+|.++...|++++|+..|+++++..|+.       ..+..+|.++...          |++++|+..++++++.+|++
T Consensus       382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  461 (537)
T 3fp2_A          382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS  461 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987654       2367778999999          99999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      +.++..+|.++... |++++|+..|+++++++|+.+....
T Consensus       462 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          462 EQAKIGLAQLKLQM-EKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999 9999999999999999999877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.7e-37  Score=294.23  Aligned_cols=384  Identities=13%  Similarity=0.035  Sum_probs=296.7

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH  118 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~  118 (514)
                      ....+..+..+|.++...|++++|+++|++|+++.+.....                      ...+....++..+|.+|
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~----------------------~~~~~~~~~~~nla~~y  104 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD----------------------QAEIRSLVTWGNYAWVY  104 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG----------------------GCTTTTHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc----------------------ccchHHHHHHHHHHHHH
Confidence            44556788899999999999999999999999885432110                      01224456678899999


Q ss_pred             HhcCCHHHHHHHHhcCC---------CCCccHHHHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC
Q 010276          119 FALGETKAAIVEMEGIP---------SKARNLQMSLLMAKLYRNS--RHNRGAVACYKECLRHCPFFIEAITALAELGAT  187 (514)
Q Consensus       119 ~~~g~~~~A~~~~~~~~---------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  187 (514)
                      ..+|++++|+..++++.         ..+..+.++..+|.++...  +++++|+.+|+++++.+|+++.++..++.+   
T Consensus       105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~---  181 (472)
T 4g1t_A          105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA---  181 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH---
T ss_pred             HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Confidence            99999999998887631         1245678888888776654  579999999999999999999998776333   


Q ss_pred             cccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----C
Q 010276          188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----G  263 (514)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~  263 (514)
                                                        ...+...+++++|++.++++++.+|+++.++..+|..+...    |
T Consensus       182 ----------------------------------~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~  227 (472)
T 4g1t_A          182 ----------------------------------SYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGE  227 (472)
T ss_dssp             ----------------------------------HHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----
T ss_pred             ----------------------------------HHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhh
Confidence                                              22234558889999999999999999999998888776654    6


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--------------
Q 010276          264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--------------  329 (514)
Q Consensus       264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------  329 (514)
                      ++++|..++++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++..              
T Consensus       228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~  307 (472)
T 4g1t_A          228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY  307 (472)
T ss_dssp             --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999999988753              


Q ss_pred             ------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH----HHHHHHHH-HHhcCC
Q 010276          330 ------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHS-YLQFSK  398 (514)
Q Consensus       330 ------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~~~~~~  398 (514)
                            +.+++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|++.    .+..+|.+ ....|+
T Consensus       308 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (472)
T 4g1t_A          308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC  387 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence                  3356889999999999999999999999999999999999999999999988762    35566654 457899


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      +++|+..|++++++.|++....           +....+...+++++..+|+++.++..+|.++...|++++|+++|+++
T Consensus       388 ~~~Ai~~y~kal~i~~~~~~~~-----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA  456 (472)
T 4g1t_A          388 EDKAIHHFIEGVKINQKSREKE-----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG  456 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCHHHH-----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999875432           33455667788899999999999999999999999999999999999


Q ss_pred             HhhCCCch-HHHHHH
Q 010276          479 LKDWADDS-LHVKLA  492 (514)
Q Consensus       479 ~~~~~~~~-~~~~l~  492 (514)
                      ++..|..+ +...+|
T Consensus       457 Le~~~~~p~a~~~~G  471 (472)
T 4g1t_A          457 LESGSLIPSASSWNG  471 (472)
T ss_dssp             ---------------
T ss_pred             HhcCCCCCcHhhcCC
Confidence            99888764 555555

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.2e-35  Score=275.21  Aligned_cols=320  Identities=14%  Similarity=0.131  Sum_probs=298.9

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276          107 ENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG  185 (514)
Q Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  185 (514)
                      +++.++.+|.++...|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+    
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR----   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH----
Confidence            4678899999999999999999999995 44588999999999999999999999999999999999998887665    


Q ss_pred             cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHH-------
Q 010276          186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEM-------  255 (514)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l-------  255 (514)
                                                          |.++...|++++|+..++++++..|   +++.++..+       
T Consensus        78 ------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (359)
T 3ieg_A           78 ------------------------------------GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ  121 (359)
T ss_dssp             ------------------------------------HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence                                                8889999999999999999999999   888888777       


Q ss_pred             -----HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276          256 -----AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-  329 (514)
Q Consensus       256 -----a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  329 (514)
                           |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. 
T Consensus       122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  201 (359)
T 3ieg_A          122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL  201 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                 79999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             cChhHHHHHHHHHHHhcccCchhHH------------HHHHHHHhcCChHHHHHHHHHhHhhcCChH-----HHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYI------------MKGNLLLSMKRPEAAVIAFRGAQELRPDLR-----SYQGLVHS  392 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~  392 (514)
                      |++++|+..++++++..|+++..+.            .+|.++...|++++|+..++++++..|++.     .+..+|.+
T Consensus       202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  281 (359)
T 3ieg_A          202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC  281 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999887654            448889999999999999999999999862     36679999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      +...|++++|+..++++++.+|+++.++..+|.++... |++++|+..|+++++++|+++.++..++.+....++
T Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE-EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 999999999999999999999999999988776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=276.43  Aligned_cols=345  Identities=14%  Similarity=0.070  Sum_probs=223.6

Q ss_pred             CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      +.....+..+|.++..+|++++|+..|++++++.+...                               ....++.....
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-------------------------------~~~~~~~~~~~   96 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH-------------------------------ADQAEIRSLVT   96 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-------------------------------GGGCTTTTHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-------------------------------ccccchHHHHH
Confidence            44567788999999999999999999999987632100                               00011222223


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMD  287 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~  287 (514)
                      +..+|.++...|++++|+..+++++..        .+..+.++..+|.++...|  ++++|+.+|+++++++|+++.++.
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~  176 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS  176 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            334477777777777777777777653        2334566666666665543  567777777777777777777777


Q ss_pred             HHHHHHHH---hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276          288 EYAMLLKV---KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNL  359 (514)
Q Consensus       288 ~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      .++.++..   .++.++|++.++++++++|+++.++..+|..+..     +++++|..++++++..+|..+.++..+|.+
T Consensus       177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~  256 (472)
T 4g1t_A          177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF  256 (472)
T ss_dssp             HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            76666443   3555677777777777777777777766655443     566677777777777777777777777777


Q ss_pred             HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF-------------------SKVKEALYAAREAMKAMPQSAKA  419 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~p~~~~~  419 (514)
                      +...|++++|+..|+++++..|++ .++..+|.+|...                   +.+++|+..+++++..+|.+..+
T Consensus       257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  336 (472)
T 4g1t_A          257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV  336 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred             HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence            777777777777777777777776 5666666666432                   23566777777777777777777


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH---HHHHHHHHH-HHcCChhHHHHHHHHHHhhC-------------
Q 010276          420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLG---AALALAELH-VIEGRNGDAVSLLERYLKDW-------------  482 (514)
Q Consensus       420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~-~~~g~~~~A~~~~~~~~~~~-------------  482 (514)
                      +..+|.++... |++++|+.+|+++++.+|++..   ++..+|.+. ...|++++|+..|++++++.             
T Consensus       337 ~~~lg~~~~~~-~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l  415 (472)
T 4g1t_A          337 CSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL  415 (472)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHh-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            77777777776 7777777777777777665433   344455433 45667777777777766654             


Q ss_pred             -----------CCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          483 -----------ADD-SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       483 -----------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                                 |++ .++..+|.+|...|++++|+++|++|+++
T Consensus       416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                       444 48999999999999999999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=260.02  Aligned_cols=284  Identities=15%  Similarity=0.119  Sum_probs=197.5

Q ss_pred             CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      +.++..+..+|..+...|++++|+..|+++++.+|.+..++..+                                    
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------------------------------------   62 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH------------------------------------   62 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH------------------------------------
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH------------------------------------
Confidence            55666677777777777777777777777777777665554433                                    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                          +.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|+++++.+|.++.++..+|.++...
T Consensus        63 ----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  138 (330)
T 3hym_B           63 ----IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE  138 (330)
T ss_dssp             ----HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence                566667777777777777777777777777777777777777 777777777777777777777777777777777


Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG  375 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  375 (514)
                      |++++|+..+++++...|++...+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus       139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  218 (330)
T 3hym_B          139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD  218 (330)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            777777777777777777777777667766666 7777777777777777777767777777777777777777777777


Q ss_pred             hHhhc---------CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          376 AQELR---------PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       376 ~~~~~---------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +++..         |.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+.+|++++
T Consensus       219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  297 (330)
T 3hym_B          219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTT
T ss_pred             HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            76654         222 45666666666666666666666666666666666666666666666 66666666666666


Q ss_pred             hhCCCChHHHHHHHHHH
Q 010276          446 RLEPGYLGAALALAELH  462 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~  462 (514)
                      +++|+++.++..++.++
T Consensus       298 ~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          298 GLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             TTCSCCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHH
Confidence            66666666666666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=256.57  Aligned_cols=284  Identities=13%  Similarity=0.050  Sum_probs=270.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      .+..|..++..|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus        25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (330)
T 3hym_B           25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG  104 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276          298 -DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG  375 (514)
Q Consensus       298 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  375 (514)
                       ++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.+...+..+|.++...|++++|+..+++
T Consensus       105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             99999999999999999999999999999888 9999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM---------PQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      +++..|++ .++..+|.++...|++++|+..+++++...         |..+.++..+|.++... |++++|+..|++++
T Consensus       185 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~  263 (330)
T 3hym_B          185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQAL  263 (330)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence            99999998 889999999999999999999999999986         66788999999999998 99999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH-HHhccHH
Q 010276          446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF-AATNMLQ  502 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~-~~~g~~~  502 (514)
                      +.+|+++.++..+|.++...|++++|+..++++++..|++. ++..++.++ ...|+.+
T Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999999999999999999999875 999999988 5666653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=4.7e-34  Score=265.49  Aligned_cols=287  Identities=18%  Similarity=0.112  Sum_probs=220.6

Q ss_pred             HHHhcCHHHHHH-HHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          225 CIASNDYKGGLE-LFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       225 ~~~~~~~~~A~~-~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      +...|++++|+. .+++++...|+++    ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence            334466666666 6666666555543    34666677777777777777777777777777766777777777777777


Q ss_pred             hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH----------------HHHHHHHh
Q 010276          300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----------------MKGNLLLS  362 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  362 (514)
                      ++|+..+++++...|+++.++..+|.++.. |++++|+..+++++...|.+...+.                .++.++ .
T Consensus       115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  193 (368)
T 1fch_A          115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S  193 (368)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence            777777777777777777777777666666 6677777777777776666655554                466666 8


Q ss_pred             cCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 010276          363 MKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK  439 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~  439 (514)
                      .|++++|+..|+++++..|+  . .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHHH
Confidence            89999999999999999988  4 77889999999999999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHhccHHHHHHH
Q 010276          440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEALSH  507 (514)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~  507 (514)
                      .|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++            .++..+|.++..+|++++|..+
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            9999999999999999999999999999999999999999988765            4889999999999999999988


Q ss_pred             HHHHhc
Q 010276          508 YEAALR  513 (514)
Q Consensus       508 ~~~al~  513 (514)
                      ++++++
T Consensus       353 ~~~~l~  358 (368)
T 1fch_A          353 DARDLS  358 (368)
T ss_dssp             HTTCHH
T ss_pred             HHHHHH
Confidence            887664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=4.8e-33  Score=258.71  Aligned_cols=295  Identities=15%  Similarity=0.078  Sum_probs=261.0

Q ss_pred             HHHhcCChhhHHH-HHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHh
Q 010276          150 LYRNSRHNRGAVA-CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS  228 (514)
Q Consensus       150 ~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (514)
                      ++...|++++|+. .|++++...|.++..                                    .....+.+|..+...
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~   77 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLR------------------------------------DHPQPFEEGLRRLQE   77 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTT------------------------------------TCSSHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCccc------------------------------------chHHHHHHHHHHHHC
Confidence            4556688888888 888888877754311                                    111234569999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  308 (514)
                      |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++
T Consensus        78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD  157 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCChHHHH----------------HHHHHHhhcChhHHHHHHHHHHHhccc--CchhHHHHHHHHHhcCChHHHH
Q 010276          309 LLSIDPSRPEVFV----------------ALSVLWERKDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSMKRPEAAV  370 (514)
Q Consensus       309 ~~~~~~~~~~~~~----------------~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~  370 (514)
                      ++...|.++..+.                .++.++..|++++|+..+++++..+|.  ++.++..+|.++...|++++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~  237 (368)
T 1fch_A          158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV  237 (368)
T ss_dssp             HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999887765                466777559999999999999999999  7899999999999999999999


Q ss_pred             HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      ..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|++++++.|
T Consensus       238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC
Confidence            9999999999997 88999999999999999999999999999999999999999999999 999999999999999998


Q ss_pred             CC-----------hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          450 GY-----------LGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       450 ~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ++           +.++..+|.++...|++++|..+++++++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            88           889999999999999999999998877654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=3.6e-30  Score=248.09  Aligned_cols=381  Identities=13%  Similarity=0.092  Sum_probs=330.0

Q ss_pred             hhHHHHHHHHhhHhh----hhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHH
Q 010276           41 LKAENLIILGDSLFR----DREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS  116 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~  116 (514)
                      ..+++++.+|..|+.    .+++++|+.+|+++++.                                 .++++.+.+|.
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~   83 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---------------------------------GYTPAEYVLGL   83 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHH
Confidence            457899999999999    89999999999999876                                 55678889999


Q ss_pred             HHHh----cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          117 CHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       117 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      +|..    .+++++|+..+++... ..++.+++.+|.+|..    .+++++|+..|+++.+.  .++.++..+       
T Consensus        84 ~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------  153 (490)
T 2xm6_A           84 RYMNGEGVPQDYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM-------  153 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH-------
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH-------
Confidence            9998    9999999999998533 3588999999999998    88999999999999875  456666555       


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI---  261 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---  261 (514)
                                                       |.++..    .+++++|+.+|+++.+.  .++.+++.+|.+|..   
T Consensus       154 ---------------------------------g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g  198 (490)
T 2xm6_A          154 ---------------------------------GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG  198 (490)
T ss_dssp             ---------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             ---------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Confidence                                             666665    68999999999999876  578999999999999   


Q ss_pred             -hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cC
Q 010276          262 -IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KD  331 (514)
Q Consensus       262 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~  331 (514)
                       .+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+++++.+.  .++.+++.+|.++..     ++
T Consensus       199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d  274 (490)
T 2xm6_A          199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE  274 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC
T ss_pred             CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC
Confidence             89999999999999875  468899999999997    89999999999999875  678899999998876     78


Q ss_pred             hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc-----CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC---CHHHHH
Q 010276          332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-----KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS---KVKEAL  403 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~  403 (514)
                      +++|+.+|+++.+.  .++.+++.+|.++...     +++++|+..|+++.+.. +..+++.+|.+|...|   ++++|+
T Consensus       275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~  351 (490)
T 2xm6_A          275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAV  351 (490)
T ss_dssp             HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHH
Confidence            89999999999865  5678999999999988     99999999999998863 3378999999999866   899999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHH
Q 010276          404 YAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLL  475 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~  475 (514)
                      .+|+++++.  .++.+++.+|.+|..    . +++++|+.+|+++++..  ++.+++.+|.+|..    .+++++|+.+|
T Consensus       352 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  426 (490)
T 2xm6_A          352 EWFRKAAAK--GEKAAQFNLGNALLQGKGVK-KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWF  426 (490)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            999999986  679999999999998    7 89999999999999864  68999999999999    89999999999


Q ss_pred             HHHHhhCCC---c-hHHHHHHHHHHHhccH--HHHHHHHHHH
Q 010276          476 ERYLKDWAD---D-SLHVKLAQVFAATNML--QEALSHYEAA  511 (514)
Q Consensus       476 ~~~~~~~~~---~-~~~~~l~~~~~~~g~~--~~A~~~~~~a  511 (514)
                      +++++..|+   + .+...++.++....+.  +.|..+|+++
T Consensus       427 ~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~  468 (490)
T 2xm6_A          427 DTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY  468 (490)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence            999999954   4 4888888877654333  2366666664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=2.9e-32  Score=252.99  Aligned_cols=263  Identities=16%  Similarity=0.090  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            44778888888888888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             -cChhHHHHHHHHHHHhcccCchhHHHH----------HHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHh
Q 010276          330 -KDERGALSYAEKSIRIDERHIPGYIMK----------GNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQ  395 (514)
Q Consensus       330 -~~~~~A~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~  395 (514)
                       |++++|+..++++++..|.++..+..+          |.++...|++++|+..|+++++..|+  + .++..+|.++..
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  225 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL  225 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence             888888888888888888766665544          89999999999999999999999998  5 789999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276          396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      .|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus       226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (365)
T 4eqf_A          226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF  304 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCC-------------chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          476 ERYLKDWAD-------------DSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       476 ~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +++++..|+             ..+|..++.++..+|+.+.|....++.++
T Consensus       305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            999999876             35899999999999999999988776543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=1.1e-28  Score=237.63  Aligned_cols=350  Identities=13%  Similarity=0.059  Sum_probs=311.4

Q ss_pred             ChhHHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHH
Q 010276          106 NENEVKYKIASCHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEA  177 (514)
Q Consensus       106 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~  177 (514)
                      .++++.+.+|.++..    .+++++|+..+++.... .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  113 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA  113 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            678889999999998    89999999999985332 678999999999999    99999999999999875  45666


Q ss_pred             HHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHH
Q 010276          178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILL  253 (514)
Q Consensus       178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~  253 (514)
                      +..|                                        |.++..    .+++++|+.+|+++.+.  +++.+++
T Consensus       114 ~~~L----------------------------------------g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  151 (490)
T 2xm6_A          114 QQNL----------------------------------------GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ  151 (490)
T ss_dssp             HHHH----------------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHH----------------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            6555                                        666776    78999999999999775  5789999


Q ss_pred             HHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          254 EMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       254 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      .+|.+|..    .+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+|+++.+.  .++.++..+|.
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  227 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLAD  227 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            99999998    88999999999999886  578999999999998    89999999999999875  57889999999


Q ss_pred             HHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhc
Q 010276          326 LWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF  396 (514)
Q Consensus       326 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (514)
                      ++..     +++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+..|+++.+.. +..+++.+|.+|...
T Consensus       228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~  304 (490)
T 2xm6_A          228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKG  304 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Confidence            9884     7899999999999875  457889999999998    899999999999998752 347899999999998


Q ss_pred             -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----
Q 010276          397 -----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLEPGYLGAALALAELHVI----  464 (514)
Q Consensus       397 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----  464 (514)
                           +++++|+.+|+++.+.  .++.+++.+|.++... |   ++++|+.+|+++++.  +++.+++.+|.++..    
T Consensus       305 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~  379 (490)
T 2xm6_A          305 AEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL-GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV  379 (490)
T ss_dssp             BTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred             CCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence                 9999999999999885  5678999999999985 6   789999999999987  578999999999999    


Q ss_pred             cCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH----hccHHHHHHHHHHHhc
Q 010276          465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALR  513 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~  513 (514)
                      .+++++|+.+|+++++.. +..+++.+|.+|..    .+++++|..+|+++++
T Consensus       380 ~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          380 KKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999864 45699999999999    8999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=4.9e-29  Score=242.61  Aligned_cols=407  Identities=10%  Similarity=0.029  Sum_probs=308.0

Q ss_pred             hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      .+..+|..++.. .+.|++++|...|+++++.+|                               .+..++..++.....
T Consensus        11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-------------------------------~~~~~w~~~~~~~~~   58 (530)
T 2ooe_A           11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-------------------------------SSGRFWKLYIEAEIK   58 (530)
T ss_dssp             TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-------------------------------TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-------------------------------CCHHHHHHHHHHHHh
Confidence            356688888884 778999999999999999987                               455677778888888


Q ss_pred             cCCHHHHHHHHhcCCCC-CccHHHHHHHHH-HHHhcCChhhHHH----HHHHHHhc---CCCCHHHHHHHHHhccCcccH
Q 010276          121 LGETKAAIVEMEGIPSK-ARNLQMSLLMAK-LYRNSRHNRGAVA----CYKECLRH---CPFFIEAITALAELGATPKDI  191 (514)
Q Consensus       121 ~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~  191 (514)
                      .|++++|..++++.... | +.+.|..++. .....|++++|.+    .|++++..   +|.+...|...+.+.......
T Consensus        59 ~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~  137 (530)
T 2ooe_A           59 AKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV  137 (530)
T ss_dssp             TTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred             cCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence            99999999999995444 6 6778888875 4456788887776    77777654   566777776654432110000


Q ss_pred             hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH----------
Q 010276          192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVD----------  259 (514)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~----------  259 (514)
                                           ..          +...|++++|..+|+++++ .|.+.  ..|...+...          
T Consensus       138 ---------------------~~----------~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~  185 (530)
T 2ooe_A          138 ---------------------GS----------YAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK  185 (530)
T ss_dssp             ---------------------SS----------TTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ---------------------cc----------HHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence                                 00          1135788999999999988 56542  3333222211          


Q ss_pred             ---HHhCChHHHHHHHHH------HHhh-----CCCC-------HHHHHHHHHHHHHh----CCh----hHHHHHHHHHh
Q 010276          260 ---AIIGKNDEAILNFEK------VRSI-----DPYI-------MTYMDEYAMLLKVK----CDY----SKLSKLVHDLL  310 (514)
Q Consensus       260 ---~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~  310 (514)
                         ...+++..|...+..      .++.     .|..       ...|..+.......    ++.    ..++..|++++
T Consensus       186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al  265 (530)
T 2ooe_A          186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL  265 (530)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence               123567777776665      3332     3332       23444443322221    222    47788999999


Q ss_pred             hcCCCChHHHHHHHHHHh--------hcChh-------HHHHHHHHHHH-hcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          311 SIDPSRPEVFVALSVLWE--------RKDER-------GALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~--------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                      ...|.++.+|..+|.++.        .|+++       +|+..|+++++ ..|+++.+|..+|.++...|++++|...|+
T Consensus       266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999876        37876       89999999997 789999999999999999999999999999


Q ss_pred             HhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCChHHHHHHHHHHHhhCCCC
Q 010276          375 GAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       375 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ++++..|.+  .+|..++.++.+.|++++|...|+++++..|.....+...+.+. ... |++++|...|+++++..|++
T Consensus       346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~-~~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHCCCC
Confidence            999998876  47899999999999999999999999998888777777666653 345 99999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +.+|..++.++...|+.++|..+|++++...|.+     .+|...+......|+.+.+..+++++++
T Consensus       425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986543     2777778888888999999999988864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=6.1e-31  Score=244.06  Aligned_cols=263  Identities=13%  Similarity=0.036  Sum_probs=241.1

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      ..+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence            35667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHH----------HHHHhh-cChhHHHHHHHHHHHhccc--CchhHHHHHHHHHhc
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVAL----------SVLWER-KDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSM  363 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  363 (514)
                      |++++|+..+++++...|+++..+..+          |.++.. |++++|+..+++++..+|.  ++.++..+|.++...
T Consensus       147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  226 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS  226 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence            999999999999999999877666554          777776 9999999999999999999  889999999999999


Q ss_pred             CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 010276          364 KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE  442 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~  442 (514)
                      |++++|+..|+++++..|++ .+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+
T Consensus       227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~  305 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFL  305 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence            99999999999999999998 88999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHhhCCC------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          443 SALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       443 ~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      +++++.|+            +..+|..++.++..+|+.+.|....++.+.
T Consensus       306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            99999877            367899999999999999998887776443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.98  E-value=1.8e-30  Score=237.09  Aligned_cols=265  Identities=15%  Similarity=0.091  Sum_probs=184.5

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV  295 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (514)
                      ...+.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChhHHHHHHHHHhhcCCCChHHHHHH--------------HH-HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276          296 KCDYSKLSKLVHDLLSIDPSRPEVFVAL--------------SV-LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL  359 (514)
Q Consensus       296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      .|++++|+..+++++...|.+...+..+              +. ++.. |++++|+..++++++..|.++.++..+|.+
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  181 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL  181 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            9999999999999999999887776665              33 2222 555566666666655555555555555555


Q ss_pred             HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      +...|++++|+..++++++..|++ .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-g~~~~A~  260 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-SQYDLAA  260 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccHHHHH
Confidence            555555555555555555555554 45555555555555555555555555555555555555555555555 5555555


Q ss_pred             HHHHHHHhhCCC------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          439 KFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       439 ~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ..|+++++..|+            ++.++..++.++...|++++|...++++++.
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            555555555555            4555555555555555555555555554443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.98  E-value=4.1e-30  Score=234.73  Aligned_cols=264  Identities=16%  Similarity=0.098  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                      +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             h-cChhHHHHHHHHHHHhcccCchhHHHH--------------HH-HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHH
Q 010276          329 R-KDERGALSYAEKSIRIDERHIPGYIMK--------------GN-LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH  391 (514)
Q Consensus       329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~  391 (514)
                      . |++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++..|++ .++..+|.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            8 999999999999999999998888777              66 7889999999999999999999987 78999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276          392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (514)
                      ++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++..|+++.++..+|.++...|++++|
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC------------c-hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          472 VSLLERYLKDWAD------------D-SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       472 ~~~~~~~~~~~~~------------~-~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      +..++++++..|+            . .++..+|.++...|++++|...++++++
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999998            4 4999999999999999999999987764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.98  E-value=1.2e-30  Score=239.09  Aligned_cols=253  Identities=9%  Similarity=-0.007  Sum_probs=183.4

Q ss_pred             HhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-hhHHHHHHHHHhhcCCCChHHHH
Q 010276          243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVFV  321 (514)
Q Consensus       243 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~  321 (514)
                      ..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..+++++..+|+++.+|+
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~  170 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  170 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            34566666777777777777777777777777777777777777777777777775 77777777777777777777777


Q ss_pred             HHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cCC
Q 010276          322 ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FSK  398 (514)
Q Consensus       322 ~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~  398 (514)
                      .+|.++.. |++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++ .+|+.+|.++.. .|.
T Consensus       171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            77776666 777777777777777777777777777777777777777777777777777776 667777777777 444


Q ss_pred             HHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----
Q 010276          399 VKEA-----LYAAREAMKAMPQSAKALKLVGDVHASNAS--GREKAKKFYESALRLEPGYLGAALALAELHVIEG-----  466 (514)
Q Consensus       399 ~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-----  466 (514)
                      .++|     +..+++++.++|++..+|+.+|.++... |  ++++|+..++++ +.+|+++.++..+|.++..+|     
T Consensus       251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~-g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc-CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence            4666     4777777777777777777777777776 6  577777777776 777777777777777777764     


Q ss_pred             ---C-hhHHHHHHHHH-HhhCCCch-HHHHHHHHHHH
Q 010276          467 ---R-NGDAVSLLERY-LKDWADDS-LHVKLAQVFAA  497 (514)
Q Consensus       467 ---~-~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~  497 (514)
                         + +++|+.+|+++ ++.+|... .|..++..+..
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence               2 47777788777 77777664 66666666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=1.7e-29  Score=231.47  Aligned_cols=253  Identities=11%  Similarity=-0.012  Sum_probs=237.0

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      ++.....+..+|.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|+++++++|++..+|..+
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            455566667779999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cCChH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRPE  367 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  367 (514)
                      |.++...|++++|+..|++++.++|++..+|..+|.++.. |++++|+.+++++++++|++..+|+.+|.++.. .|.++
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999999999999999999999988 999999999999999999999999999999999 56658


Q ss_pred             HH-----HHHHHHhHhhcCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-------
Q 010276          368 AA-----VIAFRGAQELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS-------  432 (514)
Q Consensus       368 ~A-----~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-------  432 (514)
                      +|     +..|++++.++|++ .+|..++.++...|  ++++|+..++++ +.+|+++.++..+|.++... |       
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~-~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM-LENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH-HHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH-hcccccch
Confidence            88     59999999999998 88999999999988  699999999998 99999999999999999987 4       


Q ss_pred             --ChHHHHHHHHHH-HhhCCCChHHHHHHHHHHHHc
Q 010276          433 --GREKAKKFYESA-LRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       433 --~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~  465 (514)
                        .+++|+.+|+++ ++++|.....|..++..+..+
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence              258999999999 999999999999999887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=6.4e-28  Score=234.76  Aligned_cols=365  Identities=10%  Similarity=0.026  Sum_probs=293.2

Q ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276          106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL  184 (514)
Q Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  184 (514)
                      .+..++..++.. ...|++++|...++++ ...|.+...|..++..+...|++++|+..|++++...| +...|..++..
T Consensus        11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~   88 (530)
T 2ooe_A           11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSY   88 (530)
T ss_dssp             TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence            556667777774 6789999999999995 44599999999999999999999999999999999999 67777665321


Q ss_pred             ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHH----HHHHHHHh---CCCcHHHHHHHHH
Q 010276          185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAK  257 (514)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~p~~~~~~~~la~  257 (514)
                                                             .....|++++|.+    .|++++..   +|.+..+|...+.
T Consensus        89 ---------------------------------------~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~  129 (530)
T 2ooe_A           89 ---------------------------------------VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYIN  129 (530)
T ss_dssp             ---------------------------------------HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred             ---------------------------------------HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence                                                   1223466666554    77777654   5677888888888


Q ss_pred             HHHH---------hCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHH-------------HHhCChhHHHHHHHH-----
Q 010276          258 VDAI---------IGKNDEAILNFEKVRSIDPYIM--TYMDEYAMLL-------------KVKCDYSKLSKLVHD-----  308 (514)
Q Consensus       258 ~~~~---------~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~-------------~~~~~~~~A~~~~~~-----  308 (514)
                      ....         .|+++.|..+|+++++ .|...  ..|.......             ...+++..|...+..     
T Consensus       130 ~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~  208 (530)
T 2ooe_A          130 FLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM  208 (530)
T ss_dssp             HHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            7765         7899999999999999 56542  3333333221             134567778777665     


Q ss_pred             -Hhhc-----CCCC-------hHHHHHHHHHHhh-----cCh----hHHHHHHHHHHHhcccCchhHHHHHHHHHh----
Q 010276          309 -LLSI-----DPSR-------PEVFVALSVLWER-----KDE----RGALSYAEKSIRIDERHIPGYIMKGNLLLS----  362 (514)
Q Consensus       309 -~~~~-----~~~~-------~~~~~~l~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----  362 (514)
                       .++.     .|..       ...|.........     ++.    .+++..|++++..+|.++.+|..+|..+..    
T Consensus       209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~  288 (530)
T 2ooe_A          209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL  288 (530)
T ss_dssp             HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchh
Confidence             4432     2322       2344443332221     122    378899999999999999999999999986    


Q ss_pred             ---cCChH-------HHHHHHHHhHh-hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHh
Q 010276          363 ---MKRPE-------AAVIAFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-KALKLVGDVHAS  429 (514)
Q Consensus       363 ---~~~~~-------~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~  429 (514)
                         .|+++       +|...|+++++ ..|++ ..|..++.++...|++++|...|+++++..|.++ .+|..++.++..
T Consensus       289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  368 (530)
T 2ooe_A          289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR  368 (530)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH
Confidence               79987       99999999997 78987 8899999999999999999999999999999986 699999999998


Q ss_pred             cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHH
Q 010276          430 NASGREKAKKFYESALRLEPGYLGAALALAELH-VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSH  507 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~  507 (514)
                      . |++++|+..|+++++..|.....+...+.+. ...|++++|..+|+++++..|++. +|..++.++...|+.++|...
T Consensus       369 ~-~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~  447 (530)
T 2ooe_A          369 A-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  447 (530)
T ss_dssp             H-HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             h-cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence            8 9999999999999999998888887777663 468999999999999999999874 999999999999999999999


Q ss_pred             HHHHhc
Q 010276          508 YEAALR  513 (514)
Q Consensus       508 ~~~al~  513 (514)
                      |++++.
T Consensus       448 ~~~al~  453 (530)
T 2ooe_A          448 FERVLT  453 (530)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999975

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=4.9e-28  Score=215.09  Aligned_cols=275  Identities=13%  Similarity=0.112  Sum_probs=243.7

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      ....+..|+|.+|+..++++...+|++ .+....++++|...|+++.|+..++.   .+|....++..++..+...|+.+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            667788999999999999887777776 46778899999999999999998865   25667788899999999999999


Q ss_pred             HHHHHHHHHhhc--CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          301 KLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       301 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      +|++.+++++..  +|+++.+++.+|.++.. |++++|+..+++     |.++.++..+|.++..+|++++|+..|++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999875  69999999999999888 999999999988     8889999999999999999999999999999


Q ss_pred             hhcCChH-HHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          378 ELRPDLR-SYQG--LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       378 ~~~~~~~-~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      +.+|+.. ....  +..++...|++++|+..|+++++..|+++.+++.+|.++... |++++|+..|+++++.+|+++.+
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHH
Confidence            9999873 2222  224445669999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhH-HHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHH
Q 010276          455 ALALAELHVIEGRNGD-AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHY  508 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  508 (514)
                      +.++|.++...|++++ +..+++++++..|++....   ....+.+.++++..-|
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence            9999999999999976 5789999999999987433   4567778888887766

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.96  E-value=1.3e-27  Score=226.41  Aligned_cols=371  Identities=13%  Similarity=0.057  Sum_probs=260.1

Q ss_pred             HHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH--
Q 010276           47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET--  124 (514)
Q Consensus        47 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--  124 (514)
                      ..+|..+++.|++++|+..|+++.+.  +++                               ++.+.+|.++...|++  
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~-------------------------------~A~~~Lg~~y~~~g~~~d   53 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYS-------------------------------EAQVGLADIQVGTRDPAQ   53 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCC-------------------------------TGGGTCC-----------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCH-------------------------------HHHHHHHHHHHccCCCCC
Confidence            55899999999999999999999765  333                               3444555666667777  


Q ss_pred             -HHHHHHHhcCCCCCccHHHHHHHHHHHHhcC-----ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276          125 -KAAIVEMEGIPSKARNLQMSLLMAKLYRNSR-----HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT  198 (514)
Q Consensus       125 -~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  198 (514)
                       ++|+..+++....  ++.+++.+|.++...|     ++++|+..|+++++..+.  .++..|                 
T Consensus        54 ~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~L-----------------  112 (452)
T 3e4b_A           54 IKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG--NTLIPL-----------------  112 (452)
T ss_dssp             -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHH-----------------
T ss_pred             HHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHH-----------------
Confidence             8999999986543  8888999999776665     788999999999885543  355555                 


Q ss_pred             CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHH----H
Q 010276          199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK---GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL----N  271 (514)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~----~  271 (514)
                                             |.++...+...   ++...+.++..  +.++.+++.+|.++...+.++++..    +
T Consensus       113 -----------------------g~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~  167 (452)
T 3e4b_A          113 -----------------------AMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI  167 (452)
T ss_dssp             -----------------------HHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred             -----------------------HHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence                                   44444444333   34444444433  3456788889999998885554444    4


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhC---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHH
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSI  343 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~  343 (514)
                      ++.+...+|   .+++.+|.++...|   ++++|+..|+++.+..|.....++.+|.++..     +++++|+.+|+++.
T Consensus       168 ~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          168 CKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             HHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence            444444444   48889999999999   88999999999999998888888899988876     47889999999987


Q ss_pred             HhcccCchhHHHHHHH-H--HhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCC
Q 010276          344 RIDERHIPGYIMKGNL-L--LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS-----KVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       344 ~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~p~  415 (514)
                         |.++.+++.+|.+ +  ...+++++|+.+|+++.+.. +..+++.+|.+|. .|     ++++|+.+|+++.   |.
T Consensus       245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g  316 (452)
T 3e4b_A          245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR  316 (452)
T ss_dssp             ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred             ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence               8889999999998 4  56889999999999987643 3478889998888 55     8999999999988   88


Q ss_pred             CHHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhCCCchHH
Q 010276          416 SAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADDSLH  488 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~  488 (514)
                      ++.+++.+|.+|..-   ..++++|+.+|+++.+  ++++.+.+.||.+|..    ..++.+|..+|+++.+..+. .+.
T Consensus       317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~  393 (452)
T 3e4b_A          317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAN  393 (452)
T ss_dssp             CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHH
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHH
Confidence            899999999888861   1488999999999876  4567888999998875    45889999999998876543 344


Q ss_pred             HHHHHHHHH--hccHHHHHHHHHH
Q 010276          489 VKLAQVFAA--TNMLQEALSHYEA  510 (514)
Q Consensus       489 ~~l~~~~~~--~g~~~~A~~~~~~  510 (514)
                      ..++.+...  .++..+|....++
T Consensus       394 ~~l~~l~~~~~~~~~~~a~~~~~~  417 (452)
T 3e4b_A          394 DLATQLEAPLTPAQRAEGQRLVQQ  417 (452)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            555555433  3455666665554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=4.4e-28  Score=215.03  Aligned_cols=248  Identities=13%  Similarity=0.061  Sum_probs=184.3

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276          140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY  219 (514)
Q Consensus       140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (514)
                      +++.++..|.++...|++++|+..|+++++.+|.+..++..+                                      
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--------------------------------------   43 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR--------------------------------------   43 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH--------------------------------------
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------------
Confidence            345667788888888888888888888888888766655544                                      


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV  295 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (514)
                        |.++...|++++|+..+++++. .|.+    ..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..
T Consensus        44 --~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           44 --AVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             --HHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             --HHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence              7777788888888888888887 3333    34577888888888888888888888888888888888888888888


Q ss_pred             hCChhHHHHHHHHHhhcCCCChHHHHHHH-HHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC---hHHHHH
Q 010276          296 KCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVI  371 (514)
Q Consensus       296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~  371 (514)
                      .|++++|+..+++++...|.++.++..+| .++..+++++|+..++++++.+|+++.++..+|.++...|+   +++|+.
T Consensus       121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~  200 (272)
T 3u4t_A          121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP  200 (272)
T ss_dssp             TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred             ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence            88888888888888888888888888888 67777888888888888888888888888888888887777   777888


Q ss_pred             HHHHhHhhc---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          372 AFRGAQELR---PDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       372 ~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      .|+++++..   |+.      .++..+|.++...|++++|+.+++++++.+|+++.++-.++.+..
T Consensus       201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            888877764   331      345666666666666666666666666666666666666655544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=7.6e-28  Score=213.49  Aligned_cols=246  Identities=13%  Similarity=0.047  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh----HHHHHHHH
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP----EVFVALSV  325 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~  325 (514)
                      +.++..|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.++    .++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666665 33332    23566666


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  403 (514)
                      ++.. |++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|.+ .++..+|......+++++|+
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6665 666777777777777777777777777777777777777777777777777766 56677773333444777777


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhC---CCC-----hHHHHHHHHHHHHcCChhHHH
Q 010276          404 YAAREAMKAMPQSAKALKLVGDVHASNASG---REKAKKFYESALRLE---PGY-----LGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~  472 (514)
                      ..++++++.+|+++.++..+|.++... |+   +++|+..|+++++..   |+.     ..++..+|.++...|++++|+
T Consensus       163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            777777777777777777777777776 66   667777777777654   331     246666777777777777777


Q ss_pred             HHHHHHHhhCCCch-HHHHHHHHHHH
Q 010276          473 SLLERYLKDWADDS-LHVKLAQVFAA  497 (514)
Q Consensus       473 ~~~~~~~~~~~~~~-~~~~l~~~~~~  497 (514)
                      .+++++++.+|++. ++..++.+...
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            77777777777764 55555554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=6.5e-28  Score=205.14  Aligned_cols=196  Identities=21%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHH
Q 010276          314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH  391 (514)
Q Consensus       314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~  391 (514)
                      |.++.++..+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3444444444444444 455555555555555555555555555555555555555555555555555554 44555555


Q ss_pred             HHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHH
Q 010276          392 SYLQF-----------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE  460 (514)
Q Consensus       392 ~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  460 (514)
                      ++...           |++++|+..++++++.+|+++.++..+|.++... |++++|+..|+++++++ +++.++..+|.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL-GERDKAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence            55555           6666666666666666666666666666666665 66666666666666666 55666666666


Q ss_pred             HHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          461 LHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       461 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      ++...|++++|+..|+++++..|++. ++..+|.++...|++++|+..|+++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            66666666666666666666666553 5666666666666666666665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.96  E-value=9.3e-27  Score=206.83  Aligned_cols=256  Identities=10%  Similarity=0.018  Sum_probs=165.7

Q ss_pred             hhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHH
Q 010276           51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE  130 (514)
Q Consensus        51 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  130 (514)
                      +-.+..|+|..|+..+++.....|++                              ..+..+.++++|+..|++++|+..
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~------------------------------~~e~~~~l~r~yi~~g~~~~al~~   56 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPER------------------------------DVERDVFLYRAYLAQRKYGVVLDE   56 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchh------------------------------hHHHHHHHHHHHHHCCCHHHHHHH
Confidence            44566778888887777766554421                              134556677777778888887777


Q ss_pred             HhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276          131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD  208 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (514)
                      ++..  .+....++..++..+...|+.++|+..+++++..  +|++..++..+                           
T Consensus        57 ~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l---------------------------  107 (291)
T 3mkr_A           57 IKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA---------------------------  107 (291)
T ss_dssp             SCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH---------------------------
T ss_pred             hccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH---------------------------
Confidence            6653  4456667777777777777777777777777754  47766666544                           


Q ss_pred             cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                                   |.++...|++++|+..+++     |+++.++..+|.++...|++++|++.|+++++.+|++......
T Consensus       108 -------------a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~  169 (291)
T 3mkr_A          108 -------------ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA  169 (291)
T ss_dssp             -------------HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -------------HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence                         6677777777777777776     6777777777777777777777777777777777766533332


Q ss_pred             HH--HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276          289 YA--MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR  365 (514)
Q Consensus       289 l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      .+  .++...|++++|+..|+++++..|+++.++..+|.++.. |++++|+..+++++..+|+++.++.++|.++...|+
T Consensus       170 ~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            22  223334566666666666666666666666666655555 666666666666666666666666666666666666


Q ss_pred             hHH-HHHHHHHhHhhcCCh
Q 010276          366 PEA-AVIAFRGAQELRPDL  383 (514)
Q Consensus       366 ~~~-A~~~~~~~~~~~~~~  383 (514)
                      +++ +..+++++++.+|++
T Consensus       250 ~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          250 PPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            544 345555666666655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=8.9e-28  Score=204.28  Aligned_cols=210  Identities=15%  Similarity=0.069  Sum_probs=141.1

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            55566666777777777777777777777777777777777777777777776666666666666666666666666666


Q ss_pred             HHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276          326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       326 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      ++....            ...+.          .....|++++|+..|+++++.+|++ .++..+|.++...|++++|+.
T Consensus        82 ~~~~~~------------~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           82 AYVALY------------RQAED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHHH------------HTCSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhh------------hhhhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence            554310            00000          1122378888888888888888887 778888888888888888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276          405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL  479 (514)
Q Consensus       405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  479 (514)
                      .|+++++.+ +++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus       140 ~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          140 SLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            888888888 7888888888888887 888888888888888888888888888888888888888888887653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-27  Score=207.81  Aligned_cols=224  Identities=13%  Similarity=0.118  Sum_probs=123.8

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------MTYMDE  288 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~  288 (514)
                      ..++.+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++.+|.+       +.++..
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            344455555555666666666666655555 555555555666666666666666665555555544       445555


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA  368 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      +|.++...|++++|+..+++++...|.                                         +.++...|++++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------------------------~~~~~~~~~~~~  123 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------------------------------ADILTKLRNAEK  123 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch-----------------------------------------hHHHHHHhHHHH
Confidence            555555555555555555555554443                                         233444444555


Q ss_pred             HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      |+..+++++...|.. .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence            555555555555444 44555555555555555555555555555555555555555555555 5555555555555555


Q ss_pred             CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      +|+++.++..+|.++...|++++|+..++++++..
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            55555555555555555555555555555555555

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.9e-27  Score=205.96  Aligned_cols=226  Identities=12%  Similarity=0.052  Sum_probs=154.2

Q ss_pred             CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----
Q 010276          173 FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----  248 (514)
Q Consensus       173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----  248 (514)
                      .....+..++..+...++..++...........       .....++.+|.++...|++++|+..++++++..|++    
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   75 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY   75 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence            346678889999999999999999988887543       334556778999999999999999999999988866    


Q ss_pred             ---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          249 ---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       249 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                         +.++..+|.++...|++++|+..|+++++.+|.        +.++...|++++|+..+++++...|.++.++..+|.
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  147 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK  147 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence               789999999999999999999999999999987        345666666666666666666655555555555555


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  403 (514)
                      ++.. |++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+
T Consensus       148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444 555555555555555555544444455555555555555555554444444443 34444444444444444444


Q ss_pred             HHHHHHHhhC
Q 010276          404 YAAREAMKAM  413 (514)
Q Consensus       404 ~~~~~~~~~~  413 (514)
                      ..++++++..
T Consensus       228 ~~~~~a~~~~  237 (258)
T 3uq3_A          228 ETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            4444444444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=225.81  Aligned_cols=288  Identities=15%  Similarity=0.149  Sum_probs=251.8

Q ss_pred             hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCH
Q 010276          214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIM  283 (514)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~  283 (514)
                      ....++..|..+...|++++|+..|++++...|+++    .++..+|.++...|++++|+.++++++..      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344567789999999999999999999999999884    67889999999999999999999999876      34447


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHhh-cC--------------------hhHHH
Q 010276          284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGAL  336 (514)
Q Consensus       284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~  336 (514)
                      .++..+|.++...|++++|+..+++++...|..      ..++..+|.++.. |+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            789999999999999999999999999876643      4478888988888 88                    99999


Q ss_pred             HHHHHHHHh------cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHH
Q 010276          337 SYAEKSIRI------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       337 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~  403 (514)
                      ..+++++..      .|....++..+|.++...|++++|+..++++++..|..       .++..+|.++...|++++|+
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999999887      34445678999999999999999999999999875543       26899999999999999999


Q ss_pred             HHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHH
Q 010276          404 YAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       404 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A  471 (514)
                      ..+++++...|..      ..++..+|.++... |++++|+.+++++++..+..      ..++..+|.++...|++++|
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999887765      77889999999998 99999999999999875443      56889999999999999999


Q ss_pred             HHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHH
Q 010276          472 VSLLERYLKDWADD-------SLHVKLAQVFAATNMLQ  502 (514)
Q Consensus       472 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~  502 (514)
                      +.+++++++..+..       .++..+|.++...|+..
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            99999999875321       48889999999999763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=8.9e-27  Score=219.42  Aligned_cols=298  Identities=16%  Similarity=0.160  Sum_probs=251.5

Q ss_pred             CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      ......++.+|.++...|++++|+..|+++++..|.+.......                                    
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------------   49 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAI------------------------------------   49 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHH------------------------------------
Confidence            34667788999999999999999999999999999876543221                                    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTY  285 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~  285 (514)
                      +..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+.+++++++..|..      ..+
T Consensus        50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  129 (406)
T 3sf4_A           50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  129 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            234589999999999999999998875      33447789999999999999999999999999876643      458


Q ss_pred             HHHHHHHHHHhCC--------------------hhHHHHHHHHHhhc------CCCChHHHHHHHHHHhh-cChhHHHHH
Q 010276          286 MDEYAMLLKVKCD--------------------YSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KDERGALSY  338 (514)
Q Consensus       286 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~A~~~  338 (514)
                      +..+|.++...|+                    +++|+..+.+++..      .|....++..+|.++.. |++++|+.+
T Consensus       130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (406)
T 3sf4_A          130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  209 (406)
T ss_dssp             HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            8999999999999                    99999999998875      23335678888988887 999999999


Q ss_pred             HHHHHHhcccCch------hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 010276          339 AEKSIRIDERHIP------GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYA  405 (514)
Q Consensus       339 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~  405 (514)
                      +++++...|....      ++..+|.++...|++++|+..+++++...|..       .++..+|.++...|++++|+..
T Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  289 (406)
T 3sf4_A          210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  289 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            9999998777655      88999999999999999999999999875542       4688999999999999999999


Q ss_pred             HHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCChhHHH
Q 010276          406 AREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       406 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      +++++...+..      ..++..+|.++... |++++|+.++++++++.+      ....++..++.++...|+...+.
T Consensus       290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  367 (406)
T 3sf4_A          290 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN  367 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence            99999876543      67889999999999 999999999999998733      33568889999999999875433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=3.5e-26  Score=215.71  Aligned_cols=273  Identities=14%  Similarity=0.139  Sum_probs=227.3

Q ss_pred             chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCC
Q 010276          212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPY  281 (514)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~  281 (514)
                      +.....++..|..+...|++++|+..|+++++..|+++    .++..+|.++...|++++|+.+++++++.      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            34455566789999999999999999999999999886    57889999999999999999999999987      466


Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCChHHHHHHHHHHhh-cC-----------------hhHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KD-----------------ERGALS  337 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~-----------------~~~A~~  337 (514)
                      ...++..+|.++...|++++|+..+++++..      .|....++..+|.++.. |+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6788999999999999999999999999887      44456678888888877 88                 888888


Q ss_pred             HHHHHHHhcc------cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 010276          338 YAEKSIRIDE------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       338 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      ++++++...+      ....++..+|.++...|++++|+..++++++..|..       .++..+|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            8888877643      334578888999999999999999999988876543       267888999999999999999


Q ss_pred             HHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHH
Q 010276          405 AAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       405 ~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~  472 (514)
                      .+++++...|..      ..++..+|.++... |++++|+.++++++...+..      ..++..+|.++...|++++|+
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  363 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL  363 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence            999988877643      67788889998888 99999999999888874432      347888899999999999999


Q ss_pred             HHHHHHHhhCCCc
Q 010276          473 SLLERYLKDWADD  485 (514)
Q Consensus       473 ~~~~~~~~~~~~~  485 (514)
                      .++++++++.+..
T Consensus       364 ~~~~~al~~~~~~  376 (411)
T 4a1s_A          364 KYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999988887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.95  E-value=2.1e-26  Score=218.13  Aligned_cols=343  Identities=13%  Similarity=0.110  Sum_probs=258.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          112 YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN---RGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      ..+|..+...|++++|+..++++.. +.++.+++.+|.+|...|++   ++|+..|+++++.   ++.++..+       
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~-~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L-------   75 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAE-LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL-------   75 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HTCCTGGGTCC-------------------------------CHHHH-------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------
Confidence            4578999999999999999998632 35677889999999999998   9999999999876   44455544       


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG  263 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  263 (514)
                                                       |.++...     +++++|+.+|+++++..  ++.+++.+|.+|...+
T Consensus        76 ---------------------------------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~  120 (452)
T 3e4b_A           76 ---------------------------------GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP  120 (452)
T ss_dssp             ---------------------------------HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred             ---------------------------------HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence                                             4433333     37899999999998854  4558999999999887


Q ss_pred             ChHHH---HHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh-cCCCChHHHHHHHHHHhh-c---ChhHH
Q 010276          264 KNDEA---ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-K---DERGA  335 (514)
Q Consensus       264 ~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~---~~~~A  335 (514)
                      ..+++   .+.+.++..  +.++.+++.+|.++...+.++++......... ..+.++.+++.+|.++.. |   ++++|
T Consensus       121 ~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A  198 (452)
T 3e4b_A          121 HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL  198 (452)
T ss_dssp             GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence            65544   444444443  34578999999999999977665555333322 123445599999998888 7   88999


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHhc----CChHHHHHHHHHhHhhcCCh-HHHHHHHHH-H--HhcCCHHHHHHHHH
Q 010276          336 LSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPEAAVIAFRGAQELRPDL-RSYQGLVHS-Y--LQFSKVKEALYAAR  407 (514)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~--~~~~~~~~A~~~~~  407 (514)
                      +.+|+++.+..|.....++.+|.+|...    +++++|+..|+++.   |.+ .+++.+|.+ +  ...+++++|+.+|+
T Consensus       199 ~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~  275 (452)
T 3e4b_A          199 LKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD  275 (452)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            9999999999999888889999999766    79999999999997   665 899999998 4  57899999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHH
Q 010276          408 EAMKAMPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERY  478 (514)
Q Consensus       408 ~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  478 (514)
                      ++.+.  .++.+++.+|.+|..  |     ++++|+.+|+++.   |+++.+.+.||.+|..    ..++++|+.+|+++
T Consensus       276 ~Aa~~--g~~~A~~~Lg~~y~~--G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          276 NGRAA--DQPRAELLLGKLYYE--GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHH--CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHC--CCHHHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            99864  589999999999984  6     9999999999998   8999999999999887    44999999999999


Q ss_pred             HhhCCCchHHHHHHHHHHH----hccHHHHHHHHHHHhc
Q 010276          479 LKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALR  513 (514)
Q Consensus       479 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~  513 (514)
                      .+.. +..+.+.+|.+|..    ..++.+|..+|+++.+
T Consensus       349 a~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          349 ARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            8753 34689999999985    4689999999999865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=1.3e-26  Score=218.62  Aligned_cols=267  Identities=15%  Similarity=0.088  Sum_probs=237.2

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCC
Q 010276          247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSR  316 (514)
Q Consensus       247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~  316 (514)
                      .....+..+|..+...|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++..      .|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3456778899999999999999999999999999986    57899999999999999999999999887      4566


Q ss_pred             hHHHHHHHHHHhh-cChhHHHHHHHHHHHh------cccCchhHHHHHHHHHhcCC-----------------hHHHHHH
Q 010276          317 PEVFVALSVLWER-KDERGALSYAEKSIRI------DERHIPGYIMKGNLLLSMKR-----------------PEAAVIA  372 (514)
Q Consensus       317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~  372 (514)
                      ..++..+|.++.. |++++|+.++++++..      .|....++..+|.++...|+                 +++|+..
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            7889999998888 9999999999999988      55667789999999999999                 9999999


Q ss_pred             HHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCChHHHHH
Q 010276          373 FRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------KALKLVGDVHASNASGREKAKK  439 (514)
Q Consensus       373 ~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~A~~  439 (514)
                      +++++++.+.      . .++..+|.++...|++++|+.++++++...|...      .++..+|.++... |++++|+.
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~  284 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL-GQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC-cCHHHHHH
Confidence            9999876422      1 4789999999999999999999999999876543      3889999999998 99999999


Q ss_pred             HHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHHH
Q 010276          440 FYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALS  506 (514)
Q Consensus       440 ~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~  506 (514)
                      .|++++...|..      ..++..+|.++...|++++|+.++++++...+..       .++..+|.+|...|++++|..
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999999987643      5688999999999999999999999999986532       488999999999999999999


Q ss_pred             HHHHHhcC
Q 010276          507 HYEAALRL  514 (514)
Q Consensus       507 ~~~~al~l  514 (514)
                      +|++++++
T Consensus       365 ~~~~al~~  372 (411)
T 4a1s_A          365 YAEQHLQL  372 (411)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999863

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.94  E-value=1.2e-26  Score=206.23  Aligned_cols=246  Identities=11%  Similarity=0.004  Sum_probs=154.5

Q ss_pred             HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          225 CIASNDYKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       225 ~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                      ....|++++|+..++++++..    |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            344578888888888888763    4457788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL  379 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  379 (514)
                      +|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|+++......+.. ...|++++|+..+++++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence            88877777777777777777666666665 666666666666666666655444333322 4446666666666666665


Q ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHH
Q 010276          380 RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ----SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                      .|+......++..+...++.++|+..+++++...|.    ++.++..+|.++... |++++|+..|++++..+|++...+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~  252 (275)
T 1xnf_A          174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHNFVEH  252 (275)
T ss_dssp             SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCchhHHHH
Confidence            555533334555555555555555555555544432    234455555555554 555555555555555555442222


Q ss_pred             HHHHHHHHHcCChhHHHHHH
Q 010276          456 LALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~  475 (514)
                         +.++...|++++|++.+
T Consensus       253 ---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          253 ---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHC----
T ss_pred             ---HHHHHHHHHHHhhHHHH
Confidence               34444445555554444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=7.4e-26  Score=207.32  Aligned_cols=265  Identities=15%  Similarity=0.144  Sum_probs=151.4

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTY  285 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~  285 (514)
                      ..++..|..+...|++++|+..|+++++..|++    ..++..+|.++...|++++|+..+++++..      .|....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            345667888889999999999999999888887    367778889999999999999998888776      3344567


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------HHHHHHHHHHhh-cC--------------------hhHHHHH
Q 010276          286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------EVFVALSVLWER-KD--------------------ERGALSY  338 (514)
Q Consensus       286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~-~~--------------------~~~A~~~  338 (514)
                      +..+|.++...|++++|+..+++++...|...      .++..+|.++.. |+                    +++|+..
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            77777788888888888877777776544322      245555555554 55                    5555555


Q ss_pred             HHHHHHhc------ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 010276          339 AEKSIRID------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYA  405 (514)
Q Consensus       339 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~  405 (514)
                      +++++...      |....++..+|.++...|++++|+..++++++..|..       .++..+|.++...|++++|+..
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55554431      1222344455555555555555555555554443221       1344444444444444444444


Q ss_pred             HHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHH
Q 010276          406 AREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       406 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~  473 (514)
                      +++++...|..      ..++..+|.++... |++++|+.+++++++..|..      ..++..+|.++...|++++|..
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            44444433322      33344444444444 44444444444444432211      1233344444444444444444


Q ss_pred             HHHHHHhh
Q 010276          474 LLERYLKD  481 (514)
Q Consensus       474 ~~~~~~~~  481 (514)
                      ++++++++
T Consensus       325 ~~~~a~~~  332 (338)
T 3ro2_A          325 FAEKHLEI  332 (338)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            44444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=9.7e-26  Score=206.51  Aligned_cols=265  Identities=14%  Similarity=0.117  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCChH
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPE  318 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~  318 (514)
                      ...+...|..+...|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            45677889999999999999999999999999984    67889999999999999999999998876      344467


Q ss_pred             HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch------hHHHHHHHHHhcCC--------------------hHHHHH
Q 010276          319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIP------GYIMKGNLLLSMKR--------------------PEAAVI  371 (514)
Q Consensus       319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------------------~~~A~~  371 (514)
                      ++..+|.++.. |++++|+..+++++...|....      ++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            78889998888 9999999999999998776543      78899999999999                    999999


Q ss_pred             HHHHhHhhcC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHH
Q 010276          372 AFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       372 ~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      .+++++...+   +.    .++..+|.++...|++++|+..+++++...|..      ..++..+|.++... |++++|+
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~  243 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            9999887632   11    468899999999999999999999999876543      34889999999999 9999999


Q ss_pred             HHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHH
Q 010276          439 KFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       439 ~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~  505 (514)
                      ..+++++...|..      ..++..+|.++...|++++|+.+++++++..+..       .++..+|.++...|++++|.
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            9999999876554      5688999999999999999999999999886532       38889999999999999999


Q ss_pred             HHHHHHhcC
Q 010276          506 SHYEAALRL  514 (514)
Q Consensus       506 ~~~~~al~l  514 (514)
                      .+|++++++
T Consensus       324 ~~~~~a~~~  332 (338)
T 3ro2_A          324 HFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.94  E-value=1.7e-25  Score=198.65  Aligned_cols=247  Identities=11%  Similarity=0.026  Sum_probs=216.1

Q ss_pred             HHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cCh
Q 010276          258 VDAIIGKNDEAILNFEKVRSID----PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE  332 (514)
Q Consensus       258 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  332 (514)
                      .....|++++|+..|+++++..    |.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. |++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3445688999999999999973    45678999999999999999999999999999999999999999999888 999


Q ss_pred             hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276          333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA  412 (514)
Q Consensus       333 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  412 (514)
                      ++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++..|++.............|++++|+..+++++..
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999854444444557779999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276          413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH  488 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  488 (514)
                      .|++...+. ++.++... ++.++|+..+++++...|..    +.++..+|.++...|++++|+..|+++++..|++.. 
T Consensus       174 ~~~~~~~~~-~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-  250 (275)
T 1xnf_A          174 SDKEQWGWN-IVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV-  250 (275)
T ss_dssp             SCCCSTHHH-HHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred             CCcchHHHH-HHHHHHHh-cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence            998866655 66677776 88899999999998877643    689999999999999999999999999999997642 


Q ss_pred             HHHHHHHHHhccHHHHHHHH
Q 010276          489 VKLAQVFAATNMLQEALSHY  508 (514)
Q Consensus       489 ~~l~~~~~~~g~~~~A~~~~  508 (514)
                       ..+.++..+|++++|++.|
T Consensus       251 -~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 -EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHC----
T ss_pred             -HHHHHHHHHHHHHhhHHHH
Confidence             3377888999999999886

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.94  E-value=4.7e-25  Score=191.93  Aligned_cols=213  Identities=18%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                      +..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             h-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          329 R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      . |++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4 555555555555555555555555555555555555555555555555555544 44555555555555555555555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      ++++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..++.+.
T Consensus       183 ~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          183 AAVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            555555555555555555555555 5555555555555555555555555544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.94  E-value=1.1e-24  Score=189.63  Aligned_cols=216  Identities=13%  Similarity=0.090  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL  361 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      +..+..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999998888 99999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276          362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF  440 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~  440 (514)
                      ..|++++|+..++++++..|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~  181 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQ  181 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            9999999999999999999987 88999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhc
Q 010276          441 YESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATN  499 (514)
Q Consensus       441 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g  499 (514)
                      ++++++..|+++.++..+|.++...|++++|+..++++++..|++. ++..++.+....|
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999985 7777776655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=4.8e-23  Score=182.46  Aligned_cols=229  Identities=17%  Similarity=0.100  Sum_probs=182.5

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHH
Q 010276          245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVF  320 (514)
Q Consensus       245 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~  320 (514)
                      +|+++.+++.+|.++...|++++|+.+|+++++  |.++.++..+|.++..    .+++++|+..|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            466777778888888888888888888888777  6667777888888887    888888888888877764  67777


Q ss_pred             HHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHH
Q 010276          321 VALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVH  391 (514)
Q Consensus       321 ~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~  391 (514)
                      ..+|.++..     +++++|+.+|+++++.+  ++.++..+|.++..    .+++++|+..|+++++.. +..++..+|.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~  154 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            778777663     77788888888887763  67788888888888    888888888888888765 3467888888


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          392 SYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       392 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ++..    .+++++|+.+++++++.  +++.++..+|.++..    . +++++|+.+|+++++.+|  +.++..+|.++.
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            8888    88888888888888876  457888888888888    7 888888888888888765  778888888888


Q ss_pred             H----cCChhHHHHHHHHHHhhCCCc
Q 010276          464 I----EGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       464 ~----~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .    .+++++|+.+|+++++..|++
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            8    888888999998888887764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=9.6e-24  Score=184.67  Aligned_cols=204  Identities=16%  Similarity=0.096  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE  328 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (514)
                      +.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            45555666666666666666666666666655555555555555555555555555555555555555544444444444


Q ss_pred             h-cChhHHHHHHHHHHH--hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276          329 R-KDERGALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       329 ~-~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      . |++++|+.++++++.  ..|.++.++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            3 444444444444444  334444444444444444444444444444444444443 344444444444444444444


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276          405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG  453 (514)
Q Consensus       405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  453 (514)
                      .+++++...|++...+..++.++... |++++|...++++++..|+++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          197 YYDLFAQGGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHH
Confidence            44444444444444444444444444 4444444444444444444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=1.5e-23  Score=188.78  Aligned_cols=256  Identities=11%  Similarity=0.099  Sum_probs=215.4

Q ss_pred             hhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCH------
Q 010276          158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY------  231 (514)
Q Consensus       158 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------  231 (514)
                      ++|+..|++++..+|.++.+|..++......                                 +..+...|++      
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~---------------------------------~~~l~~~g~~~~~~~~   79 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS---------------------------------SKLLAEKGDMNNAKLF   79 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------------------chhhhhccchhhcccc
Confidence            7899999999999999999998885443110                                 1112244665      


Q ss_pred             -HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhCChhHHHHHHHH
Q 010276          232 -KGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-YMDEYAMLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       232 -~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~  308 (514)
                       ++|+..|++++. ..|++..+|..+|.++...|++++|...|+++++.+|.++. +|..++.++...|++++|...|++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             999999999999 69999999999999999999999999999999999999987 999999999999999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHh--hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh---cCC-
Q 010276          309 LLSIDPSRPEVFVALSVLWE--RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---RPD-  382 (514)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-  382 (514)
                      +++..|.+..++...+.+..  .|++++|+..|+++++.+|+++.+|..+|.++...|++++|...|++++..   .|+ 
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~  239 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence            99999999888887776643  399999999999999999999999999999999999999999999999995   444 


Q ss_pred             h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          383 L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       383 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      . ..|..++..+...|++++|...++++++..|+++..... +.+ .   .++        +.+.++|.++.++..||
T Consensus       240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-~---~r~--------~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-V---DRY--------KFMDLYPCSASELKALG  304 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-H---TTT--------CBTTBCSSCHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-H---HHH--------HhcccCCCCHHHHHhcC
Confidence            3 678889999999999999999999999999985533211 222 1   111        45668899888887665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.93  E-value=3.6e-24  Score=199.60  Aligned_cols=299  Identities=16%  Similarity=0.127  Sum_probs=234.3

Q ss_pred             chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHH--HHH--HHHHHHhCChHHHH-----------HHHH
Q 010276          212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHIL--LEM--AKVDAIIGKNDEAI-----------LNFE  273 (514)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~--~~l--a~~~~~~~~~~~A~-----------~~~~  273 (514)
                      ++.....+.........+++++|..+++++.+..+   .+..+.  +.+  .+.....++.+.+.           +.++
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~   88 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL   88 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence            34445556667778899999999999999876432   344433  222  22223334444444           5555


Q ss_pred             HHHhhCCCCHH------HHHHHHHHHHHhCChhHHHHHHHHHhhc---CCC---ChHHHHHHHHHHhh-cChhHHHHHHH
Q 010276          274 KVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSI---DPS---RPEVFVALSVLWER-KDERGALSYAE  340 (514)
Q Consensus       274 ~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~  340 (514)
                      ++-. .|....      .++..|.++...|++++|+..+++++..   .++   .+.++..+|.++.. |++++|+.+++
T Consensus        89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~  167 (383)
T 3ulq_A           89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR  167 (383)
T ss_dssp             HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5433 333323      3445899999999999999999999987   233   35788999998888 99999999999


Q ss_pred             HHHHhcccCc-------hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          341 KSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       341 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      +++++.+...       .++..+|.++...|++++|+..|+++++..|..       .++.++|.+|...|++++|+.++
T Consensus       168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999865543       478899999999999999999999999885432       37899999999999999999999


Q ss_pred             HHHHh-----hC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHcCC---hhHHH
Q 010276          407 REAMK-----AM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-----PGYLGAALALAELHVIEGR---NGDAV  472 (514)
Q Consensus       407 ~~~~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~  472 (514)
                      ++++.     .+ |..+.++..+|.++... |++++|+.++++++++.     |.....+..++.++...|+   +++|+
T Consensus       248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al  326 (383)
T 3ulq_A          248 KRAIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF  326 (383)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999     46 77889999999999999 99999999999999873     3333446779999999999   78888


Q ss_pred             HHHHHHHhhCCC-chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          473 SLLERYLKDWAD-DSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ..+++. ...|. ..++..+|.+|...|++++|..+|+++++
T Consensus       327 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          327 DFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888776 22222 24888999999999999999999999986

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=2.1e-23  Score=182.45  Aligned_cols=208  Identities=16%  Similarity=0.109  Sum_probs=198.5

Q ss_pred             hCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH
Q 010276          278 IDPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM  355 (514)
Q Consensus       278 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~  355 (514)
                      .+|.. +.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|.++.++..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            45555 78899999999999999999999999999999999999999998888 99999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhHh--hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS  432 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  432 (514)
                      +|.++...|++++|+..+++++.  ..|.. .++..+|.++...|++++|+..+++++...|.++.++..+|.++... |
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g  189 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-R  189 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C
Confidence            99999999999999999999999  77776 78999999999999999999999999999999999999999999998 9


Q ss_pred             ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       433 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      ++++|+..++++++..|.++.++..++.++...|++++|...++++++..|++.
T Consensus       190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999999999999999999999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=7.3e-24  Score=175.64  Aligned_cols=170  Identities=16%  Similarity=0.216  Sum_probs=104.4

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276          247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL  326 (514)
Q Consensus       247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  326 (514)
                      +++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666665555


Q ss_pred             Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276          327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY  404 (514)
Q Consensus       327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~  404 (514)
                      +.. ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            554 555566666666666666555555555666555555555555555555555555 455555555555555555555


Q ss_pred             HHHHHHhhCCCC
Q 010276          405 AAREAMKAMPQS  416 (514)
Q Consensus       405 ~~~~~~~~~p~~  416 (514)
                      .|+++++.+|++
T Consensus       163 ~~~~al~~~p~~  174 (184)
T 3vtx_A          163 YFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHTTHHH
T ss_pred             HHHHHHhCCccC
Confidence            555555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=7.3e-24  Score=175.62  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=122.5

Q ss_pred             CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276          315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS  392 (514)
Q Consensus       315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~  392 (514)
                      +++.+++.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+. .++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            455666667766666 777777777777777777777777777777777777777777777777777766 566677777


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      +...++++.|...+.+++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            77777777777777777777777777777777777776 77777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhCCCc
Q 010276          473 SLLERYLKDWADD  485 (514)
Q Consensus       473 ~~~~~~~~~~~~~  485 (514)
                      ..|+++++.+|++
T Consensus       162 ~~~~~al~~~p~~  174 (184)
T 3vtx_A          162 KYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHTTHHH
T ss_pred             HHHHHHHhCCccC
Confidence            7777777776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.93  E-value=8.7e-22  Score=197.77  Aligned_cols=416  Identities=10%  Similarity=-0.001  Sum_probs=257.9

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhccc----CchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKI----VPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA  120 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  120 (514)
                      ---...+.|...|++.+|++.|++++ ..|.    +......+.++..+. +.....+....  .+ ....-.+|.++..
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k--Ld-~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR--LD-NYDAPDIANIAIS 1061 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH--hh-hccHHHHHHHHHh
Confidence            34456677779999999999999999 4454    333333355555544 22221111111  11 1112347888999


Q ss_pred             cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCC
Q 010276          121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN  200 (514)
Q Consensus       121 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  200 (514)
                      .|.+++|..++++...   ..   ..+...+...|++++|++.++++     +.+.+|..++......+++.++.+...+
T Consensus      1062 lglyEEAf~IYkKa~~---~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDV---NT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             CCCHHHHHHHHHHcCC---HH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            9999999999998631   11   11233344778888888888865     5577787776666555555555544433


Q ss_pred             cCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Q 010276          201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP  280 (514)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  280 (514)
                      .           +++..+...|.++.+.|++++|+++|..+.+..++. .+...+|.+|.+.+++++ ++.|.     ..
T Consensus      1131 A-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI-----~~ 1192 (1630)
T 1xi4_A         1131 A-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFI-----NG 1192 (1630)
T ss_pred             c-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHH-----hC
Confidence            1           222233344666667777777777777666655332 222346666666666663 33331     12


Q ss_pred             CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276          281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL  359 (514)
Q Consensus       281 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      .+...+..+|..+...|++++|..+|.++        ..|..++.++.. |++++|++.++++     .++.+|...+.+
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~a 1259 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 1259 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHH
Confidence            23345556777777777777777777664        356666666666 6777777777666     345666666777


Q ss_pred             HHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAK  438 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~  438 (514)
                      +...|+|..|..+... +..+|+  .+..++..|...|.+++|+.+++.++.++|.+...+..+|.++.+. .++..+++
T Consensus      1260 cve~~Ef~LA~~cgl~-Iiv~~d--eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLH-IVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred             HhhhhHHHHHHHHHHh-hhcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence            7777777777666553 322333  3446777788888888888888888888888777887777777653 14556777


Q ss_pred             HHHHHHHhhCC-----CChHHHHHHHHHHHHcCChhHHHHHHHHH-------------HhhCCCchHHHHHHHHHHHhc-
Q 010276          439 KFYESALRLEP-----GYLGAALALAELHVIEGRNGDAVSLLERY-------------LKDWADDSLHVKLAQVFAATN-  499 (514)
Q Consensus       439 ~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g-  499 (514)
                      +.|...+.+.|     ++...|..+..+|.+-|+++.|+..+-..             +....+.++++.....|...+ 
T Consensus      1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P 1416 (1630)
T 1xi4_A         1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 1416 (1630)
T ss_pred             HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhCh
Confidence            77777776665     56677888888888888888887433332             222223357777777777666 


Q ss_pred             --------------cHHHHHHHHHH
Q 010276          500 --------------MLQEALSHYEA  510 (514)
Q Consensus       500 --------------~~~~A~~~~~~  510 (514)
                                    ++..+...|++
T Consensus      1417 ~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A         1417 LLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred             HHHHHHHHHhhhcCChHHHHHHHHH
Confidence                          66666666553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=5.7e-23  Score=176.37  Aligned_cols=206  Identities=14%  Similarity=0.072  Sum_probs=137.1

Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      |.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34444444455555555555555555555555555555555555555444 55555555555555566666666666777


Q ss_pred             HHHhc-CChHHHHHHHHHhHh--hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276          359 LLLSM-KRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR  434 (514)
Q Consensus       359 ~~~~~-~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  434 (514)
                      ++... |++++|+..++++++  ..|.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCH
Confidence            77777 777777777777776  44444 56777777777777777777777777777777777777777777777 777


Q ss_pred             HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          435 EKAKKFYESALRLEP-GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       435 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      ++|+..++++++..| .++.++..++.++...|++++|..+++.+.+..|++.
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            777777777777777 7777777777777777777777777777777777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.93  E-value=4e-22  Score=200.19  Aligned_cols=403  Identities=11%  Similarity=0.073  Sum_probs=293.1

Q ss_pred             hHhhhhhHHHHHHHHHHHHhh-cccCchhhhhhhhhhhhccccCCCCccccc--ccC----ChhHHHHHHHHHHHhcCCH
Q 010276           52 SLFRDREYRRAIHTYKQALQY-YKIVPKQNSTSSRSSLSTSNRSSSPNSFNV--SAI----NENEVKYKIASCHFALGET  124 (514)
Q Consensus        52 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~----~~~~~~~~la~~~~~~g~~  124 (514)
                      ++-....+.+-+--...++.+ ...+|+-.....+.++..|...++.+.+..  ..+    ++......++.+..+. +.
T Consensus       959 vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A          959 VLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred             HhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Ch
Confidence            333344555555555454443 233445556667777788888888777732  112    2334444466655555 44


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCC
Q 010276          125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR  204 (514)
Q Consensus       125 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  204 (514)
                      .+......++. ...    .-.+|.++...|.+++|...|+++-    ....+...+..   ..++++++.+.+.+.   
T Consensus      1038 ~Rv~eyI~kLd-~~d----~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv--- 1102 (1630)
T 1xi4_A         1038 TRVMEYINRLD-NYD----APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC--- 1102 (1630)
T ss_pred             hhHHHHHHHhh-hcc----HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc---
Confidence            55555555442 111    2338999999999999999999973    23333222221   334455554444432   


Q ss_pred             CCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q 010276          205 APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT  284 (514)
Q Consensus       205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  284 (514)
                           ..+..   ++..|..+...|++++|+..|.++     +++..+..+|.++.+.|++++|+++|..+.+..+.. .
T Consensus      1103 -----n~p~v---WsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~ 1168 (1630)
T 1xi4_A         1103 -----NEPAV---WSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-Y 1168 (1630)
T ss_pred             -----CCHHH---HHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-c
Confidence                 12333   345699999999999999999775     788999999999999999999999999999887543 2


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM  363 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      +-..+|.+|.+.+++++ ++.|   +  .+.+...+..+|..+.. |++++|..+|.++        ..|..+|.++.++
T Consensus      1169 Idt~LafaYAKl~rlee-le~f---I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A         1169 VETELIFALAKTNRLAE-LEEF---I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL 1234 (1630)
T ss_pred             ccHHHHHHHHhhcCHHH-HHHH---H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHh
Confidence            23358999999999885 3333   2  23344566679988777 9999999999986        4788999999999


Q ss_pred             CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276          364 KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      |++++|++.++++    .+..+|...+.++...|++..|..+... +..   +++.+..++..|... |.+++|+.++++
T Consensus      1235 ge~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~-G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1235 GEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR-GYFEELITMLEA 1305 (1630)
T ss_pred             CCHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            9999999999998    3348899999999999999999988774 333   355666889999998 999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHH--cCChhHHHHHHHHHHhhCC-----Cc-hHHHHHHHHHHHhccHHHHHHH
Q 010276          444 ALRLEPGYLGAALALAELHVI--EGRNGDAVSLLERYLKDWA-----DD-SLHVKLAQVFAATNMLQEALSH  507 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~  507 (514)
                      ++.++|.+...+..++.++.+  .++..++++.|...+.+.|     +. ..|..+..+|.+-|+++.|...
T Consensus      1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            999999999999888888866  4567788888888777665     22 5899999999999999999943

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=5.2e-24  Score=203.02  Aligned_cols=212  Identities=15%  Similarity=0.109  Sum_probs=169.5

Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh-hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHH
Q 010276          264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK  341 (514)
Q Consensus       264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~  341 (514)
                      .+++++..++......|.+..++..+|.++...|++ ++|+..|+++++.+|+++.++..+|.++.. |++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356677777777777777888888888888888888 888888888888888888888888887777 888888888888


Q ss_pred             HHHhcccCchhHHHHHHHHHhc---------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------CCHHHHH
Q 010276          342 SIRIDERHIPGYIMKGNLLLSM---------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEAL  403 (514)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~  403 (514)
                      +++.+|+ ..++..+|.++...         |++++|+..|+++++.+|++ .+|..+|.++...        |++++|+
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            8888877 57778888888888         88888888888888888876 6788888888877        7788888


Q ss_pred             HHHHHHHhhCC---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276          404 YAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       404 ~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (514)
                      ..|++++..+|   +++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus       242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          242 SAYAQAEKVDRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888888888   7788888888888887 8888888888888888888888888888888888888877765543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=3.8e-24  Score=203.94  Aligned_cols=214  Identities=15%  Similarity=0.116  Sum_probs=202.6

Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cCh-hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR  374 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  374 (514)
                      +.+++++..+.+.....|.++.+++.+|.++.. |++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            446778888888889999999999999999988 999 999999999999999999999999999999999999999999


Q ss_pred             HhHhhcCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----C--CChHHHH
Q 010276          375 GAQELRPDLRSYQGLVHSYLQF---------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-----A--SGREKAK  438 (514)
Q Consensus       375 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~--~~~~~A~  438 (514)
                      ++++.+|+..++..+|.++...         |++++|+..++++++.+|+++.++..+|.++...     .  |++++|+
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            9999999988899999999999         9999999999999999999999999999999862     1  7799999


Q ss_pred             HHHHHHHhhCC---CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276          439 KFYESALRLEP---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       439 ~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      ..|+++++++|   +++.+++.+|.++...|++++|+..|+++++..|++. ++..++.++..+|++++|++.+.+
T Consensus       242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999   9999999999999999999999999999999999985 999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=1.6e-22  Score=173.48  Aligned_cols=210  Identities=15%  Similarity=0.104  Sum_probs=117.8

Q ss_pred             HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK  294 (514)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (514)
                      ...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            33444556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             Hh-CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276          295 VK-CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       295 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                      .. |++++|+..+++++. .|                              ..|..+.++..+|.++...|++++|+..+
T Consensus        88 ~~~~~~~~A~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALA-DP------------------------------TYPTPYIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHT-ST------------------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHc-Cc------------------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66 666666666666665 11                              22333344444455555555555555555


Q ss_pred             HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP-QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      +++++..|++ .++..+|.++...|++++|+..+++++...| +++..+..++.++... |+.++|..+++.+.+.+|++
T Consensus       137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~p~~  215 (225)
T 2vq2_A          137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-GNAQAAYEYEAQLQANFPYS  215 (225)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCC
Confidence            5555555443 4455555555555555555555555555555 5555555555555544 55555555555555555555


Q ss_pred             hHHHH
Q 010276          452 LGAAL  456 (514)
Q Consensus       452 ~~~~~  456 (514)
                      +.+..
T Consensus       216 ~~~~~  220 (225)
T 2vq2_A          216 EELQT  220 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=6.7e-23  Score=184.52  Aligned_cols=220  Identities=14%  Similarity=0.093  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHh
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAI-------IGKN-------DEAILNFEKVRS-IDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~  296 (514)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            577778888888888888888888777763       4665       777777777777 5777777777777777777


Q ss_pred             CChhHHHHHHHHHhhcCCCChH-HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cCChHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRPEAAVIAF  373 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~  373 (514)
                      |++++|...|+++++..|.++. +|..++.++.. |++++|+..|+++++..|....++...+.+... .|++++|...|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777777777777777777765 67777776655 777777777777777777666666555544332 57777777777


Q ss_pred             HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---MP-QSAKALKLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      +++++..|++ ..|..++..+...|++++|...|++++..   .| +...+|..++..+... |+.++|...++++++..
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence            7777777766 66777777777777777777777777764   34 2566677777777666 77777777777777777


Q ss_pred             CCCh
Q 010276          449 PGYL  452 (514)
Q Consensus       449 ~~~~  452 (514)
                      |+++
T Consensus       272 p~~~  275 (308)
T 2ond_A          272 REEY  275 (308)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            7644

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.92  E-value=4.5e-22  Score=176.14  Aligned_cols=228  Identities=13%  Similarity=0.078  Sum_probs=207.9

Q ss_pred             HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      ....+.+|..+...|++++|+..|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++..+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            33456669999999999999999999998  7888999999999999    999999999999999885  789999999


Q ss_pred             HHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276          291 MLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLL  361 (514)
Q Consensus       291 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      .++..    .+++++|+..++++++.  +++.++..+|.++..     +++++|+.+|+++++..  ++.++..+|.++.
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            99999    99999999999999987  489999999998874     89999999999999876  5788999999999


Q ss_pred             h----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----
Q 010276          362 S----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----  429 (514)
Q Consensus       362 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----  429 (514)
                      .    .+++++|+..|+++++.. +..++..+|.++..    .+++++|+.+++++++..|  +.++..+|.++..    
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~  234 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV  234 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence            8    999999999999999874 34789999999999    9999999999999999866  8899999999998    


Q ss_pred             cCCChHHHHHHHHHHHhhCCCChHH
Q 010276          430 NASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      . +++++|+.+|+++++.+|.++..
T Consensus       235 ~-~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          235 T-RNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             S-CCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             c-cCHHHHHHHHHHHHHcCCHHHHH
Confidence            7 99999999999999999865443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.92  E-value=6.5e-23  Score=191.08  Aligned_cols=231  Identities=13%  Similarity=0.015  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-------h
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSI---DPY---IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------P  317 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~  317 (514)
                      .++.+|.++...|++++|+..|+++++.   .++   ...++..+|.++...|++++|+..+.++++..+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445788888888888888888888776   222   35677888888888888888888888887764433       3


Q ss_pred             HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc------hhHHHHHHHHHhcCChHHHHHHHHHhHhh-----c-CCh-
Q 010276          318 EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----R-PDL-  383 (514)
Q Consensus       318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~-  383 (514)
                      .++..+|.++.. |++++|+.++++++...|...      .++.++|.++...|++++|+.++++++++     + |.. 
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            467778887777 888888888888888766543      47888999999999999999999999884     4 444 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAM-----PQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                      .++..+|.++...|++++|..++++++...     |.....+..+|.++... |+   +.+|+..+++. ...|....++
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~al~~~~~~-~~~~~~~~~~  342 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG-PDEEAIQGFFDFLESK-MLYADLEDFA  342 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence            678999999999999999999999999874     33334467789999987 88   78888888776 3334445688


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276          456 LALAELHVIEGRNGDAVSLLERYLKDWA  483 (514)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~  483 (514)
                      ..+|.++...|++++|..+++++++...
T Consensus       343 ~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          343 IDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999988754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=4.1e-22  Score=171.27  Aligned_cols=206  Identities=9%  Similarity=0.071  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      +..++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            34444444444444444444444444444444 44444444444444444444444444444444444444444444444


Q ss_pred             hh-cChhHHHHHHHHHHHhcccCc-------hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHhc
Q 010276          328 ER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQF  396 (514)
Q Consensus       328 ~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~  396 (514)
                      .. |++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  + .++..+|.++...
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence            44 444444444444444444444       34566666666667777777777777666666  5 5666666666544


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      |     ...++++....+.+...+.  +...... +.+++|+.+|+++++++|+++.+...++.+.
T Consensus       167 ~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~-~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          167 G-----ADVLRKATPLASSNKEKYA--SEKAKAD-AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             H-----HHHHHHHGGGTTTCHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHhcccCCHHHHH--HHHHHHH-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            3     2334455555554433332  2223333 5667777777777777777766666665553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=3.9e-23  Score=204.05  Aligned_cols=172  Identities=17%  Similarity=0.223  Sum_probs=144.0

Q ss_pred             cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276          312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL  389 (514)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l  389 (514)
                      ..|++++++.++|.++.. |++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ .++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            357778888888888777 888888888888888888888888888888888888888888888888888887 778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChh
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNG  469 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  469 (514)
                      |.++..+|++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++++|+++.++.++|.++...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            88888888888888888888888888888888888888887 88888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhCCC
Q 010276          470 DAVSLLERYLKDWAD  484 (514)
Q Consensus       470 ~A~~~~~~~~~~~~~  484 (514)
                      +|.+.+++++++.|+
T Consensus       163 ~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          163 DYDERMKKLVSIVAD  177 (723)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChh
Confidence            888888888877664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=7.8e-23  Score=201.90  Aligned_cols=173  Identities=16%  Similarity=0.172  Sum_probs=160.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276          278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK  356 (514)
Q Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      ..|++++++..+|.++..+|++++|+..|+++++++|+++.++.++|.++.. |++++|+..|+++++++|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4688899999999999999999999999999999999999999999998888 999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE  435 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  435 (514)
                      |.++..+|++++|+..|+++++++|++ .++.++|.++..+|++++|+..|+++++++|+++.++.++|.++... |+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~-g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc-ccHH
Confidence            999999999999999999999999998 88999999999999999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHhhCCCC
Q 010276          436 KAKKFYESALRLEPGY  451 (514)
Q Consensus       436 ~A~~~~~~a~~~~~~~  451 (514)
                      +|++.+++++++.|+.
T Consensus       163 ~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          163 DYDERMKKLVSIVADQ  178 (723)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhH
Confidence            9999999998876653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=3.6e-22  Score=171.63  Aligned_cols=209  Identities=14%  Similarity=0.077  Sum_probs=179.6

Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC-CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG  357 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                      +.++..+..+|.++...|++++|+..|++++...| .++.+++.+|.++.. |++++|+..++++++.+|.++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            55678999999999999999999999999999998 888899999998888 9999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhHhhcCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 010276          358 NLLLSMKRPEAAVIAFRGAQELRPDLR--------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLVGDVH  427 (514)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~  427 (514)
                      .++...|++++|+..|+++++..|++.        ++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            999999999999999999999999863        4788999999999999999999999999999  889999999999


Q ss_pred             HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHH
Q 010276          428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA  496 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~  496 (514)
                      ... |     ...++++..+.+..+..+  .+......+.+++|+.++++++++.|++. +...++.+..
T Consensus       164 ~~~-~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          164 YNN-G-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHH-H-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHH-H-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            876 4     345667777776665444  34445566789999999999999999985 6666666643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=5.2e-23  Score=186.09  Aligned_cols=247  Identities=16%  Similarity=0.150  Sum_probs=134.2

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh----
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI----  278 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----  278 (514)
                      ++..+..+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++..    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4555555666666666666666666666666653        4444556666666666666666666666666654    


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHH-HhcccCchhH
Q 010276          279 ----DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSI-RIDERHIPGY  353 (514)
Q Consensus       279 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~  353 (514)
                          .|....++..+|.++...|++++|+..+++++....                          +.. ...|....++
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------------------------KVLGKDHPDVAKQL  156 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--------------------------HHHCTTCHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------------------------HhcCCCChHHHHHH
Confidence                233344455555555555555555555555443210                          000 0013334455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHhh--------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------
Q 010276          354 IMKGNLLLSMKRPEAAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---------  415 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------  415 (514)
                      ..+|.++...|++++|+..+++++..        .|.. .++..+|.++...|++++|+..+++++...|.         
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            56666666666666666666666655        2222 34566666666666666666666666654322         


Q ss_pred             C------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          416 S------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       416 ~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      .      ...+...+..+... +.+.+|...+.++....|..+.++..+|.++...|++++|+.++++++++.|.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDG-TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCHHHHHHHHHHC--------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHhcCchhhH-HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            1      12222333333343 56666777777777777777777777777777777777777777777776654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.89  E-value=1.3e-20  Score=165.51  Aligned_cols=230  Identities=8%  Similarity=0.032  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhCChhHHHHH
Q 010276          232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVKCDYSKLSKL  305 (514)
Q Consensus       232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~  305 (514)
                      ++|+..+++++..+|++..+|..++.++...|  ++++++..+..++..+|++..+|...+.++    ...+.       
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-------  122 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-------  122 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-------
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-------
Confidence            35555555555555555555555555555555  555555555555555555555555555554    32200       


Q ss_pred             HHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH--HHHHHHHHhHhhcCCh
Q 010276          306 VHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE--AAVIAFRGAQELRPDL  383 (514)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~  383 (514)
                                             .+++++++.+++++++.+|.+..+|..++.+....|.++  ++++.++++++.+|.+
T Consensus       123 -----------------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          123 -----------------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             -----------------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             -----------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence                                   034556666666666666666666666666666666666  6666666666666665


Q ss_pred             -HHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhC---CCCh
Q 010276          384 -RSYQGLVHSYLQFSK------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLE---PGYL  452 (514)
Q Consensus       384 -~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~---~~~~  452 (514)
                       .+|...+.+....+.      ++++++++++++..+|++..+|+.++.++... |+. ++...++.+++.++   |.++
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~  258 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSS  258 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCH
Confidence             566666666666665      77777777777777777777777777777776 554 33445666666555   6677


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHh-hCCCch-HHHHHH
Q 010276          453 GAALALAELHVIEGRNGDAVSLLERYLK-DWADDS-LHVKLA  492 (514)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l~  492 (514)
                      .++..++.++.+.|+.++|+++++.+.+ .+|... .|...+
T Consensus       259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            7777777777777777777777777775 566653 554444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.89  E-value=4.5e-21  Score=178.17  Aligned_cols=294  Identities=16%  Similarity=0.072  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHH----HHhCChHHHH---------HHHHHHHhhCCC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVD----AIIGKNDEAI---------LNFEKVRSIDPY  281 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~----~~~~~~~~A~---------~~~~~~~~~~~~  281 (514)
                      .+..-......+++++|..+++++.+..+   .+..+....+...    ...+.+..+.         ..++++-.....
T Consensus        15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~   94 (378)
T 3q15_A           15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK   94 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence            33334455788999999999998866332   3444443222222    1223332222         444444322111


Q ss_pred             -C----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC------ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276          282 -I----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       282 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~  349 (514)
                       +    ...++..|..+...|++++|+..+++++...+.      ...++..+|.++.. |++++|+.++++++...+..
T Consensus        95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence             1    225677899999999999999999999886432      35678889998888 99999999999999876543


Q ss_pred             -------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 010276          350 -------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMK----  411 (514)
Q Consensus       350 -------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----  411 (514)
                             ..++..+|.++...|++++|+..|+++++..+   +.    .++.++|.++...|++++|+.++++++.    
T Consensus       175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence                   34678999999999999999999999998743   21    4689999999999999999999999999    


Q ss_pred             -hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHcCC---hhHHHHHHHHHHhhC
Q 010276          412 -AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-----GYLGAALALAELHVIEGR---NGDAVSLLERYLKDW  482 (514)
Q Consensus       412 -~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~  482 (514)
                       .+|..+.++..+|.++... |++++|+.++++++++.+     .....+..++.++...|+   +.+|+..+++.- ..
T Consensus       255 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~  332 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LH  332 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CH
T ss_pred             hCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-Ch
Confidence             7788899999999999999 999999999999999843     334466778888888888   888888887731 11


Q ss_pred             CC-chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          483 AD-DSLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       483 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      |. ..++..+|.+|...|++++|..+|+++++
T Consensus       333 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22 24888999999999999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.88  E-value=2.5e-21  Score=170.07  Aligned_cols=211  Identities=15%  Similarity=0.049  Sum_probs=143.6

Q ss_pred             hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC---hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC---
Q 010276          277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR---PEVFVALSVLWER-KDERGALSYAEKSIRIDERH---  349 (514)
Q Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~---  349 (514)
                      ...|.++..++.+|..+...|++++|+..|++++...|.+   +.+++.+|.++.. |++++|+..|+++++..|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            3456666666777777777777777777777776666666   5666666666655 66666666666666665543   


Q ss_pred             chhHHHHHHHHHh--------cCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276          350 IPGYIMKGNLLLS--------MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL  420 (514)
Q Consensus       350 ~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  420 (514)
                      +.+++.+|.++..        .|++++|+..|+++++..|++ .+...+..+...                 .+.....+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-----------------~~~~~~~~  151 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-----------------RAKLARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-----------------HHHHHHHH
Confidence            3355666666666        666666666666666666654 222111111100                 01112235


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHc----------CChhHHHHHHHHHHhhCCCc--
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRLEPG---YLGAALALAELHVIE----------GRNGDAVSLLERYLKDWADD--  485 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~~~~--  485 (514)
                      +.+|.++... |++++|+..|+++++..|+   .+.+++.+|.++...          |++++|+..|+++++..|++  
T Consensus       152 ~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          152 YEAARLYERR-ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            8889999998 9999999999999999888   456889999999877          88899999999999999987  


Q ss_pred             --hHHHHHHHHHHHhccHHHHH
Q 010276          486 --SLHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       486 --~~~~~l~~~~~~~g~~~~A~  505 (514)
                        .+...++.++...|+++++.
T Consensus       231 ~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          231 LRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Confidence              36777888888888876654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.88  E-value=3.6e-20  Score=162.66  Aligned_cols=216  Identities=10%  Similarity=-0.024  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHh
Q 010276          266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRI  345 (514)
Q Consensus       266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~  345 (514)
                      ++|+..+.+++.++|++..+|...+.++...|.                               .++++++..++.++..
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-------------------------------~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPN-------------------------------RNLYDELDWCEEIALD   98 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-------------------------------SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-------------------------------ccHHHHHHHHHHHHHH
Confidence            467777777777777777777777766666651                               1445555555555555


Q ss_pred             cccCchhHHHHHHHH----Hhc---CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCC
Q 010276          346 DERHIPGYIMKGNLL----LSM---KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK--EALYAAREAMKAMPQ  415 (514)
Q Consensus       346 ~~~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~  415 (514)
                      +|++..+|..++.++    ...   +++++++..+.++++.+|.+ .+|...+.+....|.++  ++++.++++++.+|.
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence            566666666665555    444   78999999999999999998 89999999999999998  999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhH-HHHHHHHHHhhC---CCc
Q 010276          416 SAKALKLVGDVHASNASG------REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD-AVSLLERYLKDW---ADD  485 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~---~~~  485 (514)
                      +..+|..++.++... +.      ++++++++.+++..+|++..+|..++.++...|+..+ ....++++++..   |.+
T Consensus       179 N~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s  257 (306)
T 3dra_A          179 NNSAWSHRFFLLFSK-KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS  257 (306)
T ss_dssp             CHHHHHHHHHHHHSS-GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred             CHHHHHHHHHHHHhc-cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence            999999999999988 76      8999999999999999999999999999999999655 556777777765   555


Q ss_pred             -hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          486 -SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       486 -~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                       .++..++.++.+.|+.++|+++|+++.+
T Consensus       258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          258 SFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence             4999999999999999999999999864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=3.6e-22  Score=180.60  Aligned_cols=254  Identities=15%  Similarity=0.093  Sum_probs=166.3

Q ss_pred             hcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc--CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 010276          169 RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH--LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--  244 (514)
Q Consensus       169 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  244 (514)
                      ..+|....++..++.++...++..++...............  ..+.....+..+|.++...|++++|+..+++++..  
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            44677788899999999999999999999988875322111  24556667788899999999999999999999986  


Q ss_pred             ------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276          245 ------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL  310 (514)
Q Consensus       245 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  310 (514)
                            .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  35567899999999999999999999999999873        4445667777778877888777777777776


Q ss_pred             hc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhccc---------CchhHHHHHHHHHhcCChHHHHHH
Q 010276          311 SI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER---------HIPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       311 ~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      ..        .|....++..+|.++.. |++++|+.++++++...|.         ....+...                
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------------  244 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------------  244 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------
Confidence            65        33333444444444444 5555555555555443222         00011000                


Q ss_pred             HHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          373 FRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                                 ..+...+..+...+.+.+|...++++....|..+.++..+|.++... |++++|+.+|++++++.|+
T Consensus       245 -----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          245 -----------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ-GKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -----------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHC-
T ss_pred             -----------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhc
Confidence                       11233344444455666666677777777777777777777777777 7777777777777776654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.88  E-value=7.4e-21  Score=171.82  Aligned_cols=370  Identities=11%  Similarity=0.061  Sum_probs=198.1

Q ss_pred             hhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccC
Q 010276           15 GLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRS   94 (514)
Q Consensus        15 ~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   94 (514)
                      |..+.|...++.+             ..+.+|..+|.++.+.|++++|++.|.++     .++..+...+.++...|.++
T Consensus        17 ~~ld~A~~fae~~-------------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~E   78 (449)
T 1b89_A           17 GNLDRAYEFAERC-------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE   78 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhC-------------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHH
Confidence            4466666665543             22359999999999999999999999774     35556777778888889999


Q ss_pred             CCCccccc--ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 010276           95 SSPNSFNV--SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP  172 (514)
Q Consensus        95 ~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  172 (514)
                      ++...+..  ....++.+...++.+|.++|++.++.+.++.    | +..++..+|..+...|++++|+..|.++    +
T Consensus        79 eAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~  149 (449)
T 1b89_A           79 ELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----S  149 (449)
T ss_dssp             ------------------------------CHHHHTTTTTC----C-----------------CTTTHHHHHHHT----T
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh----h
Confidence            99986632  2334466778899999999999998877753    3 3459999999999999999999999976    1


Q ss_pred             CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 010276          173 FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHIL  252 (514)
Q Consensus       173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  252 (514)
                          .+.                                        .+|.++.+.|++++|++.++++     .++.+|
T Consensus       150 ----n~~----------------------------------------~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W  180 (449)
T 1b89_A          150 ----NFG----------------------------------------RLASTLVHLGEYQAAVDGARKA-----NSTRTW  180 (449)
T ss_dssp             ----CHH----------------------------------------HHHHHHHTTTCHHHHHHHHHHH-----TCHHHH
T ss_pred             ----hHH----------------------------------------HHHHHHHHhccHHHHHHHHHHc-----CCchhH
Confidence                222                                        3389999999999999999998     478999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---  329 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---  329 (514)
                      .....++...|+++.|..+...+ ...|+   -...++.+|.+.|++++|+.++++++..++.+...+..+|.++..   
T Consensus       181 k~v~~aCv~~~ef~lA~~~~l~L-~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p  256 (449)
T 1b89_A          181 KEVCFACVDGKEFRLAQMCGLHI-VVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTTTT-TTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHH-HhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence            99999999999999998777753 34444   455688999999999999999999999999999999999999998   


Q ss_pred             cChhHHHHHHHHHHHhcc-----cCchhHHHHHHHHHhcCChHHHHHHHHHhHhh------------cCCh-HHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------RPDL-RSYQGLVH  391 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~-~~~~~l~~  391 (514)
                      ++..+.++.|...+.+.|     .++..|..+..+|...++++.|+...-.....            .+.+ +.++....
T Consensus       257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~  336 (449)
T 1b89_A          257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ  336 (449)
T ss_dssp             HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHH
Confidence            677788888888888888     78999999999999999999998766554322            2333 55666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276          392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (514)
                      .|.  +....++..+..++.-.-+..    .....+.+. |...-...+++.+..  .++..+--.+-.++...++++.=
T Consensus       337 fyl--~~~p~~l~~ll~~l~~~ld~~----r~v~~~~~~-~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~l  407 (449)
T 1b89_A          337 FYL--EFKPLLLNDLLMVLSPRLDHT----RAVNYFSKV-KQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQAL  407 (449)
T ss_dssp             HHH--HHCGGGHHHHHHHHGGGCCHH----HHHHHHHHT-TCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH--hcCHHHHHHHHHHHHhccCcH----HHHHHHHHc-CCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHH
Confidence            665  444455666666662211211    222333444 777777777755543  34566677788888888888654


Q ss_pred             HH
Q 010276          472 VS  473 (514)
Q Consensus       472 ~~  473 (514)
                      ..
T Consensus       408 r~  409 (449)
T 1b89_A          408 RT  409 (449)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=4.2e-20  Score=171.64  Aligned_cols=230  Identities=13%  Similarity=0.050  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-------h
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDP------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------P  317 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~  317 (514)
                      .++.+|..+...|++++|+..|+++++..+      ....++..+|.++...|+++.|+..+++++...+..       .
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            344556666666666666666666665421      124456666666666666666666666666543321       2


Q ss_pred             HHHHHHHHHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHh-----hcCCh-H
Q 010276          318 EVFVALSVLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQE-----LRPDL-R  384 (514)
Q Consensus       318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-~  384 (514)
                      .++..+|.++.. |++++|+.++++++...+.      ...++.++|.++...|++++|+.++++++.     .+|.. .
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            345566666666 7777777777777765332      234677888888888888888888888887     45555 5


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMP-----QSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      ++..+|.++...|++++|+.++++++...+     .....+..++.++... ++   +.+|+..+++. ...|....++.
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~-~~~~~~~~al~~~~~~-~~~~~~~~~~~  340 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET-VDERKIHDLLSYFEKK-NLHAYIEACAR  340 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence            688888888888888888888888888743     3345566777777776 77   77777777762 22334455777


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      .+|.++...|++++|..+|+++++..
T Consensus       341 ~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          341 SAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999887754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.87  E-value=1.9e-21  Score=175.66  Aligned_cols=352  Identities=11%  Similarity=0.049  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276          109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP  188 (514)
Q Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  188 (514)
                      +++..+|..+...|++++|+..+.+.    .++..+...+..+...|++++|+.+++.+.+..|+ +.+...++.++...
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl  107 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT  107 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence            35666666666777777777666542    35556666666666677777777766666654333 44455555555555


Q ss_pred             ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276          189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA  268 (514)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  268 (514)
                      ++..++.+....     |       ........|..+...|+|++|..+|.++        ..+..+|.++.++|++++|
T Consensus       108 g~l~e~e~f~~~-----p-------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A  167 (449)
T 1b89_A          108 NRLAELEEFING-----P-------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA  167 (449)
T ss_dssp             -CHHHHTTTTTC-----C-----------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred             CCHHHHHHHHcC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence            555443322211     0       1113445599999999999999999977        4688999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc
Q 010276          269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE  347 (514)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~  347 (514)
                      ++.++++     .++.+|...+.++...|+++.|..+...+. .   +|+-...+..+|.. |.+++|+.++++++..++
T Consensus       168 Vea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~  238 (449)
T 1b89_A          168 VDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLER  238 (449)
T ss_dssp             HHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence            9999999     478899999999999999999977766522 3   44445567777777 999999999999999999


Q ss_pred             cCchhHHHHHHHHHh--cCChHHHHHHHHHhHhhcC-----Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 010276          348 RHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRP-----DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA-------  412 (514)
Q Consensus       348 ~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------  412 (514)
                      .+...+..+|.++.+  .++..+.++.|...+.+.|     +. ..|..++.+|...++++.|+...-+....       
T Consensus       239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f  318 (449)
T 1b89_A          239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF  318 (449)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH
Confidence            999999999988865  4567777888777766666     33 67999999999999999998866554332       


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH--hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          413 -----MPQSAKALKLVGDVHASNASGREKAKKFYESAL--RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       413 -----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                           .+.+.++++.....|.   +....++..+..++  +++++      .....+.+.|+..-...+++.+... ...
T Consensus       319 ~~~~~kv~n~elyYkai~fyl---~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~~-n~~  388 (449)
T 1b89_A          319 KDIITKVANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQNH-NNK  388 (449)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHH---HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHTT-CCH
T ss_pred             HHHHhchhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHHh-hHH
Confidence                 4667888888888777   44566788888888  44442      3445667888888888888665432 233


Q ss_pred             hHHHHHHHHHHHhccHHHH
Q 010276          486 SLHVKLAQVFAATNMLQEA  504 (514)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A  504 (514)
                      .+.-.+-.+|....+++.=
T Consensus       389 ~vnealn~l~ieeed~~~l  407 (449)
T 1b89_A          389 SVNESLNNLFITEEDYQAL  407 (449)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHH
Confidence            4666677788888877543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.87  E-value=6.7e-20  Score=170.18  Aligned_cols=268  Identities=13%  Similarity=0.008  Sum_probs=183.0

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MT  284 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~  284 (514)
                      ......|.++...|++++|+..+++++...|.+.     .++..+|.++...|++++|...+++++...|..      ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3445678888888999999999999888776542     256778888888899999999998888765543      23


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcC--------CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC-----c
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSID--------PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-----I  350 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~  350 (514)
                      ++..+|.++...|++++|+..+++++...        |.....+..+|.++.. |++++|..++++++...|..     .
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            35677888888888888888888887653        2223455566666655 77777777777777765542     2


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HH
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQ-----GLVHSYLQFSKVKEALYAAREAMKAMPQS----AK  418 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~  418 (514)
                      .++..+|.++...|++++|...+++++...+.  . ..+.     ..+.++...|++++|...+++++...|..    ..
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            34666777777777777777777777765322  1 1111     23444667777777777777777655432    23


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      .+..+|.++... |++++|...+++++...+..      ..++..+|.++...|++++|...+++++...+.
T Consensus       255 ~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          255 QWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            456677777776 77777777777776653321      235666777777777777777777777766544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.87  E-value=9e-21  Score=188.68  Aligned_cols=185  Identities=10%  Similarity=-0.073  Sum_probs=166.2

Q ss_pred             hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC
Q 010276          244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR--------SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS  315 (514)
Q Consensus       244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  315 (514)
                      .+|+++.+++..+   ...|++++|++.+++++        +.+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            5777877777666   77899999999999999        888999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276          316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY  393 (514)
Q Consensus       316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~  393 (514)
                      ++.+++.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++ .+++++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            99999999998888 999999999999999999999999999999999999999 99999999999998 8899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG  433 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  433 (514)
                      ...|++++|+..|+++++.+|++..++.++|.++... ++
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~-~~  583 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG-RS  583 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc-CC
Confidence            9999999999999999999999999999999998765 55

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.87  E-value=1.1e-17  Score=163.15  Aligned_cols=210  Identities=8%  Similarity=-0.019  Sum_probs=102.4

Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHH-HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276          303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR  380 (514)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  380 (514)
                      ...|++++...|..+..|...+..... |+.++|. ..|++++...|.+...|...+.+....|+++.|..+|++++...
T Consensus       329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            344555555555555555555554444 4444554 55555555555554455555555555555555555555554421


Q ss_pred             -----------CC-----------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCCChHH
Q 010276          381 -----------PD-----------L-RSYQGLVHSYLQFSKVKEALYAAREAMKA-MPQSAKALKLVGDVHASNASGREK  436 (514)
Q Consensus       381 -----------~~-----------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~  436 (514)
                                 |.           . .+|...+....+.|..+.|..+|.++++. .+....++...+.+.....++.+.
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~  488 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT  488 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence                       21           1 23444444444555555555555555544 222334444444443333123455


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC---c-hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276          437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYEAAL  512 (514)
Q Consensus       437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~al  512 (514)
                      |...|+++++..|+++..|...+......|+.+.|..+|++++...|+   . .+|......-...|+.+.+...++++.
T Consensus       489 Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~  568 (679)
T 4e6h_A          489 ACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF  568 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555442   1 244444444445555555555555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=3e-21  Score=192.08  Aligned_cols=185  Identities=15%  Similarity=0.071  Sum_probs=124.7

Q ss_pred             cCCCChHHHHHHHHHHhhcChhHHHHHHHHHH--------HhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276          312 IDPSRPEVFVALSVLWERKDERGALSYAEKSI--------RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL  383 (514)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (514)
                      .+|+++..++..+  ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus       389 ~~p~~~~a~~~~a--~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          389 VDPTDVAASVLQA--TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             CCTTSTTHHHHHH--TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCcchHHhhc--ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            4566666555544  33366777777777776        6667777777777777777777777777777777777766


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                       .+|+.+|.++...|++++|+..|+++++.+|+++.++.++|.++... |++++ +..|+++++++|+++.+++++|.++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence             66777777777777777777777777777777777777777777776 77777 7777777777777777777777777


Q ss_pred             HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          463 VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       463 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      ...|++++|+..|+++++.+|++. +++.+|.++...|+
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            777777777777777777777653 66667766655333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=2.6e-20  Score=163.49  Aligned_cols=190  Identities=15%  Similarity=0.114  Sum_probs=109.8

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MT  284 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~  284 (514)
                      .+......+.+|..++..|++++|+..|+++++.+|++   +.+++.+|.++...|++++|+..|+++++..|++   +.
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            34444555666666666666666666666666666666   6666666666666666666666666666665543   44


Q ss_pred             HHHHHHHHHHH--------hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHH
Q 010276          285 YMDEYAMLLKV--------KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMK  356 (514)
Q Consensus       285 ~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      +++.+|.++..        .|++++|+..|++++...|+++.+...+..+...                .+.....++.+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~----------------~~~~~~~~~~l  154 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL----------------RAKLARKQYEA  154 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence            56666666666        6666666666666666666655443333221111                01112224556


Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCC
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQF----------SKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~  416 (514)
                      |.++...|++++|+..|+++++..|+.    .++..+|.++...          |++++|+..|+++++.+|++
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            666666666666666666666665552    3455566666544          44555555555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.86  E-value=1.1e-20  Score=159.32  Aligned_cols=173  Identities=10%  Similarity=0.053  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE----------------MAKVDAIIGKNDEAILNFEKVRSIDPY  281 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~~~~  281 (514)
                      .+..|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.+|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            4566888999999999999999999999999888888                888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--ChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. +  +...+...+.+++...|. ..+++.+|.
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~  165 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL  165 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence            888888888888888888888888888888888888888888877654 3  334566666666543332 235666777


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVH  391 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~  391 (514)
                      ++...|++++|+..|++++++.|+..+...+..
T Consensus       166 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          166 SKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            777777777777777777777777654443433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.86  E-value=1.3e-20  Score=158.86  Aligned_cols=177  Identities=11%  Similarity=0.070  Sum_probs=152.4

Q ss_pred             ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH----------------HHHHHHhcCChHHHHHHHHHhHh
Q 010276          316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM----------------KGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                      +++.+...|..+.. |++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677778887776 99999999999999999999999999                99999999999999999999999


Q ss_pred             hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhhCCCChHHH
Q 010276          379 LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG--REKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       379 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                      .+|++ .++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++... |+  ...+...+.+++...|. ..++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~a~  160 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT-AEQEKKKLETDYKKLSSPTKM-QYAR  160 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCCch-hHHH
Confidence            99998 88999999999999999999999999999999999999999998765 54  45677778777643332 3477


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHH
Q 010276          456 LALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV  494 (514)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~  494 (514)
                      +.+|.++...|++++|+..|++++++.|++.....+..+
T Consensus       161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            889999999999999999999999999997766555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=3.7e-21  Score=152.58  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR  434 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  434 (514)
                      +|.++...|++++|+..+++++...|+. ..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++... |++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-ENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-Cch
Confidence            4566666666666666666666666655 45666666666666666666666666666666666677777776666 667


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHH-HHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL-LERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      ++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|++. ++..++.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            7777777777777776666666677766666666655544 466666666664 55555666665553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=6.9e-21  Score=150.99  Aligned_cols=144  Identities=15%  Similarity=0.083  Sum_probs=128.4

Q ss_pred             HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHH
Q 010276          323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK  400 (514)
Q Consensus       323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  400 (514)
                      ||.++.. |++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|++ .+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            5566655 888999999999999999999999999999999999999999999999999998 88999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH-HHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF-YESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      +|+..|+++++++|+++.+++.+|.++... |++++|... ++++++++|+++.++..++.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999998 998776665 589999999999999999999888875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=3.4e-20  Score=165.29  Aligned_cols=225  Identities=10%  Similarity=0.008  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276          233 GGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL  309 (514)
Q Consensus       233 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  309 (514)
                      +|.+++.++-+.-+.....+     .++..   +++++|+..|+++              +.++...|++++|+..|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            46667777766655432222     11122   1477777777776              44566777777777777777


Q ss_pred             hhcCCC------ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhc-CChHHHHHHHHH
Q 010276          310 LSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSM-KRPEAAVIAFRG  375 (514)
Q Consensus       310 ~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~  375 (514)
                      +...+.      ...++..+|.++.. |++++|+.++++++.+.|..      ..++..+|.++... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            665321      13455666666655 66666666666666665543      23455666666664 666666666666


Q ss_pred             hHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHhcCCChHHHHHHH
Q 010276          376 AQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-------ALKLVGDVHASNASGREKAKKFY  441 (514)
Q Consensus       376 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~A~~~~  441 (514)
                      ++++.|..       .++..+|.++..+|++++|+..|++++...|++..       .+..+|.++... |++++|+..|
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~  222 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTL  222 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            66655431       23555666666666666666666666666555432       455566666665 6666666666


Q ss_pred             HHHHhhCCCChHH-----HHHHHHHHH--HcCChhHHHHHHHH
Q 010276          442 ESALRLEPGYLGA-----ALALAELHV--IEGRNGDAVSLLER  477 (514)
Q Consensus       442 ~~a~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~  477 (514)
                      +++++++|+....     +..++..+.  ..+++++|+..|++
T Consensus       223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~  265 (292)
T 1qqe_A          223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (292)
T ss_dssp             HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence            6666666654432     223333332  23445555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=2.4e-20  Score=166.20  Aligned_cols=216  Identities=13%  Similarity=0.019  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCChhHHHH
Q 010276          231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IMTYMDEYAMLLKVKCDYSKLSK  304 (514)
Q Consensus       231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~  304 (514)
                      +++|+..|+++              |.++...|++++|+..|++++++.+.      ...++..+|.++...|++++|+.
T Consensus        33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   98 (292)
T 1qqe_A           33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD   98 (292)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            66666666555              45566677777777777777765321      14566777777777777777777


Q ss_pred             HHHHHhhcCCCC------hHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHH
Q 010276          305 LVHDLLSIDPSR------PEVFVALSVLWER--KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAV  370 (514)
Q Consensus       305 ~~~~~~~~~~~~------~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~  370 (514)
                      ++++++.+.|..      ..++..+|.++..  |++++|+.+|++++++.|..      ..++..+|.++...|++++|+
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            777777665433      3456667776664  77777777777777776653      345666777777777777777


Q ss_pred             HHHHHhHhhcCCh-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--hcCCChH
Q 010276          371 IAFRGAQELRPDL-R-------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA-----LKLVGDVHA--SNASGRE  435 (514)
Q Consensus       371 ~~~~~~~~~~~~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~~~~~~  435 (514)
                      ..|+++++..|+. .       .+..+|.++...|++++|+..|++++.++|+....     +..++..+.  .. ++++
T Consensus       179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~-~~~~  257 (292)
T 1qqe_A          179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS-EQLS  257 (292)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT-TTHH
T ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH-HHHH
Confidence            7777777766653 1       35667777777777777777777777777665432     333444443  22 5667


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          436 KAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       436 ~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                      +|+..|++++.++|....++..+-..
T Consensus       258 ~A~~~~~~~~~l~~~~~~~~~~~k~~  283 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKWKITILNKIKES  283 (292)
T ss_dssp             HHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHHHHHHHHHHHHHH
Confidence            77777777766666655555444433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.85  E-value=4e-19  Score=164.95  Aligned_cols=264  Identities=14%  Similarity=0.047  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------  317 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------  317 (514)
                      ..+...+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|...      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            46777888999999999999999999998877552     2577889999999999999999999988655432      


Q ss_pred             HHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--------cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----
Q 010276          318 EVFVALSVLWER-KDERGALSYAEKSIRIDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----  383 (514)
Q Consensus       318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----  383 (514)
                      .++..+|.++.. |++++|+..+++++...+        .....+..+|.++...|++++|...+++++...|..     
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            235667777776 999999999999988753        234466779999999999999999999999887652     


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHhhCCCC----
Q 010276          384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALK-----LVGDVHASNASGREKAKKFYESALRLEPGY----  451 (514)
Q Consensus       384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----  451 (514)
                       .++..+|.++...|++++|...+++++...+.  .+..+.     ..+.++... |++++|...+++++...|..    
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~  252 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFL  252 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcchhh
Confidence             45788899999999999999999999876332  211121     344557777 99999999999998876653    


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC-----c--hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ...+..++.++...|++++|...+++++...+.     .  .++..+|.++...|++++|...|++++.
T Consensus       253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            235678899999999999999999999876542     1  3777889999999999999999998875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.84  E-value=6.2e-17  Score=158.02  Aligned_cols=391  Identities=12%  Similarity=0.051  Sum_probs=272.2

Q ss_pred             HHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCC
Q 010276           59 YRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSK  137 (514)
Q Consensus        59 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~  137 (514)
                      ..+-+..|++.+..+|                               .+...+..++......+.++.+..++++. ...
T Consensus        48 ~~d~i~~lE~~l~~np-------------------------------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f   96 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQP-------------------------------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF   96 (679)
T ss_dssp             CSCHHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHCc-------------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC
Confidence            4556677888888877                               45566667777777788999999999985 344


Q ss_pred             CccHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCC--CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCc
Q 010276          138 ARNLQMSLLMAKLYRNSRH---NRGAVACYKECLRHCP--FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDS  212 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (514)
                      |.....|...+......|+   ++.+..+|++++...|  .+...|..........++..                   .
T Consensus        97 P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~-------------------~  157 (679)
T 4e6h_A           97 PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII-------------------T  157 (679)
T ss_dssp             TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST-------------------T
T ss_pred             CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc-------------------c
Confidence            8899999999999889898   9999999999999984  67777766533211100000                   0


Q ss_pred             hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHH---------HhCChHHHHHHHHHHHhhC
Q 010276          213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQR----FPNNIHILLEMAKVDA---------IIGKNDEAILNFEKVRSID  279 (514)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~~~  279 (514)
                               +    ..+..+.....|++++..    +|.+..+|........         ..++.+.+..+|++++...
T Consensus       158 ---------~----~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP  224 (679)
T 4e6h_A          158 ---------G----GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP  224 (679)
T ss_dssp             ---------T----HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ---------c----cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence                     0    000112334556665542    4555556655544332         2344566777777777642


Q ss_pred             CCCH-HHHHHHHHHHH-------------HhCChhHHHHHHHHH------hhc-CCCC-------------------hHH
Q 010276          280 PYIM-TYMDEYAMLLK-------------VKCDYSKLSKLVHDL------LSI-DPSR-------------------PEV  319 (514)
Q Consensus       280 ~~~~-~~~~~l~~~~~-------------~~~~~~~A~~~~~~~------~~~-~~~~-------------------~~~  319 (514)
                      .... ..|..+...-.             ...+++.|...+...      +.. .|..                   ...
T Consensus       225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l  304 (679)
T 4e6h_A          225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI  304 (679)
T ss_dssp             CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence            2222 22221111111             112334444444332      111 1111                   123


Q ss_pred             HHHHHHHHhhc--C------hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH-HHHHHhHhhcCCh-HHHHHH
Q 010276          320 FVALSVLWERK--D------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV-IAFRGAQELRPDL-RSYQGL  389 (514)
Q Consensus       320 ~~~l~~~~~~~--~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~~-~~~~~l  389 (514)
                      |......-...  .      .......|++++...|..+..|+..+..+...|+.++|. ..|++++...|.. ..|...
T Consensus       305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~  384 (679)
T 4e6h_A          305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSL  384 (679)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            33333322221  1      234567899999999999999999999999999999997 9999999999987 668899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAM-----------PQ-----------SAKALKLVGDVHASNASGREKAKKFYESALRL  447 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  447 (514)
                      +......|++++|..+|++++...           |.           ...+|...+.+..+. |+.+.|...|.+|++.
T Consensus       385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            999999999999999999999752           43           345788888888888 9999999999999987


Q ss_pred             -CCCChHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          448 -EPGYLGAALALAELHVIEGR-NGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       448 -~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                       .+....++...+.+....|+ ++.|..+|+.+++..|++. .+...+......|+.+.|...|++++.
T Consensus       464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence             44556788888888777655 8999999999999999875 777889999999999999999999985

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.84  E-value=5.3e-18  Score=149.46  Aligned_cols=227  Identities=11%  Similarity=0.007  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--Chh
Q 010276          267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD----------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DER  333 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~  333 (514)
                      +|+..+.+++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++.. +  .++
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~  127 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA  127 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence            34444444444444444444444444444333          3455555555555555555555555555444 3  245


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCC-hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------------C
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKR-PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------------S  397 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------------~  397 (514)
                      +++.++.++++.+|.+..+|..++.+....|. +++++.++.++++.+|.+ .+|..++.++...              +
T Consensus       128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~  207 (331)
T 3dss_A          128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN  207 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH
Confidence            55555555555555555555555555555555 355666666666665555 5555555555544              3


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------ChHHHHHHHHHHHhhCCCChHHHHHHHHHHH---H
Q 010276          398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----------GREKAKKFYESALRLEPGYLGAALALAELHV---I  464 (514)
Q Consensus       398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~  464 (514)
                      .++++++++.+++..+|++..+|+.+..++....|          .++++++.+.++++..|++...+..++.+..   .
T Consensus       208 ~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~  287 (331)
T 3dss_A          208 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP  287 (331)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc
Confidence            46777777777777777777777655555444323          3578888888888888887655555544433   2


Q ss_pred             cCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276          465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQ  493 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~  493 (514)
                      .|..++...++.+.++++|... -|..++.
T Consensus       288 ~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          288 LLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             TTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            4667788888888888888764 4444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=2.7e-19  Score=148.18  Aligned_cols=166  Identities=14%  Similarity=0.048  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc
Q 010276          319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF  396 (514)
Q Consensus       319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~  396 (514)
                      .+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            33444444444 555555555555555555555555555666666666666666666666655554 5556666666666


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHH
Q 010276          397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE  476 (514)
Q Consensus       397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (514)
                      |++++|...+++++...|+++.++..+|.++... |++++|+..++++++..|+++.++..+|.++...|++++|...++
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666666666666666666666666666665 666666666666666666666666666666666666666666666


Q ss_pred             HHHhhCCCc
Q 010276          477 RYLKDWADD  485 (514)
Q Consensus       477 ~~~~~~~~~  485 (514)
                      ++++..|++
T Consensus       169 ~~~~~~~~~  177 (186)
T 3as5_A          169 KANELDEGA  177 (186)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHcCCCc
Confidence            666665554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=4.6e-19  Score=146.78  Aligned_cols=164  Identities=13%  Similarity=0.084  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      +.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|+
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   91 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK   91 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence            44455566666666666666666655665666666666666666666666666666666666555555556666666666


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      +++|...+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus        92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6666555555555555555555555555444 555555555555555555555555555555555555555555555555


Q ss_pred             hhcCC
Q 010276          378 ELRPD  382 (514)
Q Consensus       378 ~~~~~  382 (514)
                      +..|+
T Consensus       172 ~~~~~  176 (186)
T 3as5_A          172 ELDEG  176 (186)
T ss_dssp             HHHHC
T ss_pred             HcCCC
Confidence            55444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.83  E-value=1.8e-17  Score=146.16  Aligned_cols=238  Identities=11%  Similarity=0.046  Sum_probs=207.4

Q ss_pred             HHHhcCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          225 CIASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLL  293 (514)
Q Consensus       225 ~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  293 (514)
                      ....|.++ +|+..+..++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567766 79999999999999999999999999988876          68999999999999999999999999999


Q ss_pred             HHhCC--hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC-hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc------
Q 010276          294 KVKCD--YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM------  363 (514)
Q Consensus       294 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  363 (514)
                      ...|+  +++++.++.++++.+|.+..+|...+.+... |. +++++.++.+++..+|.+..+|..++.++...      
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence            99994  8999999999999999999999999998887 77 58999999999999999999999999998877      


Q ss_pred             --------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          364 --------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF-----------SKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       364 --------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                              +.++++++++.+++..+|++ .+|+.+..++...           +.++++++.++++++..|++...+..+
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~  278 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI  278 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence                    56899999999999999999 7888776666665           468999999999999999996665555


Q ss_pred             HHHHHh--cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          424 GDVHAS--NASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       424 ~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      +.+...  ..|..++...++.+.++++|....-|..++.-+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            444322  127778999999999999999877777665544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.83  E-value=8.6e-20  Score=149.48  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=132.0

Q ss_pred             cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG  424 (514)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  424 (514)
                      +|.....++.+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++...| ++..+...+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            34556677788888888888888888888888888887 7788888888888888888888888888888 777666666


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccH
Q 010276          425 DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNML  501 (514)
Q Consensus       425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~  501 (514)
                      .+.....+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|+.   .++..+|.++...|+.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            4433211344567888888888888888888888888888888888888888888888863   3888888888888888


Q ss_pred             HHHHHHHHHHhc
Q 010276          502 QEALSHYEAALR  513 (514)
Q Consensus       502 ~~A~~~~~~al~  513 (514)
                      ++|+..|++++.
T Consensus       161 ~~A~~~y~~al~  172 (176)
T 2r5s_A          161 NAIASKYRRQLY  172 (176)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            888888888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.83  E-value=1.3e-19  Score=161.30  Aligned_cols=197  Identities=15%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHhh-cChhHHHHHHHHHHHh--------cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc-------
Q 010276          317 PEVFVALSVLWER-KDERGALSYAEKSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR-------  380 (514)
Q Consensus       317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------  380 (514)
                      +.++..+|.++.. |++++|+.++++++..        .|....++..+|.++...|++++|+..|++++...       
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            4444555554444 5555555555555544        24445566677777777777777777777776652       


Q ss_pred             -CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh---
Q 010276          381 -PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSAKALKLVGDVHASNASGREKAKKFYESALRL---  447 (514)
Q Consensus       381 -~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---  447 (514)
                       |.. .++..+|.++...|++++|+.++++++..        .|....++..+|.++... |++++|+..++++++.   
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence             222 45677777777777777777777777776        555566777777777777 7777777777777765   


Q ss_pred             ------CCCChHHHHHHHHHHHHcCChhHHHHH------HHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          448 ------EPGYLGAALALAELHVIEGRNGDAVSL------LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       448 ------~~~~~~~~~~la~~~~~~g~~~~A~~~------~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                            .+.....+..++......+....+..+      ++......|.. .++..+|.+|...|++++|+.+|++++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  344445666666666655544433332      21111111222 37777888888888888888888887753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=1.2e-19  Score=161.42  Aligned_cols=230  Identities=17%  Similarity=0.175  Sum_probs=144.1

Q ss_pred             HHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHH
Q 010276          225 CIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDE  288 (514)
Q Consensus       225 ~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~  288 (514)
                      ....|++++|+..++++++.        .|..+.++..+|.++...|++++|+..++++++.        .|....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34678888888888888873        2445677888888888888888888888888765        2444556666


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHH-hcccCchhHHHHHHHHHhcCChH
Q 010276          289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      +|.++...|++++|+..+++++...                          ++... .+|....++..+|.++...|+++
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~  144 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE  144 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHH--------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            6777766666666666666665431                          00000 02344555666666666667777


Q ss_pred             HHHHHHHHhHhh--------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHh
Q 010276          368 AAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---------MPQSAKALKLVGDVHAS  429 (514)
Q Consensus       368 ~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~  429 (514)
                      +|+..+++++..        .|.. .++..+|.++...|++++|+..+++++..         .+.....+...+.....
T Consensus       145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (283)
T 3edt_B          145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES  224 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence            777766666665        3333 45666777777777777777777777664         33444555666655554


Q ss_pred             cCCCh------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          430 NASGR------EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       430 ~~~~~------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      . +..      .++...++......|..+.++..+|.++...|++++|+.+++++++.
T Consensus       225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          225 K-DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             T-CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             C-CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3 332      33333333333334555667888888888888888888888888765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=2.2e-18  Score=147.19  Aligned_cols=199  Identities=14%  Similarity=0.076  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH---HHHHH
Q 010276          250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE---VFVAL  323 (514)
Q Consensus       250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l  323 (514)
                      ..++.+|..+...|++++|+..|+++++..|.++   .+++.+|.++...|++++|+..|+++++..|+++.   +++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            3344444444444444444444444444444331   34444444444444444444444444444444432   33444


Q ss_pred             HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHH---HHHHHHHhcCC
Q 010276          324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ---GLVHSYLQFSK  398 (514)
Q Consensus       324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~---~l~~~~~~~~~  398 (514)
                      |.++.. +.                .....+..++..+...|++++|+..|+++++..|++ .++.   .++.+..    
T Consensus        85 g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~----  144 (225)
T 2yhc_A           85 GLTNMALDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD----  144 (225)
T ss_dssp             HHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----
T ss_pred             HHHHHhhhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----
Confidence            443332 10                011122334444455556666666666666666654 2221   1111110    


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCChhHHHHHH
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                                      ........+|.++... |++++|+..|+++++..|+++   .++..+|.++.++|++++|+..+
T Consensus       145 ----------------~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          145 ----------------RLAKYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             ----------------HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                            0012234566666666 777777777777777766664   45666777777777777777777


Q ss_pred             HHHHhhCCCc
Q 010276          476 ERYLKDWADD  485 (514)
Q Consensus       476 ~~~~~~~~~~  485 (514)
                      +++....|++
T Consensus       208 ~~l~~~~~~~  217 (225)
T 2yhc_A          208 KIIAANSSNT  217 (225)
T ss_dssp             HHHHHCCSCC
T ss_pred             HHHHhhCCCc
Confidence            7666666654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.81  E-value=2.4e-18  Score=146.99  Aligned_cols=198  Identities=15%  Similarity=0.125  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---hHHH
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---GYIM  355 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~~~~  355 (514)
                      +..++.+|..+...|++++|+..|++++...|.++   .+++.+|.++.. |++++|+..|+++++.+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            44556666666666666666666666666655543   455566665555 6666666666666666665543   4555


Q ss_pred             HHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE  435 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  435 (514)
                      +|.++...|..     .          ...+..++..+...|++++|+..|+++++.+|+++.++..+..+.... +.  
T Consensus        84 ~g~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-~~--  145 (225)
T 2yhc_A           84 RGLTNMALDDS-----A----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-DR--  145 (225)
T ss_dssp             HHHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-HH--
T ss_pred             HHHHHHhhhhh-----h----------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH-HH--
Confidence            55555544321     0          012334445555567777777777777777777654443222221111 00  


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                                     .......+|.++...|++++|+..|+++++..|++    .+++.+|.++.++|++++|++.++++
T Consensus       146 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          146 ---------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             ---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                           01233678999999999999999999999999986    48999999999999999999999987


Q ss_pred             hc
Q 010276          512 LR  513 (514)
Q Consensus       512 l~  513 (514)
                      ..
T Consensus       211 ~~  212 (225)
T 2yhc_A          211 AA  212 (225)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=6.3e-19  Score=134.74  Aligned_cols=117  Identities=16%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             HhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      .++|+.+..+..+|..++..|++++|+..|+++++.+|++ .+|..+|.++...|++++|+..++++++++|+++.+++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            4566666666666666666666666666666666666665 566666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                      +|.++... |++++|+..|+++++++|+++.++..++.+
T Consensus        87 lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            66666666 666666666666666666666666666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.80  E-value=1.7e-17  Score=146.69  Aligned_cols=230  Identities=14%  Similarity=0.102  Sum_probs=139.0

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-C-ChhHHHHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK-C-DYSKLSKL  305 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~  305 (514)
                      +..++|+..+++++..+|++..+|..++.++...| .+++++..++.++..+|++..+|...+.++... + ++++++.+
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            44457777777777777777777777777777777 477777777777777777777777777777776 6 67777777


Q ss_pred             HHHHhhcCCCChHHHHHHHHHHhh-cChh--------HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276          306 VHDLLSIDPSRPEVFVALSVLWER-KDER--------GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA  376 (514)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  376 (514)
                      +.++++.+|.+..+|...+.+... +.++        +++++++++++.+|.+..+|..++.++...++..         
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~---------  218 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE---------  218 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC---------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---------
Confidence            777777777777777776666555 4444        5566666666666666666666665555555410         


Q ss_pred             HhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh--------------------HH
Q 010276          377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------------EK  436 (514)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------------------~~  436 (514)
                           .            ....++++++++++++..+|++..+|+.+..++... |..                    ..
T Consensus       219 -----~------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  280 (349)
T 3q7a_A          219 -----T------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF-SLPLVPILPAILPYTASKLNPDIET  280 (349)
T ss_dssp             -----C------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSGGGHHHHGGGTC---------
T ss_pred             -----c------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCCcccccccccccccccccccchh
Confidence                 0            000044555555555555555555555555554443 322                    11


Q ss_pred             HHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHH-hhCCCc
Q 010276          437 AKKFYESALRL------EPGYLGAALALAELHVIEGRNGDAVSLLERYL-KDWADD  485 (514)
Q Consensus       437 A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~  485 (514)
                      -.......+..      .+.++.++..++.+|...|+.++|.+.++... +.+|-.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir  336 (349)
T 3q7a_A          281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR  336 (349)
T ss_dssp             -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence            11111111111      13556677777888877777778888777765 344443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=5e-19  Score=144.90  Aligned_cols=163  Identities=9%  Similarity=-0.056  Sum_probs=111.4

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      ..+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+...+.+.
T Consensus         5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~   83 (176)
T 2r5s_A            5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE   83 (176)
T ss_dssp             -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence            3345566677777777777777777777777777777777777777777777777777777777766 665554444332


Q ss_pred             hh--cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHH
Q 010276          328 ER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEA  402 (514)
Q Consensus       328 ~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A  402 (514)
                      ..  ++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.   .++..++.++...|+.++|
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            22  233456777777777777777777777777777777777777777777777653   3677777777777777777


Q ss_pred             HHHHHHHHh
Q 010276          403 LYAAREAMK  411 (514)
Q Consensus       403 ~~~~~~~~~  411 (514)
                      +..|++++.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=2.6e-18  Score=152.43  Aligned_cols=166  Identities=14%  Similarity=0.031  Sum_probs=115.8

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      |.+...+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            6666666677777777777777777777777777766 667777777777777777777777777777755555555555


Q ss_pred             HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHH
Q 010276          426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ  502 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  502 (514)
                      .+... ++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|+.   .++..++.++...|+.+
T Consensus       194 ~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          194 ELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            56565 666777777777777777777777777777777777777777777777777664   26777777777777777


Q ss_pred             HHHHHHHHHhc
Q 010276          503 EALSHYEAALR  513 (514)
Q Consensus       503 ~A~~~~~~al~  513 (514)
                      +|...|++++.
T Consensus       273 ~a~~~~r~al~  283 (287)
T 3qou_A          273 ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            77777776653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.80  E-value=6.9e-17  Score=142.89  Aligned_cols=186  Identities=12%  Similarity=0.050  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHH
Q 010276          175 IEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNIHILL  253 (514)
Q Consensus       175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~  253 (514)
                      ..++..+..+....+...+++......+      ..+|........++.++...| .+++++..++.++..+|++..+|.
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L------~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~  127 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIV------RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH  127 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH------HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence            3344444444444444455555555555      445666667778899999999 599999999999999999999999


Q ss_pred             HHHHHHHHh-C-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh--------HHHHHHHHHhhcCCCChHHHHHH
Q 010276          254 EMAKVDAII-G-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS--------KLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       254 ~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                      .++.++... + +++++++.+.++++.+|.+..+|...+.++...|.++        ++++.+.++++.+|.+..+|...
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R  207 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR  207 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999998 8 9999999999999999999999999999999999888        99999999999999999999999


Q ss_pred             HHHHhh-cC-------hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCCh
Q 010276          324 SVLWER-KD-------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP  366 (514)
Q Consensus       324 ~~~~~~-~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      +.++.. ++       ++++++++.+++..+|.+..+|+.+..++...|+.
T Consensus       208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            998887 54       67899999999999999999998888888777764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=2.2e-18  Score=131.74  Aligned_cols=120  Identities=14%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276          375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG  453 (514)
Q Consensus       375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  453 (514)
                      ++..++|+. .++..+|..+++.|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++++|+++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhH
Confidence            344578887 78999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276          454 AALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF  495 (514)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~  495 (514)
                      +++.+|.++..+|++++|+..|+++++++|++. ++..++.++
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999985 888887763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=1.2e-17  Score=148.02  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=150.4

Q ss_pred             CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHH
Q 010276          313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV  390 (514)
Q Consensus       313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~  390 (514)
                      .|.++..+..+|..+.. |++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+. ......+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            47788888888887777 999999999999999999999999999999999999999999999999999976 4456667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCh
Q 010276          391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRN  468 (514)
Q Consensus       391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~  468 (514)
                      ..+...++.++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++.+|++  ..++..++.++...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            7788888999999999999999999999999999999998 99999999999999999998  88999999999999999


Q ss_pred             hHHHHHHHHHHh
Q 010276          469 GDAVSLLERYLK  480 (514)
Q Consensus       469 ~~A~~~~~~~~~  480 (514)
                      ++|...|++++.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999998875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=1.9e-18  Score=135.75  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=97.0

Q ss_pred             HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      ..+++++.++|++ .+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++... |++++|+..|+++++++|
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCC
Confidence            3455667777877 77888888888888888888888888888888888888888888887 888888888888888888


Q ss_pred             CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      +++.+++++|.++..+|++++|+..|++++++.|+++
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            8888888888888888888888888888888888765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.77  E-value=1e-17  Score=150.40  Aligned_cols=198  Identities=14%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHH
Q 010276          227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL  305 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  305 (514)
                      ..|++.+|.++++++.+..+..          ++. .+++++|...|.++              +.++...|++++|+..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            4567777777777777665532          122 46777777777665              4566677777777777


Q ss_pred             HHHHhhcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHH
Q 010276          306 VHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       306 ~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      +.+++...+..      ..++..+|.++.. |++++|+.+|++++.+.+..      ..++..+|.++.. |++++|+.+
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            77777654322      2345556666555 66666666666666654321      2345566666666 666666666


Q ss_pred             HHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHH
Q 010276          373 FRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKK  439 (514)
Q Consensus       373 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~  439 (514)
                      |++++.+.|..       .++..+|.++..+|++++|+.+|++++...|++      ...+..+|.++... |++++|+.
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~  216 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            66666654421       245566666666666666666666666654432      23455566666665 66666666


Q ss_pred             HHHHHHhhCCCC
Q 010276          440 FYESALRLEPGY  451 (514)
Q Consensus       440 ~~~~a~~~~~~~  451 (514)
                      .|++++ .+|+.
T Consensus       217 ~~~~al-~~p~~  227 (307)
T 2ifu_A          217 CVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHT-TSTTS
T ss_pred             HHHHHh-CCCCC
Confidence            666666 66544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.76  E-value=2.6e-17  Score=147.76  Aligned_cols=218  Identities=12%  Similarity=0.047  Sum_probs=146.9

Q ss_pred             hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHH
Q 010276          262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE  340 (514)
Q Consensus       262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~  340 (514)
                      .|++++|.++++++.+..+...         +...+++++|...|.++              +.++.. |++++|+..|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~   60 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL   60 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence            4667777777777776655320         11146777777777765              334444 77888888888


Q ss_pred             HHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          341 KSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      +++.+.+..      ..++..+|.++...|++++|+.+|++++++.+..       .++..+|.+|.. |++++|+.+|+
T Consensus        61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~  139 (307)
T 2ifu_A           61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ  139 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            877765533      3456777788888888888888888877764321       356777888777 88888888888


Q ss_pred             HHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHH
Q 010276          408 EAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       408 ~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      +++.+.|..      ..++..+|.++... |++++|+.+|++++++.|++      ..++..+|.++...|++++|+..|
T Consensus       140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          140 QAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            887766543      46677788888877 88888888888887765433      236677777777778888888888


Q ss_pred             HHHHhhCCCc------hHHHHHHHHHHHhccHHHHHH
Q 010276          476 ERYLKDWADD------SLHVKLAQVFAATNMLQEALS  506 (514)
Q Consensus       476 ~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~  506 (514)
                      ++++ ..|+.      .....++..+ ..|+.+.+..
T Consensus       219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            8887 77753      1344445544 4555544433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.76  E-value=8.7e-18  Score=143.61  Aligned_cols=194  Identities=12%  Similarity=-0.023  Sum_probs=106.3

Q ss_pred             hCChHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHhCChhHHHHHHHHHhhcCCCCh-----------------
Q 010276          262 IGKNDEAILNFEKVRSIDPYIMTYMDEY-------AMLLKVKCDYSKLSKLVHDLLSIDPSRP-----------------  317 (514)
Q Consensus       262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------  317 (514)
                      .+++..|.+.|.+++..+|+..++|..+       +.++...++..+++..+++.+.+.|...                 
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            4445555555555555555555555544       4444444444444444444444444322                 


Q ss_pred             ----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHH
Q 010276          318 ----EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGL  389 (514)
Q Consensus       318 ----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l  389 (514)
                          ++...++.++.. |++++|.+.|+.++...|.+. ..+.+|.++...+++++|+..|+.+....+.   ..+++.+
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence                222333444444 666666666666555556555 6666666666666666666666655443211   1356666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAM--PQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL  458 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  458 (514)
                      |.++..+|++++|+..|++++...  |. .+.+++.+|.++..+ |+.++|...|++++..+|+ +.++..|
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            666666666666666666665432  33 445666666666666 6666666666666666666 5554444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.75  E-value=2.4e-17  Score=161.63  Aligned_cols=155  Identities=15%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE  408 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~  408 (514)
                      |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            566677777777777777777777777777777777777777777777777776 6677777777777777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CChhHHHHHHHHHHhhCCCc
Q 010276          409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++..++.++...   |++++|...++++++..|++
T Consensus        83 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            7777777777777777777776 7777777777777777777777777777777777   77777777777777777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.75  E-value=8.3e-19  Score=159.11  Aligned_cols=182  Identities=15%  Similarity=0.105  Sum_probs=117.4

Q ss_pred             hCChhHHHHHHHH----HhhcCCCChHHHHHHHHHHh-------------hcChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          296 KCDYSKLSKLVHD----LLSIDPSRPEVFVALSVLWE-------------RKDERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       296 ~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      .+.+++|+..+..    ++.+.|..  ++...|....             .+++++|+..+++++...|..+..+..+|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            3456677766666    66666665  3333332221             145556666666666666766777777777


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      ++...|++++|+..|++++...|++                .++.++|.++...|++++|+..|++++..+|+++.+++.
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  235 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR  235 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            7777777777777777777776665                456666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLK  480 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~  480 (514)
                      +|.++... |++++|+..|+++++++|++..++..++.++...|++++| ...|++++.
T Consensus       236 lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          236 RGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666 6666666666666666666666666666666666666666 345555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.74  E-value=2e-17  Score=141.46  Aligned_cols=207  Identities=9%  Similarity=-0.037  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhCChHHHHHHHHHHHhhCCCCH------
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-------AKVDAIIGKNDEAILNFEKVRSIDPYIM------  283 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~------  283 (514)
                      ..|..|.-+ ..+++..|.+.|.+++..+|+..++|..+       +.++...++..+++..+.+.+.+.|...      
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~   87 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI   87 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence            344556665 68999999999999999999999999999       8999999999999999999999777653      


Q ss_pred             ---------------HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-
Q 010276          284 ---------------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID-  346 (514)
Q Consensus       284 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-  346 (514)
                                     ++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.. +++++|+..|+.+.... 
T Consensus        88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A           88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence                           3455688999999999999999999999999888 88999988877 99999999999876653 


Q ss_pred             ccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 010276          347 ERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK  421 (514)
Q Consensus       347 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  421 (514)
                      |.. ..+++.+|.++..+|++++|+..|+++....  |. . .+++.+|.++..+|+.++|...|++++..+|+ ..+..
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            221 3589999999999999999999999998654  55 3 68999999999999999999999999999999 87776


Q ss_pred             HHHHH
Q 010276          422 LVGDV  426 (514)
Q Consensus       422 ~l~~~  426 (514)
                      .+...
T Consensus       246 aL~~~  250 (282)
T 4f3v_A          246 ALKDP  250 (282)
T ss_dssp             HHHCT
T ss_pred             HHhCC
Confidence            66544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=1.9e-17  Score=130.05  Aligned_cols=114  Identities=14%  Similarity=-0.001  Sum_probs=102.2

Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276          338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  416 (514)
                      .+++++.++|+++.+++.+|.++...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++.++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            4566777889999999999999999999999999999999999987 788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      +.+++.+|.++... |++++|+..|++++++.|+.+
T Consensus       104 ~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999998 999999999999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.74  E-value=9.3e-17  Score=157.48  Aligned_cols=163  Identities=10%  Similarity=0.052  Sum_probs=129.0

Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276          228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH  307 (514)
Q Consensus       228 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  307 (514)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc---CChHHHHHHHHHhHhhcCCh
Q 010276          308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRPEAAVIAFRGAQELRPDL  383 (514)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~  383 (514)
                      ++++.+|+++.++..+|.++.. |++++|+..++++++.+|+++.++..+|.++...   |++++|+..++++++.+|+.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999988887 8999999999999999999888899999999988   89999999999999988886


Q ss_pred             -HHHHHHH
Q 010276          384 -RSYQGLV  390 (514)
Q Consensus       384 -~~~~~l~  390 (514)
                       ..+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence             5555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.74  E-value=6.1e-16  Score=130.40  Aligned_cols=174  Identities=14%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhc----ChhHHHHHHHHHH
Q 010276          268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSI  343 (514)
Q Consensus       268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~  343 (514)
                      |+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.++..+    ++++|+.+|+++.
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            44444444443  34455555555555555555555555555442  3455555555555543    5556666666653


Q ss_pred             HhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 010276          344 RIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQ----FSKVKEALYAAREAMKA  412 (514)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~  412 (514)
                      +  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|.   ..+++.+|.+|..    .+++++|+.+|+++.+.
T Consensus        81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            2  3455666666666655    56666666666666666663   2566666666666    56666666666666665


Q ss_pred             CCCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHhhC
Q 010276          413 MPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLE  448 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~  448 (514)
                       |.++.+++.+|.+|....|     ++++|+.+|+++.+..
T Consensus       159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence             4555666666666664312     5666777776666653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.74  E-value=1.7e-16  Score=133.83  Aligned_cols=173  Identities=14%  Similarity=0.059  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC----ChHHHHHHHHH
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK----RPEAAVIAFRG  375 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~  375 (514)
                      +|+..|+++.+.  .++.+++.+|.++.. +++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            345555555543  556666666665555 6666666666666543  345566666666655 4    56666666666


Q ss_pred             hHhhcCCh-HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----cCCChHHHHHHHHHH
Q 010276          376 AQELRPDL-RSYQGLVHSYLQ----FSKVKEALYAAREAMKAMP--QSAKALKLVGDVHAS----NASGREKAKKFYESA  444 (514)
Q Consensus       376 ~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a  444 (514)
                      +.+  +.+ .+++.+|.+|..    .+++++|+.+|+++.+..|  +++.+++.+|.+|..    . +++++|+.+|+++
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A  155 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGS  155 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHH
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHH
Confidence            633  222 555666666655    5566666666666665555  235566666666655    4 5566666666666


Q ss_pred             HhhCCCChHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhhC
Q 010276          445 LRLEPGYLGAALALAELHVIE-G-----RNGDAVSLLERYLKDW  482 (514)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~~~~~  482 (514)
                      ++. |.++.+++.||.+|... |     ++++|+.+|+++.+..
T Consensus       156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            655 44455666666665543 2     5666666666665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.73  E-value=1.6e-18  Score=157.25  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=133.4

Q ss_pred             hCChHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------HhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          262 IGKNDEAILNFEK----VRSIDPYIMTYMDEYAMLLK------------VKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       262 ~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      .+.+++|+..+..    ++.+.|..  ++...|....            ..+++++|+..+++++...|..+..+..+|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            3456777777777    67777765  3333443322            3455667777777777777777777888887


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccC---------------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERH---------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG  388 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~  388 (514)
                      ++.. |++++|+..|++++...|.+               ..++.++|.++...|++++|+..|+++++++|++ .+++.
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  235 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR  235 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            7776 88888888888888888777               4777788888888888888888888888888776 67788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 010276          389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA-KKFYESALR  446 (514)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~  446 (514)
                      +|.++...|++++|+..|+++++++|++..++..++.++... |++++| ...|++++.
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI-RRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888877 777777 445655554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=3.6e-17  Score=128.97  Aligned_cols=113  Identities=13%  Similarity=0.011  Sum_probs=65.9

Q ss_pred             HHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      .|++++..+|++ .+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++... |++++|+..|++++.++|+
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence            344555555554 45555555555555555555555555555565556666666665555 5666666666666666666


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ++.+++.+|.++...|++++|+..|+++++..|++
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            55666666666666666666666666666555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.71  E-value=2.7e-15  Score=129.96  Aligned_cols=248  Identities=15%  Similarity=0.091  Sum_probs=195.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276          221 EAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY  299 (514)
Q Consensus       221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (514)
                      -.+-.+-.|+|..++.-..   +..|.+ ....+.+.+++..+|++...       .. ++....+...++..+.  ++ 
T Consensus        19 ~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~-   84 (310)
T 3mv2_B           19 NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK-   84 (310)
T ss_dssp             HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT-
T ss_pred             HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc-
Confidence            3677788899999998443   334433 45666778889999998742       11 2222334444554442  22 


Q ss_pred             hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--cCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276          300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVIAFRGA  376 (514)
Q Consensus       300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  376 (514)
                        |+..+++.+...+.++..+..+|.++.. |++++|++++.+.+..+|  .+.+++...+.++..+|+.+.|.+.++++
T Consensus        85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              7889999988776777777888988887 999999999999999887  78889999999999999999999999999


Q ss_pred             HhhcCC-----hHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          377 QELRPD-----LRSYQGLVHS--YLQFS--KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       377 ~~~~~~-----~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      .+.+|+     +.....++..  ....|  ++.+|..+|+++....|+  .+..+++   ++..+ |++++|...++.++
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~-g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ-RNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH-TCHHHHHHHHHHHH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc-CCHHHHHHHHHHHH
Confidence            999993     5555565544  55556  999999999999998887  3334444   78888 99999999999888


Q ss_pred             hh----------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHH
Q 010276          446 RL----------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVK  490 (514)
Q Consensus       446 ~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  490 (514)
                      +.          +|+++.++.+++.+....|+  +|.++++++.+..|+++....
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            76          58899999999999999997  899999999999999875433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=7.5e-17  Score=127.14  Aligned_cols=121  Identities=10%  Similarity=-0.117  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276          335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM  413 (514)
Q Consensus       335 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  413 (514)
                      +...+++++..+|+++..++.+|.++...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++..+
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456889999999999999999999999999999999999999999998 889999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      |+++.+++.+|.++... |++++|+..|+++++++|+++....
T Consensus        86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcchH
Confidence            99999999999999999 9999999999999999998876543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=1.7e-16  Score=140.16  Aligned_cols=196  Identities=8%  Similarity=-0.029  Sum_probs=125.5

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      |.++..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276          326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL  403 (514)
Q Consensus       326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  403 (514)
                      ++.. |++++|+..|+++++.+|+++..+.........   ..++...........|.. .....++..+  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            6666 777777777777777777654433322222221   111222222222233333 4444444433  57777777


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      +.++++++.+|++......++.++....+.+++|...|.++.+
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777777777777666666666665543556777777777655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.70  E-value=1.1e-16  Score=141.39  Aligned_cols=196  Identities=12%  Similarity=0.105  Sum_probs=125.1

Q ss_pred             CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276          280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN  358 (514)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      |.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777666 77777777777777777777777777777


Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      ++...|++++|+..|+++++.+|++. .+...+....   ...++...........|.++.+...++.++  . |++++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~-~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--A-AERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H-HHHHHH
Confidence            77777777777777777777766541 1111111111   112222222233345556666666665554  3 667777


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHc-CChhHHHHHHHHHHhh
Q 010276          438 KKFYESALRLEPGYLGAALALAELHVIE-GRNGDAVSLLERYLKD  481 (514)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~  481 (514)
                      ++.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            7777777777776666666666665555 5566677666666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=1.4e-15  Score=118.28  Aligned_cols=133  Identities=21%  Similarity=0.278  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                      .+++.+|.++...|++++|+..++++++..|++ ..+..+|.++...|++++|...+++++...|.++..+..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            356677777777778888888887777777766 6677777777777888888888888777777777777777877777


Q ss_pred             cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                      . |++++|+..++++++..|.++.++..+|.++...|++++|...+++++...|+
T Consensus        82 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 Q-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             h-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            7 78888888888887777777777777888888888888888888877777765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=3.5e-16  Score=122.75  Aligned_cols=115  Identities=17%  Similarity=-0.016  Sum_probs=86.4

Q ss_pred             HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      ..|++++..+|++ ..++.+|..+...|++++|+..|++++..+|+++.+|..+|.++... |++++|+..|++++.++|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCC
Confidence            3556666667766 66777777777777777777777777777787778888888887777 788888888888888888


Q ss_pred             CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      +++.+++.+|.++...|++++|+..|+++++..|++.
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            8777888888888888888888888888877777653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.68  E-value=2.5e-15  Score=127.26  Aligned_cols=132  Identities=18%  Similarity=0.033  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN  430 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  430 (514)
                      ..++.+|..+...|++++|+..|++++  .|+..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            346778888899999999999998885  555578889999999999999999999999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          431 ASGREKAKKFYESALRLEPGYL----------------GAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       431 ~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                       |++++|+..|+++++..|++.                .+++.+|.++...|++++|+..++++++..|++
T Consensus        85 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           85 -EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             -TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             -ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence             999999999999999887766                888999999999999999999999999998876

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.68  E-value=2e-16  Score=124.18  Aligned_cols=125  Identities=13%  Similarity=-0.018  Sum_probs=107.9

Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                      ..+++++..+|++...++.+|..+...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45677888889989999999999999999999999999999999987 78999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      ++.+++.+|.++... |++++|+..|+++++++|+++........+.
T Consensus        85 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           85 EPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             CTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            999999999999998 9999999999999999988876655444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.68  E-value=6.7e-13  Score=126.14  Aligned_cols=366  Identities=10%  Similarity=0.014  Sum_probs=223.1

Q ss_pred             hhh-hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc
Q 010276           55 RDR-EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG  133 (514)
Q Consensus        55 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (514)
                      +.| ++..|...|++++...|                                              .|+++.+..+|++
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P----------------------------------------------~~~~e~~~~ifer   39 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYM----------------------------------------------SKDYRSLESLFGR   39 (493)
T ss_dssp             ------CCHHHHHHHHHHHHH----------------------------------------------TTCHHHHHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHCC----------------------------------------------CCCHHHHHHHHHH
Confidence            456 48888888988888876                                              1778899999998


Q ss_pred             CCCCCccHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhc---CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc
Q 010276          134 IPSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH  209 (514)
Q Consensus       134 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (514)
                      ......+.+.|..........+. .+.....|+.++..   +|.+...|............                   
T Consensus        40 al~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~-------------------  100 (493)
T 2uy1_A           40 CLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED-------------------  100 (493)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS-------------------
T ss_pred             HhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh-------------------
Confidence            54442378888877777776663 46677888888864   78888999887666432110                   


Q ss_pred             CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH-------------HHhCChHHHHHHHHHH
Q 010276          210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVD-------------AIIGKNDEAILNFEKV  275 (514)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~-------------~~~~~~~~A~~~~~~~  275 (514)
                                       ..|+.+.+..+|++++...+.+.+ .|......-             ...+.+..|...++.+
T Consensus       101 -----------------~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~  163 (493)
T 2uy1_A          101 -----------------EQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI  163 (493)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence                             123445555555555553222211 111111100             0112233344444444


Q ss_pred             HhhCCC-CHHHHHHHHHHHHHh--CC-----hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276          276 RSIDPY-IMTYMDEYAMLLKVK--CD-----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID  346 (514)
Q Consensus       276 ~~~~~~-~~~~~~~l~~~~~~~--~~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~  346 (514)
                      ....+. +...|..+...-...  |-     .+....+|++++...|..+..|...+..... |+.++|...|++++.. 
T Consensus       164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-  242 (493)
T 2uy1_A          164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-  242 (493)
T ss_dssp             HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence            433222 333454444332211  00     2345667888888778888888877776666 7778888888888887 


Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--------CC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--------PD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                      |.+...+...+... ..+   +....+.......        +.  . ..|...+....+.+..+.|...|+++ ...+.
T Consensus       243 P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~  317 (493)
T 2uy1_A          243 SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV  317 (493)
T ss_dssp             CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred             CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence            77766665444331 111   1111111111000        11  1 45777777777788888888888888 43333


Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHH
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV  494 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~  494 (514)
                      ...+|...+.+.....++.+.|...|+.+++..|+.+..+...+......|+.+.|..+|+++    +.. .+|......
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f  393 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY  393 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            556666666666655246888999999988888888888888888888888888888888887    233 467777777


Q ss_pred             HHHhccHHHHHHHHHHHh
Q 010276          495 FAATNMLQEALSHYEAAL  512 (514)
Q Consensus       495 ~~~~g~~~~A~~~~~~al  512 (514)
                      -...|+.+.+.+.+++++
T Consensus       394 E~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          394 EFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHHHSCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            777788888888888775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.68  E-value=1.5e-14  Score=125.33  Aligned_cols=245  Identities=12%  Similarity=0.021  Sum_probs=147.5

Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHH
Q 010276          116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF  195 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~  195 (514)
                      +-.+-.|+|..++....++.... .....+.+.++|..+|++....       ...| ...+...+              
T Consensus        21 kn~fy~G~yq~~i~e~~~~~~~~-~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~l--------------   77 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKFSKVT-DNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLY--------------   77 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTSSCCC-CHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHH--------------
T ss_pred             HHHHHhhHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHH--------------
Confidence            44456899999999777764432 2346667778888888877421       1111 11122111              


Q ss_pred             hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276          196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV  275 (514)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  275 (514)
                                                +..+  .++   |+..+++.+...+.+...+..+|.++...|++++|++++.+.
T Consensus        78 --------------------------a~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~  126 (310)
T 3mv2_B           78 --------------------------VQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEG  126 (310)
T ss_dssp             --------------------------HHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --------------------------HHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                      1111  122   677777777665555666678888888888888888888888


Q ss_pred             HhhCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC----ChHHHHHHHHH--Hhh---cChhHHHHHHHHHHH
Q 010276          276 RSIDP--YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----RPEVFVALSVL--WER---KDERGALSYAEKSIR  344 (514)
Q Consensus       276 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~--~~~---~~~~~A~~~~~~~~~  344 (514)
                      +..+|  .+.+++...+.++...|+.+.|.+.++++.+.+|+    +..+...++..  ...   +++.+|..+|+++..
T Consensus       127 i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~  206 (310)
T 3mv2_B          127 IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ  206 (310)
T ss_dssp             HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred             hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            88776  67788888888888888888888888888777763    22223333322  222   256666666666655


Q ss_pred             hccc--CchhHHHHHHHHHhcCChHHHHHHHHHhHhh----------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          345 IDER--HIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL----------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       345 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      ..|+  .+..+++   ++..+|++++|...++.+++.          +|++ .++.+++.+....|+  +|.++++++.+
T Consensus       207 ~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          207 TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            5554  1222222   556666666666666655544          2444 344455545555554  55555555555


Q ss_pred             hCCCCHHH
Q 010276          412 AMPQSAKA  419 (514)
Q Consensus       412 ~~p~~~~~  419 (514)
                      ..|+++.+
T Consensus       282 ~~P~hp~i  289 (310)
T 3mv2_B          282 LDHEHAFI  289 (310)
T ss_dssp             TTCCCHHH
T ss_pred             hCCCChHH
Confidence            55555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.67  E-value=4.1e-15  Score=132.54  Aligned_cols=166  Identities=8%  Similarity=0.002  Sum_probs=119.1

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---  416 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---  416 (514)
                      |.....+...+..+...|++++|+..++++++..|..       ..+..+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            3334455566777778888888888888777766543       124567777777788888888888887654433   


Q ss_pred             ---HHHHHHHHHHHHhcCCChHHHHHHHHHHH---hhCCCCh----HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC--
Q 010276          417 ---AKALKLVGDVHASNASGREKAKKFYESAL---RLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWAD--  484 (514)
Q Consensus       417 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--  484 (514)
                         ..++..+|.+|... |++++|+.+|++++   +..|++.    .+++++|.++..+|++++|+.+++++++..++  
T Consensus       152 ~~~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          152 YQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             THHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence               45777888888887 88888888888887   3445432    47777888888888888888888888776543  


Q ss_pred             -----chHHHHHHHHHHHhccHHHH-HHHHHHHhc
Q 010276          485 -----DSLHVKLAQVFAATNMLQEA-LSHYEAALR  513 (514)
Q Consensus       485 -----~~~~~~l~~~~~~~g~~~~A-~~~~~~al~  513 (514)
                           ..+++.+|.+|..+|++++| ..+|++|+.
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                 24777888888888888888 677777764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.67  E-value=7.6e-15  Score=114.11  Aligned_cols=130  Identities=22%  Similarity=0.305  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c
Q 010276          252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K  330 (514)
Q Consensus       252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  330 (514)
                      ++.+|.++...|++++|+..++++++.+|.+...+..++.++...|++++|...+++++...|.++..+..++.++.. |
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            344444444444444444444444444444444444444444444444444444444444444444444444444333 4


Q ss_pred             ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276          331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP  381 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  381 (514)
                      ++++|+..+++++...|.++..+..+|.++...|++++|...+++++..+|
T Consensus        84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            444444444444444444444444444444444444444444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.9e-16  Score=152.81  Aligned_cols=166  Identities=8%  Similarity=0.008  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCC----------hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC--CHH
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKR----------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS--KVK  400 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~  400 (514)
                      +|+..+++++..+|++..+|+.++.++...|+          +++++..++++++.+|++ .+|...+.++...+  +++
T Consensus        47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~  126 (567)
T 1dce_A           47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA  126 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence            45555555555555555555555555555555          555555555555555555 55555555555555  445


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--------------
Q 010276          401 EALYAAREAMKAMPQSAKALKLVGDVHASNAS-GREKAKKFYESALRLEPGYLGAALALAELHVIE--------------  465 (514)
Q Consensus       401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------------  465 (514)
                      ++++.+.++++.+|.+..+|...+.+.... | .++++++++.++++.+|.+..+|...+.++...              
T Consensus       127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          127 RELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            555555555555555555555555555555 4 555555555555555555555555555555553              


Q ss_pred             CChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          466 GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      +.+++|++++.+++..+|++. +|+.++.++...|+
T Consensus       206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            334566666666666666553 55555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.66  E-value=3.8e-16  Score=130.50  Aligned_cols=142  Identities=15%  Similarity=0.041  Sum_probs=69.8

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----------------HHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----------------RSYQGLVHS  392 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~  392 (514)
                      ++++++.+.++......+.....+..+|..+...|++++|+..|++++...|.+                 .++..+|.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~   97 (198)
T 2fbn_A           18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC   97 (198)
T ss_dssp             ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            444555544444444444445555555666666666666666666665554443                 234444555


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276          393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV  472 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (514)
                      +...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...++..++.
T Consensus        98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A           98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555544 55555555555555555555555555555544444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=7e-16  Score=148.79  Aligned_cols=184  Identities=10%  Similarity=0.049  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--Ch
Q 010276          266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD----------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DE  332 (514)
Q Consensus       266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~  332 (514)
                      ++|++.+.+++..+|++..+|...+.++...|+          +++++..+++++..+|++..+|...+.++.. +  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            455666666666666666666666666666665          6666666666666666666666666666665 5  45


Q ss_pred             hHHHHHHHHHHHhcccCchhHHHHHHHHHhcC-ChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------------
Q 010276          333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMK-RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------------  396 (514)
Q Consensus       333 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------------  396 (514)
                      ++++..++++++.+|.+..+|..++.+....| .++++++++.++++.+|++ .+|..++.++...              
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            77777777777777777777777777777777 6777777777777777776 6677777776653              


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHH------------HHHHHHHHHhhCCC
Q 010276          397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK------------AKKFYESALRLEPG  450 (514)
Q Consensus       397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~------------A~~~~~~a~~~~~~  450 (514)
                      +.++++++++.+++..+|++..+|+.++.++... +++++            |+..|.+++.++|.
T Consensus       206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC-CCccceeeeeeccCCceEEEEeccceecccc
Confidence            5679999999999999999999999999999987 77655            55667777777765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=4e-15  Score=114.13  Aligned_cols=112  Identities=14%  Similarity=0.081  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ..+..+|..+...|++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.+++.+|.++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666665 66666666666666666666666666666666


Q ss_pred             HcCChhHHHHHHHHHHhhC------CCch-HHHHHHHHHH
Q 010276          464 IEGRNGDAVSLLERYLKDW------ADDS-LHVKLAQVFA  496 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~------~~~~-~~~~l~~~~~  496 (514)
                      ..|++++|+..|+++++..      |++. ++..++.+..
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            6666666666666666666      5543 5555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.65  E-value=1.1e-14  Score=117.71  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++...
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            444455555555555555555555555555555555555555554 5555555555555555555555555555555555


Q ss_pred             CChhHHHHHHHHHHhhCCCch-HH--HHHHHHHHHhccHHHHHHHHHHH
Q 010276          466 GRNGDAVSLLERYLKDWADDS-LH--VKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      |++++|+..++++++..|++. ++  ..++..+...|++++|+..++++
T Consensus        95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            555555555555555555442 33  22222344445555555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=7.9e-15  Score=112.43  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=110.2

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      |..+..+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3456788999999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHhhC------CCChHHHHHHHHHHHH
Q 010276          426 VHASNASGREKAKKFYESALRLE------PGYLGAALALAELHVI  464 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~  464 (514)
                      ++... |++++|+..|+++++++      |+++.++..++.+..+
T Consensus        81 ~~~~~-~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAV-KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHH-hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999 99999999999999999      9999999888887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=3.4e-15  Score=122.24  Aligned_cols=126  Identities=19%  Similarity=0.239  Sum_probs=98.5

Q ss_pred             HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCCCh--H
Q 010276          360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV-HASNASGR--E  435 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~--~  435 (514)
                      +...|++++|+..+++++..+|++ .++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +... |++  +
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~-~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA-SQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-CCcchH
Confidence            455677888888888888888876 7788888888888888888888888888888888888888888 6666 777  8


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276          436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  486 (514)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            888888888888888888888888888888888888888888888887763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.63  E-value=4.4e-15  Score=113.58  Aligned_cols=108  Identities=15%  Similarity=0.085  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-------HHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-------GAAL  456 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~  456 (514)
                      .++..+|..++..|++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++++|++.       .++.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34677888888888888888888888888888888888888888887 888888888888888776553       3677


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA  492 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  492 (514)
                      .+|.++..+|++++|++.|++++...|+++....+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~  123 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK  123 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence            788888888888888888888888888766544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=1e-15  Score=127.84  Aligned_cols=154  Identities=10%  Similarity=0.003  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------------  417 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------  417 (514)
                      ......+......|+++++.+.+.......+.. ..+..+|..+...|++++|+..|++++...|+++            
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   84 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK   84 (198)
T ss_dssp             -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            334445666677788888888887666555554 6788899999999999999999999999888876            


Q ss_pred             ----HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHH
Q 010276          418 ----KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLA  492 (514)
Q Consensus       418 ----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~  492 (514)
                          .++..+|.++... |++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++..|++. ++..++
T Consensus        85 ~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           85 NIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence                8889999999998 9999999999999999999999999999999999999999999999999999875 888899


Q ss_pred             HHHHHhccHHHHH
Q 010276          493 QVFAATNMLQEAL  505 (514)
Q Consensus       493 ~~~~~~g~~~~A~  505 (514)
                      .++...|+..++.
T Consensus       164 ~~~~~~~~~~~~~  176 (198)
T 2fbn_A          164 LCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988888777

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=2e-14  Score=116.29  Aligned_cols=132  Identities=18%  Similarity=0.072  Sum_probs=119.2

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      +..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5678889999999999999999999999999987 789999999999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          429 SNASGREKAKKFYESALRLEPGYLGAALA--LAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      .. |++++|+..|+++++.+|+++.++..  ++..+...|++++|+..+.+.....
T Consensus        93 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           93 AL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            98 99999999999999999999888854  4444888899999999999876653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=99.62  E-value=9.1e-15  Score=111.00  Aligned_cols=146  Identities=36%  Similarity=0.528  Sum_probs=113.6

Q ss_pred             CCchHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCC-ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchh
Q 010276            1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ   79 (514)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~   79 (514)
                      |-.++++++.+++.|+|++|+.++++++++...++.. ++...+++++.+|++++.+|+|.+|...|+++++....-++.
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3468999999999999999999999999998877765 899999999999999999999999999999999875433322


Q ss_pred             hhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 010276           80 NSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR  152 (514)
Q Consensus        80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  152 (514)
                      .....  .+  +.....++.+.  .+.+.+++|+++.|+.++|++++|+..++.|+....++.+...+|++|.
T Consensus       100 ~s~~~--~~--~~~ss~p~s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          100 SKVRP--ST--GNSASTPQSQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred             CCccc--cc--cccCCCccccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence            21110  00  00011111111  2357899999999999999999999999999999999999999999874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=6.4e-15  Score=120.58  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=109.0

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH-HHhcCCH--HHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS-YLQFSKV--KEALYA  405 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~--~~A~~~  405 (514)
                      |++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.+ +...|++  ++|+..
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~  103 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM  103 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            778888889999999999888899999999999999999999999999998887 778888988 7788988  999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      +++++..+|+++.++..+|.++... |++++|+..|+++++.+|+++....
T Consensus       104 ~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A          104 IDKALALDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCccHHH
Confidence            9999999999999999999999998 9999999999999999988765443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=1.5e-14  Score=111.71  Aligned_cols=121  Identities=21%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  425 (514)
                      |.++..+..+|..+...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            3334445555555555555555555555555555544 445555555555555555555555555555555555555555


Q ss_pred             HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276          426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN  468 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  468 (514)
                      ++... |++++|+..|+++++.+|+++.++..++.++...|++
T Consensus        89 ~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            55554 5555555555555555555555555555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-14  Score=112.17  Aligned_cols=115  Identities=16%  Similarity=0.046  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      .++..+|.++...|++++|+..+++++..+|++..++..+|.++... |++++|+..++++++.+|+++.++..+|.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44555555566666666666666666655565566666666666555 66666666666666666665566666666666


Q ss_pred             HcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhc
Q 010276          464 IEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN  499 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g  499 (514)
                      ..|++++|+..++++++..|++ .++..++.++...|
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            6666666666666666655554 25555555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.60  E-value=3e-14  Score=110.36  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG  424 (514)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  424 (514)
                      .|..+..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45567789999999999999999999999999999987 88999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          425 DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      .++... |++++|+..|+++++.+|++..++..++.++...|+
T Consensus        92 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAM-KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999998 999999999999999999999999999999988774

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.60  E-value=7.7e-14  Score=118.01  Aligned_cols=132  Identities=16%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK  294 (514)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (514)
                      ...++.+|..+...|++++|+..|++++  .| ++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3445677899999999999999999885  33 67899999999999999999999999999999999999999999999


Q ss_pred             HhCChhHHHHHHHHHhhcCCCCh----------------HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276          295 VKCDYSKLSKLVHDLLSIDPSRP----------------EVFVALSVLWER-KDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       295 ~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~  349 (514)
                      ..|++++|+..+++++...|.+.                .++..+|.++.. |++++|+..++++++..|++
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999998888766                666666666555 66666666666666666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.60  E-value=9.5e-14  Score=123.69  Aligned_cols=165  Identities=12%  Similarity=-0.010  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHH
Q 010276          249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA  322 (514)
Q Consensus       249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  322 (514)
                      ...+...+..+...|++++|++.+.++++..|....      .+..+|.++...|                         
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  129 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-------------------------  129 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-------------------------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-------------------------
Confidence            344445556666666666666666666665554321      2233344444444                         


Q ss_pred             HHHHHhhcChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhH---hhcCCh-----HHHHH
Q 010276          323 LSVLWERKDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQ---ELRPDL-----RSYQG  388 (514)
Q Consensus       323 l~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~-----~~~~~  388 (514)
                              ++++|+..+++++...+..      ..++..+|.+|...|++++|+.+|++++   +..|+.     .++.+
T Consensus       130 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             --------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence                    4555555555554433221      2355666777777777777777777766   333432     35667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCChHHH-HHHHHHHHhh
Q 010276          389 LVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKA-KKFYESALRL  447 (514)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~~  447 (514)
                      +|.+|..+|++++|+.++++++...++      ...+++.+|.++... |++++| ..+|++++.+
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHH
Confidence            777777777777777777777665432      156677777777776 777777 6667777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=1.8e-15  Score=143.19  Aligned_cols=149  Identities=16%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY  393 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~  393 (514)
                      +++++|+..++.++...|.....+..+|..++..|++++|+..|+++++..|.+                .+|.++|.++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777788888888888888888888888888888888888775                5788999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS  473 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (514)
                      ..+|++++|+..|++++.++|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++|..
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 999999999999999999999999999999999999888764


Q ss_pred             -HHHHHH
Q 010276          474 -LLERYL  479 (514)
Q Consensus       474 -~~~~~~  479 (514)
                       .+.+++
T Consensus       407 ~~~~~~f  413 (457)
T 1kt0_A          407 RIYANMF  413 (457)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence             344433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=1.9e-14  Score=116.01  Aligned_cols=110  Identities=18%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH  427 (514)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  427 (514)
                      ++..+..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455566666666666666666666666666655 55666666666666666666666666666666666666666666


Q ss_pred             HhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          428 ASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      ... |++++|+..|+++++++|+++.++...+
T Consensus        90 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           90 FDM-ADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHc-cCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            665 6666666666666666666655444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=3.2e-15  Score=141.47  Aligned_cols=145  Identities=12%  Similarity=0.036  Sum_probs=132.9

Q ss_pred             hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 010276          362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGD  425 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~  425 (514)
                      ..+++++|+..|+.++...|+. ..+..+|..+...|++++|+..|++++...|.+               ..++.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            5567888888888888888887 789999999999999999999999999999998               699999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHH
Q 010276          426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEA  504 (514)
Q Consensus       426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A  504 (514)
                      ++... |++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|++. ++..++.++...|++++|
T Consensus       326 ~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          326 CYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999999999999999999999999999999885 999999999999999988


Q ss_pred             HHH
Q 010276          505 LSH  507 (514)
Q Consensus       505 ~~~  507 (514)
                      ...
T Consensus       405 ~~~  407 (457)
T 1kt0_A          405 DRR  407 (457)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=3.5e-14  Score=109.58  Aligned_cols=117  Identities=13%  Similarity=0.041  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ..+..+|..+...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccH
Q 010276          464 IEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNML  501 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~  501 (514)
                      ..|++++|+..++++++..|++. ++..++.++...|++
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999875 999999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.59  E-value=2.6e-14  Score=127.37  Aligned_cols=157  Identities=10%  Similarity=0.001  Sum_probs=100.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHhhcCCh-H------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 010276          356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-R------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL  422 (514)
Q Consensus       356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~  422 (514)
                      .+..+...|++++|...+++++...+.. .      .+..+|.++...|++++|+..+++++...+..      ..++..
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3455666677777777777666655443 1      12246666666667777777777777643322      235677


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhh---C----CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRL---E----PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLH  488 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~  488 (514)
                      +|.+|... |++++|+.+|+++++.   .    +....+++++|.++..+|++++|+.+++++++..+..       .++
T Consensus       161 lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          161 IANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            77777776 7777777777777742   1    1123366777777777777777777777777765321       467


Q ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHhc
Q 010276          489 VKLAQVFAATN-MLQEALSHYEAALR  513 (514)
Q Consensus       489 ~~l~~~~~~~g-~~~~A~~~~~~al~  513 (514)
                      +.+|.+|..+| ++++|+++|++|+.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            77777777777 35777777777764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.59  E-value=5.8e-14  Score=113.18  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=102.2

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      .+.....++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44555666778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      .++...|++++|+..|++++..+|+++..+...+...
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999888776666543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.58  E-value=2.9e-11  Score=114.94  Aligned_cols=364  Identities=7%  Similarity=-0.039  Sum_probs=238.7

Q ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC-
Q 010276           45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE-  123 (514)
Q Consensus        45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-  123 (514)
                      ..+..+-..+-.|+++.+...|++++...| +.+.+........                               ..+. 
T Consensus        16 ~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~-------------------------------~~~~~   63 (493)
T 2uy1_A           16 AIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVR-------------------------------KVSQK   63 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHH-------------------------------HHC--
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHH-------------------------------HhCch
Confidence            334444444444899999999999999877 4444443322222                               1111 


Q ss_pred             HHHHHHHHhc----CCCCCccHHHHHHHHHHHH----hcCChhhHHHHHHHHHhcCCCCHHH-HHHHHHhccCcccHhHH
Q 010276          124 TKAAIVEMEG----IPSKARNLQMSLLMAKLYR----NSRHNRGAVACYKECLRHCPFFIEA-ITALAELGATPKDIISL  194 (514)
Q Consensus       124 ~~~A~~~~~~----~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~  194 (514)
                      .+.....++.    +...+.+...|......+.    .+|+.+.+..+|++++..-+.+..- |..........+     
T Consensus        64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-----  138 (493)
T 2uy1_A           64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN-----  138 (493)
T ss_dssp             --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-----
Confidence            1111222222    3334667788888877755    3567889999999999953333322 221111100000     


Q ss_pred             HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCC---------
Q 010276          195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGK---------  264 (514)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~---------  264 (514)
                                       ...     .........+.+..|...++.+....+. +...|......  ..++         
T Consensus       139 -----------------~~~-----~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~  194 (493)
T 2uy1_A          139 -----------------KIT-----GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPH  194 (493)
T ss_dssp             -----------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHH
T ss_pred             -----------------ccc-----HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhh
Confidence                             000     0011111224555666666666554332 44455444333  2232         


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 010276          265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR  344 (514)
Q Consensus       265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~  344 (514)
                      .+.....|++++...|..+..|..++..+...|+.++|..++++++.. |.+...+...+.....+   +....+.....
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~~~~l~~~~~  270 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AVYGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999 99887777655442111   11111111110


Q ss_pred             ----------hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 010276          345 ----------IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFS-KVKEALYAAREAMK  411 (514)
Q Consensus       345 ----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~  411 (514)
                                ..+....+|...+....+.+..+.|...|+++ . .|..  ..|...+.+-...+ +.+.|..+|+.+++
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence                      11222356788888888888999999999999 4 3432  56666676666656 69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      ..|+++..+...+...... |+.+.|...|+++    +.....|..........|+.+.+...++++++
T Consensus       349 ~~~~~~~~~~~yid~e~~~-~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          349 KHPDSTLLKEEFFLFLLRI-GDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999888888888887 9999999999997    45678888888888999999999999999886

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=2.3e-14  Score=108.41  Aligned_cols=100  Identities=22%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      .++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++... |++++|+..|+++++++|+++.++..+|.++..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3566677777777777777777777777777777777777777776 777777777777777777777777777777777


Q ss_pred             cCChhHHHHHHHHHHhhCCCc
Q 010276          465 EGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .|++++|+..++++++..|++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            777777777777777776653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=3.3e-14  Score=108.64  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 010276          349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKAL  420 (514)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~  420 (514)
                      ...++..+|..++..|++++|+..|+++++++|++ .+|.++|.+|..+|++++|+..++++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            34567778888888888888888888888888887 778888888888888888888888888877765       3577


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      ..+|.++... |++++|+..|++++...|+ ++....+.
T Consensus        87 ~~lg~~~~~~-~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           87 SRAGNAFQKQ-NDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            8888888888 8999999999998888775 45444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.57  E-value=2.3e-14  Score=110.51  Aligned_cols=66  Identities=12%  Similarity=-0.006  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhh-------CCCChHHH----HHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRL-------EPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +|.++|.++..+ |++++|+..|++++++       +|+++.+|    +++|.++..+|++++|+..|++++++.|++
T Consensus        59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            677777777776 7777777777777777       77777777    777777777777777777777777777665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.57  E-value=8.1e-15  Score=113.02  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=94.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-------h------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-------L------RSYQGLVHSYLQFSKVKEALYAAREAMKA----  412 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  412 (514)
                      ...+...|..++..|++++|+..|+++++++|+       +      .+|.++|.++..+|++++|+..+++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            445677788888888888888888888888887       3      27999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          413 ---MPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       413 ---~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                         +|+++.+|    +++|.++..+ |++++|+..|+++++++|++..+...+..+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence               99999999    9999999998 999999999999999999886554444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=1.8e-13  Score=104.60  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      .+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++..|.++.++..+|.++..
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555554 555555555555555555555555555555555


Q ss_pred             cCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHh
Q 010276          465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAAT  498 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~  498 (514)
                      .|++++|+..++++++..|++. ++..++.++...
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            5555555555555555555442 445555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.56  E-value=2.6e-13  Score=120.81  Aligned_cols=156  Identities=13%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHH------HHHHHHHHhh-cChhHHHHHHHHHHHhcccCch------hHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEV------FVALSVLWER-KDERGALSYAEKSIRIDERHIP------GYIMK  356 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~------~~~~~  356 (514)
                      +..+...|++++|...+++++...+..+..      +..+|.++.. +++++|+.++++++...+....      ++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            445555666666666666666555544432      1123333333 4555555555555554332221      35555


Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhc---CCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELR---PDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL  422 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~  422 (514)
                      |.+|...|++++|+.+|+++++..   |.+     .++.++|.+|..+|++++|+.+++++++..+..      +.+++.
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            666666666666666666555321   111     234555555555555555555555555443222      444555


Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHh
Q 010276          423 VGDVHASNASG-REKAKKFYESALR  446 (514)
Q Consensus       423 l~~~~~~~~~~-~~~A~~~~~~a~~  446 (514)
                      +|.++... |+ +++|+.+|++++.
T Consensus       242 lg~~~~~~-g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKL-EYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCcHHHHHHHHHHHHH
Confidence            55555554 42 3555555555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=1e-13  Score=107.97  Aligned_cols=116  Identities=15%  Similarity=-0.000  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ..+..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..++++++.+|+++.+++.+|.++.
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            56777777777778888888888888877887788888888888877 88888888888888888887788888888888


Q ss_pred             HcCChhHHHHHHHHHHhhCCC-----c-hHHHHHHHHHHHhcc
Q 010276          464 IEGRNGDAVSLLERYLKDWAD-----D-SLHVKLAQVFAATNM  500 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~  500 (514)
                      ..|++++|+..|+++++..|+     + .+...+..+..+.+.
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888877765     2 355555555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.56  E-value=2.9e-13  Score=103.36  Aligned_cols=120  Identities=22%  Similarity=0.318  Sum_probs=111.3

Q ss_pred             cccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          346 DERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       346 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                      +|.. +..+..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4554 6788999999999999999999999999999987 7899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      |.++... |++++|+..++++++.+|+++.++..++.++...|
T Consensus        84 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999998 99999999999999999999999999999987765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.56  E-value=6.4e-14  Score=117.50  Aligned_cols=168  Identities=16%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC------Ch-HHHHHHHHHHHhcCCHHH
Q 010276          329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP------DL-RSYQGLVHSYLQFSKVKE  401 (514)
Q Consensus       329 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~-~~~~~l~~~~~~~~~~~~  401 (514)
                      .|++++|...++......+..+.++..+|.++...|++++|+..+++++....      .. .++..+|.++...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            37777777755444332234566777888888888888888888888777422      11 457777888888888888


Q ss_pred             HHHHHHHHHhh---CCCC----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC--CC----hHHHHHHHHHHHHcCCh
Q 010276          402 ALYAAREAMKA---MPQS----AKALKLVGDVHASNASGREKAKKFYESALRLEP--GY----LGAALALAELHVIEGRN  468 (514)
Q Consensus       402 A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~~~la~~~~~~g~~  468 (514)
                      |+..+++++..   .+++    ..++..+|.++... |++++|+..+++++...+  .+    ..++..+|.++...|++
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            88888887776   3322    45577778888877 888888888888776532  11    22456778888888888


Q ss_pred             hHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 010276          469 GDAVSLLERYLKDWADDSLHVKLAQVFAA  497 (514)
Q Consensus       469 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  497 (514)
                      ++|...+++++++..........+.+...
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~  192 (203)
T 3gw4_A          164 LEAQQHWLRARDIFAELEDSEAVNELMTR  192 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            88888888887776666433444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.55  E-value=6.5e-14  Score=109.15  Aligned_cols=120  Identities=19%  Similarity=0.157  Sum_probs=102.6

Q ss_pred             hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV  423 (514)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  423 (514)
                      .+|.++..+..+|.++...|++++|+..|++++..+|++ .++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            456678888999999999999999999999999999987 7889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHc
Q 010276          424 GDVHASNASGREKAKKFYESALRLEPG-----YLGAALALAELHVIE  465 (514)
Q Consensus       424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~  465 (514)
                      |.++... |++++|+..|+++++.+|+     +..+...+..+..+.
T Consensus        84 ~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           84 GQCQLEM-ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998 9999999999999998887     566666666665443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=7.8e-14  Score=105.50  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      .+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            46679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPE  318 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~  318 (514)
                      ++++|+..++++++.+|+++.
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=7.3e-14  Score=112.30  Aligned_cols=113  Identities=21%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhh------------------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      +..+...|..++..|++++|+..|++++..                  +|.. .++.++|.++...|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445677788888888888888888888776                  3333 345555555555555555555555555


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-HHHHHHHHHHH
Q 010276          411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-GAALALAELHV  463 (514)
Q Consensus       411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~  463 (514)
                      .++|+++.+++.+|.++... |++++|+..|+++++++|+++ .+...++.+..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            55555555555555555555 555555555555555555554 33444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.53  E-value=1.3e-13  Score=110.81  Aligned_cols=118  Identities=13%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKA------------------MPQSAKALKLVGDVHASNASGREKAKKFYESAL  445 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  445 (514)
                      ..+...|..++..|++++|+..|++++..                  +|.+..++.++|.++... |++++|+..+++++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~~al   90 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence            46889999999999999999999999998                  677789999999999999 99999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHHhccHH
Q 010276          446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAATNMLQ  502 (514)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~  502 (514)
                      +++|+++.+++.+|.++..+|++++|+..|++++++.|++.  +...++.+....++..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999975  5667777777665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=5.3e-13  Score=100.70  Aligned_cols=109  Identities=19%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      .+..+|..+...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4555566666666666666666666666666666666666666665 666666666666666666666666666666666


Q ss_pred             cCChhHHHHHHHHHHhhCCCch-HHHHHHHH
Q 010276          465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQV  494 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~  494 (514)
                      .|++++|...++++++..|++. ++..++.+
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            6666666666666666665543 44444444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=1.1e-14  Score=138.26  Aligned_cols=135  Identities=19%  Similarity=0.097  Sum_probs=116.3

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276          349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH  427 (514)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  427 (514)
                      .+..+..+|..+...|++++|+..|+++++.+|++ .++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35567778888999999999999999999999987 78999999999999999999999999999999999999999999


Q ss_pred             HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHhhCCC
Q 010276          428 ASNASGREKAKKFYESALRLEPGYLGAALALAEL--HVIEGRNGDAVSLLE-----------RYLKDWAD  484 (514)
Q Consensus       428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~~~  484 (514)
                      ... |++++|+..|+++++++|+++.++..++.+  +...|++++|++.++           +++...|+
T Consensus        85 ~~~-g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           85 MAL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHH-TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            998 999999999999999999999999888888  888899999999999           77766654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=1.1e-12  Score=98.85  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      .++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34566888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      |++++|...+++++...|+++.++..++.+.
T Consensus        86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999988888887664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.51  E-value=1.8e-13  Score=114.80  Aligned_cols=152  Identities=15%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             HhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHH------hcccCchhHHHHHHHHHhcCChH
Q 010276          295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIR------IDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      ..|++++|.+.++.+....+....++..+|.++.. |++++|+..+++++.      ..|....++..+|.++...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            45666666664443333222445566666665555 666666666666666      23334455666666666666666


Q ss_pred             HHHHHHHHhHhh---cCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCC
Q 010276          368 AAVIAFRGAQEL---RPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--S----AKALKLVGDVHASNASG  433 (514)
Q Consensus       368 ~A~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~  433 (514)
                      +|+..+++++..   .++.     .++..+|.++...|++++|+..+++++...+.  +    ..++..+|.++... |+
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~  162 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cC
Confidence            666666666655   2211     24566666666666666666666666654321  1    12345666666666 66


Q ss_pred             hHHHHHHHHHHHhh
Q 010276          434 REKAKKFYESALRL  447 (514)
Q Consensus       434 ~~~A~~~~~~a~~~  447 (514)
                      +++|+..+++++++
T Consensus       163 ~~~A~~~~~~al~~  176 (203)
T 3gw4_A          163 LLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=2.5e-14  Score=129.66  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------------------RSYQGLVHSYLQFSKVKEALYAAREAMK  411 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~  411 (514)
                      ...+..+|..++..|++++|+..|++++...|++                  .++.++|.++...|++++|+..+++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555543                  2788889999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCChhHHHHHHHHHHhhCCCc
Q 010276          412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.+ ....+..+++...|.+++...|++
T Consensus       259 ~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC----------------------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            9998888999999998888 899999999999988888888888888888 445567788888888888888765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.50  E-value=8.9e-13  Score=101.38  Aligned_cols=98  Identities=17%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSA---KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAE  460 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~  460 (514)
                      +.+|.++...|++++|+..+++++..+|+++   .+++.+|.++... |++++|+..|+++++.+|++   +.+++.+|.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            3344444444444444444444444444443   3444444444444 44444444444444444444   444444444


Q ss_pred             HHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          461 LHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       461 ~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ++...|++++|+..|+++++..|++
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            4444444444444444444444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=6.8e-13  Score=104.79  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      |.....+..+|..+...|++++|+..|+++++..|++    .++..+|.++...|++++|+..+++++..+|+++.+++.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4445556666666666666666666666666666653    445666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH  462 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  462 (514)
                      +|.++... |++++|+..|+++++.+|+++.++..++.+.
T Consensus       105 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            66666665 6666666666666666666666655555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=1.4e-12  Score=100.33  Aligned_cols=117  Identities=19%  Similarity=0.086  Sum_probs=104.9

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL  422 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~  422 (514)
                      +..++.+|..+...|++++|+..|+++++..|++.    +++.+|.++...|++++|+..+++++..+|++   +.+++.
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            34678899999999999999999999999999864    89999999999999999999999999999999   899999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      +|.++... |++++|+..|+++++..|+++.+......+....++
T Consensus        82 la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           82 LGLSQYGE-GKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999998 999999999999999999998887776666554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=4.1e-13  Score=103.53  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-------hHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGAAL  456 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~  456 (514)
                      ..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.++++++...|++       +.++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45677777777777888888888887777777777788888888777 88888888888887776665       67777


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhcc
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNM  500 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  500 (514)
                      .+|.++...|++++|+..++++++..|+......++.+....++
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888877766677777776665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=4.1e-13  Score=100.27  Aligned_cols=101  Identities=14%  Similarity=0.034  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG--YLGAALALAEL  461 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~  461 (514)
                      ..+..+|.++...|++++|+..++++++..|++..++..+|.++... |++++|+..|+++++.+|+  ++.++..+|.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            45566666666666666666666666666666666777777777766 7777777777777777777  67777777777


Q ss_pred             HHHc-CChhHHHHHHHHHHhhCCCc
Q 010276          462 HVIE-GRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       462 ~~~~-g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +... |++++|++.+++++...|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            7777 77777777777777766653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-12  Score=103.10  Aligned_cols=116  Identities=16%  Similarity=0.071  Sum_probs=107.0

Q ss_pred             CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      |.. ..+..+|..+...|++++|+..|++++...|++   ..++..+|.++... |++++|+..++++++.+|+++.+++
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHH
Confidence            444 679999999999999999999999999999998   89999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHH
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAA  497 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~  497 (514)
                      .+|.++...|++++|+..|+++++..|++. ++..++.+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999875 77777766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=5.2e-14  Score=133.67  Aligned_cols=124  Identities=15%  Similarity=0.101  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      ++..+|..+...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++++|+++.+++.+|.++..
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3566788889999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhCCCch-HHHHHHHH--HHHhccHHHHHHHHH
Q 010276          465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQV--FAATNMLQEALSHYE  509 (514)
Q Consensus       465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~--~~~~g~~~~A~~~~~  509 (514)
                      +|++++|+..++++++..|++. ++..++.+  +...|++++|++.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999874 88888888  889999999999998

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=9.1e-13  Score=101.53  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=99.4

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 010276          349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKAL  420 (514)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~  420 (514)
                      .+..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|++       +.++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            35677888899999999999999999999888877 778888999999999999999999999888776       8889


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      ..+|.++... |++++|+..|+++++..| ++..+..++.+....+
T Consensus        83 ~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKE-EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            9999999998 999999999999999988 5778888877766544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=2.2e-12  Score=96.26  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 010276          346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKL  422 (514)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~  422 (514)
                      +|+++..+..+|.++...|++++|+..|+++++..|.+ .++..+|.++...|++++|+..++++++..|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57778888888888888888888888888888888877 77888888888888888888888888888888  8888888


Q ss_pred             HHHHHHhcC-CChHHHHHHHHHHHhhCCCCh
Q 010276          423 VGDVHASNA-SGREKAKKFYESALRLEPGYL  452 (514)
Q Consensus       423 l~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~  452 (514)
                      +|.++.. . |++++|+.++++++...|.++
T Consensus        82 l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRY-IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTT-CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHH-HhCCHHHHHHHHHHHhhcccCCC
Confidence            8888876 5 788888888888888888653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.44  E-value=1.6e-12  Score=118.91  Aligned_cols=139  Identities=15%  Similarity=0.089  Sum_probs=92.4

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS  429 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  429 (514)
                      ...+..+|..+...|++++|+..|+++++..|...                 +....++.....|.+..++.++|.++..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777777777777777777777776433210                 0001122223556666777777777777


Q ss_pred             cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHH
Q 010276          430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALS  506 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~  506 (514)
                      . |++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|++++++.|++. ++..++.++...++.+++..
T Consensus       286 ~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          286 M-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 7777777777777777777777777777777777777777777777777777664 67777777777777766654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3e-12  Score=121.17  Aligned_cols=213  Identities=11%  Similarity=0.041  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276          283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLS  362 (514)
Q Consensus       283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      |.+....|..+...|++++|++.|.++++..|.........+.      ........          ..++..+|.+|..
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~----------~~al~~l~~~y~~   67 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASV------DDKRRNEQ----------ETSILELGQLYVT   67 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSB------CSHHHHHH----------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHH------HHHHhhhH----------HHHHHHHHHHHHH
Confidence            3445566777777777777777777777776654321110000      00001111          1124556666666


Q ss_pred             cCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHh
Q 010276          363 MKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHAS  429 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~  429 (514)
                      .|++++|++.+.+++...+..       .+...++.++...|++++|+.++++++...+      ....++..+|.++..
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  147 (434)
T 4b4t_Q           68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ  147 (434)
T ss_dssp             HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            666666666666666554332       1234456666666667777776666665322      224566667777777


Q ss_pred             cCCChHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC---Cc-----hHHHHHHHHH
Q 010276          430 NASGREKAKKFYESALRL------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD-----SLHVKLAQVF  495 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~-----~~~~~l~~~~  495 (514)
                      . |++++|...+++++..      .|....++..++.++...|++++|...+++++...+   .+     .++..+|.++
T Consensus       148 ~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~  226 (434)
T 4b4t_Q          148 K-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH  226 (434)
T ss_dssp             H-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred             c-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence            6 7777777777666653      122244666677777777777777777777665532   11     2555566666


Q ss_pred             HHhccHHHHHHHHHHHh
Q 010276          496 AATNMLQEALSHYEAAL  512 (514)
Q Consensus       496 ~~~g~~~~A~~~~~~al  512 (514)
                      ...|++++|..+|.+++
T Consensus       227 ~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          227 CEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             TSSSCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            66777777777766664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=4.2e-13  Score=101.06  Aligned_cols=92  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             cCChHHHHHHHHHhHhh---cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276          363 MKRPEAAVIAFRGAQEL---RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       363 ~~~~~~A~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      .|++++|+..|+++++.   +|++ .++..+|.++...|++++|+..++++++.+|+++.+++.+|.++... |++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHH
Confidence            35555555555555555   2433 44555555555555555555555555555555555555555555555 5555555


Q ss_pred             HHHHHHHhhCCCChHHH
Q 010276          439 KFYESALRLEPGYLGAA  455 (514)
Q Consensus       439 ~~~~~a~~~~~~~~~~~  455 (514)
                      ..+++++...|+++.+.
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            55555555555554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.44  E-value=1.3e-12  Score=119.48  Aligned_cols=139  Identities=16%  Similarity=0.079  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHH
Q 010276          317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL  394 (514)
Q Consensus       317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~  394 (514)
                      ...+..+|..+.. |++++|+..|+++++..|..+                  +....+......|.. .++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888777 999999999999998765532                  111233444455555 67888899999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHH
Q 010276          395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL  474 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  474 (514)
                      ..|++++|+..++++++.+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998899999999999988 9999999999999999998888888899888888888777643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.43  E-value=6.1e-13  Score=102.32  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR----------EKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      +.+++|+..++++++.+|+++.+|+++|.++... +++          ++|+..|+++++++|++..+++++|.+|..+|
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            3445555555555555555555555555555544 432          35555566666666655555556665555543


Q ss_pred             -----------ChhHHHHHHHHHHhhCCCch
Q 010276          467 -----------RNGDAVSLLERYLKDWADDS  486 (514)
Q Consensus       467 -----------~~~~A~~~~~~~~~~~~~~~  486 (514)
                                 ++++|+.+|+++++++|++.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                       56666666666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.42  E-value=4.1e-13  Score=121.70  Aligned_cols=137  Identities=9%  Similarity=-0.008  Sum_probs=68.8

Q ss_pred             hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276          214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----------------HILLEMAKVDAIIGKNDEAILNFEKVR  276 (514)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~  276 (514)
                      ....++.+|..++..|++++|+..|++++...|++.                 .++..+|.++...|++++|+..|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344456678888888888888888888888888765                 256666666666666666666666666


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccCc
Q 010276          277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHI  350 (514)
Q Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~  350 (514)
                      +.+|.+..+++.+|.++...|++++|+..|++++.++|+++.++..++.+...  +..+++...|.+++...|.++
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            66666666666666666666666666666666666666666666666655333  445555666666666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.2e-11  Score=117.12  Aligned_cols=211  Identities=13%  Similarity=0.061  Sum_probs=127.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD  298 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (514)
                      +..|..+...|+|++|++.|.++++..|.........+......+       ..          ..++..+|.+|...|+
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~----------~~al~~l~~~y~~~~~   70 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-------EQ----------ETSILELGQLYVTMGA   70 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-------HH----------HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-------hH----------HHHHHHHHHHHHHCCC
Confidence            344666666666666666666666665543211000000000000       00          1134455555555555


Q ss_pred             hhHHHHHHHHHhhcCCCChH------HHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCC
Q 010276          299 YSKLSKLVHDLLSIDPSRPE------VFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKR  365 (514)
Q Consensus       299 ~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  365 (514)
                      +++|.+.+.+++...+....      +...++.++.. |++++|+.++++++...+..      ..++..+|.++...|+
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  150 (434)
T 4b4t_Q           71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ  150 (434)
T ss_dssp             HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC
Confidence            55555555555544333221      22334444444 77777777777777654332      3456778888888888


Q ss_pred             hHHHHHHHHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHhcC
Q 010276          366 PEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP---QS----AKALKLVGDVHASNA  431 (514)
Q Consensus       366 ~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~~  431 (514)
                      +++|+..+++++.....      . .++..++.+|...|++++|...+++++...+   +.    ...+...|.++... 
T Consensus       151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~-  229 (434)
T 4b4t_Q          151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED-  229 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS-
T ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH-
Confidence            88888888887765221      1 4678888888888888888888888876532   22    34566777777777 


Q ss_pred             CChHHHHHHHHHHHhh
Q 010276          432 SGREKAKKFYESALRL  447 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~  447 (514)
                      +++++|..+|.++++.
T Consensus       230 ~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          230 KDYKTAFSYFFESFES  245 (434)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHH
Confidence            8888888888888764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=4.2e-13  Score=101.07  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=83.5

Q ss_pred             hcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276          395 QFSKVKEALYAAREAMKA---MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (514)
                      ..|++++|+..|+++++.   +|+++.++..+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            468999999999999999   688899999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCch
Q 010276          472 VSLLERYLKDWADDS  486 (514)
Q Consensus       472 ~~~~~~~~~~~~~~~  486 (514)
                      +..+++++...|++.
T Consensus        81 ~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           81 VELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHhCCCcH
Confidence            999999999999875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.40  E-value=1.9e-12  Score=103.96  Aligned_cols=131  Identities=18%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------  416 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------  416 (514)
                      ..++..+|.++...|++++|+..++++++..+..       .++..+|.++...|++++|+..+++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            3455666666666666666666666666654322       245556666666666666666666665543321      


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      ..++..+|.++... |++++|+..++++++..+.      ...++..+|.++...|++++|+..++++++.
T Consensus        89 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            33445555555555 5555555555555543211      1224444555555555555555555555444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.39  E-value=2e-12  Score=99.46  Aligned_cols=93  Identities=13%  Similarity=0.054  Sum_probs=82.2

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN----------DEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      +.+.+++|+..++++++.+|++++++..+|.++...+++          ++|+..|+++++++|++..+++.+|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            447899999999999999999999999999999998875          5999999999999999999999999999987


Q ss_pred             C-----------ChhHHHHHHHHHhhcCCCChHH
Q 010276          297 C-----------DYSKLSKLVHDLLSIDPSRPEV  319 (514)
Q Consensus       297 ~-----------~~~~A~~~~~~~~~~~~~~~~~  319 (514)
                      |           ++++|+.+|+++++++|++...
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            5           7888888888888888877543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.39  E-value=4.2e-12  Score=101.98  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------  451 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------  451 (514)
                      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++... |++++|+.+++++++..+..      
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            467778888888888888888888888765432      24677888888887 88888888888887764332      


Q ss_pred             hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC---c----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D----SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                      ..++..+|.++...|++++|+..++++++..+.   .    .++..+|.++...|++++|..+++++++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            446777888888888888888888888776422   1    3677788888888888888888888765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=6.8e-11  Score=88.52  Aligned_cols=99  Identities=14%  Similarity=0.030  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276          401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK  480 (514)
Q Consensus       401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  480 (514)
                      +|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467778888888888888888888888887 8888888888888888888888888888888888888888888888888


Q ss_pred             hCCCc---hHHHHHHHHHHHhcc
Q 010276          481 DWADD---SLHVKLAQVFAATNM  500 (514)
Q Consensus       481 ~~~~~---~~~~~l~~~~~~~g~  500 (514)
                      ..|+.   .....+...+...|+
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            77643   244455555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=6.9e-12  Score=93.39  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALA  457 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~  457 (514)
                      ..+..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++++|++      ..+++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777776 77777777777777777776      667777


Q ss_pred             HHHHHHHcCChhHHHHHHHH
Q 010276          458 LAELHVIEGRNGDAVSLLER  477 (514)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~  477 (514)
                      +|.++...|+++.|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            77777777777666655443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=3.5e-10  Score=80.43  Aligned_cols=81  Identities=21%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      ..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34555566666666666666666666666666666666666666655 66666666666666666666666666665555


Q ss_pred             Hc
Q 010276          464 IE  465 (514)
Q Consensus       464 ~~  465 (514)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.19  E-value=1.4e-10  Score=86.77  Aligned_cols=81  Identities=21%  Similarity=0.191  Sum_probs=52.3

Q ss_pred             HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      +|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            4556666666666665 55666666666666666666666666666666666666666666666 666666666666666


Q ss_pred             hCC
Q 010276          447 LEP  449 (514)
Q Consensus       447 ~~~  449 (514)
                      ..|
T Consensus        82 ~~~   84 (115)
T 2kat_A           82 AAQ   84 (115)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=3.5e-10  Score=80.43  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276          415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQ  493 (514)
Q Consensus       415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~  493 (514)
                      .++..++.+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++. ++..+|.
T Consensus         7 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4578899999999998 9999999999999999999999999999999999999999999999999999875 9999999


Q ss_pred             HHHHhc
Q 010276          494 VFAATN  499 (514)
Q Consensus       494 ~~~~~g  499 (514)
                      ++...|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            988765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.16  E-value=6.5e-11  Score=88.00  Aligned_cols=92  Identities=10%  Similarity=0.026  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYA  290 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  290 (514)
                      .++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++      ..++..+|
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            345568888888888888888888888888888888888888888888888888888888888887      77888888


Q ss_pred             HHHHHhCChhHHHHHHHH
Q 010276          291 MLLKVKCDYSKLSKLVHD  308 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~  308 (514)
                      .++...|+++.|+..+++
T Consensus        86 ~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           86 LAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHhHhhhHhHHHH
Confidence            888888877777655443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=2.3e-10  Score=82.91  Aligned_cols=88  Identities=15%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHH
Q 010276          412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLH  488 (514)
Q Consensus       412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~  488 (514)
                      .+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..   ...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            3678888888888888887 888888888888888888888888888888888888888888888888876543   344


Q ss_pred             HHHHHHHHHhcc
Q 010276          489 VKLAQVFAATNM  500 (514)
Q Consensus       489 ~~l~~~~~~~g~  500 (514)
                      ..+..++...+.
T Consensus        81 ~~l~~~l~~~~~   92 (100)
T 3ma5_A           81 SELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHccc
Confidence            555555554443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.08  E-value=3.1e-10  Score=82.28  Aligned_cols=90  Identities=18%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +..|..+...|++++|+..++++++.+|+++. +++.+|.++... |++++|+..|+++++.+|+++.++..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            45677777777777777777777777777777 777777777777 77888888888887777777776633        


Q ss_pred             CChhHHHHHHHHHHhhCCCc
Q 010276          466 GRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +.+.+++..|+++....|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            45566666666666655543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.06  E-value=3.2e-09  Score=81.95  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=86.9

Q ss_pred             CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHH
Q 010276          364 KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKK  439 (514)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~  439 (514)
                      +++++|+..|+++.+..+.. +.  +|.+|...+..++|+.+|+++.+.  .++.+.+.+|.+|..    . +++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF-GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK-KDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC-CCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC-ccHHHHHH
Confidence            46788888888887765333 23  888888888888888888888775  567888888888887    5 78888888


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhC
Q 010276          440 FYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  482 (514)
                      +|+++.+.  .++.+.+.||.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            88888776  567888888888888    788888888888887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.05  E-value=5e-10  Score=81.13  Aligned_cols=90  Identities=13%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      +..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            44577777888888888888888888888877 88888888888888888888888888888877766532        4


Q ss_pred             ChhHHHHHHHHHhhcCCCC
Q 010276          298 DYSKLSKLVHDLLSIDPSR  316 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~  316 (514)
                      .+.++...|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            4555566665555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.04  E-value=6.1e-09  Score=80.35  Aligned_cols=120  Identities=19%  Similarity=0.117  Sum_probs=86.6

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYA  405 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~  405 (514)
                      +++++|+.+|+++.+..  ++.+.  +|.+|...+..++|+.+|+++.+. .+..+.+.+|.+|..    .+++++|+.+
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            46678888888887765  33344  788877777778888888888765 233677888888877    7788888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276          406 AREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALA  459 (514)
Q Consensus       406 ~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  459 (514)
                      |+++.+.  .++.+.+.+|.+|..    . +++++|+.+|+++.+..  ++.+...|+
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            8888765  567788888888877    5 77888888888887763  445555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.02  E-value=1.5e-08  Score=89.46  Aligned_cols=80  Identities=8%  Similarity=0.043  Sum_probs=67.4

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276          410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV  489 (514)
Q Consensus       410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  489 (514)
                      +...|.++.++..++..+... |++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..+.++
T Consensus       270 ~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            356788888888888888877 9999999999999999875 56778889999999999999999999999999886554


Q ss_pred             HH
Q 010276          490 KL  491 (514)
Q Consensus       490 ~l  491 (514)
                      ..
T Consensus       348 ~~  349 (372)
T 3ly7_A          348 WI  349 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.00  E-value=2.5e-09  Score=77.39  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=37.7

Q ss_pred             CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      |++ .+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|++++++.|
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhh
Confidence            443 44555555555555555555555555555555555555555555555 555555555555555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.00  E-value=3.4e-08  Score=83.31  Aligned_cols=108  Identities=16%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             HhcccCchhHHHHHHHHHh-----cC------ChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhc-----CCHHHHHH
Q 010276          344 RIDERHIPGYIMKGNLLLS-----MK------RPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQF-----SKVKEALY  404 (514)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~-----~~------~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~-----~~~~~A~~  404 (514)
                      +.+|++++.++..|.+...     .|      ....|...++++++++|+.   .+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            3456666666655554422     12      2467888889999999984   5788889888884     89999999


Q ss_pred             HHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          405 AAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       405 ~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      +|+++++++|+. ...++..|..+....|++++|...+++++..+|..
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999975 88899999888774388899999999999887763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.97  E-value=6.3e-09  Score=97.93  Aligned_cols=121  Identities=12%  Similarity=-0.069  Sum_probs=57.5

Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhc-----CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHH
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELR-----PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKA  419 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~  419 (514)
                      +..+..+|++++|+..+++++++.     |++    .++.++|.+|..+|++++|+.++++++.+     .|++   ...
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            333445555555555555555431     221    23455555555555555555555555542     1222   233


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          420 LKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      +.++|.+|..+ |++++|+.+|++|+++     .|++|.   ....++.++..++.+++|...|.++
T Consensus       396 l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          396 VMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554 5555555555555442     344333   2334444444555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.95  E-value=1.2e-07  Score=83.80  Aligned_cols=155  Identities=17%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             HHHHhCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC
Q 010276          240 ELLQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP  314 (514)
Q Consensus       240 ~~~~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  314 (514)
                      ++....|.++.+|  +..|..+...++   ..+|+.+|+++++++|++..++..++.++....             ...|
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~  251 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHP  251 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCC
Confidence            3444556654433  344555555444   356777777777777777777776666665110             0001


Q ss_pred             CChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHH
Q 010276          315 SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL  394 (514)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  394 (514)
                      ........+         ..+... ..++...|.++.++..++..+...|++++|+..+++++.++|+..+|..+|.++.
T Consensus       252 ~~~~~~~~l---------~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~  321 (372)
T 3ly7_A          252 LDEKQLAAL---------NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE  321 (372)
T ss_dssp             CCHHHHHHH---------HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CchhhHHHH---------HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            111100000         112221 1233456667777777777777777888888888887777776666777777777


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCH
Q 010276          395 QFSKVKEALYAAREAMKAMPQSA  417 (514)
Q Consensus       395 ~~~~~~~A~~~~~~~~~~~p~~~  417 (514)
                      ..|++++|++.|++++.++|..+
T Consensus       322 ~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          322 MKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCcC
Confidence            77777777777777777777754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.93  E-value=6.4e-09  Score=97.88  Aligned_cols=118  Identities=6%  Similarity=-0.059  Sum_probs=81.0

Q ss_pred             cChhHHHHHHHHHHHh-----cccC---chhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRI-----DERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHS  392 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~  392 (514)
                      |++++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+     .|++    ..+.++|.+
T Consensus       323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  402 (490)
T 3n71_A          323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT  402 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            7778888888777764     2333   345677777788888888888887777765     2332    347777888


Q ss_pred             HHhcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          393 YLQFSKVKEALYAAREAMKA-----MPQSA---KALKLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      |..+|++++|+.++++++.+     .|+++   .....++.++..+ +.+++|...|.++.+..
T Consensus       403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            88888888888888877763     34443   4446677777776 77777777777765443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.93  E-value=2.3e-08  Score=84.42  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc----CCChHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH-cCChh
Q 010276          398 KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGY-LGAALALAELHVI-EGRNG  469 (514)
Q Consensus       398 ~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~  469 (514)
                      ....|...++++++++|+  +..++..+|.+|...    .|+.++|..+|+++++++|+. ..+++.+|..+.. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            357899999999999999  677999999999983    399999999999999999975 9999999999988 49999


Q ss_pred             HHHHHHHHHHhhCCCc
Q 010276          470 DAVSLLERYLKDWADD  485 (514)
Q Consensus       470 ~A~~~~~~~~~~~~~~  485 (514)
                      +|..++++++...|..
T Consensus       258 ~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          258 GFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999988873

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.84  E-value=4.8e-08  Score=68.70  Aligned_cols=74  Identities=16%  Similarity=0.084  Sum_probs=63.0

Q ss_pred             CCCcHHHHHHHHHHHHHhCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH
Q 010276          245 FPNNIHILLEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE  318 (514)
Q Consensus       245 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  318 (514)
                      +|++++++..+|.+++..++   .++|...++++++.+|+++.++..+|..+...|++++|+..++++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            67888888888888876665   688889999999999999888888999999999999999999888888887543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.81  E-value=4.1e-08  Score=69.06  Aligned_cols=72  Identities=21%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          413 MPQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       413 ~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      +|+++..+..+|.++... ++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++..|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            588899999999998765 44   6899999999999999999999999999999999999999999999998874

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.75  E-value=1.4e-06  Score=82.76  Aligned_cols=171  Identities=10%  Similarity=-0.026  Sum_probs=133.8

Q ss_pred             HHHhh-cChhHHHHHHHHHHHhcc-cCchhHHHHHHHHHhcCC---------hHHHHHHHHHhHhh--cCChHHHHHHHH
Q 010276          325 VLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKR---------PEAAVIAFRGAQEL--RPDLRSYQGLVH  391 (514)
Q Consensus       325 ~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~~~~~--~~~~~~~~~l~~  391 (514)
                      ..+.. |+.++|+..|+++.+..- .+...|..+-.++...+.         .+.|...|+++...  .|+..+|..+..
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~  113 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR  113 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            34444 999999999999887532 235566667667665543         67899999988765  577788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCh
Q 010276          392 SYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRN  468 (514)
Q Consensus       392 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~  468 (514)
                      .+.+.|++++|..+++++.... +-+...+..+-..+.+. |+.++|.+.|++..+.  .|+ ...+..+...+.+.|+.
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCH
Confidence            9999999999999999988753 23478888888888888 9999999999998875  343 57888899999999999


Q ss_pred             hHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Q 010276          469 GDAVSLLERYLKDW--ADDSLHVKLAQVFAA  497 (514)
Q Consensus       469 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~  497 (514)
                      ++|.++++++.+..  |+...+..+-..+..
T Consensus       192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            99999999987754  555566666555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=2e-07  Score=70.81  Aligned_cols=97  Identities=15%  Similarity=-0.003  Sum_probs=84.7

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhCChhHHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---KNDEAILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .....+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++.+++.+ | .+.+.++.+|..+.+.|+|++|.
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34566777888888888889999999999999988   6669999999999998 7 56899999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      ++++++++..|++..+......
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHH
Confidence            9999999999999887765543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=3.9e-07  Score=69.18  Aligned_cols=84  Identities=11%  Similarity=-0.096  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCChhHHHHHH
Q 010276          401 EALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLE-P-GYLGAALALAELHVIEGRNGDAVSLL  475 (514)
Q Consensus       401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~  475 (514)
                      .+.+.|.+.+..+|.+.++.+.+|+++.+. +   +.++++..++..++.+ | ++.+.++.+|..+++.|+|++|+.++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            344445555555555555666666655554 4   3445666666655555 4 33555566666666666666666666


Q ss_pred             HHHHhhCCCc
Q 010276          476 ERYLKDWADD  485 (514)
Q Consensus       476 ~~~~~~~~~~  485 (514)
                      +++++..|++
T Consensus        95 ~~lL~ieP~n  104 (152)
T 1pc2_A           95 RGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHhcCCCC
Confidence            6666666655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.63  E-value=9.4e-06  Score=77.11  Aligned_cols=174  Identities=12%  Similarity=0.087  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh----------cChhHHHHHHHHHHHhcc-cCchh
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER----------KDERGALSYAEKSIRIDE-RHIPG  352 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~A~~~~~~~~~~~~-~~~~~  352 (514)
                      .+......+.+.|+.++|.++|+++.+.. +.+...+..+-..+..          +..++|.+.|+++....- .+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            45566788889999999999999998753 3355566666555544          236789999998876532 24677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHh
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHAS  429 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  429 (514)
                      +..+...+.+.|++++|..+|+++.+.  .|+..+|..+...|.+.|+.++|.++++++.+.. .-+...+..+-..+.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            889999999999999999999998765  5777899999999999999999999999998753 2247888889999999


Q ss_pred             cCCChHHHHHHHHHHHhh--CCCChHHHHHHHH
Q 010276          430 NASGREKAKKFYESALRL--EPGYLGAALALAE  460 (514)
Q Consensus       430 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~  460 (514)
                      . |+.++|.+.+++..+.  .|+ ...+..+-.
T Consensus       188 ~-g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~  218 (501)
T 4g26_A          188 T-KNADKVYKTLQRLRDLVRQVS-KSTFDMIEE  218 (501)
T ss_dssp             T-TCHHHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence            8 9999999999998764  444 334433433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.51  E-value=1.7e-06  Score=62.60  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRF-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE  288 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  288 (514)
                      ...+.+|..++..|+|..|+.+|+.+++..       +..+.++..+|.++.+.|+++.|+..++++++.+|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            345666888888888888888888888742       3456778888888888888888888888888888888777666


Q ss_pred             HH
Q 010276          289 YA  290 (514)
Q Consensus       289 l~  290 (514)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.46  E-value=2.1e-06  Score=62.11  Aligned_cols=77  Identities=18%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF  320 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  320 (514)
                      ++.-.+.+|..++..|+|..|+.+|+.+++..       +....++..+|.++.+.|+++.|+..+++++...|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45667899999999999999999999999863       34577889999999999999999999999999999998887


Q ss_pred             HHHH
Q 010276          321 VALS  324 (514)
Q Consensus       321 ~~l~  324 (514)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            7776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.44  E-value=1.5e-06  Score=80.40  Aligned_cols=84  Identities=15%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             hcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHH
Q 010276          362 SMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVG  424 (514)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~  424 (514)
                      ..|+|++|+..+++++++     .|++    .++.++|.+|..+|+|++|+.++++++.+     .|++   ...++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            345666666666666554     2332    24556666666666666666666666543     2222   34455666


Q ss_pred             HHHHhcCCChHHHHHHHHHHHh
Q 010276          425 DVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       425 ~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      .+|..+ |++++|+.+|++|++
T Consensus       390 ~~~~~q-g~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGL-ENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHhc-cCHHHHHHHHHHHHH
Confidence            666665 666666666666655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.37  E-value=9.7e-07  Score=81.69  Aligned_cols=88  Identities=13%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             HhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHHH
Q 010276          394 LQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALA  457 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~  457 (514)
                      ...|++++|+..+++++.+     .|++   ..++.++|.+|..+ |++++|+.++++++.+     .|+++.   .+.+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            3568999999999999974     3555   45678999999998 9999999999999974     556654   7889


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhC
Q 010276          458 LAELHVIEGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~~~~~~  482 (514)
                      ||.+|..+|++++|+.++++++++.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=2.9e-06  Score=78.75  Aligned_cols=88  Identities=13%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHH
Q 010276          393 YLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AAL  456 (514)
Q Consensus       393 ~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~  456 (514)
                      +..+|++++|+..+++++.+     .|++   ..++.++|.+|..+ |++++|+.++++++.+     .|++|.   .++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            44566677777777776653     2333   34556677777776 7777777777777653     344443   566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhh
Q 010276          457 ALAELHVIEGRNGDAVSLLERYLKD  481 (514)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~~~~~  481 (514)
                      +||.+|..+|++++|+.++++++++
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            6777777777777777777777664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=4.2e-06  Score=77.62  Aligned_cols=102  Identities=14%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             HHhcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHH
Q 010276          360 LLSMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKL  422 (514)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~  422 (514)
                      +..+|++++|+..+++++++     .|++    .++.+++.+|..+|++++|+.++++++..     .|++   ...+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            45667788888888887765     2333    35777888888888888888888888763     2333   456778


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhh-----CCCChHHH---HHHHHHH
Q 010276          423 VGDVHASNASGREKAKKFYESALRL-----EPGYLGAA---LALAELH  462 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~---~~la~~~  462 (514)
                      +|.+|..+ |++++|+.+|++|+++     .|++|.+.   .+|+.+.
T Consensus       377 La~~~~~~-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          377 VGKLQLHQ-GMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            88888887 8888888888888764     66666533   3344444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.32  E-value=2.8e-05  Score=57.83  Aligned_cols=108  Identities=12%  Similarity=-0.049  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCh------hHHHHHHHHHhhcCCCC--------hHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 010276          279 DPYIMTYMDEYAMLLKVKCDY------SKLSKLVHDLLSIDPSR--------PEVFVALSVLWERKDERGALSYAEKSIR  344 (514)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~A~~~~~~~~~  344 (514)
                      .|.+++.|..+.......|+.      ++.++.|++++..-|..        ...|...+.....++.++|.+.|+.++.
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            455555555555555555555      55555555555544432        1223333333222666667777776666


Q ss_pred             hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHH
Q 010276          345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY  386 (514)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  386 (514)
                      .+...+.+|...|..-.++|+...|.+.+.+++...|...-.
T Consensus        89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            655556666666666667777777777777777666665333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.23  E-value=6.5e-05  Score=55.92  Aligned_cols=119  Identities=12%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             hcccCchhHHHHHHHHHhcCCh------HHHHHHHHHhHhhcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276          345 IDERHIPGYIMKGNLLLSMKRP------EAAVIAFRGAQELRPDLR--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS  416 (514)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  416 (514)
                      +.|.+++.|........+.|+.      +.-++.|++++..-|...  .|..                           .
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrr---------------------------Y   60 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNES---------------------------F   60 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHH---------------------------H
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHH---------------------------H
Confidence            3566666666666666666666      555566666665544320  0000                           1


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276          417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA  492 (514)
Q Consensus       417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  492 (514)
                      ...|...+.. ... ++.++|...|+.++++....+.+|...|....++|+...|.+.+.+++...|.+.-....+
T Consensus        61 I~LWIrYA~~-~ei-~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           61 ARIQVRFAEL-KAI-QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             HHHHHHHHHH-HHH-HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             HHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            2233333322 233 5556666666666555555555666666666666666666666666666665554333333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.19  E-value=2.4e-05  Score=57.08  Aligned_cols=97  Identities=18%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhCChhHHH
Q 010276          229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE---AILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .....+...|.+....++.+.++.+.+|+++....+...   ++..++..+..+ | ...+.++.+|..+++.|+|++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            445667777777777788889999999999999887776   999999998876 5 46788999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                      .+++.+++..|++..+......
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999887665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.14  E-value=4e-05  Score=55.88  Aligned_cols=92  Identities=10%  Similarity=-0.007  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH---HHHHHHHhHhhc-CCh--HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276          334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA---AVIAFRGAQELR-PDL--RSYQGLVHSYLQFSKVKEALYAAR  407 (514)
Q Consensus       334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~  407 (514)
                      .+...|.+....++....+.+.+|.++.+..+...   ++..++..+... |..  +..+.+|..+++.|+|++|..+++
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44445555555555556666666666666665554   666666666655 422  456666667777777777777777


Q ss_pred             HHHhhCCCCHHHHHHHHH
Q 010276          408 EAMKAMPQSAKALKLVGD  425 (514)
Q Consensus       408 ~~~~~~p~~~~~~~~l~~  425 (514)
                      .+++..|++..+......
T Consensus        99 ~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           99 GLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHH
Confidence            777777766655544433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.06  E-value=3.9e-05  Score=58.56  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhc---CCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHH
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELR---PDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSAK  418 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~  418 (514)
                      +++.-...+...|.|+.|+.....++...   |+.       .++..+|.+++..++|..|...|+++++..   +..+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45556667788888888888888766553   331       257788888888888888888888887642   22222


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF  495 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  495 (514)
                      ....++.    . .....       .... +.+.++.+.++.|+.+.|++++|+..++.+-....+..+...||..|
T Consensus       102 ~~~~~~~----~-ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTGN----S-ASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             ccccccc----c-CCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence            1111110    0 01111       1111 34567889999999999999999999887655555567888888776

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=98.01  E-value=0.002  Score=48.74  Aligned_cols=130  Identities=21%  Similarity=0.266  Sum_probs=99.2

Q ss_pred             chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      .+.-.+..-++-.+|+.++.++..|..-           ..+--.+++..++-.|+|.+|+-.+..              
T Consensus         4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~-----------~~eY~lL~~I~LyyngEY~R~Lf~L~~--------------   58 (242)
T 3kae_A            4 KLIGKICKSIRYRDYETAIFLAACLLPC-----------KPEYRMLMSIVLYLNGEYTRALFHLHK--------------   58 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHC---------------CTHHHHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHccC-----------ChHHHhhhhhhhhhcchHhHHHHHHHh--------------
Confidence            4556677788899999999988877541           112447788999999999998776653              


Q ss_pred             hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------CCccHH-H
Q 010276           83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS------------------KARNLQ-M  143 (514)
Q Consensus        83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~-~  143 (514)
                                            .+.....+..+.|+...+++..|+..++++..                  +|.+.+ .
T Consensus        59 ----------------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF  116 (242)
T 3kae_A           59 ----------------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF  116 (242)
T ss_dssp             ----------------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred             ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence                                  25567788889999999999999999887531                  123333 3


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHH
Q 010276          144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT  179 (514)
Q Consensus       144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  179 (514)
                      +..+|.++.+.|+.++|+..|.......|-.+.+-.
T Consensus       117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn  152 (242)
T 3kae_A          117 ESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN  152 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence            467899999999999999999999999996555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.47  E-value=0.0058  Score=45.34  Aligned_cols=80  Identities=10%  Similarity=-0.038  Sum_probs=67.3

Q ss_pred             CCcHHHHHHHHHHHHHhCChH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHH
Q 010276          246 PNNIHILLEMAKVDAIIGKND---EAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV  321 (514)
Q Consensus       246 p~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  321 (514)
                      +.++++.+.+|+++....+.+   +++..++..+..+|. ..+.++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            456789999999999887654   688999999988884 5678899999999999999999999999999999987765


Q ss_pred             HHHH
Q 010276          322 ALSV  325 (514)
Q Consensus       322 ~l~~  325 (514)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.43  E-value=0.0063  Score=45.12  Aligned_cols=71  Identities=7%  Similarity=-0.085  Sum_probs=34.6

Q ss_pred             chhHHHHHHHHHhcCCh---HHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276          350 IPGYIMKGNLLLSMKRP---EAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL  420 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  420 (514)
                      +.+.+++|.++.+..+.   .+++.+++..+...|..  +.++.++..+.+.|+|++|..+.+.+++..|++..+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            34444555555444432   23445555555444432  3445555555555555555555555555555554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.42  E-value=0.0043  Score=45.37  Aligned_cols=69  Identities=10%  Similarity=0.046  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276          384 RSYQGLVHSYLQFSKV---KEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG  453 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  453 (514)
                      .+.+++++++.+..+.   .+++.+++..+...|. .-+.++.+|..+.+. |+|++|.++.+..++..|++..
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTCHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCHH
Confidence            3444444444443322   2344444444444432 233444444444444 4444444444444444444433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.41  E-value=0.1  Score=50.43  Aligned_cols=65  Identities=11%  Similarity=0.064  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276          110 VKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI  178 (514)
Q Consensus       110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  178 (514)
                      ..+.-+.-.+..|++..+......+...|-.+-  .....+-...+..  .-..+...+..+|+.+...
T Consensus         8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~y--l~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~   72 (618)
T 1qsa_A            8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPY--LEYRQITDDLMNQ--PAVTVTNFVRANPTLPPAR   72 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHH--HHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHH--HHHHHHHhCcccC--CHHHHHHHHHHCCCChhHH
Confidence            446667777889999999888887755555332  2222222232321  2225566677788776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.37  E-value=0.0034  Score=45.88  Aligned_cols=78  Identities=10%  Similarity=-0.049  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHhCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276          248 NIHILLEMAKVDAIIGKN---DEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                      ++.+.+.+|+++.+..+.   .+++..++..++.+|. ..+.++.+|..+.+.|+|++|.++.+.+++..|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            568888888888888764   4688888888888874 477888899999999999999999999999999988776554


Q ss_pred             HH
Q 010276          324 SV  325 (514)
Q Consensus       324 ~~  325 (514)
                      ..
T Consensus       119 ~~  120 (134)
T 3o48_A          119 SM  120 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.35  E-value=0.13  Score=49.89  Aligned_cols=164  Identities=9%  Similarity=-0.034  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276          332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAM  410 (514)
Q Consensus       332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  410 (514)
                      ..++...+.+.....+++.. .-.++......|+++.|...++.+-...+. ....+-+|.++...|+.++|...|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44555555554433322222 222222334456666666666554332212 2445566666666666666666666665


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-----LGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .  +.+  .|-.++.-.  . |.... ...    ....+..     ...-...+..+...|....|...+....... ++
T Consensus       347 ~--~~~--fYg~lAa~~--L-g~~~~-~~~----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~~  413 (618)
T 1qsa_A          347 Q--QRG--FYPMVAAQR--I-GEEYE-LKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SK  413 (618)
T ss_dssp             T--SCS--HHHHHHHHH--T-TCCCC-CCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CH
T ss_pred             c--CCC--hHHHHHHHH--c-CCCCC-CCC----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-CH
Confidence            4  221  121222111  1 21100 000    0000100     0122455667788899999988888777643 33


Q ss_pred             hHHHHHHHHHHHhccHHHHHHHHH
Q 010276          486 SLHVKLAQVFAATNMLQEALSHYE  509 (514)
Q Consensus       486 ~~~~~l~~~~~~~g~~~~A~~~~~  509 (514)
                      .-...++.+....|.+..++....
T Consensus       414 ~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          414 TEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHH
Confidence            444566777778888877765443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.22  E-value=0.048  Score=49.28  Aligned_cols=92  Identities=14%  Similarity=-0.030  Sum_probs=68.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHhhcCC-----h--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCH----HHH
Q 010276          355 MKGNLLLSMKRPEAAVIAFRGAQELRPD-----L--RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSA----KAL  420 (514)
Q Consensus       355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~  420 (514)
                      .+|.+|+..|+|.+|.+.+.+..+....     .  +.+.....+|...+++.++...+.++....   +.+|    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6888999999999999888888765322     1  456777888899999999999998886532   1222    344


Q ss_pred             HHHHHHHH-hcCCChHHHHHHHHHHHhh
Q 010276          421 KLVGDVHA-SNASGREKAKKFYESALRL  447 (514)
Q Consensus       421 ~~l~~~~~-~~~~~~~~A~~~~~~a~~~  447 (514)
                      ..-|..+. .. ++|..|...|-++++.
T Consensus       184 ~~~Gi~~l~~~-rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADE-RDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhc-cCHHHHHHHHHHHHhc
Confidence            56677777 66 9999999998888754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0057  Score=60.15  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      .+...+..+..+ |+++-|+.+.++++...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            444556666665 77777777777777777777777777777777777777777666654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.08  E-value=0.012  Score=49.18  Aligned_cols=128  Identities=11%  Similarity=0.091  Sum_probs=97.7

Q ss_pred             HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276          116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL  194 (514)
Q Consensus       116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~  194 (514)
                      ..+++.|..++|++.+.. +...|.+......+.++++-.|++++|.+.++.+.+++|........+..+- ..+..   
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-~aE~~---   80 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-KAAQA---   80 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHH---
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-HHHHH---
Confidence            346789999999998887 7778999999999999999999999999999999999998766553332211 11111   


Q ss_pred             HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276          195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN  248 (514)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~  248 (514)
                       ....-.....|.....+..|......+......|+.++|...-.++++..|..
T Consensus        81 -R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           81 -RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             -HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             -HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence             11111223344445567889999999999999999999999999998877654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.99  E-value=0.12  Score=52.76  Aligned_cols=164  Identities=15%  Similarity=0.050  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCCh
Q 010276          287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP  366 (514)
Q Consensus       287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      ...+..+...|.+++|+...+        ++...+.  .....|++++|.+..+.     .+++..|..+|..+...+++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~--~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~  697 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQKFE--LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNF  697 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHHHH--HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchhee--hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCH
Confidence            444555556666666654431        2222111  12233777777665432     24466777888888888888


Q ss_pred             HHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276          367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR  446 (514)
Q Consensus       367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  446 (514)
                      +.|+.+|.++-.       +..+..++...|+.                  +.+..++...... |++..|...|.+.  
T Consensus       698 ~~A~~~y~~~~d-------~~~l~~l~~~~~~~------------------~~~~~~~~~a~~~-~~~~~A~~~~~~~--  749 (814)
T 3mkq_A          698 KLAIEAFTNAHD-------LESLFLLHSSFNNK------------------EGLVTLAKDAETT-GKFNLAFNAYWIA--  749 (814)
T ss_dssp             HHHHHHHHHHTC-------HHHHHHHHHHTTCH------------------HHHHHHHHHHHHT-TCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHccC-------hhhhHHHHHHcCCH------------------HHHHHHHHHHHHc-CchHHHHHHHHHc--
Confidence            888887776511       11222222223333                  3333444444444 5555555444331  


Q ss_pred             hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHH
Q 010276          447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQ  502 (514)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~  502 (514)
                         ++   ......+|...+++++|+.+.++   ..|..    .+....+.-+...|+.+
T Consensus       750 ---g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          750 ---GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             ---TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             ---CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence               11   11223345556777777776554   44554    45555566666666543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0087  Score=58.90  Aligned_cols=58  Identities=22%  Similarity=0.208  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA  409 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (514)
                      .+..-+..+...|+++-|+.+-++++...|+. ..|..|+.+|..+|+++.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44555667777888888888888888888886 78888888888888888888777655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.80  E-value=0.048  Score=49.24  Aligned_cols=90  Identities=19%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC---CCChH----H
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQ--S----AKALKLVGDVHASNASGREKAKKFYESALRLE---PGYLG----A  454 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~----~  454 (514)
                      .+|..|...|+|.+|...+.+..+....  +    .+++.....+|... +++.++...+.++....   +.+|.    .
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            4555556666666665555555442111  1    23344444555555 55555555555554321   11111    2


Q ss_pred             HHHHHHHHH-HcCChhHHHHHHHHH
Q 010276          455 ALALAELHV-IEGRNGDAVSLLERY  478 (514)
Q Consensus       455 ~~~la~~~~-~~g~~~~A~~~~~~~  478 (514)
                      ...-|.++. ..++|..|...|-.+
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHH
Confidence            223344444 455555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.45  E-value=0.16  Score=51.77  Aligned_cols=46  Identities=7%  Similarity=-0.031  Sum_probs=33.4

Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276          118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC  167 (514)
Q Consensus       118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  167 (514)
                      .+..|++++|.+..+.+    .++..|..+|..+.+.|+++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            35677777777776655    45667777777777778877777777765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.57  Score=43.50  Aligned_cols=201  Identities=11%  Similarity=0.047  Sum_probs=114.1

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCC-CChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST   82 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   82 (514)
                      .+..++.+. .|++..|+..   ++.+...+.. .........+..+...++..|+++...+.+.-..............
T Consensus        20 ~~~~~~~l~-~~~~~~a~e~---ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~   95 (445)
T 4b4t_P           20 EFPKIDSLA-QNDCNSALDQ---LLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY   95 (445)
T ss_dssp             --------C-HHHHHHHHHH---HHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHH---HHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            344455553 4677766653   3333222111 1233345567778888999999988877665544433222222222


Q ss_pred             hhhh---hhhc-cccCCC--C---ccc---cc----ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Cc
Q 010276           83 SSRS---SLST-SNRSSS--P---NSF---NV----SAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-------AR  139 (514)
Q Consensus        83 ~~~~---~~~~-~~~~~a--~---~~~---~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~  139 (514)
                      +...   ++.. ...+..  .   ..+   ..    .......+...|+..+...|++.+|..++..+...       ..
T Consensus        96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~  175 (445)
T 4b4t_P           96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE  175 (445)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence            2111   1110 000000  0   000   00    01113445678999999999999999999886321       22


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHh---cCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276          140 NLQMSLLMAKLYRNSRHNRGAVACYKECLR---HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL  216 (514)
Q Consensus       140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (514)
                      -.+.+....+++...+++.+|...++++..   ..+..+.....+                                   
T Consensus       176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~-----------------------------------  220 (445)
T 4b4t_P          176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY-----------------------------------  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH-----------------------------------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH-----------------------------------
Confidence            356778889999999999999999998742   233333333222                                   


Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQR  244 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~  244 (514)
                       ....|..+...++|.+|...|..+...
T Consensus       221 -~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          221 -YNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             -HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             234488888999999999999988763

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.23  E-value=1.2e-05  Score=72.46  Aligned_cols=139  Identities=10%  Similarity=0.051  Sum_probs=85.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      ++...|+|..|++..+++     +++.+|-....+....+++.-|..+--.++- .|+.   +-.+...|...|.+++-+
T Consensus       179 tLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELI  249 (624)
T 3lvg_A          179 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELI  249 (624)
T ss_dssp             SSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTST
T ss_pred             HHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHH
Confidence            333444444444443332     3455666666666666666666555444332 2222   123445567788888889


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHh-c-c------cCchhHHHHHHHHHhcCChHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRI-D-E------RHIPGYIMKGNLLLSMKRPEAAVI  371 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~A~~  371 (514)
                      .+++..+.+..-+...+..+|.+|..=++++-.+.++..... + |      +....|..+..+|..-.+|+.|..
T Consensus       250 sLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          250 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             TTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            999999888888888888999988886666666665542221 1 1      124456777777777778877653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.01  E-value=0.1  Score=43.61  Aligned_cols=121  Identities=13%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      ....++.|+.++|++.....++..|.+......+...++-.|+++.|.+.++.+.+++|........+-.+.       .
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~   76 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K   76 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence            344567799999999999999999999999999999999999999999999999999998754322211110       0


Q ss_pred             HHHHHHHHhh-----cCCCChHHHHHHHH----HHhhcChhHHHHHHHHHHHhcccC
Q 010276          302 LSKLVHDLLS-----IDPSRPEVFVALSV----LWERKDERGALSYAEKSIRIDERH  349 (514)
Q Consensus       302 A~~~~~~~~~-----~~~~~~~~~~~l~~----~~~~~~~~~A~~~~~~~~~~~~~~  349 (514)
                      |...=.+++.     ..+..+..|...-.    ....|+.++|...-.++++..|..
T Consensus        77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            1111111221     12223333433221    112288888888888887776554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.91  E-value=1.7  Score=43.97  Aligned_cols=264  Identities=9%  Similarity=0.013  Sum_probs=122.0

Q ss_pred             HHhcCHHHHHHHHHHHHHhC-CCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC------CH----HHHHHHH
Q 010276          226 IASNDYKGGLELFAELLQRF-PNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IM----TYMDEYA  290 (514)
Q Consensus       226 ~~~~~~~~A~~~~~~~~~~~-p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~l~  290 (514)
                      ...|+.++++..+.+.+... .++    ..+.+.+|.++...  .+++...+...+..+..      ..    .+-..+|
T Consensus       385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            44566667766666655421 122    23444455554433  34567766666654320      11    2334455


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCCh--HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRP--EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE  367 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      .++.-.++ +++...+..++..+....  .+-..+|.++.. |+.+-....+..+.+...+...-...+|..+...|+.+
T Consensus       463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred             HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence            55544443 445555555554322111  122334444444 44433333333333322222222233444455667766


Q ss_pred             HHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276          368 AAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       368 ~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      .+....+.... .++.    .+-..+|..|...|+...-..++..+..-..++..-...+|...... |+.+.+.+.+..
T Consensus       542 ~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~-g~~e~v~rlv~~  619 (963)
T 4ady_A          542 LADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL-RDYTTVPRIVQL  619 (963)
T ss_dssp             GGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS-SSCSSHHHHTTT
T ss_pred             HHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc-CCHHHHHHHHHH
Confidence            66655555433 2232    23456677777788865444466655543222232222333333333 554444443332


Q ss_pred             HHhhCCCChHHHHHHHHHHHHc--CC-hhHHHHHHHHHHhhCCCch----HHHHHHHHHHH
Q 010276          444 ALRLEPGYLGAALALAELHVIE--GR-NGDAVSLLERYLKDWADDS----LHVKLAQVFAA  497 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~~--g~-~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~  497 (514)
                      ..+  ..++.+.+..+.++-..  |+ ..+++..+.+... ++++.    +...||.+...
T Consensus       620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTT
T ss_pred             HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcC
Confidence            222  23455555544444333  33 2567777777643 44442    44455554433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.46  Score=37.08  Aligned_cols=102  Identities=13%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK  438 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~  438 (514)
                      +....|+++.|.+..+..    .+...|..+|......|+++-|..+|+++-.     .   ..+..+|... |+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~~t-g~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYLVT-GDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHHHH-TCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHHHh-CCHHHHH
Confidence            446788999988887654    2336789999999999999998888877532     2   2233334444 7766555


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      +.-+.+...+ +    +.....++...|+++++++.|.+.
T Consensus        81 kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5444443322 1    122334566788999998888653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.85  E-value=0.16  Score=51.47  Aligned_cols=96  Identities=9%  Similarity=-0.109  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhh-cChhHHHHHHHHHHHh----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHH
Q 010276          318 EVFVALSVLWER-KDERGALSYAEKSIRI----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLV  390 (514)
Q Consensus       318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  390 (514)
                      ..+..+-..+.. |+.++|...|..+.+.    ..-+...|..+...+.+.|+.++|.+.|+++.+.  .|+..+|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            345555555555 8889999888765432    1234677888888889999999999999888765  47778888888


Q ss_pred             HHHHhcCCH-HHHHHHHHHHHhhC
Q 010276          391 HSYLQFSKV-KEALYAAREAMKAM  413 (514)
Q Consensus       391 ~~~~~~~~~-~~A~~~~~~~~~~~  413 (514)
                      .++.+.|+. ++|..+++++....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            888888874 67888888888754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.69  E-value=0.19  Score=45.77  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=57.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKA-KKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A-~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      .+......|+.+.|...+++++.+.....-         ... ...+-.+ ...+++.      ...+...++..+...|
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L---------~~~~~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g  185 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVL---------DDLRDFQFVEPFATALVED------KVLAHTAKAEAEIACG  185 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTT---------GGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCC---------CCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence            344445578999999999999987533210         000 0111111 1111111      0123344555556666


Q ss_pred             ChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                      ++.+|+..+..++..+|-++ ++..+..++...|+..+|+..|+++
T Consensus       186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666666554 5666666666666666666666554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=1.4  Score=40.91  Aligned_cols=190  Identities=11%  Similarity=0.105  Sum_probs=121.4

Q ss_pred             cCCHHHHHHHHhcC------CC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc------C
Q 010276          121 LGETKAAIVEMEGI------PS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA------T  187 (514)
Q Consensus       121 ~g~~~~A~~~~~~~------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~------~  187 (514)
                      .|++++|++.+..+      .. .+....+...+..++...|+++...+.+.-..+.......+...+.+...      .
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            46788887765332      22 25678888888899999999988877776666655555555444433211      1


Q ss_pred             cccH---hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHH
Q 010276          188 PKDI---ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--PNN----IHILLEMAKV  258 (514)
Q Consensus       188 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~la~~  258 (514)
                      ..+.   ....+.........  .............++..+...|++.+|..++..+....  ..+    .+++....++
T Consensus       109 ~~d~~~~~~~i~~l~~vte~k--iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENK--IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCC--CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1111   11111111111100  01122233334567999999999999999999987521  111    5677888899


Q ss_pred             HHHhCChHHHHHHHHHHHh---hCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHhhc
Q 010276          259 DAIIGKNDEAILNFEKVRS---IDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI  312 (514)
Q Consensus       259 ~~~~~~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  312 (514)
                      +...+++.+|...+.++..   ..+..    ...+...|.++...++|.+|-..|..++..
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9999999999999988743   22333    235667788888899999999888888753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.63  E-value=2.4  Score=44.94  Aligned_cols=141  Identities=9%  Similarity=-0.081  Sum_probs=73.8

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc----------------------
Q 010276          255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI----------------------  312 (514)
Q Consensus       255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------  312 (514)
                      +...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++..-                      
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3334444555544433    22334444445555566666666666666555554211                      


Q ss_pred             -CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch-----hHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHH
Q 010276          313 -DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS  385 (514)
Q Consensus       313 -~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  385 (514)
                       ....+..+..+..++.. +-++.+++....+++..+.+..     .|..+-..+...|+|++|...+...-...-....
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence             01112334444445554 7777888888777775543322     4566667777888888887766544322222244


Q ss_pred             HHHHHHHHHhcCCH
Q 010276          386 YQGLVHSYLQFSKV  399 (514)
Q Consensus       386 ~~~l~~~~~~~~~~  399 (514)
                      +..+....+..|..
T Consensus       974 Lr~LV~~lce~~~~  987 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhCCCh
Confidence            44554444544443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.53  E-value=0.17  Score=51.23  Aligned_cols=100  Identities=10%  Similarity=-0.089  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHH
Q 010276          384 RSYQGLVHSYLQFSKVKEALYAAREAMKA----MPQSAKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALA  457 (514)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~  457 (514)
                      ..+..+...|.+.|+.++|..++.++.+.    ..-+...|+.+-..+.+. |+.++|.+.|++..+.  .| +...|..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~-G~~~eA~~Lf~eM~~~G~~P-DvvTYnt  205 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ-GAFKELVYVLFMVKDAGLTP-DLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence            46899999999999999999999876532    233588999999999998 9999999999998774  45 4678888


Q ss_pred             HHHHHHHcCCh-hHHHHHHHHHHhhCCCc
Q 010276          458 LAELHVIEGRN-GDAVSLLERYLKDWADD  485 (514)
Q Consensus       458 la~~~~~~g~~-~~A~~~~~~~~~~~~~~  485 (514)
                      +..++.+.|+. ++|.++|+++.+..-.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~P  234 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKL  234 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence            88899999985 78899999999876443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.34  E-value=0.31  Score=44.37  Aligned_cols=96  Identities=10%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHhCChHHHHHH
Q 010276          214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILN  271 (514)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~  271 (514)
                      .+......|......|+.+.|...+++++......                      ..+...++..+...|++.+++..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            33444445555566789999999999998754221                      01223344555566666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276          272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL  309 (514)
Q Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  309 (514)
                      +..++..+|-+..++..+..++...|+..+|+..|+++
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666666666666666666666666554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.07  E-value=0.83  Score=34.91  Aligned_cols=114  Identities=12%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCHHHHHHH
Q 010276          106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH----CPFFIEAITAL  181 (514)
Q Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l  181 (514)
                      ..++-...++.+++-.|.+..++-++-++    +...+.+..+.||...+++..|+.+++.+++.    +|+- ++.  +
T Consensus        31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~--~  103 (242)
T 3kae_A           31 CKPEYRMLMSIVLYLNGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR--I  103 (242)
T ss_dssp             ---CTHHHHHHHHHHTTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH--H
T ss_pred             CChHHHhhhhhhhhhcchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc--c
Confidence            33456677888888999999999998876    66778888999999999999999999999943    3431 111  1


Q ss_pred             HHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 010276          182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI  249 (514)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~  249 (514)
                      -.....                     ..+.  -......|..+...|+-++|+..+.......|--+
T Consensus       104 ~~ffvd---------------------~~Dk--EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          104 QEMFVD---------------------PGDE--EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             HTTSCC---------------------TTCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ceeeec---------------------cchH--HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence            011111                     1111  12233558888899999999999988887776543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.94  E-value=0.36  Score=44.69  Aligned_cols=98  Identities=7%  Similarity=-0.032  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----HHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QS----AKA  419 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~  419 (514)
                      ..++..+|..+...|+++.|.+.|.++.......    ..+.....++...+++..+...+.++.....  .+    ...
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            4467788999999999999999998887764432    5677788888888999999888888865421  12    233


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          420 LKLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      ....|.++... ++|..|...|-.++...
T Consensus       211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLAV-RNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGGT-SCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHh-ChHHHHHHHHHHHhccC
Confidence            45566677776 88988888888877643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.036  Score=51.48  Aligned_cols=150  Identities=11%  Similarity=-0.007  Sum_probs=60.2

Q ss_pred             HHHhhhhhhHHHhHHHHHH---HhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276           10 ALIDQGLYDSAQMLGCFLV---SSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS   86 (514)
Q Consensus        10 ~l~~~~~~~~a~~~~~~ll---~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   86 (514)
                      .++.++.|+.+..++..++   .+...+...-+...+..|+..+.++-..|+.............+.|...   .. -+.
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll---~~-~rt  220 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMM---KF-LKI  220 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHH---HH-HHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHH---HH-HHH
Confidence            4678888998888877665   2222344444556677788888777777776654433333332222110   00 000


Q ss_pred             hhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC--CCC--C--ccHHHHHHHHHHHHhcCChhhH
Q 010276           87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI--PSK--A--RNLQMSLLMAKLYRNSRHNRGA  160 (514)
Q Consensus        87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~--~--~~~~~~~~l~~~~~~~g~~~~A  160 (514)
                      ...           ..-......++..+-+.|+..+.++.|..+..+.  +..  +  .....++.+|+++.-+++|.+|
T Consensus       221 a~l-----------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA  289 (523)
T 4b4t_S          221 ASL-----------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA  289 (523)
T ss_dssp             CCS-----------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             Hhc-----------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence            000           0000123456678889999999999999999984  322  1  2245678899999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q 010276          161 VACYKECLRHCPFF  174 (514)
Q Consensus       161 ~~~~~~~l~~~p~~  174 (514)
                      ...+..+++..|.+
T Consensus       290 ~~~L~~A~rkap~~  303 (523)
T 4b4t_S          290 NEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHhCCcc
Confidence            99999999998854

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.32  E-value=0.32  Score=45.58  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN  430 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  430 (514)
                      .+..+|++......++.|..+|.+|..+.|+. ..++.+|.+....|+.-+|+-+|-+++......+.+..++...+...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            56779999999999999999999999999998 89999999999999999999999999987777788888888887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.05  E-value=2.6  Score=44.72  Aligned_cols=82  Identities=10%  Similarity=-0.105  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hH----HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276          418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG----AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA  492 (514)
Q Consensus       418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  492 (514)
                      ..+..+..++.+. +.++.+++..+.|++..+.+ ..    .|..+-..+...|+|++|...+...-...-....+..+.
T Consensus       900 ~YY~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV  978 (1139)
T 4fhn_B          900 CYYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4455556666666 77777777777777654332 21    455666667777777777776654432221223444444


Q ss_pred             HHHHHhcc
Q 010276          493 QVFAATNM  500 (514)
Q Consensus       493 ~~~~~~g~  500 (514)
                      ...+..|.
T Consensus       979 ~~lce~~~  986 (1139)
T 4fhn_B          979 NQLTKQGK  986 (1139)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHhCCC
Confidence            44444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.00  E-value=1.9  Score=40.28  Aligned_cols=61  Identities=16%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      ++.+...|...+.+++|..+..++.  .|.+       ...++.+|.++... ++|.+|.+++..|+...|
T Consensus       234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC
Confidence            4444555555555555555555542  2221       23344455555555 555555555555555444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.87  E-value=0.49  Score=44.34  Aligned_cols=75  Identities=11%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK  294 (514)
Q Consensus       220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (514)
                      .+|........+..|..+|.++....|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus       157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            345555555556666666666666666666666666666666666666666666666554445555555554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.85  E-value=6.4  Score=39.98  Aligned_cols=176  Identities=11%  Similarity=0.013  Sum_probs=92.6

Q ss_pred             cChhHHHHHHHHHHHhc-ccC----chhHHHHHHHHHhcCChHHHHHHHHHhHhhcC-------Ch----HHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRID-ERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-------DL----RSYQGLVHSY  393 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~----~~~~~l~~~~  393 (514)
                      |+.++++..+.+.+... ..+    ..+.+.+|.++...+  .++...+...+....       ..    .+-..+|.++
T Consensus       388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~  465 (963)
T 4ady_A          388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA  465 (963)
T ss_dssp             SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence            66667777776655421 111    223444555544443  467777777665433       11    2455677776


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (514)
                      ...++ +++.+.+...+..+....  .+-..+|.++... |+-+-....+..+.+-..+...-...+|..+...|+.+.+
T Consensus       466 ~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~  543 (963)
T 4ady_A          466 MGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA  543 (963)
T ss_dssp             TTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred             cCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence            66665 456666666665332211  2345667777766 6655555555555543222111112233334456777766


Q ss_pred             HHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276          472 VSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEA  510 (514)
Q Consensus       472 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~  510 (514)
                      -...+.... .+++    ..-+.+|..|...|+...-...+..
T Consensus       544 ~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~  585 (963)
T 4ady_A          544 DDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV  585 (963)
T ss_dssp             HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            666665443 3333    2445567777778886444434443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.73  E-value=3.3  Score=36.24  Aligned_cols=41  Identities=15%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             HHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276          125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYK  165 (514)
Q Consensus       125 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  165 (514)
                      ++|+.+-.+... ...+++.+..+|..+.+.+++.+|...|-
T Consensus       119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            455555554322 24689999999999999999999998873

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.43  E-value=2.2  Score=33.30  Aligned_cols=101  Identities=16%  Similarity=0.132  Sum_probs=62.0

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276          224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS  303 (514)
Q Consensus       224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  303 (514)
                      .....|+++.|.++.+.+     ++...|..+|......|+++-|..+|.++-..        ..+..+|...|+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHH
Confidence            345678999988887765     56788888999999999999888888876332        23444555666665555


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHH
Q 010276          304 KLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEK  341 (514)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~  341 (514)
                      +..+.+.....    ........+..|+++++++.|.+
T Consensus        81 kla~iA~~~g~----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           81 KMQNIAQTRED----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHCcc----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444333211    11111112233666666666544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.28  E-value=1  Score=41.65  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--CCCH----HHHHHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--PYIM----TYMDEY  289 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~l  289 (514)
                      ..+|..+...|+++.|.+.|.++.....   ...+.+....+++...+++..+...+.++....  ..++    ......
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~  214 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY  214 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence            4568888899999999999988876432   236788888888888999999998888886542  1122    233445


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcC
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSID  313 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~  313 (514)
                      |.++...++|..|...|-.++...
T Consensus       215 gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          215 GIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhChHHHHHHHHHHHhccC
Confidence            666677788888888887776543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.12  E-value=1.2e-05  Score=72.66  Aligned_cols=264  Identities=14%  Similarity=0.147  Sum_probs=174.9

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      .|.-|..+   |..++..+...+|++.|-++  .+|.+   +.....+..+.|++++-+.++..+-+. ...+..-..+.
T Consensus        53 ~p~VWs~L---gkAqL~~~~v~eAIdsyIkA--~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQL---AKAQLQKGMVKEAIDSYIKA--DDPSS---YMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELI  123 (624)
T ss_dssp             CCCCSSSH---HHHTTTSSSCTTTTTSSCCC--SCCCS---SSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHH
T ss_pred             CccHHHHH---HHHHHccCchHHHHHHHHhC--CChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHH
Confidence            34445443   88888888888888877554  34433   444555666778888888888776654 33334445666


Q ss_pred             HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH
Q 010276          291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV  370 (514)
Q Consensus       291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  370 (514)
                      .+|.+.++..+-.+.+     ..|+...+...--.++..|.|+.|.-+|.        +..-|..++.++..+|+|..|+
T Consensus       124 ~ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys--------~isN~akLAstLV~L~~yq~AV  190 (624)
T 3lvg_A          124 FALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYN--------NVSNFGRLASTLVHLGEYQAAV  190 (624)
T ss_dssp             HHHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGG--------GSCCCTTTSSSSSSCSGGGSST
T ss_pred             HHHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHH--------hCccHHHHHHHHHHHHHHHHHH
Confidence            7777777765543322     13554444433344666677777765553        3445667888899999999988


Q ss_pred             HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276          371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG  450 (514)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~  450 (514)
                      +.-+++    .+..+|.....++...+++.-|..+--..+- .|+.   +-.+...|... |-+++-+..++.++.+...
T Consensus       191 daArKA----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~-G~f~ELIsLlEaglglErA  261 (624)
T 3lvg_A          191 DGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDR-GYFEELITMLEAALGLERA  261 (624)
T ss_dssp             TTTTTC----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTT-CCCTTSTTTHHHHTTSTTC
T ss_pred             HHHHhc----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhC-CCHHHHHHHHHHHhCCCch
Confidence            776665    2336788888888888888877666555442 2322   12234456666 9999999999999998888


Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--C-------CchHHHHHHHHHHHhccHHHHHH
Q 010276          451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW--A-------DDSLHVKLAQVFAATNMLQEALS  506 (514)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~  506 (514)
                      +......||.+|.+- ++++-.+.++.....-  |       ....|..+..+|.+-.+++.|..
T Consensus       262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            888888999888764 5666666655432211  2       22588888899999899988764

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.36  E-value=22  Score=30.85  Aligned_cols=41  Identities=5%  Similarity=-0.148  Sum_probs=32.1

Q ss_pred             HHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276          125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYK  165 (514)
Q Consensus       125 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  165 (514)
                      ++|+.+-.+... .-.++..+..+|..+...|++.+|...|-
T Consensus       117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            456666665533 34689999999999999999999988775

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.70  E-value=3.6  Score=27.50  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=29.8

Q ss_pred             ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276           38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY   72 (514)
Q Consensus        38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   72 (514)
                      ++-..+..+-.+++.+.+.|.|++||++.+++...
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y   44 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   44 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45566778888999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 7e-17
 Identities = 66/405 (16%), Positives = 138/405 (34%), Gaps = 43/405 (10%)

Query: 113 KIASCHFALGETKAAIVEMEGIPSKA-RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171
           ++A   +  G+ +AA      +  +   N  + LL++ ++   R    +       ++  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY 231
           P   EA + L  +      +        +     P             V A     +   
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291
                 +   LQ  P+   +  ++  +   +G+ +EA   + K     P           
Sbjct: 124 ------YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177

Query: 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHI 350
           +   + +           +++DP+  + ++ L +VL E +    A++   +++ +   H 
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237

Query: 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA 409
             +     +       + A+  +R A EL+P    +Y  L ++  +   V EA      A
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNG 469
           ++  P  A +L  + ++     +  E+A + Y  AL + P +  A               
Sbjct: 298 LRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAA--------------- 341

Query: 470 DAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514
                             H  LA V      LQEAL HY+ A+R+
Sbjct: 342 ------------------HSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 60/424 (14%), Positives = 127/424 (29%), Gaps = 51/424 (12%)

Query: 46  LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAI 105
            + L    ++  ++  A     Q  +                         P++      
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQE-----------------------PDNT----- 33

Query: 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYK 165
               V   ++S HF       +               +++    L   +  N G V   +
Sbjct: 34  ---GVLLLLSSIHFQCRRLDRSA----------HFSTLAIKQNPLLAEAYSNLGNVYKER 80

Query: 166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225
             L+           L          ++           A   ++ + ++       +  
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 226 IASNDYK-----GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
           + +              + + ++  PN       +  V    G+   AI +FEK  ++DP
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYA 339
             +        +LK    + +        LS+ P+   V   L  V +E+     A+   
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQ-GLVHSYLQFSK 398
            ++I +       Y    N L        A   +  A  L P        L +   +   
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

Query: 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALA 457
           ++EA+   R+A++  P+ A A   +  V      G+ ++A   Y+ A+R+ P +  A   
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMHYKEAIRISPTFADAYSN 378

Query: 458 LAEL 461
           +   
Sbjct: 379 MGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 51/388 (13%), Positives = 105/388 (27%), Gaps = 42/388 (10%)

Query: 43  AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
              L++L    F+ R   R+ H    A+                                
Sbjct: 33  TGVLLLLSSIHFQCRRLDRSAHFSTLAI-------------------------------- 60

Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162
                 +    +A  +  LG       +++      R+             +       A
Sbjct: 61  ------KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114

Query: 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL--DSSRWLHRYV 220
              E                    +    +         +       +    +  +    
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
                 A  +    +  F + +   PN +   + +  V       D A+  + +  S+ P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYA 339
                    A +   +             + + P  P+ +  L + L E+     A    
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK 398
             ++R+   H        N+       E AV  +R A E+ P+   ++  L     Q  K
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

Query: 399 VKEALYAAREAMKAMPQSAKALKLVGDV 426
           ++EAL   +EA++  P  A A   +G+ 
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 7/235 (2%)

Query: 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190
           ++ I ++         +  ++        A+  +++ +   P F++A   L  +    + 
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH 250
                A             L  +  +     A            ++ +   ++  P+   
Sbjct: 219 FDRAVAAYLR------ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL 310
               +A      G   EA   +     + P     ++  A + + + +  +  +L    L
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332

Query: 311 SIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364
            + P        L SVL ++   + AL + +++IRI       Y   GN L  M+
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 7e-11
 Identities = 37/266 (13%), Positives = 83/266 (31%), Gaps = 4/266 (1%)

Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
            +E+A  +   G  + A  +  ++   +P     +   + +        + +      + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 312 IDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
            +P   E +  L  +++ + +        +     +       +     L         +
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAA--REAMKAMPQSAKALKLVGDVHAS 429
               +                 L  +  +     A   +A++  P  A A   +G V  +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF-N 180

Query: 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLH 488
                  A   +E A+ L+P +L A + L  +         AV+   R L        +H
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240

Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
             LA V+    ++  A+  Y  A+ L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL 266

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 4e-09
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 7/191 (3%)

Query: 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYRNSRHNRGAVACYKEC 167
           +    + +          A+       S + N  +    +A +Y        A+  Y+  
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263

Query: 168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA 227
           +   P F +A   LA        +              P               A     
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKRE 317

Query: 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287
             + +  + L+ + L+ FP        +A V    GK  EA++++++   I P       
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 288 EYAMLLKVKCD 298
                LK   D
Sbjct: 378 NMGNTLKEMQD 388

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 21/280 (7%)

Query: 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278
           + E    +   D    + LF   +Q+ P ++     +    A   +   AI    +   +
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----------------RPEVFVA 322
            P   T +   A+    +    +  +++ D L   P+                       
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 323 LSVLWERKDERGALSYAEKSIRI--DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380
           L  L               ++R+             G L       + AV  F  A  +R
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 381 PDLRSYQGLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK 439
           P+       + +     ++ +EA+ A R A++  P   ++   +G     N     +A +
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI-NLGAHREAVE 261

Query: 440 FYESALRLEPGYLGAALALAELHVIEGRN-GDAVSLLERY 478
            +  AL ++    G       +          A+S+L + 
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 5/126 (3%)

Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG 450
           + L   ++++AL    EA+KA P+ A       ++      G  E+A +    +++L P 
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC--IDGDFERADEQLMQSIKLFPE 62

Query: 451 YLGAALALAELHVIEGRNGDAVSLLERY--LKDWADDSLHVKLAQVFAATNMLQEALSHY 508
           YL  A  L  L        D          L +  + +  +    +   +   ++     
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 509 EAALRL 514
                L
Sbjct: 123 LQIEEL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
           + +  ++    +  LEL  E ++  P +  +     ++  I G  + A     +   + P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV--FVALSVLWERKDERGALSY 338
             +    +   L+K        ++       +  +       V+ ++    +D       
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 339 AEKSIRID 346
           A +   + 
Sbjct: 122 ALQIEELR 129

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322
           G+  +A+    +     P   +    +  LL +  D+ +  + +   + + P        
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 323 LSVLWERKDERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELR 380
           L  L +    R   +    + ++   +      ++  NL +  +  E         +ELR
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129

Query: 381 PDLRSYQGLVHSYLQFS 397
            +    +G + +   FS
Sbjct: 130 QE----KGFLANDTSFS 142

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 9/216 (4%)

Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326
           ++     +   +        D      +V      L  L   +L  D            L
Sbjct: 4   QSAQYLRQAEVLKA---DMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL 60

Query: 327 WER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-L 383
           W    K++   L    K+     R      +   L  +       +        +     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443
                L     + +     +     +          L  +GD+     +   +A+ +Y  
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIAR-YRNQTSQAESYYRH 177

Query: 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479
           A +L P        LA L   +G +   +    R +
Sbjct: 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 28/256 (10%), Positives = 62/256 (24%), Gaps = 10/256 (3%)

Query: 163 CYKECLRHCPFFIEAITALAELG-ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221
            Y++ L     +        +L     K+ I+          +A      +   +   + 
Sbjct: 39  LYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQG------QAKNRANPNRSEVQANLS 92

Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
                AS  Y   L+    +            ++  +          +       S    
Sbjct: 93  LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ 152

Query: 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW-ERKDERGALSYAE 340
                     + + +   S+          + PS  + +  L++L   + D    + Y  
Sbjct: 153 HCLV--HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210

Query: 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVK 400
           +SI +              L         V    G  +       + G V+      K+ 
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLS 270

Query: 401 EALYAAREAMKAMPQS 416
                  E  K +   
Sbjct: 271 PLREKLEEQFKELLFQ 286

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 8/238 (3%)

Query: 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND--EAILNFE 273
            H   E     ++   K  L      L+  P +         + + + + +    +    
Sbjct: 74  QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133

Query: 274 KVRSIDPYIM-TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE 332
           +    D      +     +  +     ++       L++ + S    +   S L  +   
Sbjct: 134 RFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-- 191

Query: 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVH 391
                 +    R+ E  +   +            + +   +      R + L   +  V 
Sbjct: 192 -HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVE 250

Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449
                    E+    +E           + L+           ++  +++ +   ++P
Sbjct: 251 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDP 307

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 26/292 (8%), Positives = 74/292 (25%), Gaps = 21/292 (7%)

Query: 239 AELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----------YMDE 288
            E  Q+          + +       ++  +    ++   +P   T          +++ 
Sbjct: 19  LEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET 78

Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW---ERKDERGALSYAEKSIRI 345
                +           +   L ++P     +     L       +    L    + +  
Sbjct: 79  EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138

Query: 346 DERHIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEAL 403
           DER+       +     +   P   +            +  S+        Q     ++ 
Sbjct: 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198

Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
              R     + +  + ++     +A      +++  FY   L      L       E   
Sbjct: 199 PQGRLPENVLLKELELVQ-----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253

Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRL 514
           +     ++   L+    +     L  + L +        +E L ++     +
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 16/172 (9%), Positives = 43/172 (25%), Gaps = 3/172 (1%)

Query: 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274
               Y       A+      L     L+ R  +N       + +   +    ++      
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203

Query: 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERG 334
             ++    +  +           D S        L   +P               + E  
Sbjct: 204 PENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPLFRCELSV-EKSTVLQSELE 260

Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386
           +    ++    ++  +   I+    L  +   +  +  F   + + P   +Y
Sbjct: 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 17/194 (8%), Positives = 49/194 (25%), Gaps = 10/194 (5%)

Query: 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206
                + +      +A     +        +    +           L  Q   +    P
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS----------CLLPQLHPQPDSGP 199

Query: 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
              L  +  L      Q    ++        +   L      +       +   ++    
Sbjct: 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSEL 259

Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326
           E+    +++   + + +  +      L       +  +    L ++DP R      L   
Sbjct: 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319

Query: 327 WERKDERGALSYAE 340
           +  ++    + YA+
Sbjct: 320 FLLENSVLKMEYAD 333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (113), Expect = 8e-07
 Identities = 27/236 (11%), Positives = 71/236 (30%), Gaps = 11/236 (4%)

Query: 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295
           ++ A           +L E   +   +G    A  +F +  +I P +    +   + L  
Sbjct: 24  QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83

Query: 296 KCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYI 354
             ++    +    +L +DP+     +     L+    ++ A        + D       +
Sbjct: 84  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM- 413
                   +   +A  +  +  ++   +   +  +       S+         +A     
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203

Query: 414 --PQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG----YLGAALALAELH 462
                ++    +G  + S   G  + A   ++ A+         +  A L L+ L 
Sbjct: 204 LAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 31/320 (9%), Positives = 76/320 (23%), Gaps = 23/320 (7%)

Query: 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-----ILLEMAKVDAIIGKN 265
           D+       + AQ  I   +      L    L+  P             + +V    G+ 
Sbjct: 8   DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 67

Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
             ++   ++   +      +      L++          L            +      +
Sbjct: 68  TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW------ETQEKAFQLI 121

Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385
             +  ++     +  +                    S     ++    +  Q L   ++ 
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181

Query: 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445
                      S++                 + A K+           +  A  +     
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-QMTGDKAAAANWLRHTA 240

Query: 446 RLEPGYLGAAL----ALAELHVIEGRNGDAVSLLERYLKDWADDSLH-------VKLAQV 494
           + E             +A   ++ G    A  +LE   ++     L        + L Q+
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300

Query: 495 FAATNMLQEALSHYEAALRL 514
           +       +A      AL+L
Sbjct: 301 YWQAGRKSDAQRVLLDALKL 320

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 18/107 (16%), Positives = 31/107 (28%)

Query: 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415
           KGN  LS+   + A+  +  A +L P          +        +  Y        +  
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462
                           +  E+AK+ YE  L+ E         L  + 
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 7/164 (4%)

Query: 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414
           +GN L   ++   A   +  A    P +   Y      YL+  + ++AL   R A++   
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 415 QSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473
           QS KA   +G           ++A    + A  L               +   +     S
Sbjct: 70  QSVKAHFFLGQCQL--EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127

Query: 474 LLERYLKDWADDS---LHVKLAQVFAATNMLQEALSHYEAALRL 514
           + ER +   ++       +  A+        Q     +E    +
Sbjct: 128 IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.74
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.51
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.89
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.87
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.48
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.39
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.27
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.3
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.61
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	86.18
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	84.44

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-42  Score=320.43  Aligned_cols=382  Identities=15%  Similarity=0.206  Sum_probs=340.7

Q ss_pred             HHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHH
Q 010276           47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA  126 (514)
Q Consensus        47 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  126 (514)
                      +.+|..+++.|+|++|++.|+++++.+|                               +++.+++.+|.++...|++++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p-------------------------------~~~~~~~~la~~~~~~~~~~~   51 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEP-------------------------------DNTGVLLLLSSIHFQCRRLDR   51 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------------CCHHHHHHHHHHHHHcCCHHH
Confidence            4689999999999999999999999987                               556678889999999999999


Q ss_pred             HHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCC
Q 010276          127 AIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA  205 (514)
Q Consensus       127 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  205 (514)
                      |+..++++ ...|.++.++..+|.++...|++++|+..+..+.+.+|.........                        
T Consensus        52 A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------------------  107 (388)
T d1w3ba_          52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL------------------------  107 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccc------------------------
Confidence            99999995 44589999999999999999999999999999999999888777554                        


Q ss_pred             CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q 010276          206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY  285 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  285 (514)
                                      +......+....+...........+.........+......+....+...+.+.+...|.+..+
T Consensus       108 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (388)
T d1w3ba_         108 ----------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA  171 (388)
T ss_dssp             ----------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ----------------cccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHH
Confidence                            4455566777777777777777788888888888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC
Q 010276          286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK  364 (514)
Q Consensus       286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (514)
                      +..+|..+...|++++|...+++++..+|+++.++..+|.++.. |++++|+..++++....|..+..+..+|.++...|
T Consensus       172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  251 (388)
T d1w3ba_         172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999988887 89999999999999999988888999999999999


Q ss_pred             ChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276          365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      ++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++...|.++..+..+|.++... |++++|+..|++
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~  330 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRK  330 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC-CCHHHHHHHHHH
Confidence            9999999999999999987 78889999999999999999999999999999999999999999988 999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276          444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM  500 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~  500 (514)
                      +++.+|+++.++..+|.++...|++++|+..|+++++++|++. ++.++|.+|.++||
T Consensus       331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999875 88999999988886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-40  Score=306.46  Aligned_cols=384  Identities=18%  Similarity=0.156  Sum_probs=353.8

Q ss_pred             hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276            4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS   83 (514)
Q Consensus         4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   83 (514)
                      +++..+..+..|+|+.|+.....++...+        ..+.+++.+|.+++..|++++|+..|+++++.+|         
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------   64 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEP--------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---------   64 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------
Confidence            45678889999999999999998887432        3456899999999999999999999999999987         


Q ss_pred             hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHH
Q 010276           84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVA  162 (514)
Q Consensus        84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~  162 (514)
                                            +..+++..+|.++...|++++|+..+.... ..+.........+......+....+..
T Consensus        65 ----------------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (388)
T d1w3ba_          65 ----------------------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred             ----------------------CCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence                                  456678889999999999999999999853 347788888888888889999999988


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHH
Q 010276          163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL  242 (514)
Q Consensus       163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  242 (514)
                      .........+.........                                        +......+....+...+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_         123 AYVSALQYNPDLYCVRSDL----------------------------------------GNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHCTTCTHHHHHH----------------------------------------HHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccc----------------------------------------cccccccchhhhhHHHHHHhh
Confidence            8888887777666555443                                        556667788999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHH
Q 010276          243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA  322 (514)
Q Consensus       243 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  322 (514)
                      ...|+++.++..+|.++...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|..+..+..
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  242 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHH
Q 010276          323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK  400 (514)
Q Consensus       323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  400 (514)
                      +|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.. ..+..++.++...|+++
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence            9999888 999999999999999999999999999999999999999999999999999988 78999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      +|+..++++++.+|+++.+++.+|.++... |++++|+..|+++++++|+++.++.++|.++.++|+
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998 999999999999999999999999999999999886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-30  Score=230.55  Aligned_cols=271  Identities=16%  Similarity=0.122  Sum_probs=213.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      .+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ  377 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  377 (514)
                      ++++|++.+++++...|.................                  ..........+...+.+.+|+..|.+++
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG------------------LGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcc------------------cccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999998887543322211110000                  0001111122334456777888888888


Q ss_pred             hhcCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276          378 ELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA  454 (514)
Q Consensus       378 ~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  454 (514)
                      ..+|+.   .++..+|.++...|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.+
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccc-ccchhHHHHHHHHHHHhhccHHH
Confidence            887764   45777888888888888888888888888888888888888888887 88888888888888888888888


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHhccHHHHHHH
Q 010276          455 ALALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEALSH  507 (514)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~  507 (514)
                      ++.+|.++...|++++|+..|++++++.|++            .+|..++.++..+|+.+.+...
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888888888888888888887764            2556677777777776555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-28  Score=220.23  Aligned_cols=275  Identities=14%  Similarity=0.031  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHH
Q 010276          141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYV  220 (514)
Q Consensus       141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (514)
                      ....+..|..+...|++++|+..|+++++.+|++..++..+                                       
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l---------------------------------------   59 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---------------------------------------   59 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH---------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------------------------------------
Confidence            34457899999999999999999999999999999998776                                       


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276          221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS  300 (514)
Q Consensus       221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  300 (514)
                       |.++...|++++|+..++++++.+|+++..+..+|.++...|++++|++.+++++...|...............     
T Consensus        60 -g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  133 (323)
T d1fcha_          60 -GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-----  133 (323)
T ss_dssp             -HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred             -HHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhh-----
Confidence             88899999999999999999999999999999999999999999999999999999999865432211111000     


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccC--chhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276          301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQE  378 (514)
Q Consensus       301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  378 (514)
                                   ..........+.....+.+.+|...+.+++..+|..  +.++..+|.++...|++++|+..|++++.
T Consensus       134 -------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  200 (323)
T d1fcha_         134 -------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  200 (323)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc
Confidence                         000011111222333367788999999999998875  45678899999999999999999999999


Q ss_pred             hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH----
Q 010276          379 LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG----  453 (514)
Q Consensus       379 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----  453 (514)
                      ..|++ .+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++++|++..    
T Consensus       201 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         201 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------
T ss_pred             cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            99998 88999999999999999999999999999999999999999999998 9999999999999999888754    


Q ss_pred             -------HHHHHHHHHHHcCChhHHHHH
Q 010276          454 -------AALALAELHVIEGRNGDAVSL  474 (514)
Q Consensus       454 -------~~~~la~~~~~~g~~~~A~~~  474 (514)
                             +|..++.++...|+.+.+...
T Consensus       280 ~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         280 GGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   445567777777777655443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=199.41  Aligned_cols=239  Identities=12%  Similarity=0.082  Sum_probs=209.3

Q ss_pred             HHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-hhHHHHHHHHHhhcCCCChHHH
Q 010276          242 LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVF  320 (514)
Q Consensus       242 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~  320 (514)
                      +..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...|. +++|+..+++++..+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            344677788999999999999999999999999999999999999999999998874 8999999999999999999999


Q ss_pred             HHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCC
Q 010276          321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK  398 (514)
Q Consensus       321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  398 (514)
                      ..+|.++.. |++++|+..+.++++.+|++..+|..+|.++...|++++|+..++++++++|.+ .+|..+|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            999998888 999999999999999999999999999999999999999999999999999988 889999999887776


Q ss_pred             ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHH--cCCh
Q 010276          399 ------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVI--EGRN  468 (514)
Q Consensus       399 ------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~--~g~~  468 (514)
                            +++|+..+.++++.+|++..+|..++.++..  ...+++...+++++++.|+.  +.++..++.++..  .++.
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~  273 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC  273 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh--cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCH
Confidence                  6789999999999999999999999988765  44688889999998887764  4456667777654  3677


Q ss_pred             hHHHHHHHHHHhhC
Q 010276          469 GDAVSLLERYLKDW  482 (514)
Q Consensus       469 ~~A~~~~~~~~~~~  482 (514)
                      +.+...++++++..
T Consensus       274 ~~~~~~~~ka~~l~  287 (315)
T d2h6fa1         274 DNKEDILNKALELC  287 (315)
T ss_dssp             SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888877653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-24  Score=190.15  Aligned_cols=235  Identities=11%  Similarity=0.034  Sum_probs=201.9

Q ss_pred             CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      +|.........+.++...+.+++|+..++++++.+|++..+|..+|.++...|. +++|+..++++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            445455555678889999999999999999999999999999999999999874 8999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC---
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR---  365 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  365 (514)
                      |.++...|++++|+..+.++++.+|++..+|..+|.++.. |++++|+..++++++++|.+..+|..+|.++...+.   
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999999999999999999999888 999999999999999999999999999999888776   


Q ss_pred             ---hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhc-CCChHHHH
Q 010276          366 ---PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--AKALKLVGDVHASN-ASGREKAK  438 (514)
Q Consensus       366 ---~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~-~~~~~~A~  438 (514)
                         +++|+..+.++++.+|++ .+|..++.++... ..+++...++++++..|+.  +.++..++.++... .+..+.+.
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               578999999999999998 7788888876554 4688899999998888764  55556666665432 14455566


Q ss_pred             HHHHHHHh
Q 010276          439 KFYESALR  446 (514)
Q Consensus       439 ~~~~~a~~  446 (514)
                      ..+.+++.
T Consensus       278 ~~~~ka~~  285 (315)
T d2h6fa1         278 DILNKALE  285 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.5e-26  Score=204.78  Aligned_cols=280  Identities=8%  Similarity=-0.043  Sum_probs=236.4

Q ss_pred             HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcC
Q 010276          151 YRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASND  230 (514)
Q Consensus       151 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (514)
                      ....+..++|+.+++++++.+|++..+|.....+....                              ...+..+...|+
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l------------------------------~~~~~~~~~~~~   88 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHL------------------------------ETEKSPEESAAL   88 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------------------------HTTSCHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH------------------------------hhhcchHHHHHH
Confidence            33444558999999999999999999987664442111                              111445667788


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhCChhHHHHHHH
Q 010276          231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYM-DEYAMLLKVKCDYSKLSKLVH  307 (514)
Q Consensus       231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~  307 (514)
                      +.+|+.+++++++.+|+++.++..+|.++...++  +++|+..++++++.+|.+..++ ...+.++...+.+++|+..++
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~  168 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence            9999999999999999999999999999888775  7899999999999999998876 467788888999999999999


Q ss_pred             HHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HH
Q 010276          308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS  385 (514)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~  385 (514)
                      +++..+|.+..+|..+|.++.. |++++|...+.+++...|.....+    ..+...+..+++...+.+++...|.. ..
T Consensus       169 ~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~  244 (334)
T d1dcea1         169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFR  244 (334)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhH
Confidence            9999999999999999999888 999999888888888887765443    33455677888999999999888887 67


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +..++.++...|++.+|+..+.+++..+|.+..++..+|.++... |++++|+.+|+++++++|.+...|..|+..+...
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence            778888888899999999999999999999999999999999988 9999999999999999998888888888877653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=5.6e-25  Score=198.59  Aligned_cols=268  Identities=10%  Similarity=-0.011  Sum_probs=238.3

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-
Q 010276          230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG----------KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-  298 (514)
Q Consensus       230 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  298 (514)
                      ..++|+.++++++..+|++..+|..++.++...+          ++++|+..++++++.+|++..+|..+|.++...++ 
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            3589999999999999999999988777766544          47899999999999999999999999999988775 


Q ss_pred             -hhHHHHHHHHHhhcCCCChHHHH-HHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276          299 -YSKLSKLVHDLLSIDPSRPEVFV-ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG  375 (514)
Q Consensus       299 -~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  375 (514)
                       +++|+..+.+++..+|.+...+. ..|.++.. +.+++|+..+++++..+|.+..+|..+|.++...|++++|+..+++
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             78999999999999999988865 56677766 9999999999999999999999999999999999999999999998


Q ss_pred             hHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHH
Q 010276          376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA  455 (514)
Q Consensus       376 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  455 (514)
                      ++...|...   .....+...+..+++...+.+++...|.+...+..+|.++... +++.+|+..+.+++..+|.+..++
T Consensus       204 ~~~~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~  279 (334)
T d1dcea1         204 PENVLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTI  279 (334)
T ss_dssp             CHHHHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHhHHHHH---HHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH-hhHHHHHHHHHHHHhhCchHHHHH
Confidence            888877652   2333456678888999999999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccH
Q 010276          456 LALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNML  501 (514)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~  501 (514)
                      ..+|.++...|++++|+++|+++++++|... .|..++..+.-...+
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~  326 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV  326 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence            9999999999999999999999999999875 777888877754433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.7e-21  Score=168.91  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=150.9

Q ss_pred             cCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHH
Q 010276          229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK  304 (514)
Q Consensus       229 ~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  304 (514)
                      .+.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            455667777777776433    3456888889999999999999999999999999988888888888888888888888


Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276          305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL  383 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (514)
                      .|++++..+|+++.++..+|.++.. |++++|+..++++++.+|.+......++..+...+..+.+...........+..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            8888888888888888888887776 888888888888888888877777777777666666555555544444444333


Q ss_pred             HHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          384 RSYQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       384 ~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ..+. +...+.    ..+..+.+...+.......|....+++.+|.++... |++++|+..|++++..+|++
T Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTT
T ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCC
Confidence            2221 111111    112233344444444444455555666666666665 66666666666666666654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.2e-21  Score=165.84  Aligned_cols=204  Identities=13%  Similarity=0.007  Sum_probs=158.8

Q ss_pred             CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276          138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH  217 (514)
Q Consensus       138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (514)
                      +....+++.+|.+|...|++++|+..|+++++.+|+++.++..+                                    
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~l------------------------------------   77 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL------------------------------------   77 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhh------------------------------------
Confidence            45677888999999999999999999999999999988888766                                    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                          |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+......++......+
T Consensus        78 ----g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          78 ----GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             ----HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ----chHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence                8888899999999999999999999999999999999999999999999999999999998888888887777777


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA  372 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  372 (514)
                      ..+.+...........+..+.. . +...+..     +....+...+.......|....+++.+|.++...|++++|+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  231 (259)
T d1xnfa_         154 EKQAKEVLKQHFEKSDKEQWGW-N-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL  231 (259)
T ss_dssp             HHHHHHHHHHHHHHSCCCSTHH-H-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHhhccchhhhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7666666655555554444321 1 1111111     3344555555556666677777777888888888888888888


Q ss_pred             HHHhHhhcCCh
Q 010276          373 FRGAQELRPDL  383 (514)
Q Consensus       373 ~~~~~~~~~~~  383 (514)
                      |++++..+|++
T Consensus       232 ~~~al~~~p~~  242 (259)
T d1xnfa_         232 FKLAVANNVHN  242 (259)
T ss_dssp             HHHHHTTCCTT
T ss_pred             HHHHHHcCCCC
Confidence            88888888876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.6e-19  Score=164.52  Aligned_cols=274  Identities=13%  Similarity=0.015  Sum_probs=197.6

Q ss_pred             ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhH
Q 010276          139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR  218 (514)
Q Consensus       139 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (514)
                      ..++.....|.++...|++++|+..|++++...|.+......                                   ..+
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~-----------------------------------~a~   54 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI-----------------------------------VAT   54 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH-----------------------------------HHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHH-----------------------------------HHH
Confidence            456677888999999999999999999999999875433221                                   123


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC--------CHH
Q 010276          219 YVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--------IMT  284 (514)
Q Consensus       219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~  284 (514)
                      ..+|.++...|++++|+..+++++...|..      ...+..++.++...|++..|...+.+++...+.        ...
T Consensus        55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~  134 (366)
T d1hz4a_          55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  134 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence            455889999999999999999998754322      456778889999999999999999988865321        134


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-----hHHHHHHHHHHhh-cChhHHHHHHHHHHHhccc-------Cch
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRIDER-------HIP  351 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-------~~~  351 (514)
                      ....+|.++...|+++.+...+.++....+..     ...+...+..+.. +++.++...+.++....+.       ...
T Consensus       135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  214 (366)
T d1hz4a_         135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  214 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            56678888888999999988888888765543     2334444544444 7777777777777665332       223


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHH
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQSAKAL  420 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~  420 (514)
                      .+...+.++...|++++|...+++++...|.+     ..+..+|.++...|++++|...+++++..      .|....++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            45667777778888888888888877766543     23566777778888888888887777643      24445667


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276          421 KLVGDVHASNASGREKAKKFYESALRLE  448 (514)
Q Consensus       421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~  448 (514)
                      ..+|.++... |++++|+..+++++++.
T Consensus       295 ~~la~~~~~~-g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         295 LLLNQLYWQA-GRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCHHHHHHHHHHHHHHh
Confidence            7777777777 77777777777777653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.7e-19  Score=164.41  Aligned_cols=269  Identities=13%  Similarity=-0.005  Sum_probs=193.9

Q ss_pred             HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HH
Q 010276          216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MT  284 (514)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~  284 (514)
                      .....+|.+++..|++++|+..+++++...|++     ..++..+|.++...|++++|+..|+++++..|..      ..
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            344567888888899999999999988888876     3467778888889999999999998888764432      34


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHhhcCCC-----C---hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC-----c
Q 010276          285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS-----R---PEVFVALSVLWER-KDERGALSYAEKSIRIDERH-----I  350 (514)
Q Consensus       285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~  350 (514)
                      ++..++.++...|++..+...+.+++...+.     .   ......+|.++.. |+++.+...+.+++...+..     .
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            6677788888888888888888887764221     1   2344556666655 88888888888877765443     2


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HH
Q 010276          351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AK  418 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~  418 (514)
                      ..+...+..+...+++.++...+.++....+..        ..+..++.++...|++++|...+++++...|.+    ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            345566777777888888888877776654321        235666777778888888888888777765543    45


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          419 ALKLVGDVHASNASGREKAKKFYESALRL------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      .+..+|.++... |++++|...+++++..      .|....++..+|.++...|++++|++.+++++++.+..
T Consensus       253 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         253 QWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            566778888877 8888888888877743      33445577778888888888888888888887776555

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=7.1e-16  Score=136.23  Aligned_cols=234  Identities=11%  Similarity=0.009  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276          231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL  310 (514)
Q Consensus       231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  310 (514)
                      .+.+..+|++++...|.++.+|...+..+...++...                    ..+......+..++|..+|++++
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~a~~i~~ral   91 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA--------------------EKGDMNNAKLFSDEAANIYERAI   91 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------HTSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHH--------------------HHHHHhhcccchHHHHHHHHHHH
Confidence            4456667777777777777777766665543322100                    00000111222344445555555


Q ss_pred             hc-CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch-hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHH
Q 010276          311 SI-DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSY  386 (514)
Q Consensus       311 ~~-~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~  386 (514)
                      .. .|.++..|...+.+... |+++.|...|++++...|.+.. +|...+......|+++.|...|+++++..|.. ..+
T Consensus        92 ~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1          92 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence            42 44444445544444444 5555555555555555554432 44555555555555555555555555555554 444


Q ss_pred             HHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh----HHHHHHHHH
Q 010276          387 QGLVHSY-LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL----GAALALAEL  461 (514)
Q Consensus       387 ~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~  461 (514)
                      ...+... ...|+.+.|..+|++++..+|+++..|...+..+... |+++.|...|+++++..|.++    ..|......
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~-g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f  250 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            4444432 2345566666666666666666666666666666665 666666666666666554332    245555555


Q ss_pred             HHHcCChhHHHHHHHHHHhhCCCc
Q 010276          462 HVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       462 ~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ....|+.+.+..+++++.+..|+.
T Consensus       251 E~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         251 ESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHHCccc
Confidence            556666666666666666665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.6e-16  Score=138.15  Aligned_cols=184  Identities=11%  Similarity=0.022  Sum_probs=166.0

Q ss_pred             cChhHHHHHHHHHHHh-cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRI-DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAA  406 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~  406 (514)
                      +..++|...|+++++. .|.+...|...+.++...|+++.|...|++++...|.+  .+|...+....+.|+++.|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4457889999999975 78888899999999999999999999999999999876  57899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-
Q 010276          407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-  485 (514)
Q Consensus       407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  485 (514)
                      ++++...|.+...+...+.......|+.+.|...|++++...|+++..|..++..+...|+++.|..+|+++++..|.+ 
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999888765544899999999999999999999999999999999999999999999999987643 


Q ss_pred             ----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276          486 ----SLHVKLAQVFAATNMLQEALSHYEAALR  513 (514)
Q Consensus       486 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~  513 (514)
                          .+|......-...|+.+.+.++++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                3777888888889999999999998754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-18  Score=161.10  Aligned_cols=228  Identities=11%  Similarity=-0.028  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc
Q 010276          233 GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI  312 (514)
Q Consensus       233 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  312 (514)
                      +|.++|++++...|+.++++..+|.++...|++.+|   |++++..+|+........+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999876   8999999987766543333222  22356677788877764


Q ss_pred             C--CCChHHHHH-HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHH
Q 010276          313 D--PSRPEVFVA-LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQG  388 (514)
Q Consensus       313 ~--~~~~~~~~~-l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  388 (514)
                      .  ++....... .+.+... +.|+.++..+.+++..+|.+...+..+|..+...|++++|+..+++++..+|. .++..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~  157 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-HCLVH  157 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH-HHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-HHHHH
Confidence            3  333333222 2333333 78889999999999999999999999999999999999999999999877653 67889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      +|.++...|++++|+.+|++++.++|+++..++.+|.++... |+..+|+.+|.+++..+|..+.++.+|+.++.+..+
T Consensus       158 LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~-~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK-GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT-TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999998 999999999999999999999999999998876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.9e-16  Score=115.24  Aligned_cols=110  Identities=13%  Similarity=0.104  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC  297 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (514)
                      +...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|.++.++..+|.++...|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276          298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLW  327 (514)
Q Consensus       298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  327 (514)
                      ++++|+..|+++++.+|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999998888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-16  Score=125.92  Aligned_cols=130  Identities=18%  Similarity=0.028  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 010276          353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS  432 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  432 (514)
                      ++..|..+...|++++|+..|+++  ..|+..+|+++|.+|..+|++++|+..|+++++++|+++.+++++|.++..+ |
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~-g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-E   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh-c
Confidence            346688899999999999999875  2344478899999999999999999999999999999999999999999998 9


Q ss_pred             ChHHHHHHHHHHHhhCCCC----------------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          433 GREKAKKFYESALRLEPGY----------------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       433 ~~~~A~~~~~~a~~~~~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ++++|+..|++++...|.+                .++++++|.++...|++++|++.++++++..|++
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999998765543                3678899999999999999999999999998875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.9e-16  Score=115.95  Aligned_cols=106  Identities=20%  Similarity=0.113  Sum_probs=61.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR  467 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  467 (514)
                      ..|..++..|++++|+..|+++++.+|+++.++..+|.++... |++++|+..+.++++++|+++.+++.+|.++..+|+
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc-ccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            3455555555555555555555555555555555555555555 555556666666555555555555556666666666


Q ss_pred             hhHHHHHHHHHHhhCCCch-HHHHHHHH
Q 010276          468 NGDAVSLLERYLKDWADDS-LHVKLAQV  494 (514)
Q Consensus       468 ~~~A~~~~~~~~~~~~~~~-~~~~l~~~  494 (514)
                      +++|+..|+++++..|++. ++..++.+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            6666666666655555553 44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-17  Score=156.35  Aligned_cols=226  Identities=10%  Similarity=0.003  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhc
Q 010276          267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRID  346 (514)
Q Consensus       267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~  346 (514)
                      +|+++|++++++.|+.++++..+|.++...|++++|   |++++..+|+........+.+. ...+..+++.+++..+..
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k~~   79 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-NHAFKNQITTLQGQAKNR   79 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcccc
Confidence            789999999999999999999999999999999876   8899998887666544333332 233567777787777544


Q ss_pred             cc--Cchh-HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276          347 ER--HIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL  422 (514)
Q Consensus       347 ~~--~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  422 (514)
                      ..  .... ....+.+....+.|+.|+..+.+++..+|++ ..+..+|..+...|++++|...+++++..+|  ..++..
T Consensus        80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~  157 (497)
T d1ya0a1          80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVH  157 (497)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHH
Confidence            22  2221 2234566667788999999999999998887 7899999999999999999999999988776  468889


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhc
Q 010276          423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATN  499 (514)
Q Consensus       423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g  499 (514)
                      +|.++... |++++|+.+|++|++++|+++.+++.||.++...|+..+|+.+|.+++...|... ++.+|+.++.+..
T Consensus       158 LG~l~~~~-~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         158 LGDIARYR-NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc-ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999998 9999999999999999999999999999999999999999999999999987764 8999998887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=123.63  Aligned_cols=125  Identities=13%  Similarity=0.018  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +++.|..+...|++++|+..|++   +.|.++.+++++|.++..+ |++++|+..|+++++++|+++.++.++|.++.++
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~-g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            34568999999999999999986   4567799999999999999 9999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCc-----------------hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          466 GRNGDAVSLLERYLKDWADD-----------------SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      |++++|+..|++++...|.+                 ++++++|.++..+|++++|++.|++++++
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999865432                 47889999999999999999999999864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-15  Score=118.93  Aligned_cols=107  Identities=15%  Similarity=0.083  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG  466 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  466 (514)
                      ...|..+++.|++++|+..|+++++.+|+++.+|..+|.++... |++++|+..|+++++++|+++.++..+|.++..+|
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-cccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            34455555555555555555555555555555555555555555 55555555555555555555555555555555555


Q ss_pred             ChhHHHHHHHHHHhhCCCch-HHHHHHHH
Q 010276          467 RNGDAVSLLERYLKDWADDS-LHVKLAQV  494 (514)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~  494 (514)
                      ++++|+..+++++.+.|++. ++..++.+
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            55555555555555555543 44444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=9.2e-16  Score=134.12  Aligned_cols=160  Identities=13%  Similarity=-0.021  Sum_probs=82.1

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------hHHHHH
Q 010276          255 MAKVDAIIGKNDEAILNFEKVRSIDP------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVA  322 (514)
Q Consensus       255 la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~  322 (514)
                      .|.+|...|++++|++.|.+++++.+      ....++..+|.+|...|++++|+..+++++.+.+..      ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            37778888888888888888877521      123456666777777777777777666666543322      223334


Q ss_pred             HHHHHhh--cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH--------HH
Q 010276          323 LSVLWER--KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR--------SY  386 (514)
Q Consensus       323 l~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~  386 (514)
                      +|.++..  |++++|+..|++++.+.+..      ..++..+|.++...|++++|+..|++++...|...        .+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            4443322  44555555555544432221      12234444444455555555555544444433320        12


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276          387 QGLVHSYLQFSKVKEALYAAREAMKAMP  414 (514)
Q Consensus       387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p  414 (514)
                      ...+.++...|+++.|...++++.+.+|
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3334444444444444444444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.7e-15  Score=132.41  Aligned_cols=199  Identities=11%  Similarity=0.059  Sum_probs=123.0

Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC------CChHHHHHHHHHHhh-cChhHHH
Q 010276          264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KDERGAL  336 (514)
Q Consensus       264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~~~~A~  336 (514)
                      ++++|.++|.++              |.+|...|++++|+..|.++++..+      .....+..+|.+|.. |++++|+
T Consensus        32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            456666665554              6778888888888888888876521      123456667777766 7777777


Q ss_pred             HHHHHHHHhcccC------chhHHHHHHHHHh-cCChHHHHHHHHHhHhhcCC---h----HHHHHHHHHHHhcCCHHHH
Q 010276          337 SYAEKSIRIDERH------IPGYIMKGNLLLS-MKRPEAAVIAFRGAQELRPD---L----RSYQGLVHSYLQFSKVKEA  402 (514)
Q Consensus       337 ~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~A  402 (514)
                      ..+++++.+.+..      ..++..+|.++.. .|++++|+..|++++++.+.   .    .++..+|.++..+|++++|
T Consensus        98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_          98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            7777777765544      3345666666643 57777777777777665322   1    3466677777777777777


Q ss_pred             HHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH-----HHHHHHHHHH--cCCh
Q 010276          403 LYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA-----ALALAELHVI--EGRN  468 (514)
Q Consensus       403 ~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~~--~g~~  468 (514)
                      +..|++++...|.++       ..+...|.++... |+++.|...++++++.+|..+..     ...+..++..  .+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~  256 (290)
T d1qqea_         178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (290)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence            777777777665542       3445666666666 77777777777777776654332     2334334333  2345


Q ss_pred             hHHHHHHHH
Q 010276          469 GDAVSLLER  477 (514)
Q Consensus       469 ~~A~~~~~~  477 (514)
                      ++|+..|++
T Consensus       257 ~eai~~y~~  265 (290)
T d1qqea_         257 SEHCKEFDN  265 (290)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            666666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-15  Score=118.51  Aligned_cols=122  Identities=9%  Similarity=0.034  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276          217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK  296 (514)
Q Consensus       217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (514)
                      .+..+|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            34566999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---cChhHHHHH
Q 010276          297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGALSY  338 (514)
Q Consensus       297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A~~~  338 (514)
                      |++++|+..+++++...|+++.++..++.+...   +.+++|+..
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999988887766433   445555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=126.29  Aligned_cols=113  Identities=19%  Similarity=0.129  Sum_probs=77.6

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      ...+...|..++..|+|++|+..|++++..+|++ .+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3445566777777777777777777777777776 567777777777777777777777777777777777777777777


Q ss_pred             hcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276          429 SNASGREKAKKFYESALRLEPGYLGAALALAELHV  463 (514)
Q Consensus       429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  463 (514)
                      .+ |++++|+..|+++++++|++...+...+....
T Consensus        84 ~l-~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          84 EM-ESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            76 77777777777777766655443333333333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.4e-14  Score=111.32  Aligned_cols=118  Identities=17%  Similarity=0.151  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ  415 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  415 (514)
                      .+...|..++..|++++|+..|++++...|..                .++.++|.+|.+.|++++|+..+++++.++|+
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~   94 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN   94 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence            44566777777777777777777777765532                13556777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhH
Q 010276          416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD  470 (514)
Q Consensus       416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  470 (514)
                      ++.+++.+|.++... |++++|+..|+++++++|+++.+...++.+....++..+
T Consensus        95 ~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            777777777777776 777777777777777777777777777776655554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=1.6e-14  Score=105.34  Aligned_cols=93  Identities=24%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      ++.+|..+.+.|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh-hhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            455666666666666666666666666666666666666666666 6666666666666666666666666666666666


Q ss_pred             CChhHHHHHHHHHH
Q 010276          466 GRNGDAVSLLERYL  479 (514)
Q Consensus       466 g~~~~A~~~~~~~~  479 (514)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            66666666666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.57  E-value=3.2e-12  Score=109.84  Aligned_cols=225  Identities=16%  Similarity=0.091  Sum_probs=159.8

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276          248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVAL  323 (514)
Q Consensus       248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l  323 (514)
                      ||.+++.+|..+...+++++|+++|+++.+.  .+..+++.+|.++..    ..++..|...++.+..  +.++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence            4677788888888888888888888888654  467778888888776    5577778777777665  3466777777


Q ss_pred             HHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHH
Q 010276          324 SVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL  394 (514)
Q Consensus       324 ~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  394 (514)
                      |.++..     .+.+.|...++.+....+  ..+...++..+..    ......|...+.+.... .....+..+|..+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-NDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-cccchhhhhhhhhc
Confidence            776654     556678888888776544  3444555555543    34456666666665432 22366777888877


Q ss_pred             h----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--
Q 010276          395 Q----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI--  464 (514)
Q Consensus       395 ~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--  464 (514)
                      .    ..+...+..+++.+.+  +.++.+.+.+|.++..    . .++++|+.+|+++.+.  +++.+.+.||.+|..  
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~-~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccc-cchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence            5    4566777777777664  4578888888888876    3 5788888889888776  457888888888875  


Q ss_pred             --cCChhHHHHHHHHHHhhCCC
Q 010276          465 --EGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       465 --~g~~~~A~~~~~~~~~~~~~  484 (514)
                        ..++++|.++|+++....+.
T Consensus       229 g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCccCHHHHHHHHHHHHHCcCH
Confidence              34788899999888877644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.8e-13  Score=108.21  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      .+...|..++..|++++|+..|++++...|..               ..++.++|.+|... |++++|+..+++++.++|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~-~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhh-hhcccccchhhhhhhccc
Confidence            45678999999999999999999999987754               35677899999998 999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHH
Q 010276          450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~  505 (514)
                      +++.+++.+|.++..+|++++|+..|+++++++|++. +...++.+....+...+..
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999885 8888898888777665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.7e-14  Score=117.53  Aligned_cols=102  Identities=12%  Similarity=0.055  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276          251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-  329 (514)
Q Consensus       251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  329 (514)
                      .+...|..++..|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++.. 
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            3344455555555555555555555555555555555555555555555555555555555555555555555554444 


Q ss_pred             cChhHHHHHHHHHHHhcccCchh
Q 010276          330 KDERGALSYAEKSIRIDERHIPG  352 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~  352 (514)
                      |++++|+..|++++.++|.+...
T Consensus        86 ~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          86 ESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhCcccHHH
Confidence            55555555555555555444333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=5.4e-14  Score=102.49  Aligned_cols=94  Identities=19%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHH
Q 010276          418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA  496 (514)
Q Consensus       418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~  496 (514)
                      ..++.+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++. ++..+|.+|.
T Consensus        17 ~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          17 ENPMEEGLSMLKL-ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             SCHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            3457889999998 9999999999999999999999999999999999999999999999999999985 9999999999


Q ss_pred             HhccHHHHHHHHHHHh
Q 010276          497 ATNMLQEALSHYEAAL  512 (514)
Q Consensus       497 ~~g~~~~A~~~~~~al  512 (514)
                      ..|++++|++.+++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999986

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.52  E-value=1.3e-13  Score=106.96  Aligned_cols=129  Identities=11%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA  431 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  431 (514)
                      .+...|..++..|+|.+|+..|++++...|....+.            +.........+     ...++.++|.+|..+ 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~------------~~~~~~~~~~~-----~~~~~~Nla~~~~~l-   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD------------DQILLDKKKNI-----EISCNLNLATCYNKN-   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC------------CHHHHHHHHHH-----HHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh------------hHHHHHhhhhH-----HHHHHhhHHHHHHHh-
Confidence            345567788888888888888888887654321000            00000000000     023445566666665 


Q ss_pred             CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHh
Q 010276          432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAAT  498 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~  498 (514)
                      |++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|++. +...++.+..++
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666553 555555554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-14  Score=104.15  Aligned_cols=111  Identities=9%  Similarity=-0.076  Sum_probs=79.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHH
Q 010276          388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN--ASGREKAKKFYESALRLEPGY--LGAALALAELHV  463 (514)
Q Consensus       388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~  463 (514)
                      .++..+...+++++|.+.|++++..+|+++.+++++|.++...  .+++++|+..|++++..+|..  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4566677777788888888888888888888888888877653  134456788888877776654  347777888888


Q ss_pred             HcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHh
Q 010276          464 IEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAAT  498 (514)
Q Consensus       464 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~  498 (514)
                      ..|++++|+.+|+++++++|++. +...++.+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            88888888888888888888764 665556555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.52  E-value=2e-13  Score=107.90  Aligned_cols=118  Identities=18%  Similarity=0.153  Sum_probs=81.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAM  413 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  413 (514)
                      ...+...|..++..|+|++|+..|++++...|..                ..+.++|.+|..+|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3445667888888888888888888887654331                124566777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276          414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN  468 (514)
Q Consensus       414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  468 (514)
                      |+++.+++.+|.++... |++++|+..|+++++++|+++.+...++.+....+.+
T Consensus        95 p~~~~a~~~~~~~~~~l-~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            77777777777777776 7777777777777777777776666666666555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-13  Score=102.74  Aligned_cols=106  Identities=14%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH-------HHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-------AALAL  458 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~l  458 (514)
                      +..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|... |++++|+..++++++++|+++.       ++..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            556788888888888888888888888888888888888888888 8888888888888887776643       55567


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276          459 AELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA  492 (514)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  492 (514)
                      |.++...+++++|+.+|++++...|+.+....+.
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~  119 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            7777788888888888888888877765544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.51  E-value=7.3e-12  Score=107.57  Aligned_cols=222  Identities=14%  Similarity=0.118  Sum_probs=179.8

Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMK  356 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      +|.+++.+|..+...+++++|+++|+++.+.  +++.+++.+|.++..     .++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            5789999999999999999999999999764  688999999999886     5778999999987754  456777888


Q ss_pred             HHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          357 GNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       357 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      |.++..    .++.+.|...++++....+. .+...++..+..    ......|...+.+...  +.+...+..+|.++.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence            888765    56789999999999876443 455566666654    4467777777777654  566888999999998


Q ss_pred             hc---CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH----
Q 010276          429 SN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----  497 (514)
Q Consensus       429 ~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----  497 (514)
                      ..   ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.. ++.+.+.||.+|..    
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSS
T ss_pred             cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc-CHHHHHHHHHHHHcCCCC
Confidence            72   1556788888888775  4678999999999987    678999999999998874 45689999999986    


Q ss_pred             hccHHHHHHHHHHHhc
Q 010276          498 TNMLQEALSHYEAALR  513 (514)
Q Consensus       498 ~g~~~~A~~~~~~al~  513 (514)
                      ..++++|.++|++|.+
T Consensus       231 ~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         231 TRNEKQAIENFKKGCK  246 (265)
T ss_dssp             SCCSTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            4489999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=4.8e-13  Score=103.66  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE  465 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  465 (514)
                      +...|..++..|++.+|+..|++++...|...              ...+.........+.     ..++.++|.+|.++
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~--------------~~~~~~~~~~~~~~~-----~~~~~Nla~~~~~l   80 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--------------EWDDQILLDKKKNIE-----ISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT--------------TCCCHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh--------------hhhhHHHHHhhhhHH-----HHHHhhHHHHHHHh
Confidence            55678888888888888888888887655421              111111111222221     24677899999999


Q ss_pred             CChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          466 GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       466 g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                      |++++|+..++++++++|++. +++.+|.++..+|++++|+..|++++++
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999884 9999999999999999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=4e-13  Score=106.45  Aligned_cols=136  Identities=15%  Similarity=0.096  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 010276          352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA  431 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  431 (514)
                      .+...|..++..|++++|+..|+++++..+...                 +...........|....++.++|.++... 
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~-   90 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLKM-   90 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh-----------------hhhhhHHHHHhChhhHHHHHHHHHHHHhh-
Confidence            356678888888999999988888876543221                 11111222344566677888888888888 


Q ss_pred             CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHH
Q 010276          432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEAL  505 (514)
Q Consensus       432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~  505 (514)
                      |++++|+..+.++++++|+++.+++.+|.++..+|++++|+..|++++++.|++. +...++.+........++.
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888875 7777788777766665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=2.8e-13  Score=107.36  Aligned_cols=133  Identities=15%  Similarity=0.083  Sum_probs=106.4

Q ss_pred             HHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC
Q 010276          320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS  397 (514)
Q Consensus       320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  397 (514)
                      ....|..+.. |++.+|+..|.+++...+.....                  ..........|.. ..+.++|.++.+.|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA------------------AEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------------------SCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh------------------hhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            4455665555 99999999999998764432111                  1112223445555 67889999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276          398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA  471 (514)
Q Consensus       398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (514)
                      ++++|+..++++++++|+++.+++.+|.++... |++++|+..|+++++++|+++.+...++.+........++
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l-~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 9999999999999999999999999999888776655554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=1.3e-12  Score=103.19  Aligned_cols=118  Identities=12%  Similarity=0.030  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276          385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEP  449 (514)
Q Consensus       385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  449 (514)
                      .+...|..++..|++.+|+..|++++...|..               ..++.++|.||..+ |++++|+..++++++++|
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l-~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh-hhcccchhhhhhhhhccc
Confidence            46778999999999999999999999765432               35577899999999 999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHH
Q 010276          450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQE  503 (514)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~  503 (514)
                      +++.+++.+|.++..+|++++|+..|+++++++|++. +...++.+....+...+
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999985 88888888877776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1.2e-13  Score=105.74  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=71.1

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---------CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276          394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---------ASGREKAKKFYESALRLEPGYLGAALALAELHVI  464 (514)
Q Consensus       394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  464 (514)
                      .+.+.+++|+..|+++++.+|+++.+++.+|.++...         .+.+++|+..|+++++++|+++.+++++|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3445566666666666666666666666666665532         0344667777777777777777777777777766


Q ss_pred             cCC-----------hhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHH
Q 010276          465 EGR-----------NGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEA  504 (514)
Q Consensus       465 ~g~-----------~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A  504 (514)
                      +|+           +++|.+.|+++++++|++. .+..++.+....+.+.++
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            543           5778888888888888775 555566665444444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=101.02  Aligned_cols=104  Identities=13%  Similarity=0.030  Sum_probs=50.2

Q ss_pred             HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhc
Q 010276          357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS---KVKEALYAAREAMKAMPQS--AKALKLVGDVHASN  430 (514)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~  430 (514)
                      +..+...+++++|.+.|++++..+|++ .+++++|.++...+   ++++|+..+++++..+|.+  ..+++++|.+|...
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            334444445555555555555555544 44555555544322   2233555555555444432  23455555555554


Q ss_pred             CCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276          431 ASGREKAKKFYESALRLEPGYLGAALALAEL  461 (514)
Q Consensus       431 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  461 (514)
                       |++++|+.+|+++++++|++..+...++.+
T Consensus        86 -g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          86 -KEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             -TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence             555555555555555555555544444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=2.3e-13  Score=104.15  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREA  409 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (514)
                      +.+++|+..|+++++++|+++.++..+|.++...+++..+.+                       ..+.+++|+..|+++
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-----------------------~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-----------------------AKQMIQEAITKFEEA   67 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-----------------------HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-----------------------HHHHHHHHHHHHHHH
Confidence            445555666666666666655555555555554444333322                       123456788888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCC-----------ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276          410 MKAMPQSAKALKLVGDVHASNAS-----------GREKAKKFYESALRLEPGYLGAALALAELHVIEGRN  468 (514)
Q Consensus       410 ~~~~p~~~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  468 (514)
                      ++++|+++.+++++|.+|... |           .+++|..+|+++++++|++..++..|+.+....+.+
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~-g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSF-AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHc-ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888765 4           368899999999999999998888888776443333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2e-12  Score=96.67  Aligned_cols=105  Identities=19%  Similarity=0.272  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcCh
Q 010276          253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE  332 (514)
Q Consensus       253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (514)
                      ..+|..++..|+|++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++++|.++..+..++.       
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~-------   80 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-------   80 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH-------
Confidence            3455555555555555555555555555555555555555555555555555555555555444443333332       


Q ss_pred             hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276          333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL  383 (514)
Q Consensus       333 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (514)
                                         ++..+|.++...+++++|+..|++++..+|+.
T Consensus        81 -------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          81 -------------------AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             -------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence                               22345555666666666666666666655554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.18  E-value=4.7e-11  Score=92.71  Aligned_cols=94  Identities=17%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC-------
Q 010276          390 VHSYLQFSKVKEALYAAREAMKAMPQS------------AKALKLVGDVHASNASGREKAKKFYESALRLEPG-------  450 (514)
Q Consensus       390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------  450 (514)
                      |..++..|+|++|+..|++++++.|+.            ..++.++|.+|..+ |++++|+..+++++++.|.       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l-g~~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc-CccchhhHhhhhhhhccccccccccc
Confidence            444444444444444444444444332            24556666666666 6666666666666654321       


Q ss_pred             ----ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276          451 ----YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD  484 (514)
Q Consensus       451 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  484 (514)
                          ...+++++|.++..+|++++|+..|++++++.|+
T Consensus        95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                1235677788888888888888888887777553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-10  Score=81.41  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276          386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQ-------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL  458 (514)
Q Consensus       386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  458 (514)
                      .+.+|.++.+.|++++|+..|+++++..|.       ...++.++|.++... |++++|+..|+++++++|+++.++.++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~-g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc-CChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            344444455555555555555554443322       134555555555555 555555555555555555555555555


Q ss_pred             HHHH
Q 010276          459 AELH  462 (514)
Q Consensus       459 a~~~  462 (514)
                      +.+.
T Consensus        87 ~~~~   90 (95)
T d1tjca_          87 KYFE   90 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.14  E-value=1.1e-10  Score=90.66  Aligned_cols=92  Identities=12%  Similarity=0.037  Sum_probs=80.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhCCCCh------------HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----
Q 010276          422 LVGDVHASNASGREKAKKFYESALRLEPGYL------------GAALALAELHVIEGRNGDAVSLLERYLKDWADD----  485 (514)
Q Consensus       422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----  485 (514)
                      ..|..+... |++++|+..|++++++.|+.+            .++.++|.+|..+|++++|+..+++++++.|..    
T Consensus        14 ~~g~~~~~~-g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          14 SDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            347788888 999999999999999887653            478899999999999999999999999875421    


Q ss_pred             --------hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276          486 --------SLHVKLAQVFAATNMLQEALSHYEAALRL  514 (514)
Q Consensus       486 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~l  514 (514)
                              .+++++|.+|..+|++++|+..|++++++
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    37889999999999999999999999864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.3e-10  Score=78.35  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276          218 RYVEAQCCIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA  290 (514)
Q Consensus       218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  290 (514)
                      .+.+|.+++..|+|.+|+..|+++++..|.       ...++..+|.++.+.|++++|+..++++++++|+++.++.+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            355677777777777777777777765433       2567777777777777777777777777777777777777666


Q ss_pred             HHHH
Q 010276          291 MLLK  294 (514)
Q Consensus       291 ~~~~  294 (514)
                      .+..
T Consensus        88 ~~~~   91 (95)
T d1tjca_          88 YFEY   91 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.05  E-value=2.5e-10  Score=96.06  Aligned_cols=133  Identities=11%  Similarity=0.018  Sum_probs=105.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      +...+..|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++++|++...+..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999988887777666


Q ss_pred             HHHHHHHHhhc-CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH
Q 010276          302 LSKLVHDLLSI-DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI  354 (514)
Q Consensus       302 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~  354 (514)
                      +.....+.... .|.....+...+..... |++++|...++++.+..|..+..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            55443332222 33334444455555555 8999999999999998888766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.02  E-value=3.3e-10  Score=95.29  Aligned_cols=126  Identities=12%  Similarity=0.011  Sum_probs=89.4

Q ss_pred             HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276          359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA  437 (514)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A  437 (514)
                      -.+..|++++|+..++++++.+|++ ..+..++.++...|++++|+..++++++.+|++...+..++.++... +..+++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~-~~~~~a   83 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-QARKDF   83 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-cccHHH
Confidence            3456778888888888888888877 77778888888888888888888888888888877777777776665 555544


Q ss_pred             HHHHHHHHh-hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276          438 KKFYESALR-LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD  485 (514)
Q Consensus       438 ~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  485 (514)
                      ...+.+... ..|.....+...+.++...|++++|.+.++++.+..|+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            433332222 234444556667777788888888888888888877764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=9.8e-09  Score=80.70  Aligned_cols=116  Identities=12%  Similarity=-0.071  Sum_probs=73.6

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276          350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA  428 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  428 (514)
                      ...+...|......|++++|+..|.+++.+.+... ....       .+.+     .......+.+....++..++.++.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777888888888888888887766431 0000       0000     011112222334566667777777


Q ss_pred             hcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          429 SNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      .. |++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++
T Consensus        79 ~~-g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          79 AC-GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HC-CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            76 77777777777777777777777777777777777777777777776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=2.4e-08  Score=78.42  Aligned_cols=121  Identities=11%  Similarity=-0.008  Sum_probs=66.1

Q ss_pred             CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      .+...+......|......|++++|...|.+++...++.......       .+.+     .......+.+....++..+
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~l   73 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAK   73 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHH
Confidence            445566677788999999999999999999999987655211000       0000     0011111122223444445


Q ss_pred             HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHH
Q 010276          290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKS  342 (514)
Q Consensus       290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~  342 (514)
                      +.++...|++++|+..+++++..+|.+...|..++.++.. |++.+|+..|+++
T Consensus        74 a~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5555555555555555555555555555555555554444 5555555555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=0.00043  Score=62.89  Aligned_cols=396  Identities=9%  Similarity=-0.034  Sum_probs=181.8

Q ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhcccc-CCCCcccccccCChhH---HHHHHHHHHH
Q 010276           44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNR-SSSPNSFNVSAINENE---VKYKIASCHF  119 (514)
Q Consensus        44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~---~~~~la~~~~  119 (514)
                      ...|..+...+++|++.++....... +.+|--|  +...-...-..+.. ......|....|+.+.   ++......+.
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~   83 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELA   83 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHH--HHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence            45677788888888888766665553 3344221  11111111111111 1112233334444333   3334445566


Q ss_pred             hcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276          120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP  199 (514)
Q Consensus       120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  199 (514)
                      +.+++++.+..+   +..|.+.......+.+....|+..+|......+....+..+.....+.......+          
T Consensus        84 ~~~~w~~~~~~~---~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~----------  150 (450)
T d1qsaa1          84 RREDWRGLLAFS---PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG----------  150 (450)
T ss_dssp             HTTCHHHHHHHC---CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT----------
T ss_pred             hccCHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC----------
Confidence            777877755544   3457778888888899999999999999888887665544444333322211100          


Q ss_pred             CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHH------------------------HHhCCCcHH--HHH
Q 010276          200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAEL------------------------LQRFPNNIH--ILL  253 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------------~~~~p~~~~--~~~  253 (514)
                               ...+..+   ..+....+..|++..|......+                        ....|.++.  ...
T Consensus       151 ---------~lt~~~~---~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~  218 (450)
T d1qsaa1         151 ---------KQDPLAY---LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMA  218 (450)
T ss_dssp             ---------CSCHHHH---HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHH
T ss_pred             ---------CCCHHHH---HHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHH
Confidence                     0112222   22344555556666555544321                        001111111  011


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276          254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER  329 (514)
Q Consensus       254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (514)
                      ..+..-....+.+.|...+.......+.....+.......    ...+..+.+...+........+.......++..+..
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~  298 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT  298 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHc
Confidence            1122222223444444444444333333322221111111    112333444444433333322222222222323323


Q ss_pred             cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010276          330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREA  409 (514)
Q Consensus       330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  409 (514)
                      +++..+...+..+.......+...+.+|..+...|+.++|...|..+.. .+++  |-.++....... +.-.    ...
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~f--YG~LAa~~Lg~~-~~~~----~~~  370 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRGF--YPMVAAQRIGEE-YELK----IDK  370 (450)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSH--HHHHHHHHTTCC-CCCC----CCC
T ss_pred             CChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCCh--HHHHHHHHcCCC-CCCC----cCC
Confidence            4444444444332221122233334444444445554444444444432 1221  111111111000 0000    000


Q ss_pred             HhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276          410 MKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY  478 (514)
Q Consensus       410 ~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  478 (514)
                      ....+..   ...-...+..+... |....|...+..++..  .++.-...++.+..+.|.++.|+....++
T Consensus       371 ~~~~~~~~~~~~~~~~ra~~L~~~-g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         371 APQNVDSALTQGPEMARVRELMYW-NLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCSCCCCHHHHSHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCccHHHhhhcChHHHHHHHHHHc-CCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            0000000   11123456667777 9999999999888754  34667778899999999999999887765

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=0.00044  Score=62.83  Aligned_cols=378  Identities=11%  Similarity=-0.006  Sum_probs=199.7

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH---
Q 010276          107 ENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE---  183 (514)
Q Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~---  183 (514)
                      ....+|..+.-.+..|++.++......+...|--+  +...-.+....++..  ...+...++.+|+.+........   
T Consensus         5 ~~r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL~p--Yl~~~~l~~~~~~~~--~~~i~~Fl~~~p~~P~~~~lr~~~l~   80 (450)
T d1qsaa1           5 EQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYP--YLEYRQITDDLMNQP--AVTVTNFVRANPTLPPARTLQSRFVN   80 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHH--HHHHHHHHHTGGGCC--HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHhhhcCCCCHH--HHHHHHHHhccccCC--HHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            34567888999999999999999999985545433  222223322333222  23456777889998776432211   


Q ss_pred             hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH-----------
Q 010276          184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHIL-----------  252 (514)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------  252 (514)
                      .....++....+.....          .|.+.......+.+....|+.++|...+..+....+..+...           
T Consensus        81 ~L~~~~~w~~~~~~~~~----------~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~  150 (450)
T d1qsaa1          81 ELARREDWRGLLAFSPE----------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG  150 (450)
T ss_dssp             HHHHTTCHHHHHHHCCS----------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred             HHHhccCHHHHHHhccC----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Confidence            11222333333332211          122222333446667778888888887777765433332222           


Q ss_pred             -------HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276          253 -------LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV  325 (514)
Q Consensus       253 -------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  325 (514)
                             ..........|++..|......+   .++.......+..+.   .+.......    ....+.++.....+..
T Consensus       151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l---~~~~~~~~~a~~~l~---~~p~~~~~~----~~~~~~~~~~~~~~~~  220 (450)
T d1qsaa1         151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLA---NNPNTVLTF----ARTTGATDFTRQMAAV  220 (450)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHH---HCGGGHHHH----HHHSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHhhC---ChhHHHHHHHHHHHH---hChHhHHHH----HhcCCCChhhhHHHHH
Confidence                   22333344444444444333211   111111100011111   111111111    1112222222111111


Q ss_pred             HHhh---cChhHHHHHHHHHHHhcccCchhHH----HHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCC
Q 010276          326 LWER---KDERGALSYAEKSIRIDERHIPGYI----MKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK  398 (514)
Q Consensus       326 ~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  398 (514)
                      .+..   .+.+.|...+.......+.....+.    .++..+...+..+.+...+........+......++......++
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~  300 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGD  300 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCC
Confidence            1111   5666666666665554443333222    22223334455666666666655544444322222223445567


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---------------------------
Q 010276          399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY---------------------------  451 (514)
Q Consensus       399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------  451 (514)
                      +..+...+..+-......+...+.+|..+... |+.++|...|..+... ++.                           
T Consensus       301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~-G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~  378 (450)
T d1qsaa1         301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLER-GREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSA  378 (450)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred             hHHHHHHHHhcCcccccHHHHHHHHHHHHHHc-CChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence            77777766654333333466667777777777 7777777777776531 100                           


Q ss_pred             --hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276          452 --LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA  511 (514)
Q Consensus       452 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  511 (514)
                        ...-...+..+...|+...|...+..++... ++.-...++.+..+.|.++.|+....++
T Consensus       379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence              0123356778889999999999999887654 4456668899999999999999887665

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.39  E-value=2.7e-06  Score=62.91  Aligned_cols=111  Identities=18%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             ChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCChHHHHHHH
Q 010276          365 RPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFY  441 (514)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~  441 (514)
                      ++++|+.+|+++.+.. +..+...++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..-   ..++++|+.+|
T Consensus         8 d~~~A~~~~~kaa~~g-~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           8 DLKKAIQYYVKACELN-EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC-Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            5677777777776553 2234444443  3345677777777776653  4566777777776641   14567777777


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhC
Q 010276          442 ESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDW  482 (514)
Q Consensus       442 ~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  482 (514)
                      +++.+.  .++.+.+.||.+|..    ..++++|+.+|+++.+..
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777654  356667777777665    346677777777766654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=6e-06  Score=58.16  Aligned_cols=72  Identities=8%  Similarity=0.017  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276          384 RSYQGLVHSYLQFS---KVKEALYAAREAMKAMPQSA-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL  456 (514)
Q Consensus       384 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  456 (514)
                      .+.+..|+++.+..   +.++++.+++.++..+|.+. +.++.+|..|.+. |++++|..+++++++++|++..+..
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl-gdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHccCCCcHHHHH
Confidence            44455555554433   23345555555555554432 4555555555555 5555555555555555555544443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=4e-06  Score=59.07  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276          218 RYVEAQCCIAS---NDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY  289 (514)
Q Consensus       218 ~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  289 (514)
                      .|..|.++.+.   .+.++++.+++++++.+|.+ .+.++.+|..|++.|++++|..+++++++++|++..+....
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            34445555543   33456666676666666654 35666677777777777777777777777777666555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.9e-05  Score=58.20  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 010276          331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAA  406 (514)
Q Consensus       331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~  406 (514)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....++++|+..|+++.+.. +..+.+.+|.+|..    ..++++|+.+|
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            4556666666665442  3444444443  23345666666666655431 22455666666554    34566666666


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhC
Q 010276          407 REAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLE  448 (514)
Q Consensus       407 ~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~  448 (514)
                      +++.+.  .++.+.+.+|.+|..-   ..+..+|+.+|+++.+..
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            666543  3455666666666541   135566666666665543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.038  Score=46.80  Aligned_cols=234  Identities=11%  Similarity=0.034  Sum_probs=133.3

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      +.++...++++.|.+.+.+.     +++.+|......+....+..-+.-+ ...   ...+++-.......+...|.+++
T Consensus        47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHH
Confidence            44556667777777777655     4567777777777766655443211 111   11234445556677777888888


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHH-hccc-------CchhHHHHHHHHHhcCChHHHHHHH
Q 010276          302 LSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-IDER-------HIPGYIMKGNLLLSMKRPEAAVIAF  373 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~  373 (514)
                      .+.+++..+...+.+...+..++.++..-+.++-.+.+..... .++.       ....|-.+..+|.+.|+++.|+...
T Consensus       118 Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         118 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence            8888888877777777777777777776555555555544211 1111       1223445666777777777776554


Q ss_pred             HHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHhcCCChHHHHHHHHH
Q 010276          374 RGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL----------KLVGDVHASNASGREKAKKFYES  443 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----------~~l~~~~~~~~~~~~~A~~~~~~  443 (514)
                      -.-   .++.......-.++.+..+.+...+...-.+...|+...-+          ..+.....+. ++..-...+++.
T Consensus       198 i~~---~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~-~~l~li~p~Le~  273 (336)
T d1b89a_         198 MNH---PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV-KQLPLVKPYLRS  273 (336)
T ss_dssp             HHS---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT-TCTTTTHHHHHH
T ss_pred             HHc---chhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            321   12211223333445556666655555555555555432211          1122233333 555555566655


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCChhH
Q 010276          444 ALRLEPGYLGAALALAELHVIEGRNGD  470 (514)
Q Consensus       444 a~~~~~~~~~~~~~la~~~~~~g~~~~  470 (514)
                      ...  .++..+...++.+|...++++.
T Consensus       274 v~~--~n~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         274 VQN--HNNKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             HHT--TCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHH--cChHHHHHHHHHHHhCcchhHH
Confidence            443  2345677788888888888644

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.038  Score=46.78  Aligned_cols=258  Identities=12%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276          222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK  301 (514)
Q Consensus       222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (514)
                      |..+...|.|+.|..+|...        .-+..+..++...+++..|.+.+.+.     +++..|..+...+.......-
T Consensus        21 ~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~l   87 (336)
T d1b89a_          21 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL   87 (336)
T ss_dssp             --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHH
Confidence            78888999999999999754        12345567788899999999988766     467788888888877766544


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHh-h
Q 010276          302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE-L  379 (514)
Q Consensus       302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~  379 (514)
                      +.-+ .   .....+++-...+...+.. |.+++.+.+++..+...+.+...+..++.+|.+.+ .++-.+.++..-. .
T Consensus        88 a~i~-~---~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y  162 (336)
T d1b89a_          88 AQMC-G---LHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRV  162 (336)
T ss_dssp             HHHT-T---TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTS
T ss_pred             HHHH-H---HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccC
Confidence            3211 1   1112344544455555555 89999999999999888888888888999887754 4555555544211 1


Q ss_pred             cCC--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276          380 RPD--------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY  451 (514)
Q Consensus       380 ~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  451 (514)
                      ++.        ...|..+..+|.+.|++++|+..+-.    .|.+..-....-.++.+. .+.+..-+...-.++..|..
T Consensus       163 ~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~-~N~e~~~~~i~~yL~~~p~~  237 (336)
T d1b89a_         163 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDIITKV-ANVELYYRAIQFYLEFKPLL  237 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHHHHHC-SSTHHHHHHHHHHHHHCGGG
T ss_pred             CHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHHHHcc-CChHHHHHHHHHHHHcCHHH
Confidence            111        12366788888899999988765532    111111112222223333 34333333333333333322


Q ss_pred             hH----------HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHH
Q 010276          452 LG----------AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQE  503 (514)
Q Consensus       452 ~~----------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  503 (514)
                      ..          -...+.....+.++..-...+++...+.+ ...+...++.+|...++++.
T Consensus       238 i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         238 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC-hHHHHHHHHHHHhCcchhHH
Confidence            11          11234555677788888888887755433 33588999999999998644

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.29  Score=30.21  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276           39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY   72 (514)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   72 (514)
                      |-..+..+-..|+.+.+.|.|++||++++++...
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556777888999999999999999999998765

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.18  E-value=6  Score=30.57  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276          252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPY  281 (514)
Q Consensus       252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  281 (514)
                      +..+|.+.-+.++|++.+.+.+++++.+|.
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e   35 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAE   35 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence            344455555555555555555555555443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.44  E-value=7.5  Score=30.14  Aligned_cols=61  Identities=13%  Similarity=0.061  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHhCChhHHHHHHHHHhhc--CCC-ChHHHHHHHHHHhh--cChhHHHHHHHHH
Q 010276          282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--DPS-RPEVFVALSVLWER--KDERGALSYAEKS  342 (514)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~~~~l~~~~~~--~~~~~A~~~~~~~  342 (514)
                      ..+-+..+|.+..+.++|++...+.+++++.  +|. +.+-...+..+|..  |....+.+.+...
T Consensus         3 ~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~   68 (236)
T d1o9da_           3 AREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSI   68 (236)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344556666666667777766666666654  333 34444455555544  4445555555443