Citrus Sinensis ID: 010287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEccccccccccccccEEEEEcccccccEEEEEEEcccccccccccEEEccEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccccccccccccEEccccEEEEEEccccccccccccccccccccEEEccccEEEEEEEEEEEcccccccEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEEEccccccccccEEEEEEEEcccccEEEEEEcccEEEEEEccccccccccccEEEEEcccccccccccEEEEEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEEcccccccccccccccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEEcccccEEEEEEcccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccEEEEEEcccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEcccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEcccEEEEcccHEEEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccEEHHHHHHHHHHHHHcHHcccccccccccHHHHHHHcHcccEEcccccEEEEccEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEcccHHHHccccccccccccccccccccccccccccccccccccccccHHEHEHcccccccEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
mdngggsseaaaqpLEWKFSqvfgertageevqevDIISAIefdksgdhlatgdrggrvvlfertdtrdnggqrrdLEMMDYsmsrhpefryktefqshepefdylKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDwnvhpekaagngpifgshvsaipksymanggcgernfgcasndssfppggvsslrlpvvtsqetnLVAGCRRIYAHAHDyhinsisnnsdgetfisaDDLRINLWNleisnqsfnivdvkpanmedltevitsaefhpthcnmlayssskgsiRLIDMRQSALCDTHSKlfeeqeapgtrsFFTEIIASISDIKFARNGRHILSRDYMTLKLWDinmdsgpvatfqvhehlrpklcdlyendsifdkfecclsgdggrvatgsySNLFRVfgcsegsaesttleasknpmrrqvqtpsrpsrplgslsgvvrrvkgadnsaldangnafDFSMKLLHLawhpsensiacaasnslymyya
Flexible Loop (DISEMBL)
mdngggsseaaaqpleWKFSQVFGERTAGEEVQEVDIISAIefdksgdhlatgdrggrvvlfertdtrdnggqrrdleMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHpekaagngpifgSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFeeqeapgtrsFFTEIIASISdikfarngrhILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESttleasknpmrrqvqtpsrpsrplgslsGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Low Complexity Region (SEG)
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIklwkvqekkvkkvFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTpsrpsrplgslsgVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Disordered region (IsUnstruct)
***************EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLF***************************************EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA************SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE****PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC*************************************************DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY*
Disordered Region (DISOPRED)
****************WKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM************************************NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Disordered Region (DISEMBL)
**********AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE***************************PLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Disordered Region (DISPRO)
*************PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD******************SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV******************************************FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN*************************************GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.968	0.992	0.785	0.0
Q0E2P1	525	Serine/threonine protein	yes	no	0.962	0.940	0.787	0.0
A2X2K3	525	Serine/threonine protein	N/A	no	0.962	0.940	0.787	0.0
Q38821	513	Serine/threonine protein	no	no	0.988	0.988	0.757	0.0
Q5Z8Z7	581	Serine/threonine protein	no	no	0.982	0.867	0.757	0.0
Q12702	463	Protein phosphatase PP2A	yes	no	0.865	0.958	0.504	1e-136
Q5ZIY5	451	Serine/threonine-protein	yes	no	0.844	0.960	0.503	1e-135
Q6DIY3	447	Serine/threonine-protein	yes	no	0.853	0.979	0.498	1e-135
Q7ZX64	447	Serine/threonine-protein	N/A	no	0.853	0.979	0.490	1e-133
Q66LE6	453	Serine/threonine-protein	yes	no	0.844	0.955	0.503	1e-133

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/514 (78%), Positives = 449/514 (87%), Gaps = 17/514 (3%)

Query: 3   NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG  +  +  P  LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2   NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTDT+D+GG R+DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P           S  S IP   +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVV-TSQETNLVAGCRRIYAHAHDYHINSIS 239
            NG   ++     S D SFPPGG+ SLRLPVV TSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229

Query: 240 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 299
           N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289

Query: 300 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359
           SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349

Query: 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419
           YMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 350 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 409

Query: 420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 479
           LFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR  G+++   +ANG
Sbjct: 410 LFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANG 467

Query: 480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           NA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 468 NAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/499 (78%), Positives = 443/499 (88%), Gaps = 5/499 (1%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R 
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
           +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90  ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIK WKVQE+KVK++   N++  +++GNG    S  S+  ++ + NGGC E+ +   +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208

Query: 196 DSSFPPGGVSSLRLPVV-TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           D  FPPGG +SLRLPVV T Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           VATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+T
Sbjct: 389 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEAT 448

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEAS+NPMRRQV  P+RP+R L SL+  VRR  G +N  +DANGN++D S KLLHLAWH
Sbjct: 449 TLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWH 506

Query: 495 PSENSIACAASNSLYMYYA 513
           P+ENSIACAA+NSLYMYYA
Sbjct: 507 PTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/499 (78%), Positives = 443/499 (88%), Gaps = 5/499 (1%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R 
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
           +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90  ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIK WKVQE+KVK++   N++  +++GNG    S  S+  ++ + NGGC E+ +   +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208

Query: 196 DSSFPPGGVSSLRLPVV-TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           D  FPPGG +SLRLPVV T Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           VATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+T
Sbjct: 389 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEAT 448

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEAS+NPMRRQV  P+RP+R L SL+  VRR  G +N  +DANGN++D S KLLHLAWH
Sbjct: 449 TLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWH 506

Query: 495 PSENSIACAASNSLYMYYA 513
           P+ENSIACAA+NSLYMYYA
Sbjct: 507 PTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/516 (75%), Positives = 438/516 (84%), Gaps = 9/516 (1%)

Query: 3   NGGGSSEAAAQ----PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG    AA+     PLEW+FSQVFGER+AGEEVQEVDIISAIEFD SG+HLATGDRGGR
Sbjct: 2   NGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTDT ++ G RR+LE  DY + RHPEFRYKTEFQSH+PEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDTNNSSGTRRELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKI 120

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           RWCQ+AN AL+LLSTNDKTIK WKVQ+KK+KK+ D N  P +  GNG +  S  S I  S
Sbjct: 121 RWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNS 180

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV-TSQETNLVAGCRRIYAHAHDYHINS 237
            + NGG  E N     ND S P GG+SSLRLPVV TS E++ VA CRR+YAHAHDYHINS
Sbjct: 181 CLVNGGVSEVN-NSLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINS 239

Query: 238 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 297
           ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA MEDL+EVITSAEFHPTHCNML
Sbjct: 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNML 299

Query: 298 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357
           AYSSSKGSIRLID+RQSALCD+HSKLFEE E  G +SFFTEIIAS+SDIKFA+ GR++LS
Sbjct: 300 AYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLS 359

Query: 358 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 417
           RDYMTLKLWDINMD+GPVATFQVHE+L+PKLCDLYENDSIFDKFECC+SG+G R ATGSY
Sbjct: 360 RDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSY 419

Query: 418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 477
           SNLFRVFG + GS E+ TLEAS+NPMRR V  PSRPSR L S++ VV R  G+++  +D 
Sbjct: 420 SNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSR--GSESPGVDG 477

Query: 478 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           N NA D++ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 478 NTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/512 (75%), Positives = 434/512 (84%), Gaps = 8/512 (1%)

Query: 4   GGGSSEAAAQP-LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 62
            G SS     P +EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLF
Sbjct: 17  AGSSSAQQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 76

Query: 63  ERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ 122
           ERTD RDN   RR++E  D  ++RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWCQ
Sbjct: 77  ERTDARDNAS-RREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQ 135

Query: 123 SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182
           +AN++L LLSTNDKTIK WKVQEKKVK+V   N+             S  S+  +  + N
Sbjct: 136 TANNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSS--RGLLPN 193

Query: 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVT-SQETNLVAGCRRIYAHAHDYHINSISNN 241
           GGC +++    ++D  FPPGG  SLRLPVV  SQ+ NLVA CRR+YAHAHDYHINSIS N
Sbjct: 194 GGCSDKS-SFLNSDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTN 252

Query: 242 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 301
           SDGET+ISADDLRINLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHPTHCN LAYSS
Sbjct: 253 SDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSS 312

Query: 302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 361
           SKGSIRLID+RQSALCD HSK+FEE EAPG+RSFFTEIIASISDIKF+R+GR+ILSRDYM
Sbjct: 313 SKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYM 372

Query: 362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421
           TLKLWD+NMDSGPV+TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  VATGSY NLF
Sbjct: 373 TLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLF 432

Query: 422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 481
           RVFGC+ GS E+TTLEAS+NPMRRQ+  P+RP+R L SL+  VRR  G +N  +DANGN+
Sbjct: 433 RVFGCTPGSTEATTLEASRNPMRRQIVNPTRPTRTLTSLARGVRR--GGENQGVDANGNS 490

Query: 482 FDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           FDFS KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 491 FDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/503 (50%), Positives = 329/503 (65%), Gaps = 59/503 (11%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           +WKF+Q FG++   E++ E DIISA+EFD +GD+LATGD+GGRVVLFER  ++       
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFERNHSK------- 62

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
                     +  E+++ TEFQSHEPEFDYLKSLEIEEKINKIRWC+  N A +LLSTND
Sbjct: 63  ----------KGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTND 112

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIKLWK+ EK +K V + N+     + + P+ G                          
Sbjct: 113 KTIKLWKLYEKNLKVVAENNL---SDSFHSPMQG-------------------------- 143

Query: 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 255
               P    S LRLP +   +  + A  RR+YA+AH YHINSIS NSD ET+ISADDLRI
Sbjct: 144 ----PLTTPSQLRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRI 199

Query: 256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 315
           NLWNL IS+ SFNIVD+KP NME+LTEVITSAEFHP +CN L YSSSKG+I+L+D+RQSA
Sbjct: 200 NLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSA 259

Query: 316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 375
           LCD   KLFE+QE   ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+  PV
Sbjct: 260 LCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPV 319

Query: 376 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE---GSAE 432
            T  +H+ LR KLCDLYEND IFDKFEC  SGD   V +GSYSN F ++       G   
Sbjct: 320 KTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRG 379

Query: 433 STTLEASKNPMRRQV----QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 488
              L+A K   R +       P   +          +   G+ +  LD +    D++ K+
Sbjct: 380 QIVLQADKAAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDN--LDYNKKI 437

Query: 489 LHLAWHPSENSIACAASNSLYMY 511
           LH +WHP E+S+A AA+N+L+++
Sbjct: 438 LHASWHPFEDSVAIAATNNLFVF 460

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/497 (50%), Positives = 325/497 (65%), Gaps = 64/497 (12%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
            +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R     +    
Sbjct: 14  FQWCFSQVQG--AVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 71

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+A +LLSTN
Sbjct: 72  RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 119

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIKLWK+ E+  K+   +N+  E      P                            
Sbjct: 120 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 151

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
                    +++LR+P++   +  + A  RRI+A+AH YHINSIS NSD ET++SADDLR
Sbjct: 152 --------KITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLR 203

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR S
Sbjct: 204 INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSS 263

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ P
Sbjct: 264 ALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRP 323

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           V T+QVHE+LR KLC LYEND IFDKFECC +G  G + TGSY+N FR+F     +    
Sbjct: 324 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFD--RNTRRDI 381

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEAS     R+   P    +P    +G  R+         + N ++ DF+ K+LH AWH
Sbjct: 382 TLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDSLDFNKKILHTAWH 429

Query: 495 PSENSIACAASNSLYMY 511
           P EN IA AA+N+LY++
Sbjct: 430 PMENIIAVAATNNLYIF 446

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Gallus gallus (taxid: 9031)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/508 (49%), Positives = 330/508 (64%), Gaps = 70/508 (13%)

Query: 4   GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
           GGG+        +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+
Sbjct: 5   GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQ 56

Query: 64  RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
           R     +    R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW   
Sbjct: 57  REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104

Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
            N+A +LLSTNDKTIKLWK+ E+  K+V  +N+  +      P                 
Sbjct: 105 QNAAHFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147

Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 243
                               ++SLR+P++   +  + A  RRI+A+AH YHINSIS NSD
Sbjct: 148 -------------------RITSLRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSD 188

Query: 244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 303
            ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSK
Sbjct: 189 HETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSK 248

Query: 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 363
           G+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++
Sbjct: 249 GTIRLCDMRDSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSV 308

Query: 364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423
           K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+
Sbjct: 309 KVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRM 368

Query: 424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 483
           F     +    TLEAS     R+   P    +P    +G  R+         + N ++ D
Sbjct: 369 F--DRNTRRDITLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDSLD 414

Query: 484 FSMKLLHLAWHPSENSIACAASNSLYMY 511
           F+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 415 FNKKILHTAWHPTDNIIAVAATNNLYIF 442

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZX64|2ABD_XENLA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus laevis GN=ppp2r2d PE=1 SV=1

 Score =  476 bits (1226), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/508 (49%), Positives = 330/508 (64%), Gaps = 70/508 (13%)

Query: 4   GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
           GGG+        +W FSQV G     E+V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5   GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGELLATGDKGGRVVIFQ 56

Query: 64  RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
           R     +    R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW   
Sbjct: 57  REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104

Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
            N+A +LLSTNDKTIKLWK+ E+  K+V  +N+  +      P                 
Sbjct: 105 QNAANFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147

Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 243
                               ++SLR+P++   +  + A  RRI+A+AH YHINSIS NSD
Sbjct: 148 -------------------RITSLRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSD 188

Query: 244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 303
            +T++SADDLR+NLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HC+M  YSSSK
Sbjct: 189 HQTYLSADDLRVNLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCHMFVYSSSK 248

Query: 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 363
           G+IRL DMR +ALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++
Sbjct: 249 GTIRLCDMRDAALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSV 308

Query: 364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423
           K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+
Sbjct: 309 KVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFFRM 368

Query: 424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 483
           F     +    TLEAS     R+   P    +P    +G  R+         + N ++ D
Sbjct: 369 F--DRNTRRDITLEAS-----RESSKPRATLKPRKVCTGGKRKKD-------EINVDSLD 414

Query: 484 FSMKLLHLAWHPSENSIACAASNSLYMY 511
           F+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 415 FNKKILHTAWHPTDNIIAVAATNNLYIF 442

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus laevis (taxid: 8355)

>sp|Q66LE6|2ABD_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/497 (50%), Positives = 323/497 (64%), Gaps = 64/497 (12%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
            +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R     +    
Sbjct: 16  FQWCFSQVKG--AIDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 73

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+A +LLSTN
Sbjct: 74  RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 121

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIKLWK+ E+  K+   +N+  E      P                            
Sbjct: 122 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 153

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
                    +++LR+P++   +  + A  RRI+A+AH YHINSIS NSD ET++SADDLR
Sbjct: 154 --------RITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLR 205

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR S
Sbjct: 206 INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSS 265

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S P
Sbjct: 266 ALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRP 325

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           V T QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F     +    
Sbjct: 326 VETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD--RDTRRDV 383

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEAS     R+   P    +P    +G  RR    D  ++D    + DF+ K+LH AWH
Sbjct: 384 TLEAS-----RESSKPRASLKPRKVCTGGKRR---KDEISVD----SLDFNKKILHTAWH 431

Query: 495 PSENSIACAASNSLYMY 511
           P +N IA AA+N+LY++
Sbjct: 432 PVDNVIAVAATNNLYIF 448

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
224088860	521	predicted protein [Populus trichocarpa]	0.966	0.952	0.853	0.0
224142870	517	predicted protein [Populus trichocarpa]	0.990	0.982	0.826	0.0
356556686	514	PREDICTED: serine/threonine protein phos	0.966	0.964	0.842	0.0
356550460	514	PREDICTED: serine/threonine protein phos	0.990	0.988	0.821	0.0
11094369	515	Ser/Thr specific protein phosphatase 2A	0.992	0.988	0.804	0.0
225442335	512	PREDICTED: serine/threonine protein phos	0.966	0.968	0.849	0.0
224128562	512	predicted protein [Populus trichocarpa]	0.992	0.994	0.825	0.0
30685484	500	Protein phosphatase 2A, regulatory subun	0.968	0.994	0.787	0.0
147810182	507	hypothetical protein VITISV_029693 [Viti	0.982	0.994	0.791	0.0
297850168	506	ATB beta [Arabidopsis lyrata subsp. lyra	0.949	0.962	0.801	0.0

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/499 (85%), Positives = 458/499 (91%), Gaps = 3/499 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRGGRVVLFERTDTRD+GG R
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNR 85

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MD+ ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQSAN AL+LLSTN
Sbjct: 86  RDLERMDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTN 145

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ D NV P KAAGNGP+ G  +S   K Y ANGGC ++  G  S
Sbjct: 146 DKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKPLGL-S 204

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           ND SFPPGGVSSL LPV+TS ET+LV  CRRIYAHAHDYHINSISNNSDGETFISADDLR
Sbjct: 205 NDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDLR 264

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS+GSIRL+DMRQS
Sbjct: 265 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMRQS 324

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+ILSRDYMTLKLWDINMDSGP
Sbjct: 325 ALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGP 384

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           V+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC++GS E+T
Sbjct: 385 VSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTEAT 444

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEASKNPMRRQVQTPSRPSR LG+LS   RR  GAD S  D NGNAFDF+ KLLHLAWH
Sbjct: 445 TLEASKNPMRRQVQTPSRPSRSLGTLSRGFRR--GADTSGADTNGNAFDFTTKLLHLAWH 502

Query: 495 PSENSIACAASNSLYMYYA 513
           P+ENS+ACAASNSLYMYYA
Sbjct: 503 PTENSLACAASNSLYMYYA 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142870|ref|XP_002324758.1| predicted protein [Populus trichocarpa] gi|222866192|gb|EEF03323.1| predicted protein [Populus trichocarpa]

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/519 (82%), Positives = 460/519 (88%), Gaps = 11/519 (2%)

Query: 3   NGGGSSEAAAQP------LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG 56
           NGGGS EAA         LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRG
Sbjct: 2   NGGGSEEAAEAVAAAPVPLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRG 61

Query: 57  GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116
           GRVVLFERTD RD+GG RRDLE MD+ + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
Sbjct: 62  GRVVLFERTDKRDHGGNRRDLERMDFPIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121

Query: 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176
           KIRWCQ+AN AL+LLSTNDKTIK WKV EKKVKK+ D NV P KAAGNGP+ G  +    
Sbjct: 122 KIRWCQAANGALFLLSTNDKTIKFWKVHEKKVKKICDMNVDPAKAAGNGPVVGPSIPTSS 181

Query: 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV--TSQETNLVAGCRRIYAHAHDYH 234
           K Y ANGGC ++  G  SND SFP GGV SL LPVV  TS E +LV  CRRIYAHAHDYH
Sbjct: 182 KPYTANGGCLDKPLGL-SNDFSFPLGGVPSLHLPVVVLTSSEISLVPRCRRIYAHAHDYH 240

Query: 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 294
           INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC
Sbjct: 241 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 300

Query: 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 354
           N+LAYSSS+GSIRL+DMRQSALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+
Sbjct: 301 NILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRY 360

Query: 355 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414
           ILSRDYMTLKLWDINMDSGPV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVAT
Sbjct: 361 ILSRDYMTLKLWDINMDSGPVSTFQVHENLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 420

Query: 415 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA 474
           GSYSNLFRVFGCSEGS E+TTLEASKNPMR+QVQTPSRPSR LG+LS   RR  GAD S 
Sbjct: 421 GSYSNLFRVFGCSEGSTEATTLEASKNPMRKQVQTPSRPSRSLGTLSHGFRR--GADTSG 478

Query: 475 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           +D NGNAFDF+ KLLHLAWHP+ENS+ACAASNSLYMYYA
Sbjct: 479 VDTNGNAFDFTTKLLHLAWHPTENSLACAASNSLYMYYA 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556686|ref|XP_003546654.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/500 (84%), Positives = 457/500 (91%), Gaps = 4/500 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 18  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 77

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MDYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 78  RDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 137

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ + NV P K+ GNG I  S  S+  + Y+ NGG  +R +   S
Sbjct: 138 DKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDR-YNYIS 196

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           ND SFPPGG+ SLRLP+V+S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDLR
Sbjct: 197 NDFSFPPGGLPSLRLPMVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLR 256

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN LAYSSSKGSIRL+D+RQS
Sbjct: 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQS 316

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSRDYMTLKLWDINMDSGP
Sbjct: 317 ALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGP 376

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           VATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+T
Sbjct: 377 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEAT 436

Query: 435 TLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 493
           TLEASKNPMRRQV TPSRPSR LG S++ VVRR  GA+   +DANGN+FDF+ KLLHLAW
Sbjct: 437 TLEASKNPMRRQVPTPSRPSRSLGNSITRVVRR--GAEAPGVDANGNSFDFTTKLLHLAW 494

Query: 494 HPSENSIACAASNSLYMYYA 513
           HPSENSIACAA+NSLYMYYA
Sbjct: 495 HPSENSIACAAANSLYMYYA 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550460|ref|XP_003543605.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/516 (82%), Positives = 461/516 (89%), Gaps = 8/516 (1%)

Query: 3   NGGGSSEAAA----QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG    AA      PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2   NGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTDT+D+GG  RDLE +DYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           RWCQ AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P K+ GNG I  S  S+  + 
Sbjct: 122 RWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRP 181

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSI 238
           Y+ANGG  +R +   SND SFPPGG+ SLRLP+V+S ET+LVA CRR+YAHAHDYHINSI
Sbjct: 182 YLANGGSPDR-YNYISNDFSFPPGGIPSLRLPMVSSHETSLVARCRRVYAHAHDYHINSI 240

Query: 239 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 298
           SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN LA
Sbjct: 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLA 300

Query: 299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358
           YSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSR
Sbjct: 301 YSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSR 360

Query: 359 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 418
           DYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG R+ATGSYS
Sbjct: 361 DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYS 420

Query: 419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDA 477
           NLFRVFGC+ GSAE+TTLEASKNPMRR V TPSRPSR LG S++ VVRR  GA+   +DA
Sbjct: 421 NLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRR--GAETPGVDA 478

Query: 478 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           NGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 479 NGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia]

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/516 (80%), Positives = 463/516 (89%), Gaps = 7/516 (1%)

Query: 3   NGGG----SSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG     + E   QPLEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2   NGGDEVVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTD++D  G R DLE MDYS++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDSKDQHGSRSDLERMDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           +WCQ+AN A++LLSTNDKTIK WKVQEKKVKK+ D N+   KA GNG I  S  S+  K 
Sbjct: 122 KWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKP 181

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSI 238
           ++ANGG  ++++   SND SFPPGG+ SL+LP V S ET+L+A CRR+YAHAHDYHINSI
Sbjct: 182 HLANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVVSHETSLLARCRRVYAHAHDYHINSI 241

Query: 239 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 298
           SNNSDGETFISADDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHPTHCN LA
Sbjct: 242 SNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLA 301

Query: 299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358
           YSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKFA++GR+ILSR
Sbjct: 302 YSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILSR 361

Query: 359 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 418
           DYMTLKLWDINMDSGPVAT++VHEHLRP+LCDLYENDSIFDKFECCLSGDG RV+TGSYS
Sbjct: 362 DYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSYS 421

Query: 419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDA 477
           NLFRVFGC+ GS E+TTLEASKNPMRRQV TPSRPSR +G S++ VVRR  GA+N+++DA
Sbjct: 422 NLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSIGNSITRVVRR--GAENTSVDA 479

Query: 478 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           NGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 480 NGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442335|ref|XP_002280910.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/499 (84%), Positives = 456/499 (91%), Gaps = 3/499 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 17  LEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 76

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MDY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 77  RDLERMDYPI-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 135

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ D N+ P KA GNG +  S  S  PK Y+ANGG  +R++   S
Sbjct: 136 DKTIKFWKVQEKKVKKISDMNLDPSKAVGNGSVASSSNSTSPKPYLANGGSPDRSYSYLS 195

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           ND SFPPGG+ SLRLP V+S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDLR
Sbjct: 196 NDFSFPPGGIPSLRLPTVSSPETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLR 255

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL D+RQS
Sbjct: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLNDLRQS 315

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD+HSKLFEEQEAPG+RSFFTEIIASISDIKF+++GR ILSRDYMTLKLWDINMDSGP
Sbjct: 316 ALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSRDYMTLKLWDINMDSGP 375

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           V+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGCS GS E+T
Sbjct: 376 VSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGMRVATGSYSNLFRVFGCSPGSTEAT 435

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEASKNPMRRQVQTPSRPSR L S++ VVRR  GAD+  +DANGN+FDF+ KLLHLAWH
Sbjct: 436 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GADSPGVDANGNSFDFTTKLLHLAWH 493

Query: 495 PSENSIACAASNSLYMYYA 513
           PSENSIACAA+NSLYMYYA
Sbjct: 494 PSENSIACAAANSLYMYYA 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/516 (82%), Positives = 462/516 (89%), Gaps = 7/516 (1%)

Query: 1   MDNGGGSSEAAA---QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG 57
           M+ G   +EA A   QPLEWKFSQVFGERTAGEEVQEVDIISAIEFD+SGDHLATGDRGG
Sbjct: 1   MNGGDEVAEAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGG 60

Query: 58  RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117
           RVVLFERTDT+D+GG RRDLE M Y +SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
Sbjct: 61  RVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 120

Query: 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177
           IRWCQ+AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P KA GNG +  S  S+I K
Sbjct: 121 IRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGK 180

Query: 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINS 237
            Y+ANGG  +++    SND S  PGG  SLRLPVVTS ET+L+A CRR+YAHAHDYHINS
Sbjct: 181 QYLANGG--DKSHNLPSNDLSISPGGFPSLRLPVVTSNETSLMARCRRVYAHAHDYHINS 238

Query: 238 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 297
           ISNNSDGETFISADDLRINLWNLEISNQSFNI DVKPANMEDLTEVITSAEFHP+HCNML
Sbjct: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNML 298

Query: 298 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357
           AYSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKFAR+GRHILS
Sbjct: 299 AYSSSKGSIRLIDMRQSALCDSHAKLFEEPEAPGSRSFFTEIIASISDIKFARDGRHILS 358

Query: 358 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 417
           RDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECC SGDG RVATGSY
Sbjct: 359 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCSSGDGLRVATGSY 418

Query: 418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 477
           SNLFRVFGC+ GS E++TLEASKNPMRRQVQTPSRPSR L S++ VVRR  GA+   +DA
Sbjct: 419 SNLFRVFGCAPGSTEASTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GAEGPGVDA 476

Query: 478 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           NGN+FDF+ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 477 NGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685484|ref|NP_849681.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191506|gb|AEE29627.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/513 (78%), Positives = 449/513 (87%), Gaps = 16/513 (3%)

Query: 3   NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG  +  +  P  LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2   NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTDT+D+GG R+DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P           S  S IP   +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN 240
            NG   ++     S D SFPPGG+ SLRLPVVTSQETNLVA CRR+YAHAHDYHINSISN
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVTSQETNLVARCRRVYAHAHDYHINSISN 229

Query: 241 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300
           +SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAYS
Sbjct: 230 SSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYS 289

Query: 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360
           SSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRDY
Sbjct: 290 SSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDY 349

Query: 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420
           MTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSNL
Sbjct: 350 MTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 409

Query: 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 480
           FRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR  G+++   +ANGN
Sbjct: 410 FRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANGN 467

Query: 481 AFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           A+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 468 AYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810182|emb|CAN66900.1| hypothetical protein VITISV_029693 [Vitis vinifera]

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/513 (79%), Positives = 447/513 (87%), Gaps = 9/513 (1%)

Query: 3   NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG     EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2   NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTD RD+GG RRDLEMMD+ +  HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDKRDHGGYRRDLEMMDHXVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG    +   +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN 240
            NGGC +R++G  S D SFP G  ++L  P V S ET+L A CRRIYAHAHDYHINSISN
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTVHSNETSLSARCRRIYAHAHDYHINSISN 237

Query: 241 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300
           NSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLAYS
Sbjct: 238 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAYS 297

Query: 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360
           SSKGSIRLID+RQSALCD+H+KLFE  EAP ++SFFTEIIASISDIKF ++GR+ILSRDY
Sbjct: 298 SSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRDY 357

Query: 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420
           M LKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNL
Sbjct: 358 MNLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGTRVATGSYSNL 417

Query: 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 480
           FRVFGC+ GS E+TTLEASKNPMRRQ   PSRP R L + + V RR  G ++ A+DANGN
Sbjct: 418 FRVFGCTAGSTEATTLEASKNPMRRQAPAPSRP-RSLSTFARVGRR--GPESPAVDANGN 474

Query: 481 AFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513
           AFD S KLLHLAWHP+ENS+ACAA+NSLYMY+A
Sbjct: 475 AFDLSTKLLHLAWHPTENSLACAAANSLYMYFA 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850168|ref|XP_002892965.1| ATB beta [Arabidopsis lyrata subsp. lyrata] gi|297338807|gb|EFH69224.1| ATB beta [Arabidopsis lyrata subsp. lyrata]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/499 (80%), Positives = 445/499 (89%), Gaps = 12/499 (2%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 20  LEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 79

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           +DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ AN AL+LLSTN
Sbjct: 80  KDLEETDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTN 138

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKK+KK+ + N+ P +            S+IP   + NG    +  G  S
Sbjct: 139 DKTIKYWKVQEKKIKKISEMNIDPSREGS---------SSIPPQLVTNGLPANKAHGYLS 189

Query: 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254
           N+ SFPPGG+ SLRLPVVTSQETNLVA CRR+YAHAHDYHINSISN+SDGETFISADDLR
Sbjct: 190 NEYSFPPGGIPSLRLPVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLR 249

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           +NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAYSSSKGSIRLIDMRQS
Sbjct: 250 VNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQS 309

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 374
           ALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRDYMTLKLWDINMDSGP
Sbjct: 310 ALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGP 369

Query: 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434
           VA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFG S+GS E+ 
Sbjct: 370 VASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAA 429

Query: 435 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494
           TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR  G+++   +ANGNA+DF+ KLLH+AWH
Sbjct: 430 TLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANGNAYDFTTKLLHMAWH 487

Query: 495 PSENSIACAASNSLYMYYA 513
           P+ENSIACAA+NSLYMYYA
Sbjct: 488 PTENSIACAAANSLYMYYA 506

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.7875	0.9629	0.9409	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.7859	0.9688	0.9920	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.4980	0.9200	0.9772	yes	no
Q00006	2ABB_RABIT	No assigned EC number	0.5106	0.7953	0.9878	yes	no
Q4R8L3	2ABB_MACFA	No assigned EC number	0.5125	0.8109	0.9390	N/A	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.4980	0.8538	0.9798	yes	no
P36877	2ABB_RAT	No assigned EC number	0.5146	0.8109	0.9390	yes	no
P36872	2ABA_DROME	No assigned EC number	0.4881	0.8654	0.8897	yes	no
Q5E9Q7	2ABB_BOVIN	No assigned EC number	0.5125	0.8109	0.9390	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.5103	0.8187	0.9859	yes	no
Q66LE6	2ABD_HUMAN	No assigned EC number	0.5030	0.8440	0.9558	yes	no
Q5R4A2	2ABB_PONAB	No assigned EC number	0.5125	0.8109	0.9390	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.5049	0.8654	0.9589	yes	no
Q38821	2ABA_ARATH	No assigned EC number	0.7577	0.9883	0.9883	no	no
Q6ZWR4	2ABB_MOUSE	No assigned EC number	0.5125	0.8109	0.9390	yes	no
Q5ZIY5	2ABD_CHICK	No assigned EC number	0.5030	0.8440	0.9600	yes	no
A1L3L9	2ABB_XENLA	No assigned EC number	0.5051	0.8284	0.9081	N/A	no
B6VA23	2ABB_CARAU	No assigned EC number	0.5083	0.8109	0.9390	N/A	no
Q00362	2ABA_YEAST	No assigned EC number	0.5289	0.7309	0.7129	yes	no
Q6NY64	2ABD_DANRE	No assigned EC number	0.5019	0.8538	0.9798	yes	no
Q5Z8Z7	2ABA_ORYSJ	No assigned EC number	0.7578	0.9824	0.8674	no	no
A2X2K3	2ABB_ORYSI	No assigned EC number	0.7875	0.9629	0.9409	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.495.1 hypothetical protein (506 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-156
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  452 bits (1165), Expect = e-156
 Identities = 224/508 (44%), Positives = 285/508 (56%), Gaps = 65/508 (12%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
             KF Q FG++       E D I+A+EFD++G +LATGD+GGRVVLFER           
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFER----------- 55

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
                    S   E+++ TEFQSHE EFDYLKSLEIEEKIN I W        +LLSTND
Sbjct: 56  -------EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIKLWK+ EK +K V + N+                                     S+
Sbjct: 109 KTIKLWKIYEKNLKVVAENNL-------------------------------------SD 131

Query: 196 DSSFPPGG----VSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD 251
               P GG       L LP ++  +  + A   R+YA+AH YHINSIS NSD ET +SAD
Sbjct: 132 SFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD 191

Query: 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311
           DLRINLWNLEI + SFNIVD+KP NME+LTEVITSAEFHP  CN+  YSSSKG I+L D+
Sbjct: 192 DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251

Query: 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD 371
           RQSALCD   KLFE         FF EI++SISD KF+ NGR+ILSRDY+T+K+WD+NM 
Sbjct: 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311

Query: 372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--- 428
             P+ T  +H  L  +L D+YEND+IFDKFE   SGD   V +GSYSN F ++       
Sbjct: 312 KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGF 371

Query: 429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG---NAFDFS 485
                    A  +    +V+  +        L     R   +            +  D  
Sbjct: 372 KDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLL 431

Query: 486 MKLLHLAWHPSENSIACAASNSLYMYYA 513
            K+LH +WHP E+S+A AA+N+L+++  
Sbjct: 432 KKILHRSWHPFEDSVAIAATNNLFVFSK 459

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 74/394 (18%), Positives = 131/394 (33%), Gaps = 120/394 (30%)

Query: 36  DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
             ++ + F   G  LATG   G + ++             DLE  +              
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGEL----------LRT 46

Query: 96  FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155
            + H               +  +     A+       ++DKTI+LW ++    + V    
Sbjct: 47  LKGHT------------GPVRDVAAS--ADGTYLASGSSDKTIRLWDLE--TGECVRTLT 90

Query: 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRL-PVVTS 214
            H         +     S  P   + +           S D +        +++  V T 
Sbjct: 91  GH------TSYVSSVAFS--PDGRILSSS---------SRDKT--------IKVWDVETG 125

Query: 215 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFNIVDV 272
           +          +  H     +NS++ + DG TF+  S+ D  I LW+L     +   V  
Sbjct: 126 KC------LTTLRGHTDW--VNSVAFSPDG-TFVASSSQDGTIKLWDLR----TGKCV-- 170

Query: 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 332
             A +   T  + S  F P    +L+ SSS G+I+L D+       T        E    
Sbjct: 171 --ATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGT----LRGHENG-- 221

Query: 333 RSFFTEIIASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390
                     ++ + F+ +G  + S   D  T+++WD+      V T   H +       
Sbjct: 222 ----------VNSVAFSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------- 262

Query: 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424
                S+        S DG R+A+GS     R++
Sbjct: 263 -----SVTS---LAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 52/288 (18%), Positives = 106/288 (36%), Gaps = 46/288 (15%)

Query: 225 RIYAHAHDYHINSISNNS-DGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDL 280
           +     HD  ++ ++ +S DG + + A    D  + LW+L    +    ++         
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH------- 154

Query: 281 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340
           +E +TS  F P    + + SS  G+I+L D+R      T +                   
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH----------------T 198

Query: 341 ASISDIKFARNGRHILSRDYM--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 398
             +S + F+ +G  +++      T++LWD++  +G +    +  H    +          
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSVV---------- 246

Query: 399 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458
                  S DG  +A+GS     R++     S+   TL    + +     +P       G
Sbjct: 247 ----SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 459 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 506
           S  G V R+   +   L ++         +  L++ P  + +    S+
Sbjct: 303 SSDGTV-RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 46/221 (20%)

Query: 224 RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 282
           R +  H     +  ++ ++DG    S   D  I LW+LE       +             
Sbjct: 45  RTLKGHTGP--VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------- 95

Query: 283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342
            ++S  F P    +L+ SS   +I++ D+       T                       
Sbjct: 96  -VSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTT----------------LRGHTDW 137

Query: 343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 401
           ++ + F+ +G  + S     T+KLWD+      VAT   H               +    
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHT------------GEVNS-- 182

Query: 402 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 442
               S DG ++ + S     +++  S G     TL   +N 
Sbjct: 183 -VAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG 221

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 69/347 (19%), Positives = 117/347 (33%), Gaps = 74/347 (21%)

Query: 82  YSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLW 141
            S S        ++     P+   L     E+ I  I +  S +  L L  ++D TIKLW
Sbjct: 35  SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGELLLSGSSDGTIKLW 92

Query: 142 KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201
            +   +                   + G H S++                 +S D +   
Sbjct: 93  DLDNGEKLIKS--------------LEGLHDSSV------------SKLALSSPDGNSIL 126

Query: 202 GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 259
              SSL   V     +      R +    H   + S++ + DG+   S    D  I LW+
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184

Query: 260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 319
           L              + +   T+ ++S  F P    ++A  SS G+IRL D+    L   
Sbjct: 185 LRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL-- 234

Query: 320 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVAT 377
                         +      + +S   F+ +G  +   S D  T++LWD+   S  + T
Sbjct: 235 ------------RSTLSGHSDSVVSS--FSPDGSLLASGSSDG-TIRLWDLRSSSSLLRT 279

Query: 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424
              H            + S+        S DG  +A+GS     R++
Sbjct: 280 LSGH------------SSSVLS---VAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 71/428 (16%), Positives = 134/428 (31%), Gaps = 87/428 (20%)

Query: 36  DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
           D I++I F   G+ L +G   G + L++  +          L     S          + 
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 96  FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL------------STNDKTIKLWKV 143
             +       +K  ++      IR  +  + ++  L            S+ D TIKLW +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 144 QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-------ERNFGCASND 196
           +  K       +          P+     S      +A+G                  + 
Sbjct: 186 RTGKPLSTLAGH--------TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 197 SSFPPGGVSSLRLPVVTSQETNLVAGCR----RIYA-----------HAHDYHINSISNN 241
            S     V S      +   + L +G      R++              H   + S++ +
Sbjct: 238 LSGHSDSVVS----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300
            DG+   S   D  + LW+LE          +    ++     ++S  F P    +++  
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360
           S  G+IRL D+R                         E  +++  + F+ +GR + S   
Sbjct: 348 SDDGTIRLWDLRTGKP-----------------LKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 361 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419
             T++LWD++  S                     +           S DG  +A+GS  N
Sbjct: 391 DGTVRLWDLSTGS----------------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434

Query: 420 LFRVFGCS 427
             R++   
Sbjct: 435 TIRLWDLK 442

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG2315	566	consensus Predicted translation initiation factor	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG2314	698	consensus Translation initiation factor 3, subunit	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG2321	703	consensus WD40 repeat protein [General function pr	99.3
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.15
PRK01029	428	tolB translocation protein TolB; Provisional	99.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
COG4946	668	Uncharacterized protein related to the periplasmic	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.08
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.07
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.01
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.96
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.79
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.67
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.65
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
KOG2695	425	consensus WD40 repeat protein [General function pr	98.53
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.4
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.35
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.34
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.29
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
KOG3621	726	consensus WD40 repeat-containing protein [General	98.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.08
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.06
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.02
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.85
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.84
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.73
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.65
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.57
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.45
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.33
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.3
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.28
COG3391	381	Uncharacterized conserved protein [Function unknow	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
PRK02888	635	nitrous-oxide reductase; Validated	97.03
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.97
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.92
KOG2395	644	consensus Protein involved in vacuole import and d	96.91
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.67
KOG2395	644	consensus Protein involved in vacuole import and d	96.66
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.66
PRK13616	591	lipoprotein LpqB; Provisional	96.52
PRK13616	591	lipoprotein LpqB; Provisional	96.51
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.51
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.32
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.24
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.11
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.04
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.93
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.9
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.78
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.34
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.34
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.96
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.42
COG3391	381	Uncharacterized conserved protein [Function unknow	94.35
PRK13684	334	Ycf48-like protein; Provisional	94.24
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.18
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.09
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.86
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.86
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.61
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.53
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.38
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	93.36
KOG2444	238	consensus WD40 repeat protein [General function pr	93.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.15
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.04
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.89
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.2
KOG2444	238	consensus WD40 repeat protein [General function pr	91.68
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.48
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.06
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.92
COG4590	733	ABC-type uncharacterized transport system, permeas	90.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.56
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.45
PRK13684	334	Ycf48-like protein; Provisional	90.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.18
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.55
COG4590	733	ABC-type uncharacterized transport system, permeas	89.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.23
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.1
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.07
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.66
COG5167	776	VID27 Protein involved in vacuole import and degra	88.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	86.79
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.56
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.55
PHA02713	557	hypothetical protein; Provisional	86.36
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.19
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.92
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.54
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	85.15
COG5167	776	VID27 Protein involved in vacuole import and degra	84.58
PHA02713	557	hypothetical protein; Provisional	84.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.72
KOG2247	615	consensus WD40 repeat-containing protein [General	82.43
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	80.97
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.21

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-52  Score=352.48  Aligned_cols=328  Identities=14%  Similarity=0.259  Sum_probs=279.3

Q ss_pred             cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        27 ~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      +.....+|.++|.|++|+|+|..||+|+.|.++|+||..+....                       ....+|.      
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------------~t~KgH~------  157 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------------FTCKGHK------  157 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------------eeecCCc------
Confidence            55567899999999999999999999999999999998876642                       5678898      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            ..|.|++|+|  |+..|++|+.||+|++||.++++..-.                                   
T Consensus       158 ------~WVlcvawsP--Dgk~iASG~~dg~I~lwdpktg~~~g~-----------------------------------  194 (480)
T KOG0271|consen  158 ------NWVLCVAWSP--DGKKIASGSKDGSIRLWDPKTGQQIGR-----------------------------------  194 (480)
T ss_pred             ------cEEEEEEECC--CcchhhccccCCeEEEecCCCCCcccc-----------------------------------
Confidence                  9999999955  899999999999999999998863210                                   


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-----CCCEEEEE-cCCeEEEEEc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWNL  260 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~-~d~~i~vwd~  260 (513)
                                                              .+.+|...|++++|.|     ..++|+++ .||.|+|||+
T Consensus       195 ----------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  195 ----------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             ----------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence                                                    1479999999999965     57789998 6999999999


Q ss_pred             CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      ..+....        .+.+|+.+|+|+.|-.++  +|++++.|++|++|+...|..+    +.            +++|.
T Consensus       235 ~~~~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~------------lkGHa  288 (480)
T KOG0271|consen  235 KLGTCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RE------------LKGHA  288 (480)
T ss_pred             cCceEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hh------------hcccc
Confidence            8555443        568999999999998775  9999999999999999887763    23            45666


Q ss_pred             ccEEEEEEe-----------ec-------------------------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287          341 ASISDIKFA-----------RN-------------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       341 ~~v~~i~~s-----------p~-------------------------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      ..|+.++.+           |.                         ++.|++|+| .++.+|+-....+++..+.+|+.
T Consensus       289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~  368 (480)
T KOG0271|consen  289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA  368 (480)
T ss_pred             hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence            778888776           22                         345999987 99999998876779999999998


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      .+               ..+.||||++++|+++-|..|++|+..+| +.+.++.+|-.+|+.++|+.|.++|++|+.|.+
T Consensus       369 lV---------------n~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT  432 (480)
T KOG0271|consen  369 LV---------------NHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDST  432 (480)
T ss_pred             he---------------eeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence            74               48999999999999999999999999999 555899999999999999999999999999999


Q ss_pred             EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      +++   |+.....+..+..+|...|.++.|+|||..+++|+.|.++-+
T Consensus       433 LKv---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~l  477 (480)
T KOG0271|consen  433 LKV---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRL  477 (480)
T ss_pred             EEE---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEe
Confidence            999   555544455566679999999999999999999886655443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-52  Score=347.96  Aligned_cols=429  Identities=63%  Similarity=1.000  Sum_probs=368.3

Q ss_pred             cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287           10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (513)
Q Consensus        10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (513)
                      .+...+.|++.|+|+..     +...+-|++|.|...|.+||||..+|+|.+|..+....                  .+
T Consensus         5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e   61 (433)
T KOG1354|consen    5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE   61 (433)
T ss_pred             Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence            45678899999998843     56779999999999999999999999999998654332                  27


Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      |.+...++.|+|||+|+++++++..|+.++|++..+...++..+.|++|++|.+.....+. -..+....          
T Consensus        62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~----------  130 (433)
T KOG1354|consen   62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE----------  130 (433)
T ss_pred             eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc----------
Confidence            8899999999999999999999999999999998888899999999999999998754332 11111000          


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                                   ..++.-.++++..+...+......+++.+..+|+..|+++.++.|++.+++
T Consensus       131 -----------------------------~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  131 -----------------------------GPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             -----------------------------CCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence                                         123455678888888888889999999999999999999999999999999


Q ss_pred             EcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          250 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       250 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                      ++|=.|.+|+++...+.+.+++++|..+.....-|++..|+|...++|+..+..|+|++.|+|...+++...+.++.+.+
T Consensus       182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      +..+.++.+....|..+.|+++|+++++.+.-+|++||+.++.+++.+++.|......++.+|+++++++-+.++|+.++
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL  489 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~  489 (513)
                      .+++||+..+.+++|++..+.+...+++....+...-... .-+.+.++           +...+.+..+..+++...|.
T Consensus       342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~-k~~~V~~~-----------g~r~~~~~~vd~ldf~kkil  409 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVL-KLRLVSSS-----------GKRKRDEISVDALDFRKKIL  409 (433)
T ss_pred             ceEecccccceEEEecCCCCcceeecccccccCCcccccc-cceeeecC-----------CCccccccccchhhhhhHHH
Confidence            9999999999999999888766666666555442111111 11122222           22222355667778899999


Q ss_pred             EEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          490 HLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       490 ~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      +.+|||..+.+|++..+.++||++
T Consensus       410 h~aWhp~en~ia~aatnnlyif~~  433 (433)
T KOG1354|consen  410 HTAWHPKENSIAVAATNNLYIFQD  433 (433)
T ss_pred             hhccCCccceeeeeecCceEEecC
Confidence            999999999999999999999975

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-46  Score=312.55  Aligned_cols=301  Identities=16%  Similarity=0.252  Sum_probs=255.3

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (513)
                      .+.-.|+...   +.....-.+|..+|.|++|+|||+.||+|+.||+|++||.++++.                      
T Consensus       137 ~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------  191 (480)
T KOG0271|consen  137 TTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------  191 (480)
T ss_pred             ceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------
Confidence            3445577764   333345568999999999999999999999999999999888876                      


Q ss_pred             EeccccCCCCcccccccccccccceeEEEee---cCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      .-..|.+|.            ..|++++|.|   .+...+|++++.||.++|||+..+.+...                 
T Consensus       192 ~g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~-----------------  242 (480)
T KOG0271|consen  192 IGRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT-----------------  242 (480)
T ss_pred             ccccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE-----------------
Confidence            345689999            9999999987   45667999999999999999998876543                 


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                 +.+|+.+|+|++|.-+| +|+
T Consensus       243 -----------------------------------------------------------lsgHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  243 -----------------------------------------------------------LSGHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             -----------------------------------------------------------eccCccceEEEEEcCCc-eEE
Confidence                                                                       46999999999998765 788


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-----------CCC-----------------------
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH-----------------------  293 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~-----------------------  293 (513)
                      +| .|++|++|+...+..+.        .+.+|...|+.++.+           |.+                       
T Consensus       263 SgS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~  334 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD  334 (480)
T ss_pred             ecCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence            88 69999999998755442        678999999999887           222                       


Q ss_pred             -CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCC
Q 010287          294 -CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD  371 (513)
Q Consensus       294 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~  371 (513)
                       +..+++|+.|.++.+|+.......   +.            -+.+|..-|+.+.||||++++++++ |..|++||.++ 
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~kkp---i~------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-  398 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSKKP---IT------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-  398 (480)
T ss_pred             CcceeEEecCCceEEEecccccccc---hh------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-
Confidence             136999999999999997543321   11            1567778999999999999999999 59999999997 


Q ss_pred             CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      ++.+.++++|-..               |+.++|+.|.++|++|+.|.++++|++++. ++...+.+|...|.++.|+||
T Consensus       399 Gk~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  399 GKFLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             cchhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCC
Confidence            9999999999877               559999999999999999999999999976 666899999999999999999


Q ss_pred             CCceeeecCCCeEEE
Q 010287          452 RPSRPLGSLSGVVRR  466 (513)
Q Consensus       452 ~~~l~~~~~d~~i~~  466 (513)
                      |..+++|+.|..+++
T Consensus       463 G~rV~sggkdkv~~l  477 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRL  477 (480)
T ss_pred             CceeecCCCceEEEe
Confidence            999999999999998

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-46  Score=318.88  Aligned_cols=283  Identities=20%  Similarity=0.315  Sum_probs=252.1

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .++.+.+|..+.||++++.||||+.+|.+++|+..+..                       ....|.||+          
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~----------  217 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT----------  217 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc----------
Confidence            45678999999999999999999999999999987654                       347799999          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|.++.|+|..++..+++++.||++++|++.+......                                       
T Consensus       218 --~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~---------------------------------------  256 (459)
T KOG0272|consen  218 --SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD---------------------------------------  256 (459)
T ss_pred             --cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---------------------------------------
Confidence              889999999965567899999999999999987542221                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           +.+|...|..++|+|+|++|.++ .|.+-++||++++....  
T Consensus       257 -------------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--  297 (459)
T KOG0272|consen  257 -------------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--  297 (459)
T ss_pred             -------------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--
Confidence                                                 36888899999999999999999 69999999999877654  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            ..++|...|.+++|+||| .++++|+.|..-+|||+|+++.    +..            +.+|..+|.+|+|+
T Consensus       298 ------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~----im~------------L~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  298 ------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC----IMF------------LAGHIKEILSVAFS  354 (459)
T ss_pred             ------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcE----EEE------------ecccccceeeEeEC
Confidence                  458999999999999999 9999999999999999999986    333            45677899999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~  427 (513)
                      |+|..|++|+ |++++|||++. ...+.++.+|...               |+.++|+| .|.+|+|++.|+++++|...
T Consensus       355 PNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nl---------------VS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  355 PNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNL---------------VSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             CCceEEeecCCCCcEEEeeecc-cccceecccccch---------------hhheEecccCCeEEEEcccCcceeeecCC
Confidence            9999999987 59999999997 7889999999987               44899998 78899999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +. .....+.+|.+.|.++.+++++.++++++.|+++++
T Consensus       419 ~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  419 TW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL  456 (459)
T ss_pred             Cc-ccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence            88 555899999999999999999999999999999998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-44  Score=296.67  Aligned_cols=439  Identities=50%  Similarity=0.769  Sum_probs=352.8

Q ss_pred             ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT   94 (513)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (513)
                      -.|++.|+||++.........+.|+++.|...|.|||+|...|+|.+|.....                  .+.+|++..
T Consensus         6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s------------------~~ceykf~t   67 (460)
T COG5170           6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKS------------------YGCEYKFFT   67 (460)
T ss_pred             hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccc------------------cccchhhhh
Confidence            46999999999998888999999999999999999999999999999986432                  346889999


Q ss_pred             cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                      +|++|++||+|+++++++..|+.|.|+.......++..+.|++|++|.+....++.+.+-+...+..             
T Consensus        68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~-------------  134 (460)
T COG5170          68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFH-------------  134 (460)
T ss_pred             hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccc-------------
Confidence            9999999999999999999999999987555668888999999999999887665554433322111             


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCe
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR  254 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~  254 (513)
                           +|.|..+               .....+++..+.....+....+.+.+...|...+.++.|+.|.+.+++++|=.
T Consensus       135 -----~~~~g~~---------------~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLr  194 (460)
T COG5170         135 -----SPMGGPL---------------TSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLR  194 (460)
T ss_pred             -----cccCCCc---------------CCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecccee
Confidence                 1222111               13345566666666666667777788899999999999999999999999999


Q ss_pred             EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcc
Q 010287          255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS  334 (513)
Q Consensus       255 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  334 (513)
                      |.+|+++.....+.+++++|..+......|++..|+|.....|...+..|.|++-|+|...++....+.++...++....
T Consensus       195 INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~  274 (460)
T COG5170         195 INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD  274 (460)
T ss_pred             eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch
Confidence            99999999999999999999999888999999999999888999999999999999999888887777787777777778


Q ss_pred             ccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          335 FFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       335 ~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                      ++.+....|..+.|+++|+++++.+.-+|+|||+++...++.++..|......+++.|+++++++-+.+.||.|.+.+++
T Consensus       275 ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~s  354 (460)
T COG5170         275 FFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLS  354 (460)
T ss_pred             hHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccc
Confidence            88888899999999999999999998999999999988999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecCCCCcc----ceeecCCCCc----------eeEEE-EcCCCCceeeecCCCeEEEecCCCCCccccCC
Q 010287          415 GSYSNLFRVFGCSEGSAE----STTLEASKNP----------MRRQV-QTPSRPSRPLGSLSGVVRRVKGADNSALDANG  479 (513)
Q Consensus       415 ~~~dg~i~vwd~~~~~~~----~~~~~~~~~~----------v~~~~-~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  479 (513)
                      |+..+..-+|-..+....    ...+..+..+          |...- .........+.+.+|.+..  ..       -.
T Consensus       355 gsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~e-------D~  425 (460)
T COG5170         355 GSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--CE-------DP  425 (460)
T ss_pred             cccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--cc-------Cc
Confidence            999988888874432111    1111111111          11110 1111112333444444444  11       12


Q ss_pred             ccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      ..+++...|.+.+|||-..-+|++..+.+++|++
T Consensus       426 d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~  459 (460)
T COG5170         426 DNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK  459 (460)
T ss_pred             chhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence            3445577899999999999999999999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.6e-41  Score=293.84  Aligned_cols=384  Identities=18%  Similarity=0.269  Sum_probs=275.6

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCC-CCCCccCccccccccccCCCcceEe---------------
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYK---------------   93 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------   93 (513)
                      .+.+|..+++-..|||.|.|+|+|...|.||||+....+ .+....+.+.+...+..|..+.+-.               
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            466899999999999999999999999999999977633 2223334455555555555543211               


Q ss_pred             -------ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287           94 -------TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (513)
Q Consensus        94 -------~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                             -++.||.            ..|+++.|-|+.. -++++++.|++|.+|+=...+.+..               
T Consensus       134 ~DSG~SvGei~GhS------------r~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s---------------  185 (603)
T KOG0318|consen  134 WDSGNSVGEITGHS------------RRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSS---------------  185 (603)
T ss_pred             ecCCCccceeeccc------------eeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeec---------------
Confidence                   1133333            6677777766544 3566777777777665333222111               


Q ss_pred             cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  246 (513)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  246 (513)
                                                                                   ...|..-|.|+.|+|||..
T Consensus       186 -------------------------------------------------------------~r~HskFV~~VRysPDG~~  204 (603)
T KOG0318|consen  186 -------------------------------------------------------------FREHSKFVNCVRYSPDGSR  204 (603)
T ss_pred             -------------------------------------------------------------ccccccceeeEEECCCCCe
Confidence                                                                         2567778999999999999


Q ss_pred             EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-----
Q 010287          247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-----  320 (513)
Q Consensus       247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----  320 (513)
                      |++. .||+|.+||-.+++....+-     .-..|.+.|..++|+||+ ..|++++.|.++++||+.+.++..+.     
T Consensus       205 Fat~gsDgki~iyDGktge~vg~l~-----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEKVGELE-----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             EEEecCCccEEEEcCCCccEEEEec-----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence            9998 79999999999888776542     235899999999999999 99999999999999999887643110     


Q ss_pred             ----------------------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC---
Q 010287          321 ----------------------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP---  374 (513)
Q Consensus       321 ----------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~---  374 (513)
                                            ...+-...++.....+.+|...|+++..+|++.+|++|+. |.|.-|+... +..   
T Consensus       279 v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~  357 (603)
T KOG0318|consen  279 VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRL  357 (603)
T ss_pred             hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-cccccc
Confidence                                  0111122333355567899999999999999999999986 9999999865 211   


Q ss_pred             --------eeeeeccc-cc---------c---------------------c-ccc-----------------------cc
Q 010287          375 --------VATFQVHE-HL---------R---------------------P-KLC-----------------------DL  391 (513)
Q Consensus       375 --------~~~~~~~~-~~---------~---------------------~-~~~-----------------------~~  391 (513)
                              +..+..++ ..         .                     + .++                       ..
T Consensus       358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~  437 (603)
T KOG0318|consen  358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV  437 (603)
T ss_pred             ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence                    11111111 00         0                     0 000                       00


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                      ......+...+++++|++..++.|+.|+.|+||.+.... +....+..|..+++.++++|++.+||+|...+.+.+   +
T Consensus       438 ~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~---y  514 (603)
T KOG0318|consen  438 SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL---Y  514 (603)
T ss_pred             eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEE---E
Confidence            001112245678999999999999999999999998754 233577889999999999999999999999999999   2


Q ss_pred             CCCccccCCcccc-ccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          471 DNSALDANGNAFD-FSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       471 ~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .....+.....+. |+.+|.+++|+|+..++|+|+ |..++||.
T Consensus       515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            2222222233333 899999999999999999999 77888886

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-42  Score=295.25  Aligned_cols=278  Identities=17%  Similarity=0.225  Sum_probs=241.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .+|..+.|  +.++..|++|+.+|.++||+..+......                                         
T Consensus       176 rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~-----------------------------------------  212 (459)
T KOG0272|consen  176 RPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT-----------------------------------------  212 (459)
T ss_pred             CcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------------------
Confidence            78899999  45888999999999999999987643332                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                         +.+|...|.++.|+|.  +..+++| .||++++|++.+...+.  
T Consensus       213 -----------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--  255 (459)
T KOG0272|consen  213 -----------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--  255 (459)
T ss_pred             -----------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--
Confidence                                               5799999999999996  6689998 69999999998654432  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|...|..++|+|+| ++|++++.|.+.++||++++....                ...||...|.+++|.
T Consensus       256 ------~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL----------------~QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  256 ------DLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL----------------LQEGHSKGVFSIAFQ  312 (459)
T ss_pred             ------hhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH----------------hhcccccccceeEec
Confidence                  678999999999999999 999999999999999999987522                146788999999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |||.++++|+ |..-+|||+++ ++.+..+.+|...               |.+++|+|+|..||||+.|++++|||++.
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             CCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            9999999987 58889999998 9999999998876               56999999999999999999999999997


Q ss_pred             CCccceeecCCCCceeEEEEcC-CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287          429 GSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN  506 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~  506 (513)
                      . ....++.+|.+-|..+.|+| .|.+|++++.|+.+++   |...........-+|.+.|.++..+||+.++++++ |.
T Consensus       377 r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki---Ws~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  377 R-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI---WSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             c-ccceecccccchhhheEecccCCeEEEEcccCcceee---ecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence            6 44689999999999999998 7889999999999999   44333334456668999999999999999999888 88


Q ss_pred             cEEEEeC
Q 010287          507 SLYMYYA  513 (513)
Q Consensus       507 ~~~i~~~  513 (513)
                      ++++|.+
T Consensus       453 T~KLW~~  459 (459)
T KOG0272|consen  453 TIKLWRP  459 (459)
T ss_pred             eeeeccC
Confidence            9999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.8e-40  Score=297.37  Aligned_cols=415  Identities=14%  Similarity=0.170  Sum_probs=306.3

Q ss_pred             ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT   94 (513)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (513)
                      ..|.+..  |.....-...|+.||.-++|+|.|.++|+|+.||.++|||+..+.                       ...
T Consensus        87 rv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~th  141 (775)
T KOG0319|consen   87 RVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CTH  141 (775)
T ss_pred             EEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EEE
Confidence            3455554  222222345699999999999999999999999999999998765                       346


Q ss_pred             cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCcee-eeeeccccCCCcccCCCCcccCccc
Q 010287           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      .|.||.            +.|.++.|+|..+-..|+++..|+++++||+..... ......+...               
T Consensus       142 ~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~---------------  194 (775)
T KOG0319|consen  142 SFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA---------------  194 (775)
T ss_pred             EecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh---------------
Confidence            789999            999999999977777889999999999999985533 3222222211               


Q ss_pred             ccCceeccCCCccccc-----------------------------c-----CCCCCCCCcCCCCCCceeceeeccCCcc-
Q 010287          174 AIPKSYMANGGCGERN-----------------------------F-----GCASNDSSFPPGGVSSLRLPVVTSQETN-  218 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~-----------------------------~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  218 (513)
                      .+++++++|+..+...                             .     ......+.++.++.+.++.|+....... 
T Consensus       195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~  274 (775)
T KOG0319|consen  195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVY  274 (775)
T ss_pred             eeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhh
Confidence            1233333332211100                             0     0000235566667777777766432110 


Q ss_pred             -----------------------------------------------------------------------------ccc
Q 010287          219 -----------------------------------------------------------------------------LVA  221 (513)
Q Consensus       219 -----------------------------------------------------------------------------~~~  221 (513)
                                                                                                   ...
T Consensus       275 ~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~  354 (775)
T KOG0319|consen  275 KQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP  354 (775)
T ss_pred             hhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence                                                                                         000


Q ss_pred             ceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287          222 GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  300 (513)
Q Consensus       222 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  300 (513)
                      ......+.+|...|.++....+|-+|++| .|.++++|.++.+......+    ....+|...|.+++++..+..+|+++
T Consensus       355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsv  430 (775)
T KOG0319|consen  355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSV  430 (775)
T ss_pred             CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEe
Confidence            00011346888889999876778899998 69999999985332221111    24578999999999999888999999


Q ss_pred             eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287          301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~  379 (513)
                      |.|.++++|++...+.... ...+.      .......|...|++++++|+.+++++|+. .+.+||++.. .....++.
T Consensus       431 S~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLs  502 (775)
T KOG0319|consen  431 SQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLS  502 (775)
T ss_pred             cCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEee
Confidence            9999999999976332111 11111      11123568889999999999999999985 9999999994 88999999


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  459 (513)
                      +|...               |+++.|+|..+.|+|+|.|++|+||.+++..+. .++++|...|....|-.+++.|++++
T Consensus       503 GH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  503 GHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             CCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEecc
Confidence            99876               679999999999999999999999999998554 89999999999999999999999999


Q ss_pred             CCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          460 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       460 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .||.+++   |.....+-....-.|..+|.+++-+|...++++|+.|+.++++
T Consensus       567 adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  567 ADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             CCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            9999999   6555434444555799999999999999999988866666553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.4e-39  Score=262.45  Aligned_cols=291  Identities=14%  Similarity=0.218  Sum_probs=239.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|...|.++.|++|.++|++++.||.+.|||.-+..++                       ..+.-..         
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s---------   97 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS---------   97 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence            56799999999999999999999999999999997655432                       1111111         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|...+|+|  .++++++|+.|+...||++.+.+...                                       
T Consensus        98 ---~WVMtCA~sP--Sg~~VAcGGLdN~Csiy~ls~~d~~g---------------------------------------  133 (343)
T KOG0286|consen   98 ---SWVMTCAYSP--SGNFVACGGLDNKCSIYPLSTRDAEG---------------------------------------  133 (343)
T ss_pred             ---eeEEEEEECC--CCCeEEecCcCceeEEEecccccccc---------------------------------------
Confidence               7899999976  56699999999999999998542111                                       


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                      .+               .....+.+|.+.+.|+.|-+|+++|.++.|.++.+||++++++..  
T Consensus       134 ----------------~~---------------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~--  180 (343)
T KOG0286|consen  134 ----------------NV---------------RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ--  180 (343)
T ss_pred             ----------------cc---------------eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE--
Confidence                            00               111125799999999999997665554589999999999887654  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|.+.|.++.++|..++.|++|+-|+..++||+|.+..    ..+            |.+|...|++++|.
T Consensus       181 ------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qt------------F~ghesDINsv~ff  238 (343)
T KOG0286|consen  181 ------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQT------------FEGHESDINSVRFF  238 (343)
T ss_pred             ------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEe------------ecccccccceEEEc
Confidence                  56899999999999994449999999999999999999876    344            44555889999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |+|.-+++|+| ++.++||++. .+.+..+...             ..+.+|++++||..|++|++|..|..+.+||.-.
T Consensus       239 P~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~-------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  239 PSGDAFATGSDDATCRLYDLRA-DQELAVYSHD-------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             cCCCeeeecCCCceeEEEeecC-CcEEeeeccC-------------cccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence            99999999997 9999999996 6666666522             2344578999999999999999999999999886


Q ss_pred             CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + +....+.+|.+.|.++..+|||--+++|++|..+||
T Consensus       305 ~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  305 G-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             c-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence            6 556889999999999999999999999999999998

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-38  Score=287.25  Aligned_cols=398  Identities=16%  Similarity=0.196  Sum_probs=290.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+.+|-+.|+++.|+.|.++|++|++|-.++||.+...+..                     ....+.+|.         
T Consensus       140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------  189 (893)
T KOG0291|consen  140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------  189 (893)
T ss_pred             eecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC---------
Confidence            46789999999999999999999999999999998766532                     345688999         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeec---cccCC-CcccCCCCcccCcccc--c-CceeccC
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD---WNVHP-EKAAGNGPIFGSHVSA--I-PKSYMAN  182 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~  182 (513)
                         +.|.+.-|  ..+...+++.+.||.+.+|............   ..... ......+.-......+  . ...+...
T Consensus       190 ---d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~  264 (893)
T KOG0291|consen  190 ---DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN  264 (893)
T ss_pred             ---cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence               88999889  5566789999999999999876321000000   00000 0000000000000000  0 0000001


Q ss_pred             CCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEc
Q 010287          183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNL  260 (513)
Q Consensus       183 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~  260 (513)
                      +.-+.....+....+.+++-..|.+.++.+.....+..       +.-...+|..++|+..|.+|+.| . =|.+.||+.
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~-------LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW  337 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS-------LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW  337 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE-------eecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence            10000001112223445666777777877765443221       12234568999999999999998 3 679999999


Q ss_pred             CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      ....-.+        +.++|...+++++++||| +++++|+.||.|+|||..++.+    +.+            +.+|.
T Consensus       338 qsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC----~vT------------FteHt  392 (893)
T KOG0291|consen  338 QSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFC----FVT------------FTEHT  392 (893)
T ss_pred             eccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceE----EEE------------eccCC
Confidence            8654433        568999999999999999 9999999999999999998876    344            45566


Q ss_pred             ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      +.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+....              ..+++..|.|..+++|+.|.
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d~  457 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQDS  457 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccce
Confidence            8999999999999999987 69999999996 88888888776532              23788899999999999775


Q ss_pred             -cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          420 -LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       420 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                       .|.+|++++| +++..+.+|.+||.++.|+|.+..|+++|+|.+||+   |...........+++...++.++|+|||+
T Consensus       458 F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  458 FEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIRSDVLAVSFRPDGK  533 (893)
T ss_pred             EEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeeccceeEEEEcCCCC
Confidence             6999999999 677899999999999999999999999999999999   55543223445566789999999999999


Q ss_pred             EEEEEc-CCcEEEEeC
Q 010287          499 SIACAA-SNSLYMYYA  513 (513)
Q Consensus       499 ~la~~~-~~~~~i~~~  513 (513)
                      .||+++ ++.+-+|++
T Consensus       534 elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  534 ELAVATLDGQITFFDI  549 (893)
T ss_pred             eEEEEEecceEEEEEh
Confidence            999998 557777763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-37  Score=247.76  Aligned_cols=292  Identities=15%  Similarity=0.187  Sum_probs=228.4

Q ss_pred             CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (513)
Q Consensus        47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~  126 (513)
                      .-+||++++|.+||+|...++..                       ..+++-.+            +.|+.+...  +++
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLeiT--pdk   52 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEIT--PDK   52 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEEc--CCc
Confidence            35899999999999999988774                       23333333            779999994  477


Q ss_pred             ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (513)
                      ..|++++. -.||+||++++....+.                                                      
T Consensus        53 ~~LAaa~~-qhvRlyD~~S~np~Pv~------------------------------------------------------   77 (311)
T KOG0315|consen   53 KDLAAAGN-QHVRLYDLNSNNPNPVA------------------------------------------------------   77 (311)
T ss_pred             chhhhccC-CeeEEEEccCCCCCcee------------------------------------------------------
Confidence            67777665 55999999987532211                                                      


Q ss_pred             eeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE
Q 010287          207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  285 (513)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  285 (513)
                                         + +.+|...|.++.|..+|+.+++| +||+++|||++.....         ....|..+|+
T Consensus        78 -------------------t-~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spVn  128 (311)
T KOG0315|consen   78 -------------------T-FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPVN  128 (311)
T ss_pred             -------------------E-EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCcc
Confidence                               1 36888889999999999999999 7999999999963321         3345779999


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEE
Q 010287          286 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLK  364 (513)
Q Consensus       286 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~  364 (513)
                      ++..+|+. ..|++|..+|.|++||+........    +-           .+-..+|.++...|||.+++++.. |+.+
T Consensus       129 ~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~----li-----------Pe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  129 TVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE----LI-----------PEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             eEEecCCc-ceEEeecCCCcEEEEEccCCccccc----cC-----------CCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence            99999998 8899999999999999987654221    11           111257999999999999999987 9999


Q ss_pred             EEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287          365 LWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       365 iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                      +|++-..     -+++..++.|...               ++.+.+|||+++|++++.|.+++||+.++.-+....+++|
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh  257 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH  257 (311)
T ss_pred             EEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence            9998641     2345566677665               5689999999999999999999999999774455888999


Q ss_pred             CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287          440 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  493 (513)
                      ...+..++||.++.||++|+.|+.+++   |.+...+...+.-+|-....+++.
T Consensus       258 ~rWvWdc~FS~dg~YlvTassd~~~rl---W~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  258 QRWVWDCAFSADGEYLVTASSDHTARL---WDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             CceEEeeeeccCccEEEecCCCCceee---cccccCceeeecCCcccccEEEEe
Confidence            999999999999999999999999999   665533333344455555555554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.7e-37  Score=268.01  Aligned_cols=387  Identities=13%  Similarity=0.183  Sum_probs=287.3

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc---CCCCccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYL  106 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~  106 (513)
                      ....|+.-|.|+.|+|||.++|+.+.||+|.|||=.+++.+                       .++.   +|.      
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk------  235 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK------  235 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc------
Confidence            34578999999999999999999999999999998777753                       3333   777      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            +.|+++.|+|  |+..+++++.|++++|||+.+.++.....+...-+                          -
T Consensus       236 ------GsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--------------------------d  281 (603)
T KOG0318|consen  236 ------GSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--------------------------D  281 (603)
T ss_pred             ------ccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchh--------------------------c
Confidence                  8999999965  88899999999999999999998776654432100                          0


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                      +.+..-|.++..++.+-+|.|.+++....+..       ....+|...|+++..++++++|++| .||.|.-|+..++..
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~-------~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVL-------KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChh-------heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence            00011134555577788888888877665521       1247999999999999999999999 699999999987654


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc-------eeeccccCC--------
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-------KLFEEQEAP--------  330 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~--------  330 (513)
                      ..-       .-+.|...|.+++-+..+  .+++++.|.++++.++..+.......       +.+....+.        
T Consensus       355 ~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  355 DRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             ccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence            310       126799999999988764  57889999999999875432211100       000000000        


Q ss_pred             CCccccc--------cccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee--eeecccccccccccccccCCccc
Q 010287          331 GTRSFFT--------EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       331 ~~~~~~~--------~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      ....++.        ...-...+++++|++..++.|.. +.|+||.+.- .....  ....|...               
T Consensus       426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~~h~a~---------------  489 (603)
T KOG0318|consen  426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLLEHRAA---------------  489 (603)
T ss_pred             CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-CcccceeeeecccCC---------------
Confidence            0000011        12235678999999999999775 9999999984 33222  33344443               


Q ss_pred             eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCC
Q 010287          400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG  479 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  479 (513)
                      ++.+++|||+.||++|...+.+.+||..+..........|...|.+++|+|+.+.+|+|+.|-.|.+....++...  ..
T Consensus       490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~  567 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--II  567 (603)
T ss_pred             ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eE
Confidence            5699999999999999999999999999886655666779999999999999999999999999999555555531  11


Q ss_pred             ccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      -.-.|...|+.++|-.+...+-+|.|-.+++|+.
T Consensus       568 iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  568 IKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             eccccccCceeEEEecCceEEeccCcceeEEecc
Confidence            2224777799999999888888888999999973

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-37  Score=247.40  Aligned_cols=288  Identities=15%  Similarity=0.240  Sum_probs=229.4

Q ss_pred             cccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           29 GEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      ....+|++.|+.++..+. .+.+++++.|..+.+|++.....                  .-....+.|.||.       
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs-------   63 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS-------   63 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc-------
Confidence            356789999999999987 57899999999999999876532                  1123456788888       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..|..+..  +.++++.++++.|+++++||+.+++..+.                                    
T Consensus        64 -----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~------------------------------------  100 (315)
T KOG0279|consen   64 -----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRR------------------------------------  100 (315)
T ss_pred             -----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEE------------------------------------
Confidence                 77999999  45888999999999999999999854332                                    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                              +.+|...|.+++|++|.+.+++| .|.+|++|+... ...
T Consensus       101 ----------------------------------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck  139 (315)
T KOG0279|consen  101 ----------------------------------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCK  139 (315)
T ss_pred             ----------------------------------------EEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEE
Confidence                                                    46899999999999999999999 699999999974 334


Q ss_pred             eeecccCccccccccCCeEEEEEeCCC-CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      +++      .-..+.+.|.|+.|+|+. ...|++++.|++|++||+++-+...                .+.+|.+.++.
T Consensus       140 ~t~------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~----------------~~~gh~~~v~t  197 (315)
T KOG0279|consen  140 YTI------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT----------------TFIGHSGYVNT  197 (315)
T ss_pred             EEE------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----------------ccccccccEEE
Confidence            432      112347899999999983 3789999999999999999866521                15667789999


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      +.+||||.++++|.. |.+.+||++. ++.+..+.....                |.+++|+|+.-+|+.+.. ..|+||
T Consensus       198 ~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~a~~~----------------v~sl~fspnrywL~~at~-~sIkIw  259 (315)
T KOG0279|consen  198 VTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLEAFDI----------------VNSLCFSPNRYWLCAATA-TSIKIW  259 (315)
T ss_pred             EEECCCCCEEecCCCCceEEEEEccC-CceeEeccCCCe----------------EeeEEecCCceeEeeccC-CceEEE
Confidence            999999999999875 9999999996 777766654332                459999999877776654 569999


Q ss_pred             ecCCCCccceeec----CC-----CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          425 GCSEGSAESTTLE----AS-----KNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       425 d~~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |+.++..+ ..++    +.     .-....++|+++|..|..|-.|+.|++
T Consensus       260 dl~~~~~v-~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv  309 (315)
T KOG0279|consen  260 DLESKAVV-EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV  309 (315)
T ss_pred             eccchhhh-hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence            99987433 2222    11     122347899999999999999999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.1e-37  Score=249.00  Aligned_cols=291  Identities=15%  Similarity=0.190  Sum_probs=242.6

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ..+.|+||.            .+|.++.|+  .|.+++++++.||.+.|||.-+........+                 
T Consensus        47 ~rr~LkGH~------------~Ki~~~~ws--~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----------------   95 (343)
T KOG0286|consen   47 TRRTLKGHL------------NKIYAMDWS--TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----------------   95 (343)
T ss_pred             eEEEecccc------------cceeeeEec--CCcCeEEeeccCCeEEEEEcccccceeEEec-----------------
Confidence            346689999            899999995  4888999999999999999877653333221                 


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                                 ....|..++|+|.++++++| 
T Consensus        96 -----------------------------------------------------------~s~WVMtCA~sPSg~~VAcGG  116 (343)
T KOG0286|consen   96 -----------------------------------------------------------PSSWVMTCAYSPSGNFVACGG  116 (343)
T ss_pred             -----------------------------------------------------------CceeEEEEEECCCCCeEEecC
Confidence                                                                       12458899999999999998 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      -|+...||++.+.+.....  ...+.+.+|.+.+.|+.|.+|  ..|++++.|.+..+||+++++.    +..       
T Consensus       117 LdN~Csiy~ls~~d~~g~~--~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~----~~~-------  181 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNV--RVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQ----TQV-------  181 (343)
T ss_pred             cCceeEEEecccccccccc--eeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceE----EEE-------
Confidence            5999999999855221110  011367899999999999996  5899999999999999999886    333       


Q ss_pred             CCccccccccccEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          331 GTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                           +.+|.+.|.+++++| +++.+++|+ |+..++||++. +...++|.+|+.-               |.+++|.|+
T Consensus       182 -----f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesD---------------INsv~ffP~  240 (343)
T KOG0286|consen  182 -----FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESD---------------INSVRFFPS  240 (343)
T ss_pred             -----ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccc---------------cceEEEccC
Confidence                 566779999999999 999999976 69999999997 8999999999976               459999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccC
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM  486 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  486 (513)
                      |.-+++|++|++.++||++...++ ..+.  ....+|++++|+..|++|..|..|..+.+   |+..+.+..+.+.+|..
T Consensus       241 G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v---WDtlk~e~vg~L~GHeN  316 (343)
T KOG0286|consen  241 GDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV---WDTLKGERVGVLAGHEN  316 (343)
T ss_pred             CCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCceeEEEcccccEEEeeecCCceeE---eeccccceEEEeeccCC
Confidence            999999999999999999987433 4443  34578999999999999999999999999   76666667777888999


Q ss_pred             CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          487 KLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +|+++..+|||..+++|+ +..++||.
T Consensus       317 RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  317 RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999 88888884

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-38  Score=269.61  Aligned_cols=278  Identities=19%  Similarity=0.314  Sum_probs=237.8

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .-+|..|.|.|+|+.|++|+..|.+.+|+...                       +.+...+++|+            .+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~  140 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP  140 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence            34899999999999999999999999999532                       22446678999            99


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |.++.|+  .++..+++|..+|.|++|+..-...+.+                                           
T Consensus       141 Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnnVk~~-------------------------------------------  175 (464)
T KOG0284|consen  141 VRTMKWS--HNGTWMISGDKGGMIKYWQPNMNNVKII-------------------------------------------  175 (464)
T ss_pred             ceeEEEc--cCCCEEEEcCCCceEEecccchhhhHHh-------------------------------------------
Confidence            9999994  5788999999999999999865432211                                           


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       -..|...|++++|+|+...|+++ +||+|+|||....+...      
T Consensus       176 ---------------------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~------  216 (464)
T KOG0284|consen  176 ---------------------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER------  216 (464)
T ss_pred             ---------------------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh------
Confidence                                             12455789999999999999998 79999999998665442      


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                        .+.+|.-.|.+++|+|.. .++++++.|..|++||.+++.....                +.+|+..|..+.|+|++.
T Consensus       217 --vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~t----------------lh~HKntVl~~~f~~n~N  277 (464)
T KOG0284|consen  217 --VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLAT----------------LHGHKNTVLAVKFNPNGN  277 (464)
T ss_pred             --eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhh----------------hhhccceEEEEEEcCCCC
Confidence              568999999999999998 8999999999999999999987432                566778999999999999


Q ss_pred             EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCc
Q 010287          354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      +|++++. ..+++||+++ .+.+..+++|...               ++++.|+|-. .+|.+|+.||.|..|.+...+.
T Consensus       278 ~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  278 WLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP  341 (464)
T ss_pred             eeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEecccccc
Confidence            9999885 9999999996 8889999999876               5589999955 5777999999999999885545


Q ss_pred             cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +...-.+|...|.+++++|-|..|++|+.|+.+++
T Consensus       342 ~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  342 LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             ccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence            54556689999999999999999999999999999

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=271.00  Aligned_cols=395  Identities=15%  Similarity=0.216  Sum_probs=290.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-CccCcccc---------ccccccCCCcceEecc-ccC
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEM---------MDYSMSRHPEFRYKTE-FQS   98 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~   98 (513)
                      ...+|++.|-+.-|..+..-+.|-+.||.+.+|......... ..+..-++         .....++..-++..+. +..
T Consensus       184 ~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~  263 (893)
T KOG0291|consen  184 ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ  263 (893)
T ss_pred             eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc
Confidence            356899999999999999999999999999999976332110 00000000         0000000000000000 111


Q ss_pred             CCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287           99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (513)
Q Consensus        99 h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (513)
                      .            +..|++.+|++  ....|+++-..|...+|.+....+++...+...+               ...++
T Consensus       264 ~------------~~kvtaa~fH~--~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~---------------I~t~~  314 (893)
T KOG0291|consen  264 N------------SSKVTAAAFHK--GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK---------------ILTVS  314 (893)
T ss_pred             c------------ccceeeeeccC--CceEEEEEecCCeeEEEecCCceEEEEeecccce---------------eeEEE
Confidence            1            16799999977  4458999999999999999988777665544222               12445


Q ss_pred             eccCCCccccccCCCCCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEE
Q 010287          179 YMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN  256 (513)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~  256 (513)
                      ++..|.++            +.+ ..-|.+-+|+-.....+..       ..+|...+.+++++|||+++++| +||.|+
T Consensus       315 ~N~tGDWi------------A~g~~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVK  375 (893)
T KOG0291|consen  315 FNSTGDWI------------AFGCSKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDGQLIATGAEDGKVK  375 (893)
T ss_pred             ecccCCEE------------EEcCCccceEEEEEeeccceeee-------ccccccceeeEEECCCCcEEEeccCCCcEE
Confidence            55666654            333 3457899998755433222       26899999999999999999999 899999


Q ss_pred             EEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccc
Q 010287          257 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  336 (513)
Q Consensus       257 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      +||...+-...        ++..|+..|+.++|+..+ +.+++++.||+|+.||+...+.    .++|..++.       
T Consensus       376 vWn~~SgfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-------  435 (893)
T KOG0291|consen  376 VWNTQSGFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-------  435 (893)
T ss_pred             EEeccCceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-------
Confidence            99998665443        678899999999999999 9999999999999999987665    666666543       


Q ss_pred             ccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          337 TEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       337 ~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                          ....|++..|.|.++++|+ | -.|.+|++++ ++.+..+.+|++++               .+++|+|++..|++
T Consensus       436 ----~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPV---------------s~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  436 ----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPV---------------SGLSFSPDGSLLAS  495 (893)
T ss_pred             ----eeeeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcc---------------eeeEEccccCeEEe
Confidence                3578899999999999987 4 8899999998 99999999999984               48999999999999


Q ss_pred             EeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-----------ecCC------CCCcccc
Q 010287          415 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----------VKGA------DNSALDA  477 (513)
Q Consensus       415 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-----------~~~~------~~~~~~~  477 (513)
                      ++.|.+|++||+-.......++ .+...+..+.|+|+|+-||++..||.|.+           +++.      +.....+
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~  574 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI  574 (893)
T ss_pred             ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence            9999999999997653333333 34567889999999999999999999998           1111      1111112


Q ss_pred             CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          478 NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       478 ~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      ....-......+.+.+|+||.+|.+|+ .+.++||.+
T Consensus       575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            222223356799999999999988766 889999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-36  Score=261.50  Aligned_cols=333  Identities=18%  Similarity=0.302  Sum_probs=256.0

Q ss_pred             ccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..|..+|.+.+|+|-.. .+|+|+.|-..++|++......+.....|        +|+     ..+.++        +..
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l--------rh~-----~~~~~~--------s~~  233 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL--------RHC-----IREGGK--------SVP  233 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh--------hhh-----hhhhcc--------cCC
Confidence            34999999999999865 99999999999999986421110000000        001     111111        122


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      -...|++++|  +.+|..|++|+.||.+++|+........                                        
T Consensus       234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t----------------------------------------  271 (524)
T KOG0273|consen  234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST----------------------------------------  271 (524)
T ss_pred             ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------------
Confidence            2367999999  6689999999999999999987653211                                        


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           +..|.++|.++.|+..|.+|+++ -|+++.+||..++....  
T Consensus       272 -------------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q--  312 (524)
T KOG0273|consen  272 -------------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ--  312 (524)
T ss_pred             -------------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE--
Confidence                                                 46889999999999999999999 59999999998665433  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.-|..+..++.|-.+  ..|++++.|+.|+|+.+.....    +.+            +.+|.++|.++.|+
T Consensus       313 ------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P----~~t------------~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  313 ------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP----VKT------------FIGHHGEVNALKWN  368 (524)
T ss_pred             ------eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc----cee------------eecccCceEEEEEC
Confidence                  34557777688999876  4799999999999998865443    333            55677999999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC---------CEEEEEeCCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSYSN  419 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg  419 (513)
                      |.|.+|++++| ++++||.... ......+..|...               |..+.|+|+|         ..+++++.|+
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASFDS  432 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeecCC
Confidence            99999999987 9999999885 7777888888754               4478888875         3788999999


Q ss_pred             cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287          420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  499 (513)
                      +|++||+..+ ..+.++..|..||++++|+|+|+++|+|+.||.|.+   |..... .......-.+.|..+.|+.+|+.
T Consensus       433 tV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i---ws~~~~-~l~~s~~~~~~Ifel~Wn~~G~k  507 (524)
T KOG0273|consen  433 TVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI---WSTKTG-KLVKSYQGTGGIFELCWNAAGDK  507 (524)
T ss_pred             eEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe---ccccch-heeEeecCCCeEEEEEEcCCCCE
Confidence            9999999988 445889999999999999999999999999999999   322211 11122223567999999999988


Q ss_pred             EE-EEcCCcEEEE
Q 010287          500 IA-CAASNSLYMY  511 (513)
Q Consensus       500 la-~~~~~~~~i~  511 (513)
                      |+ +.+++.+++.
T Consensus       508 l~~~~sd~~vcvl  520 (524)
T KOG0273|consen  508 LGACASDGSVCVL  520 (524)
T ss_pred             EEEEecCCCceEE
Confidence            87 5567766654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-36  Score=269.70  Aligned_cols=330  Identities=16%  Similarity=0.227  Sum_probs=267.2

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|++.|.++.|+|...+++++-.+|.|.|||.++...+                       +.+.-.+          
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-----------------------ksfeV~~----------   55 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-----------------------KSFEVSE----------   55 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee-----------------------eeeeecc----------
Confidence            4458999999999999999999999999999998776642                       3444344          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        -+|.+..|.+  ..+.+++|+.|..||||+..+++....                                       
T Consensus        56 --~PvRa~kfia--RknWiv~GsDD~~IrVfnynt~ekV~~---------------------------------------   92 (794)
T KOG0276|consen   56 --VPVRAAKFIA--RKNWIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------   92 (794)
T ss_pred             --cchhhheeee--ccceEEEecCCceEEEEecccceeeEE---------------------------------------
Confidence              6788899976  445899999999999999998874443                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           +.+|.+-|++++.+|...+++++ +|-+|++||.+..-.+.+ 
T Consensus        93 -------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-  134 (794)
T KOG0276|consen   93 -------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-  134 (794)
T ss_pred             -------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-
Confidence                                                 36888999999999999999998 799999999987665544 


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+++|...|.+++|+|.+++.|++++.|++|++|.+.+...    ..+            +.+|...|+|+.+-
T Consensus       135 ------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfT------------l~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  135 ------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFT------------LEGHEKGVNCVDYY  192 (794)
T ss_pred             ------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----cee------------eeccccCcceEEec
Confidence                  67999999999999999989999999999999999977554    344            44566889999998


Q ss_pred             e--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          350 R--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       350 p--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      +  |..+|++|+| .+++|||.++ ..+++++.+|...+               ..+.|+|.-.++++|+.||+++||+.
T Consensus       193 ~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  193 TGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             cCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecC
Confidence            7  4579999886 9999999997 89999999999874               48999999999999999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc--ccCC-------------------------
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--DANG-------------------------  479 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~-------------------------  479 (513)
                      .+. +...++......+++++..+..+.++.|...|.|.+.-+.+....  ...+                         
T Consensus       257 ~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~  335 (794)
T KOG0276|consen  257 KTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVT  335 (794)
T ss_pred             cce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCccccc
Confidence            887 444777777888999999999999999999998877111110000  0000                         


Q ss_pred             ---------cccc-ccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          480 ---------NAFD-FSMKLLHLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       480 ---------~~~~-~~~~i~~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                               +.++ ..--...++-||+|+++++++++-.+||.|
T Consensus       336 DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa  379 (794)
T KOG0276|consen  336 DGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA  379 (794)
T ss_pred             CCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence                     0000 011235678899999999999999999975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.8e-36  Score=245.09  Aligned_cols=287  Identities=18%  Similarity=0.276  Sum_probs=232.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|++.|..+.|+|+|.+||+|+.|..|.+|++.+...                      ....+.+|.         
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------   90 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------   90 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc---------
Confidence            4568999999999999999999999999999999765443                      224467898         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ++|..+.|  ..|++.+++++.|++++.||+++|+....                                      
T Consensus        91 ---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--------------------------------------  127 (338)
T KOG0265|consen   91 ---GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK--------------------------------------  127 (338)
T ss_pred             ---ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh--------------------------------------
Confidence               99999999  55888999999999999999999986543                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-E-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~  267 (513)
                                                            ..+|..-|+++.-+.-|..++. + +|+++++||+++.... 
T Consensus       128 --------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-  168 (338)
T KOG0265|consen  128 --------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-  168 (338)
T ss_pred             --------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-
Confidence                                                  2466666777775555555554 5 6999999999955433 


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      +        .......++++.|..++ ..+.+|+-|+.|++||++.+..    .++            +.||...|+.+.
T Consensus       169 ~--------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~~------------lsGh~DtIt~ls  223 (338)
T KOG0265|consen  169 K--------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LYT------------LSGHADTITGLS  223 (338)
T ss_pred             h--------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eEE------------eecccCceeeEE
Confidence            1        12235678999999998 8899999999999999988765    344            455668899999


Q ss_pred             EeecCCEEEEEe-CCeEEEEEccC---CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          348 FARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       348 ~sp~~~~l~~~~-~~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      .+|+|.++.+-+ |.++++||++.   ..+.+..+.++...-.          . ....++|+|++..+.+|+.|..+++
T Consensus       224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe----------k-nlL~cswsp~~~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE----------K-NLLKCSWSPNGTKITAGSADRFVYV  292 (338)
T ss_pred             eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh----------h-hcceeeccCCCCccccccccceEEE
Confidence            999999999976 59999999984   1233566666553210          0 0247899999999999999999999


Q ss_pred             EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ||.... ..+..+.+|...|..+.|.|...+|.+++.|..|.+
T Consensus       293 wd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  293 WDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             eecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            998865 566899999999999999999999999999999998

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-35  Score=238.35  Aligned_cols=293  Identities=18%  Similarity=0.236  Sum_probs=227.0

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +...+.+|+            +.|+.++-.+. +...+++++.|+++.+|++.......                     
T Consensus         7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~---------------------   52 (315)
T KOG0279|consen    7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKY---------------------   52 (315)
T ss_pred             eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCcccc---------------------
Confidence            455688999            88999999765 45689999999999999997652111                     


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                       +.+.+ .+.+|...|..+..+++|++.+++ 
T Consensus        53 -------------------------------------------------G~~~r-~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen   53 -------------------------------------------------GVPVR-RLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             -------------------------------------------------Cceee-eeeccceEecceEEccCCceEEecc
Confidence                                                             11122 257899999999999999999999 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|+++++||+.+++...        .+.+|...|.+++|++|. +.+++|+.|.+|++|+......     .+...    
T Consensus        83 wD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck-----~t~~~----  144 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK-----YTIHE----  144 (315)
T ss_pred             ccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE-----EEEec----
Confidence            69999999999875443        568999999999999998 9999999999999999865432     11111    


Q ss_pred             CCccccccccccEEEEEEeec--CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          331 GTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                            ..+.+.|.|+.|+|+  ..+|++++ |++|++||+++ .+....+.+|.+.               ++.+.+||
T Consensus       145 ------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~---------------v~t~~vSp  202 (315)
T KOG0279|consen  145 ------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGY---------------VNTVTVSP  202 (315)
T ss_pred             ------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhcccccccc---------------EEEEEECC
Confidence                  112479999999997  67888877 59999999996 8888888898887               45899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccc-
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDF-  484 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~-  484 (513)
                      ||..+++|+.||.+.+||+..++.  .....+..+|.+++|+|+..+|+.+... .|+|  .+..... .++..+..+. 
T Consensus       203 DGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v-~~l~~d~~g~s  278 (315)
T KOG0279|consen  203 DGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVV-EELKLDGIGPS  278 (315)
T ss_pred             CCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhh-hhccccccccc
Confidence            999999999999999999998744  3445778899999999999888777544 4777  1111111 0111111111 


Q ss_pred             ----cCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          485 ----SMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       485 ----~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                          .-...+++|++||..|..+- ++.+.+|.
T Consensus       279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence                23457889999999998775 88888885

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.1e-36  Score=251.90  Aligned_cols=286  Identities=14%  Similarity=0.235  Sum_probs=239.1

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.++|.|+++.|..+++++|+.|++|+|||+.+++.                       ...+.||.          
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------------kltltGhi----------  193 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------------KLTLTGHI----------  193 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------EEeecchh----------
Confidence            458999999999999999999999999999999998874                       46788998          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|..+++++..  .++++++.|+.|+.||++..+.+..                                       
T Consensus       194 --~~vr~vavS~rH--pYlFs~gedk~VKCwDLe~nkvIR~---------------------------------------  230 (460)
T KOG0285|consen  194 --ETVRGVAVSKRH--PYLFSAGEDKQVKCWDLEYNKVIRH---------------------------------------  230 (460)
T ss_pred             --heeeeeeecccC--ceEEEecCCCeeEEEechhhhhHHH---------------------------------------
Confidence              889999997644  4999999999999999998765432                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           ..+|-..|.|++.+|.-..|++| .|.++++||+++.....  
T Consensus       231 -------------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~--  271 (460)
T KOG0285|consen  231 -------------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH--  271 (460)
T ss_pred             -------------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--
Confidence                                                 25888889999999999999998 79999999999766554  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|..+|.++.+.|.+ -.+++|+.|++|++||++.++..    .+            +..|+..+++++.+
T Consensus       272 ------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~t------------lt~hkksvral~lh  328 (460)
T KOG0285|consen  272 ------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----IT------------LTHHKKSVRALCLH  328 (460)
T ss_pred             ------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Ee------------eecccceeeEEecC
Confidence                  568999999999999988 68999999999999999998762    22            34466789999999


Q ss_pred             ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      |....+++++-..++-|++.. +..+..+.+|...               +..++...|+ ++++|+++|.+.+||.+++
T Consensus       329 P~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~i---------------intl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  329 PKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAI---------------INTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             CchhhhhccCCccceeccCCc-cchhhccccccce---------------eeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            999999998878999999996 8888888888776               3377777665 7889999999999999987


Q ss_pred             Cccc--eeec--C---CCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287          430 SAES--TTLE--A---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD  471 (513)
Q Consensus       430 ~~~~--~~~~--~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~  471 (513)
                      -.-.  ++..  +   ....|.+.+|...|..|++|..|..|++.+..+
T Consensus       392 ~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  392 HNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            3321  1111  1   234578889999999999999999999944333

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.8e-35  Score=254.04  Aligned_cols=278  Identities=19%  Similarity=0.317  Sum_probs=227.2

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .......|++++|+.+|.+||+|+.||.++||+..+...                        ..|.-|.          
T Consensus       231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------------~tl~~Hk----------  276 (524)
T KOG0273|consen  231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------------STLGQHK----------  276 (524)
T ss_pred             cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------------hhhhccC----------
Confidence            334567999999999999999999999999999765543                        5677888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ++|.++.|  +..|++|++++.|+++.+||..++...+.+.++                                   
T Consensus       277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-----------------------------------  317 (524)
T KOG0273|consen  277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-----------------------------------  317 (524)
T ss_pred             --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeec-----------------------------------
Confidence              99999999  568889999999999999999998877654433                                   


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                               ..+-..+.|-.+. .|+++ .|+.|+|+.+.......  
T Consensus       318 -----------------------------------------s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~--  353 (524)
T KOG0273|consen  318 -----------------------------------------SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVK--  353 (524)
T ss_pred             -----------------------------------------cCCccceEEecCc-eEeecCCCceEEEEEecCCCcce--
Confidence                                                     2333456776555 45555 79999999997544332  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            ++.+|...|.++.|+|.+ .+|++++.|++++||.........    .            +.+|...|..+.|+
T Consensus       354 ------t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~----~------------l~~Hskei~t~~ws  410 (524)
T KOG0273|consen  354 ------TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVH----D------------LQAHSKEIYTIKWS  410 (524)
T ss_pred             ------eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchh----h------------hhhhccceeeEeec
Confidence                  567899999999999999 999999999999999976554321    1            56677889999999


Q ss_pred             ecC---------CEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          350 RNG---------RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       350 p~~---------~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      |.|         ..+++++ +++|++||+.. +.++..+..|..+               |++++|+|+|+++++|+.||
T Consensus       411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~p---------------VysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  411 PTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEP---------------VYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             CCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCc---------------eEEEEecCCCcEEEecCCCC
Confidence            853         3566654 69999999997 9999999989876               56999999999999999999


Q ss_pred             cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|.+|+.+++ ++.+.+.+ ...|..++|+.+|.+|..+-.|+.+.+
T Consensus       475 ~V~iws~~~~-~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  475 CVHIWSTKTG-KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             eeEeccccch-heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence            9999999988 44444443 445889999999999998888888876

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=248.07  Aligned_cols=300  Identities=15%  Similarity=0.205  Sum_probs=252.1

Q ss_pred             ccccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCC
Q 010287            9 EAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP   88 (513)
Q Consensus         9 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (513)
                      .+.-++..|-+.-.    ......+|..+|+.+-|+|+-.++++++.|++|++||..+++.                   
T Consensus        86 ~~~~~~~~wipRp~----l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------------------  142 (406)
T KOG0295|consen   86 GSKRTPALWIPRPN----LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------------------  142 (406)
T ss_pred             cCccChhhcCCCCC----chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------------------
Confidence            33445666644321    1123567999999999999999999999999999999988874                   


Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                          ...++||+            +.|..|+|  +..|.++++++.|-.+++||.++.. .++.                
T Consensus       143 ----e~~LrGHt------------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~-~c~k----------------  187 (406)
T KOG0295|consen  143 ----ERSLRGHT------------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF-RCIK----------------  187 (406)
T ss_pred             ----hhhhhccc------------cceeEEEE--ecCccEEEecCCccchhheeHHHHH-HHHH----------------
Confidence                36789999            88999999  6678899999999999999998641 1110                


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                .+.+|...|.+++|-|.|.+++
T Consensus       188 ----------------------------------------------------------s~~gh~h~vS~V~f~P~gd~il  209 (406)
T KOG0295|consen  188 ----------------------------------------------------------SLIGHEHGVSSVFFLPLGDHIL  209 (406)
T ss_pred             ----------------------------------------------------------HhcCcccceeeEEEEecCCeee
Confidence                                                                      0357888899999999999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ++ .|.+|+.|++.++....        .+.+|...|..+..+.|| .++++++.|.++++|-+.+++..    ..    
T Consensus       210 S~srD~tik~We~~tg~cv~--------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~----  272 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDTGYCVK--------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AE----  272 (406)
T ss_pred             ecccccceeEEecccceeEE--------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hh----
Confidence            99 69999999999876553        678999999999999999 99999999999999999887541    11    


Q ss_pred             cCCCCccccccccccEEEEEEeec---------------CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          328 EAPGTRSFFTEIIASISDIKFARN---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~---------------~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                              +.+|.-+|.+++|.|.               ++++++++ |++|++||+.+ +.++.++.+|...+      
T Consensus       273 --------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV------  337 (406)
T KOG0295|consen  273 --------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV------  337 (406)
T ss_pred             --------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee------
Confidence                    4455567888888653               36888888 49999999998 99999999999884      


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                               ..++|+|.|+||+++.+|+++++||+++..+. .+++.|..-+..+.|..+..++++|+.|..+++
T Consensus       338 ---------r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  338 ---------RGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  402 (406)
T ss_pred             ---------eeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence                     48999999999999999999999999988544 788899999999999999999999999999988

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.1e-36  Score=274.68  Aligned_cols=265  Identities=20%  Similarity=0.314  Sum_probs=215.4

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-CccCccccc-----cc--cccCCCcceEeccccCCCCcccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEMM-----DY--SMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      -...++|..|++|+.+||.|-.|..|++|.+...+... ..-..+.+.     +.  +.....+-....++.||.     
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-----  451 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-----  451 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC-----
Confidence            35789999999999999999999999999988543210 000011111     11  111122222334477888     


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                             ++|....|+|  +.++|+++|.|+++|+|.+.+..+.-.                                  
T Consensus       452 -------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~----------------------------------  488 (707)
T KOG0263|consen  452 -------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVI----------------------------------  488 (707)
T ss_pred             -------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEE----------------------------------
Confidence                   9999999966  677999999999999999998764332                                  


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                                ..+|..+|+.+.|+|-|-+|+++ .|++.++|......
T Consensus       489 ------------------------------------------y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  489 ------------------------------------------YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             ------------------------------------------ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence                                                      25889999999999999999999 79999999987544


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      ..        +.+.+|.+.|.|+.|+|+. .++++||.|.+|++||+.+|..    ++.            |.||+++|.
T Consensus       527 Pl--------RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRi------------F~GH~~~V~  581 (707)
T KOG0263|consen  527 PL--------RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRI------------FTGHKGPVT  581 (707)
T ss_pred             ch--------hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEE------------ecCCCCceE
Confidence            32        2568999999999999998 9999999999999999999876    444            566779999


Q ss_pred             EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      +++|||+|++|++|++ +.|.+||+.+ +.++..+.+|.+.               |.++.|+.||..||+|+.|++|++
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~l  645 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVRL  645 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEEE
Confidence            9999999999999986 9999999997 8999999999665               459999999999999999999999


Q ss_pred             EecCCC
Q 010287          424 FGCSEG  429 (513)
Q Consensus       424 wd~~~~  429 (513)
                      ||+...
T Consensus       646 WD~~~~  651 (707)
T KOG0263|consen  646 WDLTKV  651 (707)
T ss_pred             EEchhh
Confidence            998754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=242.88  Aligned_cols=336  Identities=12%  Similarity=0.102  Sum_probs=262.1

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ..+..|+++|.+++.+|+.+++|||+.|..-.||++.++..                       ..++.+|+        
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK--------  106 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK--------  106 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC--------
Confidence            45778999999999999999999999999999999988774                       36788999        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          +.|+++.|  +.++.+|++|..+|.|+||+..++.....+.                                   
T Consensus       107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~-----------------------------------  145 (399)
T KOG0296|consen  107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-----------------------------------  145 (399)
T ss_pred             ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEee-----------------------------------
Confidence                99999999  6799999999999999999999987554321                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                               .....+.-+.|+|.+..|+.| .||.+.+|.+..+. ..
T Consensus       146 -----------------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~  183 (399)
T KOG0296|consen  146 -----------------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LC  183 (399)
T ss_pred             -----------------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc-ee
Confidence                                                     112447789999999999999 79999999998653 32


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      +       .+.+|+.++++=.|.|+| +.++++..||+|++||+.++...    ..+...+.           ....++.
T Consensus       184 k-------v~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~e~-----------~~~~~~~  240 (399)
T KOG0296|consen  184 K-------VMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQAEG-----------LELPCIS  240 (399)
T ss_pred             e-------EecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEeccccc-----------CcCCccc
Confidence            2       568999999999999999 99999999999999999998763    22222211           3567788


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      ++..+..++.|+. +.+++-+..+ ++.+....+... ...   ..+......|-.+.++..-.+.|+|+-||+|.|||+
T Consensus       241 ~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~~-~l~---~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  241 LNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTVP-ELK---PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL  315 (399)
T ss_pred             cccccceeEeccCCccEEEEcccc-ceEEEecCCCCc-ccc---ccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence            8888888888775 7777777665 655554442110 000   001111112225566666778899999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-C
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-S  505 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~  505 (513)
                      ...  .+...-.|..+|.++.|-+ ..+|++++.||.|+.   |+.....+.....+|...|.+++.+|+.+++++++ +
T Consensus       316 a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~---wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D  389 (399)
T KOG0296|consen  316 AAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ---WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD  389 (399)
T ss_pred             ccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEe---eeccccceEEEEecCchheeEEEEcCCCcEEEEecCC
Confidence            865  3345567888899999999 889999999999999   55544456677888999999999999999999888 6


Q ss_pred             CcEEEEe
Q 010287          506 NSLYMYY  512 (513)
Q Consensus       506 ~~~~i~~  512 (513)
                      +...||.
T Consensus       390 ~~a~VF~  396 (399)
T KOG0296|consen  390 NTALVFE  396 (399)
T ss_pred             CeEEEEe
Confidence            6666664

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-34  Score=263.82  Aligned_cols=421  Identities=14%  Similarity=0.167  Sum_probs=290.4

Q ss_pred             ccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           28 AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        28 ~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      ...+-+|..+|+++.|+..|..||+|+.|+.|.+||+-...-                       ...+.||+       
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-----------------------l~rL~GHk-------  149 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-----------------------LFRLRGHK-------  149 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-----------------------eEEeecch-------
Confidence            445678999999999999999999999999999999865442                       24578999       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC-------cccCc---------
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP-------IFGSH---------  171 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------  171 (513)
                           +.|+..-|.  .+.+.+++.+.|+.|++||+++..|..+...+......++...       .....         
T Consensus       150 -----d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~  222 (888)
T KOG0306|consen  150 -----DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED  222 (888)
T ss_pred             -----HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence                 889999994  4567899999999999999999877665433322210000000       00000         


Q ss_pred             ---ccccCceeccCCCcccc------ccCCCCCC----------------------------------------------
Q 010287          172 ---VSAIPKSYMANGGCGER------NFGCASND----------------------------------------------  196 (513)
Q Consensus       172 ---~~~~~~~~~~~g~~~~~------~~~~~~~~----------------------------------------------  196 (513)
                         .......+...|....-      ......++                                              
T Consensus       223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~  302 (888)
T KOG0306|consen  223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD  302 (888)
T ss_pred             ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence               00011111111111000      00000000                                              


Q ss_pred             -----------------------CCcCCC----------CCCceeceeeccCCcccccce---eeEeeccccCCeEEEEe
Q 010287          197 -----------------------SSFPPG----------GVSSLRLPVVTSQETNLVAGC---RRIYAHAHDYHINSISN  240 (513)
Q Consensus       197 -----------------------~~~~~~----------~~~~i~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~  240 (513)
                                             +.++++          .++++..+.+... ......+   ......+|...|+++++
T Consensus       303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCV  381 (888)
T ss_pred             hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEe
Confidence                                   000000          1112222222220 0000111   11234789999999999


Q ss_pred             ccCCCEEEEEcCCeEEEEEcCCCcceeee----------------------------cccCc----cccccccCCeEEEE
Q 010287          241 NSDGETFISADDLRINLWNLEISNQSFNI----------------------------VDVKP----ANMEDLTEVITSAE  288 (513)
Q Consensus       241 ~~~~~~l~s~~d~~i~vwd~~~~~~~~~~----------------------------~~~~~----~~~~~~~~~i~~~~  288 (513)
                      +.+...+++|..+.+++|+..+.+...++                            +++..    ..++.|.+.|.+++
T Consensus       382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~  461 (888)
T KOG0306|consen  382 SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS  461 (888)
T ss_pred             ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence            99999999998999999999865433221                            11110    23468999999999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEEcCCcccc-cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEE
Q 010287          289 FHPTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLW  366 (513)
Q Consensus       289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iw  366 (513)
                      .+||+ ..+++|+.|.+|++||...-... ....+.+..+...     .-.....|.|+.+||||++|+++- +.+|+||
T Consensus       462 ~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r-----tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  462 LSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR-----TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             ecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccce-----EEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            99999 99999999999999997532110 0000111111000     011235799999999999999986 5999999


Q ss_pred             EccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287          367 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ  446 (513)
Q Consensus       367 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  446 (513)
                      -+++ .+..-.+.+|.-+               |.++.+|||++.++|||.|.+|++|-+.-|.+. ..+-+|...|.++
T Consensus       536 flDt-lKFflsLYGHkLP---------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V  598 (888)
T KOG0306|consen  536 FLDT-LKFFLSLYGHKLP---------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDDSVMSV  598 (888)
T ss_pred             Eecc-eeeeeeecccccc---------------eeEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccCceeEE
Confidence            9997 7777888888876               569999999999999999999999999887444 7788999999999


Q ss_pred             EEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          447 VQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       447 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .|.|....+.++|.|+.|+-   |+-.+++......+|...|.+++.+|+|.++++++ |.++.+|.
T Consensus       599 ~F~P~~~~FFt~gKD~kvKq---WDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  599 QFLPKTHLFFTCGKDGKVKQ---WDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEcccceeEEEecCcceEEe---echhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999999999   55544456666778999999999999999999888 68888884

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-36  Score=257.39  Aligned_cols=278  Identities=18%  Similarity=0.264  Sum_probs=228.2

Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      ...|+.|+|.  ++|+.|++|+..|.+.+|+...-....                                         
T Consensus        96 kc~V~~v~Wt--PeGRRLltgs~SGEFtLWNg~~fnFEt-----------------------------------------  132 (464)
T KOG0284|consen   96 KCPVNVVRWT--PEGRRLLTGSQSGEFTLWNGTSFNFET-----------------------------------------  132 (464)
T ss_pred             ccceeeEEEc--CCCceeEeecccccEEEecCceeeHHH-----------------------------------------
Confidence            3679999994  588999999999999999974322111                                         


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         .+.+|..+|+++.|++++.++++| .+|.|++|+.+.....    
T Consensus       133 -----------------------------------ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk----  173 (464)
T KOG0284|consen  133 -----------------------------------ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK----  173 (464)
T ss_pred             -----------------------------------HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH----
Confidence                                               146899999999999999999999 6999999998743321    


Q ss_pred             ccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          271 DVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       271 ~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                           .+.. |...|++++|+|++ ..|++++.||+|+|||.+....    .+            .+.+|.-.|.+++|+
T Consensus       174 -----~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~ke----e~------------vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  174 -----IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKE----ER------------VLRGHGWDVKSVDWH  231 (464)
T ss_pred             -----HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCch----hh------------eeccCCCCcceeccC
Confidence                 2344 44899999999988 9999999999999999876553    11            256777899999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |.-.+|++|++ ..|++||.++ +.++.++..|...               |+.+.|+|++++|+++|.|..++++|+++
T Consensus       232 P~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt---------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT---------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CccceeEEccCCceeEeecCCC-cchhhhhhhccce---------------EEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            99999999875 9999999997 9999999888876               67999999999999999999999999996


Q ss_pred             CCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN  506 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~  506 (513)
                      . +.+.++.+|...+.++.|+|-.. +|.+|+.||.|......  ...++..-...|...|.+++|+|-|.+||+|+ +.
T Consensus       296 m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~--~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  296 M-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG--LEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             h-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc--ccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence            5 56689999999999999999755 67889999999981111  11123333456899999999999999999999 55


Q ss_pred             cEEEEe
Q 010287          507 SLYMYY  512 (513)
Q Consensus       507 ~~~i~~  512 (513)
                      .+++|.
T Consensus       373 t~rfw~  378 (464)
T KOG0284|consen  373 TVRFWT  378 (464)
T ss_pred             ceeeec
Confidence            566553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.3e-35  Score=231.87  Aligned_cols=238  Identities=13%  Similarity=0.197  Sum_probs=191.4

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +.|+.+...|+++.|+++..-.|++||+++.+....      .++++|...|+.+.|..+| +.+++|++||+++|||+|
T Consensus        41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv------~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV------ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCce------eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEecc
Confidence            458999999999999999889999999998775322      2778999999999999999 999999999999999999


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ....    .+.++             |.++|+++..+|+...|++|+. |.|++||+.. ......+..... .      
T Consensus       114 ~~~~----qR~~~-------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~liPe~~-~------  168 (311)
T KOG0315|consen  114 SLSC----QRNYQ-------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHELIPEDD-T------  168 (311)
T ss_pred             Cccc----chhcc-------------CCCCcceEEecCCcceEEeecCCCcEEEEEccC-CccccccCCCCC-c------
Confidence            8443    22222             3378999999999999999986 9999999985 333333322221 1      


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-----cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                             .|.++...|||.+|+.+...|..++|++.+...     .+..++.|..-+.++.+||++++||++|.|.+++|
T Consensus       169 -------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i  241 (311)
T KOG0315|consen  169 -------SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI  241 (311)
T ss_pred             -------ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence                   145899999999999999999999999876432     23567789999999999999999999999999999


Q ss_pred             ecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          467 VKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       467 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                         |....+ ..+....+|..-+..++||.|+.+|++|+ ++...+|.
T Consensus       242 ---wn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  242 ---WNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             ---EecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence               433322 23334456888999999999999999888 66667774

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-34  Score=246.09  Aligned_cols=285  Identities=18%  Similarity=0.322  Sum_probs=231.5

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|++.|.-+.||++|+|||+++.|.+..||.+....                    .+++..++.+|.          
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~----------  269 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS----------  269 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc----------
Confidence            45799999999999999999999999999999976543                    245677888998          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        .+|..|.|+|  |+++|++++.|..+++||+.+|.+....                                      
T Consensus       270 --~~V~yi~wSP--DdryLlaCg~~e~~~lwDv~tgd~~~~y--------------------------------------  307 (519)
T KOG0293|consen  270 --QPVSYIMWSP--DDRYLLACGFDEVLSLWDVDTGDLRHLY--------------------------------------  307 (519)
T ss_pred             --CceEEEEECC--CCCeEEecCchHheeeccCCcchhhhhc--------------------------------------
Confidence              9999999965  8889999999999999999998754321                                      


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           ..+|...+.+++|.|||..+++| .|+++..||+.. +.. . 
T Consensus       308 -------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~-~-  347 (519)
T KOG0293|consen  308 -------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NIL-G-  347 (519)
T ss_pred             -------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chh-h-
Confidence                                                 12344668899999999999999 699999999983 222 1 


Q ss_pred             cccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          270 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       270 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                            ..++ ....|.+++..+|| +.+++.+.|..|++|+..+....    .....             ..+|++++.
T Consensus       348 ------~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise-------------~~~its~~i  403 (519)
T KOG0293|consen  348 ------NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE-------------EQPITSFSI  403 (519)
T ss_pred             ------cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc-------------cCceeEEEE
Confidence                  1122 13558999999999 88888889999999998764431    11111             157999999


Q ss_pred             eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEec
Q 010287          349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~  426 (513)
                      |.+++++++.- +..+++||++ +.+.++.+.+|.....             +..-||-- +..++++|++|+.|+||+.
T Consensus       404 S~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr  469 (519)
T KOG0293|consen  404 SKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHR  469 (519)
T ss_pred             cCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEc
Confidence            99999998864 4899999999 4888899999886532             22456654 4479999999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~  466 (513)
                      .++ +++.++.+|...|++++|+|... .+|+++.||+|||
T Consensus       470 ~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  470 ISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             cCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence            988 66799999999999999999876 5799999999999

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.7e-34  Score=259.50  Aligned_cols=380  Identities=15%  Similarity=0.154  Sum_probs=287.0

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccC-CCCccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~  110 (513)
                      ....+.|++++.+||+++|++++..+.+++|++.+++.                       ...+.+ |+          
T Consensus        59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He----------  105 (775)
T KOG0319|consen   59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE----------  105 (775)
T ss_pred             ccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC----------
Confidence            34568899999999999999999999999999988764                       356666 77          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ++|.-++|.|  .+..+++|+.|+.++|||+..+.+...+..+..               ...++.|.|+-..     
T Consensus       106 --~Pvi~ma~~~--~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG---------------vVssl~F~~~~~~-----  161 (775)
T KOG0319|consen  106 --APVITMAFDP--TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG---------------VVSSLLFHPHWNR-----  161 (775)
T ss_pred             --CCeEEEEEcC--CCceEEeccccceEEEEEeeCCEEEEEecCCCc---------------eEEEEEeCCccch-----
Confidence              9999999965  667999999999999999999988877665431               2224455555442     


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce---
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS---  266 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~---  266 (513)
                           .+.+++..++.+++|++.....     +.. .+..|.+.|++++|++|+..++++ .|..+.+||+.+.+..   
T Consensus       162 -----~lL~sg~~D~~v~vwnl~~~~t-----cl~-~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l  230 (775)
T KOG0319|consen  162 -----WLLASGATDGTVRVWNLNDKRT-----CLH-TMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL  230 (775)
T ss_pred             -----hheeecCCCceEEEEEcccCch-----HHH-HHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence                 3458889999999999975443     111 146788889999999888777776 6888888887431000   


Q ss_pred             --------------------------------------------------------------------------eeecc-
Q 010287          267 --------------------------------------------------------------------------FNIVD-  271 (513)
Q Consensus       267 --------------------------------------------------------------------------~~~~~-  271 (513)
                                                                                                +.+++ 
T Consensus       231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence                                                                                      00000 


Q ss_pred             ---------------------------------------------cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          272 ---------------------------------------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       272 ---------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                                                                   ....-+.+|...|.++....+| .+|++|+.|.++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceE
Confidence                                                         0112346788888888866666 799999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEe-CCeEEEEEccCCCCCe-----e---
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPV-----A---  376 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~-~~~v~iwd~~~~~~~~-----~---  376 (513)
                      ++|.+.++....-.+.            ...+|.+.|.+++++..+ .++++++ |.++++|++.. .+.-     .   
T Consensus       390 ilWr~~~~~~~~~~~a------------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~  456 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVA------------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCR  456 (775)
T ss_pred             EEEEecCCcchhhhhh------------hhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhh
Confidence            9999844332111111            146788999999998755 5777766 59999999974 1111     1   


Q ss_pred             -eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCce
Q 010287          377 -TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR  455 (513)
Q Consensus       377 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  455 (513)
                       +...|..               +|.+++++|+.++++|||.|.+.+||+++.. ....++.+|...+.++.|+|..+.+
T Consensus       457 ~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~l  520 (775)
T KOG0319|consen  457 YTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLL  520 (775)
T ss_pred             HHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecccccee
Confidence             1122332               2459999999999999999999999999954 5668999999999999999999999


Q ss_pred             eeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          456 PLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       456 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      |++|.|.+|+|   |....+.-.....+|...|..++|-.+++.|++++ ++-+++|+
T Consensus       521 aT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  521 ATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             EeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            99999999999   76665455555667999999999999999988665 77788886

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=268.35  Aligned_cols=287  Identities=23%  Similarity=0.421  Sum_probs=236.9

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      |...|+|+.|+|+|+++++++.++.+++|+..+...                     .....+.+|.            .
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~  204 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R  204 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence            478999999999999999999999999999854441                     1224557788            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .|++++|+|  ++.++++++.|++|++||+.. +.+...                                         
T Consensus       205 ~v~~~~fs~--d~~~l~s~s~D~tiriwd~~~~~~~~~~-----------------------------------------  241 (456)
T KOG0266|consen  205 GVSDVAFSP--DGSYLLSGSDDKTLRIWDLKDDGRNLKT-----------------------------------------  241 (456)
T ss_pred             ceeeeEECC--CCcEEEEecCCceEEEeeccCCCeEEEE-----------------------------------------
Confidence            899999955  778999999999999999943 333222                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|...|++++|+|+++.+++| .|++|++||++++....    
T Consensus       242 -----------------------------------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~----  282 (456)
T KOG0266|consen  242 -----------------------------------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR----  282 (456)
T ss_pred             -----------------------------------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE----
Confidence                                               46999999999999999999999 79999999999855432    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|++++|++++ ++|++++.|+.|++||+.++...  ....+...+.         .. +++++.|+|+
T Consensus       283 ----~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~~-~~~~~~fsp~  345 (456)
T KOG0266|consen  283 ----KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------SA-PVTSVQFSPN  345 (456)
T ss_pred             ----eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------CC-ceeEEEECCC
Confidence                568999999999999999 99999999999999999988732  1222332221         11 5999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.+++++.. +.+++||+.. ...+..+.+|....            ..+++...++.+.++++|+.|+.|++|++.++ 
T Consensus       346 ~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-  411 (456)
T KOG0266|consen  346 GKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-  411 (456)
T ss_pred             CcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEeCCcc-
Confidence            999999886 8999999996 88888888887641            11335666889999999999999999999986 


Q ss_pred             ccceeecCC-CCceeEEEEcCCCCceeeec--CCCeEEE
Q 010287          431 AESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~  466 (513)
                      ..+..+++| ...+..+.++|...++++++  .|+.+++
T Consensus       412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~  450 (456)
T KOG0266|consen  412 GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL  450 (456)
T ss_pred             chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence            566888999 88899999999999999998  6787887

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.7e-33  Score=223.19  Aligned_cols=287  Identities=15%  Similarity=0.296  Sum_probs=222.3

Q ss_pred             cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-cCCCCccccccc
Q 010287           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS  108 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~  108 (513)
                      ..+|++.|..++|+|- |..||+++.|..|+||+...+.                    .+.+...+ .+|+        
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------   61 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------   61 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence            4478999999999998 9999999999999999976422                    12233333 4677        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|  .+++|+++|.|.++.||.-..++...+..                                   
T Consensus        62 ----rsVRsvAwsp--~g~~La~aSFD~t~~Iw~k~~~efecv~~-----------------------------------  100 (312)
T KOG0645|consen   62 ----RSVRSVAWSP--HGRYLASASFDATVVIWKKEDGEFECVAT-----------------------------------  100 (312)
T ss_pred             ----heeeeeeecC--CCcEEEEeeccceEEEeecCCCceeEEee-----------------------------------
Confidence                8899999966  77899999999999999887665444311                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             +.+|...|.|++|+++|.+|+++ .|+.|-+|...... .+
T Consensus       101 ---------------------------------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Ef  140 (312)
T KOG0645|consen  101 ---------------------------------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EF  140 (312)
T ss_pred             ---------------------------------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cE
Confidence                                                   56999999999999999999999 79999999988433 33


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      +..    ..+++|...|..+.|+|.. .+|++++.|.+|++|+-.... ......+            +.+|.+.|.+++
T Consensus       141 ec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-dW~c~~t------------l~g~~~TVW~~~  202 (312)
T KOG0645|consen  141 ECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-DWECVQT------------LDGHENTVWSLA  202 (312)
T ss_pred             EEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-CeeEEEE------------ecCccceEEEEE
Confidence            221    2568899999999999998 899999999999999866321 1122333            455667899999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |+|.|..|+++++ ++++||-... .-+    ..|...               +..+.|.  ...|++++.|+.|++|.-
T Consensus       203 F~~~G~rl~s~sdD~tv~Iw~~~~-~~~----~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  203 FDNIGSRLVSCSDDGTVSIWRLYT-DLS----GMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             ecCCCceEEEecCCcceEeeeecc-Ccc----hhcccc---------------eEeeeec--ccceEeccCCCEEEEEEe
Confidence            9999999999987 9999999653 110    012111               2367887  558999999999999976


Q ss_pred             CCCC--cc----ceeecCCCCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287          427 SEGS--AE----STTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~--~~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~  466 (513)
                      ....  ..    ...-..|...|+++++.|. ...|++|+.||.+++
T Consensus       261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence            6431  11    1233478889999999995 778999999999998

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=251.63  Aligned_cols=289  Identities=17%  Similarity=0.247  Sum_probs=235.4

Q ss_pred             cccccccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287           27 TAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        27 ~~~~~~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      ......+|+..|+++.|.| .+.+|++++.|+.|+||++-+..                      .+.++|.+|.     
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~-----  258 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR-----  258 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch-----
Confidence            4446779999999999999 79999999999999999987633                      2668899999     


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                             .+|.+++|  +.++..|++++.|+.|++||+++|++...+...                              
T Consensus       259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------------------------------  299 (503)
T KOG0282|consen  259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------------------------------  299 (503)
T ss_pred             -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC------------------------------
Confidence                   99999999  558899999999999999999999877653322                              


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCC
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEIS  263 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~  263 (513)
                                                                     ..+.|+.|+|++ +.|++| .|+.|+.||++++
T Consensus       300 -----------------------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  300 -----------------------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             -----------------------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence                                                           237899999987 777787 7999999999987


Q ss_pred             cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      +...        .+..|-+.|..+.|-+++ ..+++++.|+.+++|+.+..-.... +....              .-.+
T Consensus       333 kvvq--------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~-i~~~~--------------~hsm  388 (503)
T KOG0282|consen  333 KVVQ--------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN-IADPE--------------MHTM  388 (503)
T ss_pred             HHHH--------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh-hcchh--------------hccC
Confidence            7432        557788999999999999 9999999999999999887654211 11111              1247


Q ss_pred             EEEEEeecCCEEEEEe-CCeEEEEEccCC--CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          344 SDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~-~~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      .++..+|++.++++-+ +..|.+|.+...  ....+.+.+|.....             -..+.|||||++|++|+.||.
T Consensus       389 P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  389 PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCCcc
Confidence            7899999999999866 588999987632  223345666654311             126899999999999999999


Q ss_pred             EEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287          421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~  466 (513)
                      +.+||.++- ++...+++|..++..+.|.|... .+|+++.||.|++
T Consensus       456 v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  456 VNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI  501 (503)
T ss_pred             EEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence            999999987 66689999999999999999765 6899999999998

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.8e-33  Score=253.78  Aligned_cols=387  Identities=14%  Similarity=0.183  Sum_probs=286.7

Q ss_pred             cccccccccceecccccc-ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287           12 AQPLEWKFSQVFGERTAG-EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (513)
                      .....|++..  |+.... ........|+|+.-+|+..+||+|..||.|+||+.....                      
T Consensus        43 E~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~----------------------   98 (888)
T KOG0306|consen   43 EQVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE----------------------   98 (888)
T ss_pred             ccEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc----------------------
Confidence            3566798876  433221 122334699999999999999999999999999987554                      


Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                       ....|.||.            .+|+.+.|  +..|..|++|+.|+.|.+||+-..........+...            
T Consensus        99 -~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~------------  151 (888)
T KOG0306|consen   99 -ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS------------  151 (888)
T ss_pred             -eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHH------------
Confidence             335689999            99999999  668899999999999999999765543333322111            


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                         .+...|..+            .++.++.+.++.+++||+..+.      |..+ ...|.+.++++++.+  +.++++
T Consensus       152 ---iT~~~F~~~------------~~~lvS~sKDs~iK~WdL~tqh------Cf~T-hvd~r~Eiw~l~~~~--~~lvt~  207 (888)
T KOG0306|consen  152 ---ITQALFLNG------------DSFLVSVSKDSMIKFWDLETQH------CFET-HVDHRGEIWALVLDE--KLLVTA  207 (888)
T ss_pred             ---HhHHhccCC------------CeEEEEeccCceEEEEecccce------eeeE-EecccceEEEEEEec--ceEEEE
Confidence               111122222            2345888999999999997743      3333 357889999999988  566665


Q ss_pred             -cCCeEEEEEcCCCc-----------------------------------------------------------------
Q 010287          251 -DDLRINLWNLEISN-----------------------------------------------------------------  264 (513)
Q Consensus       251 -~d~~i~vwd~~~~~-----------------------------------------------------------------  264 (513)
                       .|+.+++|++....                                                                 
T Consensus       208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~  287 (888)
T KOG0306|consen  208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL  287 (888)
T ss_pred             ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence             79999999982100                                                                 


Q ss_pred             ----------------------------------------------ce----------eeec--c--cCc---------c
Q 010287          265 ----------------------------------------------QS----------FNIV--D--VKP---------A  275 (513)
Q Consensus       265 ----------------------------------------------~~----------~~~~--~--~~~---------~  275 (513)
                                                                    ..          ...+  +  .++         .
T Consensus       288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i  367 (888)
T KOG0306|consen  288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI  367 (888)
T ss_pred             HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence                                                          00          0000  0  001         2


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      .+.+|...|.+++++.+.  .++..+..+.+++|+..+.+.    ++++..              +.+.+..|-|.++++
T Consensus       368 ~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kc----iRTi~~--------------~y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKC----IRTITC--------------GYILASKFVPGDRYI  427 (888)
T ss_pred             eeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcce----eEEecc--------------ccEEEEEecCCCceE
Confidence            346788899999999885  444455678999999988776    555554              468999999999999


Q ss_pred             EEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC----
Q 010287          356 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS----  430 (513)
Q Consensus       356 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----  430 (513)
                      +.|.. |.+.+||+.+ ...+.+.+.|.+.               +++++.+||++.+++|+.|.+|++||+.--.    
T Consensus       428 v~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             EEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence            99998 9999999997 8888999999987               6799999999999999999999999975321    


Q ss_pred             -c-cceeec-----CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          431 -A-ESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       431 -~-~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                       + ....++     .-.+.|.++.+|||+++||.+--|.+++++--..   ..+-...++|.-||.+|..|||+++++++
T Consensus       492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~DSklivTg  568 (888)
T KOG0306|consen  492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPDSKLIVTG  568 (888)
T ss_pred             ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCCcCeEEec
Confidence             1 111111     2246788999999999999999999999922221   22445677899999999999999999988


Q ss_pred             c-CCcEEEEe
Q 010287          504 A-SNSLYMYY  512 (513)
Q Consensus       504 ~-~~~~~i~~  512 (513)
                      + |.++.||-
T Consensus       569 SADKnVKiWG  578 (888)
T KOG0306|consen  569 SADKNVKIWG  578 (888)
T ss_pred             cCCCceEEec
Confidence            8 88899983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.6e-35  Score=240.06  Aligned_cols=294  Identities=15%  Similarity=0.251  Sum_probs=240.6

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .++...-+.|..|||||+||++|+.||.|.+||..+++..    ..|           .|.-...|.-++          
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr----KDL-----------kYQAqd~fMMmd----------  263 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR----KDL-----------KYQAQDNFMMMD----------  263 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhh----hhh-----------hhhhhcceeecc----------
Confidence            3455678899999999999999999999999999888752    221           122222344455          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ++|.|+.|  +.|..++++|+.||.|++|.+++|.|...                                       
T Consensus       264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRr---------------------------------------  300 (508)
T KOG0275|consen  264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRR---------------------------------------  300 (508)
T ss_pred             --cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHH---------------------------------------
Confidence              89999999  66888999999999999999999876543                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                          |-.+|...|+|+.|+.|+..++++ .|.++++.-+..++.+.  
T Consensus       301 ------------------------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK--  342 (508)
T KOG0275|consen  301 ------------------------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK--  342 (508)
T ss_pred             ------------------------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH--
Confidence                                                235888999999999999999998 69999999999877553  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|.+.|+...|.++| ..+++++.||+|++|+..+.++    ..+|+...          ...+|.++..-
T Consensus       343 ------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~----------~d~~vnsv~~~  401 (508)
T KOG0275|consen  343 ------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLG----------TDYPVNSVILL  401 (508)
T ss_pred             ------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCC----------CcccceeEEEc
Confidence                  679999999999999999 9999999999999999998876    34444322          12578888888


Q ss_pred             e-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          350 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       350 p-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      | +-+.++++.. .+|+|.++.  ++.++.+.........            ..+++.||.|.++++.+.|+.++.|...
T Consensus       402 PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGd------------Fi~~~lSpkGewiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  402 PKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGD------------FINAILSPKGEWIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             CCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCc------------eEEEEecCCCcEEEEEccCcEEEEEEee
Confidence            8 5567777776 999999987  8888888654332221            2378999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++ .+..++..|...+-.++-+|..+.||+-++||.+++
T Consensus       468 sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL  505 (508)
T KOG0275|consen  468 SG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL  505 (508)
T ss_pred             cC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence            88 555788899888889999999999999999999888

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=239.34  Aligned_cols=278  Identities=17%  Similarity=0.240  Sum_probs=233.4

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .+|+.+-|+|  +-...++++.|++|++||..++++...                                         
T Consensus       109 ~~vt~v~~hp--~~~~v~~as~d~tikv~D~~tg~~e~~-----------------------------------------  145 (406)
T KOG0295|consen  109 SSVTRVIFHP--SEALVVSASEDATIKVFDTETGELERS-----------------------------------------  145 (406)
T ss_pred             cceeeeeecc--CceEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence            8899999987  444788889999999999999975321                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|.+.+..++|+..|++++++ .|-.+++||..+...+.+   
T Consensus       146 -----------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---  187 (406)
T KOG0295|consen  146 -----------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK---  187 (406)
T ss_pred             -----------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH---
Confidence                                               47898999999999999999999 688899999986544433   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.++.|-|.+ .++++++.|.+|+.|++.++..    +++|            .+|...|..++.+.|
T Consensus       188 ----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~c----v~t~------------~~h~ewvr~v~v~~D  246 (406)
T KOG0295|consen  188 ----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYC----VKTF------------PGHSEWVRMVRVNQD  246 (406)
T ss_pred             ----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccccee----EEec------------cCchHhEEEEEecCC
Confidence                567899999999999999 9999999999999999999876    4454            455578999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC---------------CCEEEEE
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVATG  415 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~  415 (513)
                      |.++++++. .+|++|-+.+ +++...++.|+..+.               +++|.|.               ++++.++
T Consensus       247 Gti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s~  310 (406)
T KOG0295|consen  247 GTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGSG  310 (406)
T ss_pred             eeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEEee
Confidence            999999875 9999999997 777888888887754               4444432               3689999


Q ss_pred             eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          416 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       416 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      +.|++|++||+.++ ..+.++.+|.+.|+.++|+|.|+||+++..|+++++   |+....+.......|..-++++.|+.
T Consensus       311 SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv---wdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV---WDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             cccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE---EEeccceeeeccCCCcceeEEEecCC
Confidence            99999999999999 555899999999999999999999999999999999   44443233333346888999999999


Q ss_pred             CCCEEEEEc-CCcEEEEe
Q 010287          496 SENSIACAA-SNSLYMYY  512 (513)
Q Consensus       496 ~~~~la~~~-~~~~~i~~  512 (513)
                      +..++++|+ +..+.+|-
T Consensus       387 ~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCceEEeccccceeeeee
Confidence            999999999 66777763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-32  Score=218.66  Aligned_cols=292  Identities=15%  Similarity=0.263  Sum_probs=223.4

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ....+++|.            +++..++|+|-. |..|++++.|+.||+|+...+....                     
T Consensus         6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~---------------------   51 (312)
T KOG0645|consen    6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWT---------------------   51 (312)
T ss_pred             eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEE---------------------
Confidence            345678888            899999998732 6689999999999999998532110                     


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                         ++...-.+|+..|++++|+|.|++|+++ 
T Consensus        52 ---------------------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen   52 ---------------------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             ---------------------------------------------------EEEeccccchheeeeeeecCCCcEEEEee
Confidence                                                               1111125788889999999999999999 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|.++.||.-..+.-..  +    ..+++|...|.|++|+++| ++||+++.|+.|-+|.+......       +     
T Consensus        81 FD~t~~Iw~k~~~efec--v----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-------e-----  141 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFEC--V----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-------E-----  141 (312)
T ss_pred             ccceEEEeecCCCceeE--E----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-------E-----
Confidence            59999999866433221  1    2679999999999999999 99999999999999998744321       1     


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC--CCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                       ...++.+|...|..+.|+|...+|++++. .+|++|+-..  .-.+.+++.+|...               |++++|++
T Consensus       142 -c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F~~  205 (312)
T KOG0645|consen  142 -CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAFDN  205 (312)
T ss_pred             -EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEecC
Confidence             11236778889999999999999999886 9999998763  12457788888764               67999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC-CCCcc--ccCC-cccc
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA-DNSAL--DANG-NAFD  483 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~--~~~~-~~~~  483 (513)
                      .|..|+++++|++++||...+.     ....|..+++.+.|.  ...||+++.|+.|++.+.. .+...  .+.. ....
T Consensus       206 ~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a  278 (312)
T KOG0645|consen  206 IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA  278 (312)
T ss_pred             CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence            9999999999999999986633     223467788889998  6789999999999993222 22111  1111 2335


Q ss_pred             ccCCeeEEEEeCC-CCEEEEEcCCcEEE
Q 010287          484 FSMKLLHLAWHPS-ENSIACAASNSLYM  510 (513)
Q Consensus       484 ~~~~i~~~~~sp~-~~~la~~~~~~~~i  510 (513)
                      |+..|++++|.|. .++|+++++|+++-
T Consensus       279 He~dVNsV~w~p~~~~~L~s~~DDG~v~  306 (312)
T KOG0645|consen  279 HEVDVNSVQWNPKVSNRLASGGDDGIVN  306 (312)
T ss_pred             cccccceEEEcCCCCCceeecCCCceEE
Confidence            8889999999995 77888888666543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-33  Score=258.50  Aligned_cols=300  Identities=16%  Similarity=0.221  Sum_probs=230.4

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..++|..|  +.++.++|.|-.|-.|++|.+...+++.......-...                     +          
T Consensus       379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~---------------------d----------  425 (707)
T KOG0263|consen  379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI---------------------D----------  425 (707)
T ss_pred             CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc---------------------c----------
Confidence            67899999  55888999999999999999987654443221110000                     0          


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                             ....+-...+.|...       ......+.+|.++|..+.|+|+.++|+++ .|+++++|.+.+....+    
T Consensus       426 -------~~sad~~~~~~D~~~-------~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V----  487 (707)
T KOG0263|consen  426 -------TESADVDVDMLDDDS-------SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV----  487 (707)
T ss_pred             -------ccccchhhhhccccC-------CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE----
Confidence                   000000011111111       11112268999999999999999999999 69999999999776554    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          ...+|..+|.++.|+|.| .+||+++.|++-++|.......    .+            ++.+|-+.|.|+.|+|+
T Consensus       488 ----~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----lR------------ifaghlsDV~cv~FHPN  546 (707)
T KOG0263|consen  488 ----IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----LR------------IFAGHLSDVDCVSFHPN  546 (707)
T ss_pred             ----EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----hh------------hhcccccccceEEECCc
Confidence                457999999999999999 9999999999999999766433    33            35667789999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      ..|+++|+. .+|++||+.+ +..++.+.+|...               |++++|||+|++|++|+.||.|.+||+.++ 
T Consensus       547 s~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-  609 (707)
T KOG0263|consen  547 SNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLANG-  609 (707)
T ss_pred             ccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCCC-
Confidence            999999875 9999999997 9999999999887               569999999999999999999999999987 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCc------------------------cccCCccccccC
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA------------------------LDANGNAFDFSM  486 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------------~~~~~~~~~~~~  486 (513)
                      .+...+.+|.+.+.++.|+.+|..||+|+.|..|++   |+...                        ....+....-..
T Consensus       610 ~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l---WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t  686 (707)
T KOG0263|consen  610 SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL---WDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT  686 (707)
T ss_pred             cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE---EEchhhcccccccccccccccccccCCCCcceeeeeeecCc
Confidence            566888999999999999999999999999999999   21110                        011222223456


Q ss_pred             CeeEEEEeCCCCEEEEEc
Q 010287          487 KLLHLAWHPSENSIACAA  504 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~  504 (513)
                      +|..+.|.-..-.|++|.
T Consensus       687 pv~~l~FtrrNl~L~~g~  704 (707)
T KOG0263|consen  687 PVVGLHFTRRNLLLAVGP  704 (707)
T ss_pred             eEEEEEEeccceeEEecc
Confidence            788888887776666553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-33  Score=218.76  Aligned_cols=276  Identities=18%  Similarity=0.265  Sum_probs=227.9

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|.+++|  +.+|++.++++.|++|++|+...+.++..                                         
T Consensus        18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt-----------------------------------------   54 (307)
T KOG0316|consen   18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT-----------------------------------------   54 (307)
T ss_pred             cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence            89999999  66899999999999999999988876543                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         ..+|...|..++.+.|...|++| .|..+.+||.++++...    
T Consensus        55 -----------------------------------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R----   95 (307)
T KOG0316|consen   55 -----------------------------------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR----   95 (307)
T ss_pred             -----------------------------------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee----
Confidence                                               25777789999999999999998 79999999999987653    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|+.+.|+.+. ..+++|+.|..+++||.|+...  +++..+..            ....|.++..+  
T Consensus        96 ----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde------------a~D~V~Si~v~--  154 (307)
T KOG0316|consen   96 ----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE------------AKDGVSSIDVA--  154 (307)
T ss_pred             ----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh------------hcCceeEEEec--
Confidence                678999999999999998 9999999999999999998653  22444433            33678888876  


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +..|++|+ ||+++.||++. +.....+.+|.                 |++++|++|++.++.++.|+++++.|-+++ 
T Consensus       155 ~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG-  215 (307)
T KOG0316|consen  155 EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG-  215 (307)
T ss_pred             ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh-
Confidence            67788877 59999999996 77666666655                 459999999999999999999999999988 


Q ss_pred             ccceeecCCCCceeE--EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCC-eeEEEEeCCCCEEEEEcCCc
Q 010287          431 AESTTLEASKNPMRR--QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAASNS  507 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~la~~~~~~  507 (513)
                      +++..+++|.+.-..  .+++.....+++|++||.|.+   |.+....+.....-++.. |.+++++|....+.++...+
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG  292 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence            677899999877654  567788889999999999999   554432233333334555 89999999999999999988


Q ss_pred             EEEEeC
Q 010287          508 LYMYYA  513 (513)
Q Consensus       508 ~~i~~~  513 (513)
                      ...|.+
T Consensus       293 ~~~~~~  298 (307)
T KOG0316|consen  293 DLFWYQ  298 (307)
T ss_pred             eeceee
Confidence            888863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-34  Score=228.99  Aligned_cols=281  Identities=14%  Similarity=0.204  Sum_probs=238.2

Q ss_pred             ccccccccEEEEEEcC---CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           30 EEVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      .=.+|+.+|-.++|||   +|-+|++++.||.-.+-+-.++..                       ..+|.||.      
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------------igtfeghk------   59 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------------IGTFEGHK------   59 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------------EEeeeccC------
Confidence            3458999999999986   688999999999888877666664                       36789999      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            ++|.....  +.+...-++++.|=+-++||.-+|.....                                   
T Consensus        60 ------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs-----------------------------------   96 (334)
T KOG0278|consen   60 ------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS-----------------------------------   96 (334)
T ss_pred             ------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh-----------------------------------
Confidence                  88998888  44656777889999999999988764332                                   


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                                ..|...|.+++|+.|.++|++| .+..+++||++..+.
T Consensus        97 ------------------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A  134 (334)
T KOG0278|consen   97 ------------------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA  134 (334)
T ss_pred             ------------------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence                                                      3566779999999999999998 699999999987665


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ..       ..+.+|.+.|..+.|...+ +.|++++.|+.||+||.+++..    +..+...             .+|++
T Consensus       135 pp-------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~VtS  189 (334)
T KOG0278|consen  135 PP-------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVTS  189 (334)
T ss_pred             Cc-------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCcc
Confidence            43       4778999999999999887 8899999999999999999886    3333332             57999


Q ss_pred             EEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          346 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       346 i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      +.++++|++|.++..+.|.+||..+ -.+++.+..+..                |.+..++|+...+++|+.|..++.||
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             eeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEEe
Confidence            9999999999998889999999997 777777765544                34788999999999999999999999


Q ss_pred             cCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          426 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ..++..+..-.++|.+||.++.|+|+|...|+||.||+|+|
T Consensus       253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl  293 (334)
T KOG0278|consen  253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL  293 (334)
T ss_pred             ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence            99996554446999999999999999999999999999999

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=230.58  Aligned_cols=294  Identities=14%  Similarity=0.257  Sum_probs=242.6

Q ss_pred             cCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCC
Q 010287           85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN  164 (513)
Q Consensus        85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
                      .||..+++...+++|.            +.|.|+++-|  .+..|++++.|++|+|||+.+++++..             
T Consensus       136 eWHapwKl~rVi~gHl------------gWVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lklt-------------  188 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHL------------GWVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKLT-------------  188 (460)
T ss_pred             cccCcceehhhhhhcc------------ceEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEEe-------------
Confidence            4788899999999999            9999999965  567999999999999999999986653             


Q ss_pred             CCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC
Q 010287          165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG  244 (513)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  244 (513)
                                                                                     +.+|...|..+++++-.
T Consensus       189 ---------------------------------------------------------------ltGhi~~vr~vavS~rH  205 (460)
T KOG0285|consen  189 ---------------------------------------------------------------LTGHIETVRGVAVSKRH  205 (460)
T ss_pred             ---------------------------------------------------------------ecchhheeeeeeecccC
Confidence                                                                           35777889999999999


Q ss_pred             CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287          245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  323 (513)
Q Consensus       245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  323 (513)
                      .+++++ .|+.|+.||++..+..        +.+.+|-+.|.|++.+|.- ..|++|+.|..+++||+|+...    +.+
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvI--------R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~----V~~  272 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVI--------RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS----VHV  272 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhH--------HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce----EEE
Confidence            999998 7999999999965533        2568899999999999998 8999999999999999998765    333


Q ss_pred             eccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                                  +.+|..+|.++.+.|-...+++|+ |++|++||++. ++...++..|...               +.+
T Consensus       273 ------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkks---------------vra  324 (460)
T KOG0285|consen  273 ------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKS---------------VRA  324 (460)
T ss_pred             ------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccce---------------eeE
Confidence                        566778999999999777788877 59999999996 8888888888765               448


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---ecCCCCCccc--c
Q 010287          403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALD--A  477 (513)
Q Consensus       403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~~~~~~~~~~--~  477 (513)
                      ++.+|....+++++.| .|+-|++..+. ....+.+|...++.+....|+ ++++|+.+|.+-+   ..+......+  .
T Consensus       325 l~lhP~e~~fASas~d-nik~w~~p~g~-f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v  401 (460)
T KOG0285|consen  325 LCLHPKENLFASASPD-NIKQWKLPEGE-FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV  401 (460)
T ss_pred             EecCCchhhhhccCCc-cceeccCCccc-hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccc
Confidence            9999999999999987 48999999884 445699999999999988764 6778888999888   3333333211  1


Q ss_pred             CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          478 NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       478 ~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      -...++-+..|.+.+|...+..|+++. +.+|.+|.
T Consensus       402 qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  402 QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             cCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            122334567899999999999999775 88888874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=225.26  Aligned_cols=286  Identities=17%  Similarity=0.270  Sum_probs=233.2

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +...+.+|+            +.|+.+.|+|  +|..|++++.|..|.+|++.... ....                   
T Consensus        39 p~m~l~gh~------------geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdc-eN~~-------------------   84 (338)
T KOG0265|consen   39 PIMLLPGHK------------GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDC-ENFW-------------------   84 (338)
T ss_pred             hhhhcCCCc------------ceEEEEEECC--CCCeEeecCCcceEEEEeccccc-ccee-------------------
Confidence            445578888            7899999976  88899999999999999976432 1110                   


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                             .+++|.+.|..+.|.+|+..++++ 
T Consensus        85 -------------------------------------------------------~lkgHsgAVM~l~~~~d~s~i~S~g  109 (338)
T KOG0265|consen   85 -------------------------------------------------------VLKGHSGAVMELHGMRDGSHILSCG  109 (338)
T ss_pred             -------------------------------------------------------eeccccceeEeeeeccCCCEEEEec
Confidence                                                                   146899999999999999999998 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|.+++.||.++++...        .+++|..-|+.+.-...|+.++.+++.|+++++||+|+...    +++++..   
T Consensus       110 tDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~~t~~~k---  174 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----IKTFENK---  174 (338)
T ss_pred             CCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----hhccccc---
Confidence            79999999999988664        56889999999997777878899999999999999998766    3444332   


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                                ..++++.|..++..+.+|. |+.|++||++. ......+.+|...               |+.+..+|+|
T Consensus       175 ----------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt---------------It~lsls~~g  228 (338)
T KOG0265|consen  175 ----------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT---------------ITGLSLSRYG  228 (338)
T ss_pred             ----------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------eeeEEeccCC
Confidence                      4699999999888888876 69999999996 8899999999987               6699999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCC---ccceeecCCCC----ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccc
Q 010287          410 GRVATGSYSNLFRVFGCSEGS---AESTTLEASKN----PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF  482 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  482 (513)
                      .++.+-+.|.++++||++..-   ..+..+.+|.-    ....+.|+|++.++..|+.|+.+.+   |+.....+....-
T Consensus       229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv---wd~~~r~~lyklp  305 (338)
T KOG0265|consen  229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV---WDTTSRRILYKLP  305 (338)
T ss_pred             CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEE---eecccccEEEEcC
Confidence            999999999999999987642   22345555432    2346789999999999999999999   5544334455566


Q ss_pred             cccCCeeEEEEeCCCCEEEEEc-CCcEEE
Q 010287          483 DFSMKLLHLAWHPSENSIACAA-SNSLYM  510 (513)
Q Consensus       483 ~~~~~i~~~~~sp~~~~la~~~-~~~~~i  510 (513)
                      +|.+.|++++|+|...+|.+++ +..+++
T Consensus       306 Gh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  306 GHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            7999999999999999998766 555543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-31  Score=243.88  Aligned_cols=281  Identities=23%  Similarity=0.385  Sum_probs=228.3

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.++|++++|+|++++|++++.+|.|++|++.+.+.                       ...+..|.          
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~----------   51 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT----------   51 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC----------
Confidence            347999999999999999999999999999999876542                       13455666          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..+..+.|+|  ++..+++++.|+.|++|++.+++....                                       
T Consensus        52 --~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------   88 (289)
T cd00200          52 --GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------   88 (289)
T ss_pred             --cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEE---------------------------------------
Confidence              7788999965  567899999999999999987532211                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~  269 (513)
                                                           +..|...+.++.|++++++++++. ++.|.+||+++.+...  
T Consensus        89 -------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--  129 (289)
T cd00200          89 -------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT--  129 (289)
T ss_pred             -------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--
Confidence                                                 235566799999999988888885 9999999998655433  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+..|...+.++.|+|++ .++++++.|+.|++||+++++.    ...+.            .|...+.++.|+
T Consensus       130 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~------------~~~~~i~~~~~~  186 (289)
T cd00200         130 ------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKC----VATLT------------GHTGEVNSVAFS  186 (289)
T ss_pred             ------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccccc----ceeEe------------cCccccceEEEC
Confidence                  345688899999999997 8888888899999999986654    22222            344679999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |+++.+++++ ++.|++||++. ++.+..+..+...               +.+++|+|++.++++++.||.|++|++.+
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            9998888876 59999999986 6666666555543               45899999998998888899999999987


Q ss_pred             CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + .....+..|...+..+.++++++++++++.|+.+++
T Consensus       251 ~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         251 G-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI  287 (289)
T ss_pred             c-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence            6 444667788899999999999999999999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-32  Score=251.53  Aligned_cols=294  Identities=16%  Similarity=0.216  Sum_probs=239.4

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      .+..|..++|+|...+|+++-..|.|++||..-+..                       ...|..|+            +
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------------i~rFdeHd------------G   52 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------------IDRFDEHD------------G   52 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------------HhhhhccC------------C
Confidence            357899999999999999999999999999776553                       36688898            9


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      +|..++|+|.  ..+|++|+.|..|+||+..+.++...                                          
T Consensus        53 pVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclft------------------------------------------   88 (1202)
T KOG0292|consen   53 PVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------   88 (1202)
T ss_pred             ccceeeecCC--CCeEEecCCccEEEEEecccceehhh------------------------------------------
Confidence            9999999874  45999999999999999998876543                                          


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        +.+|-+-|+.+.|++.-.+|+++ +|.+|+||+..+.+.. .    
T Consensus        89 ----------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-a----  129 (1202)
T KOG0292|consen   89 ----------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-A----  129 (1202)
T ss_pred             ----------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-E----
Confidence                                              46888999999999999999999 7999999999866544 3    


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce-------e------eccccCCCCccccccc
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-------L------FEEQEAPGTRSFFTEI  339 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~  339 (513)
                         .+.+|...|.|.+|+|.. .+++++|.|-+||+||+..-+.......       .      +-+..+.--+.++.||
T Consensus       130 ---vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  130 ---VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             ---EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence               568999999999999988 8999999999999999865322111000       0      1111122224567899


Q ss_pred             cccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          340 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       340 ~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      ...|+.++|+|.-.+|++|+| ..|++|.+.. .+  .+.+..+|...               |.++-|+|..+.+++.+
T Consensus       206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nn---------------Vssvlfhp~q~lIlSns  269 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNN---------------VSSVLFHPHQDLILSNS  269 (1202)
T ss_pred             ccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhcccCC---------------cceEEecCccceeEecC
Confidence            999999999999999999887 9999999874 33  34566777765               45999999999999999


Q ss_pred             CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|++|+|||+... ..++++....+..+.++.+|..+++|.|=..|.+..
T Consensus       270 EDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF  318 (1202)
T KOG0292|consen  270 EDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF  318 (1202)
T ss_pred             CCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence            9999999999876 444777777888999999999999998876666554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=256.63  Aligned_cols=282  Identities=19%  Similarity=0.332  Sum_probs=227.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.++.|+  ++|..+++++.|+.+++|+....+....                                         
T Consensus       160 ~sv~~~~fs--~~g~~l~~~~~~~~i~~~~~~~~~~~~~-----------------------------------------  196 (456)
T KOG0266|consen  160 PSVTCVDFS--PDGRALAAASSDGLIRIWKLEGIKSNLL-----------------------------------------  196 (456)
T ss_pred             CceEEEEEc--CCCCeEEEccCCCcEEEeecccccchhh-----------------------------------------
Confidence            779999995  4888999999999999999955442000                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                      + .+.+|...|.+++|+|++++++++ .|++|++||+........   
T Consensus       197 --------------------------------~-~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---  240 (456)
T KOG0266|consen  197 --------------------------------R-ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---  240 (456)
T ss_pred             --------------------------------c-cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE---
Confidence                                            0 025788889999999999999999 799999999954444443   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|++++|+|++ +++++|+.|++|++||+++++.    .+.            +.+|.+.|.+++|+++
T Consensus       241 ----~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~----~~~------------l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  241 ----TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC----VRK------------LKGHSDGISGLAFSPD  299 (456)
T ss_pred             ----EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE----EEe------------eeccCCceEEEEECCC
Confidence                568999999999999999 9999999999999999998765    333            4566689999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      +++|++++. +.|++||+.+ +.  ++..+..+....             .++.++|+|++++++++..|+.+++||+..
T Consensus       300 ~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  300 GNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRS  365 (456)
T ss_pred             CCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence            999999874 9999999996 55  345555554431             145899999999999999999999999997


Q ss_pred             CCccceeecCCCCc---eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEc
Q 010287          429 GSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       429 ~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~  504 (513)
                      + .....+.+|...   +.+...++.++++++|+.|+.|++   |............+| ...+..++|+|..+++++++
T Consensus       366 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~---~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  366 G-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV---WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             C-cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE---EeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            7 444666666654   444556889999999999999999   444433344455567 88999999999999999887


Q ss_pred             ---CCcEEEEe
Q 010287          505 ---SNSLYMYY  512 (513)
Q Consensus       505 ---~~~~~i~~  512 (513)
                         +..+.+|.
T Consensus       442 ~~~d~~~~~w~  452 (456)
T KOG0266|consen  442 FEGDGLIRLWK  452 (456)
T ss_pred             cCCCceEEEec
Confidence               77777774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5e-31  Score=269.49  Aligned_cols=305  Identities=21%  Similarity=0.319  Sum_probs=215.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ....|.+.|++++|+|+|++||+|+.|+.|+||+.......+..               .......+.+           
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~---------------~~~~~~~~~~-----------  531 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD---------------IHYPVVELAS-----------  531 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc---------------cccceEEecc-----------
Confidence            45569999999999999999999999999999997532110000               0000011111           


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                        ...|.+++|+|. .+.+|++++.||+|++||+.+++....                                      
T Consensus       532 --~~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------  570 (793)
T PLN00181        532 --RSKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------  570 (793)
T ss_pred             --cCceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEE--------------------------------------
Confidence              156899999763 356899999999999999987653321                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                            +.+|...|++++|+| ++.+|++| .|++|++||++++....
T Consensus       571 --------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        571 --------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             --------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence                                                  357888899999997 78899998 69999999998765433


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      .        +. +...+.++.|++..+.+|++|+.||.|++||+++....   ...            +.+|...|.++.
T Consensus       613 ~--------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~------------~~~h~~~V~~v~  668 (793)
T PLN00181        613 T--------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCT------------MIGHSKTVSYVR  668 (793)
T ss_pred             E--------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceE------------ecCCCCCEEEEE
Confidence            2        23 23578999996543389999999999999999865421   112            345668899999


Q ss_pred             EeecCCEEEEEe-CCeEEEEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          348 FARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       348 ~sp~~~~l~~~~-~~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      |. ++.+|++++ |+.|++||+...     ..++..+.+|...               +..++|+|++++|++|+.|+.|
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---------------i~~v~~s~~~~~lasgs~D~~v  732 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---------------KNFVGLSVSDGYIATGSETNEV  732 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC---------------eeEEEEcCCCCEEEEEeCCCEE
Confidence            97 677888876 599999999742     2456677777654               3478999999999999999999


Q ss_pred             EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEE
Q 010287          422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                      ++|+....... .          ...+......  .+       +             ....+...|.+++|+|++..|+
T Consensus       733 ~iw~~~~~~~~-~----------s~~~~~~~~~--~~-------~-------------~~~~~~~~V~~v~ws~~~~~lv  779 (793)
T PLN00181        733 FVYHKAFPMPV-L----------SYKFKTIDPV--SG-------L-------------EVDDASQFISSVCWRGQSSTLV  779 (793)
T ss_pred             EEEECCCCCce-E----------EEecccCCcc--cc-------c-------------ccCCCCcEEEEEEEcCCCCeEE
Confidence            99997654211 1          1111000000  00       0             0112356788888888888888


Q ss_pred             EEc-CCcEEEEe
Q 010287          502 CAA-SNSLYMYY  512 (513)
Q Consensus       502 ~~~-~~~~~i~~  512 (513)
                      +|+ ++.+.||.
T Consensus       780 a~~~dG~I~i~~  791 (793)
T PLN00181        780 AANSTGNIKILE  791 (793)
T ss_pred             EecCCCcEEEEe
Confidence            666 56677774

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.2e-32  Score=229.77  Aligned_cols=298  Identities=17%  Similarity=0.264  Sum_probs=235.2

Q ss_pred             cccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccc
Q 010287           25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (513)
Q Consensus        25 ~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  104 (513)
                      .+.+.+.+.|.++|+++...  +++|++|++||.++||+..+...                        ..+.||.    
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~------------------------~~~~Ght----  144 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI------------------------KTIVGHT----  144 (423)
T ss_pred             CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE------------------------EEEecCC----
Confidence            34555677899999999988  78999999999999999765443                        5678998    


Q ss_pred             ccccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287          105 YLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (513)
Q Consensus       105 ~~~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (513)
                              ++|.+++|.-.. ....|++++.|.++++|.++.++.+.....                             
T Consensus       145 --------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-----------------------------  187 (423)
T KOG0313|consen  145 --------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-----------------------------  187 (423)
T ss_pred             --------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-----------------------------
Confidence                    899988886422 234699999999999999987753321100                             


Q ss_pred             CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  262 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~  262 (513)
                                                                 ...||...|.+++..+++..+++| -|.+|.+|+..+
T Consensus       188 -------------------------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~  224 (423)
T KOG0313|consen  188 -------------------------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET  224 (423)
T ss_pred             -------------------------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence                                                       024999999999999999999999 599999999332


Q ss_pred             Cc-ceeeecc---------------cCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          263 SN-QSFNIVD---------------VKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       263 ~~-~~~~~~~---------------~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      .. ...+-..               -.| ..+.+|..+|.++.|.+.  ..+++++.|.+|+.||+.++.....    +.
T Consensus       225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~  298 (423)
T KOG0313|consen  225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT  298 (423)
T ss_pred             CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence            11 0000000               001 357899999999999994  6899999999999999999876322    22


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCC--CeeeeecccccccccccccccCCccceee
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                      +.             ..+.++.++|...+|++|+ |..+++||.+++..  ..+.+.+|...+               .+
T Consensus       299 ~~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ss  350 (423)
T KOG0313|consen  299 TN-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SS  350 (423)
T ss_pred             cC-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hh
Confidence            22             4689999999999999976 59999999987433  346778888874               48


Q ss_pred             EEEeCCCCE-EEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe
Q 010287          403 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV  467 (513)
Q Consensus       403 ~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  467 (513)
                      +.|+|...+ |++|+.|+++++||+++.+..+..+.+|...|.++.|. ++.++++|+.|..+++.
T Consensus       351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence            999997764 67999999999999998876779999999999999997 56799999999999993

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-32  Score=213.56  Aligned_cols=276  Identities=16%  Similarity=0.298  Sum_probs=227.5

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|.++|.++.|+-+|+|.++++.|.+|++|+...+.                       +.+++.+|.          
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------   59 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------   59 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC----------
Confidence            34678999999999999999999999999999976555                       447788888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|..++.  +.|+..|++++.|+.+.+||+.+|+....                                       
T Consensus        60 --~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------   96 (307)
T KOG0316|consen   60 --HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------   96 (307)
T ss_pred             --ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee---------------------------------------
Confidence              66888888  55778999999999999999999985442                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           +.+|...|+.+.|+.+...+++| -|.++++||.+......  
T Consensus        97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP--  137 (307)
T KOG0316|consen   97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP--  137 (307)
T ss_pred             -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--
Confidence                                                 46888999999999999999999 59999999998543211  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      +    +.+....+.|.++..+.   ..|++|+.||+++.||+|.|.+...    +              ...+|++++|+
T Consensus       138 i----Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD----y--------------~g~pit~vs~s  192 (307)
T KOG0316|consen  138 I----QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD----Y--------------FGHPITSVSFS  192 (307)
T ss_pred             c----chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehh----h--------------cCCcceeEEec
Confidence            0    24455678899998875   5699999999999999999886321    1              12579999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      +|++..++++ ++++++.|-.+ ++.+..+++|.....+             ..++++.....+++|++||.|++||+..
T Consensus       193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             CCCCEEEEeeccceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEecc
Confidence            9999998887 49999999997 9999999999876432             3678888888999999999999999997


Q ss_pred             CCccceeecCCCCc-eeEEEEcCCCCceeeecCC
Q 010287          429 GSAESTTLEASKNP-MRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       429 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d  461 (513)
                      . .....+..+..+ +..+.+.|....+.++...
T Consensus       259 ~-~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  259 E-TQISKLSVVSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             c-eeeeeeccCCceeEEeeecccCccceeEecCC
Confidence            7 455777777777 8899999987777666533

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.8e-32  Score=240.05  Aligned_cols=312  Identities=18%  Similarity=0.260  Sum_probs=234.0

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      +...+|+..|+++++.|.|..+++|+.|..|++||+.+.....                   +..++++..+        
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~-------------------~~fr~l~P~E--------  213 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM-------------------RSFRQLQPCE--------  213 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc-------------------hhhhccCccc--------
Confidence            3455789999999999999999999999999999987655321                   1112222222        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                         ...|++++|++  .+..|++.+..-..+|+|-...+.....+                                   
T Consensus       214 ---~h~i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~K-----------------------------------  253 (641)
T KOG0772|consen  214 ---THQINSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSK-----------------------------------  253 (641)
T ss_pred             ---ccccceeeecC--CCCeEEEEecCcceeEEccCCceeeeeec-----------------------------------
Confidence               14599999966  66688888888899999987765443322                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcce
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                      |...|-|+..             .++|...++|.+|+|. .+.|+++ .||++++||++..+..
T Consensus       254 ----------------GDQYI~Dm~n-------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  254 ----------------GDQYIRDMYN-------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             ----------------cchhhhhhhc-------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence                            1112222211             3789999999999996 4456666 7999999999987776


Q ss_pred             eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc--cEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SIS  344 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~  344 (513)
                      .+++..+  ...+..-+++.++|+|++ ++||+|+.||.|.+|+.+....  .....+           -..|..  .|+
T Consensus       305 ~qVik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v--~p~~~v-----------k~AH~~g~~It  368 (641)
T KOG0772|consen  305 LQVIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV--RPVMKV-----------KDAHLPGQDIT  368 (641)
T ss_pred             eeEEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc--ccceEe-----------eeccCCCCcee
Confidence            6665333  334566789999999999 8999999999999999855332  111111           123334  899


Q ss_pred             EEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC------
Q 010287          345 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------  417 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------  417 (513)
                      ||.||+||++|++-+ |+++++||++...+++....+-...             ++-+.++|||+.++|++|+.      
T Consensus       369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~  435 (641)
T KOG0772|consen  369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMT  435 (641)
T ss_pred             EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCC
Confidence            999999999999954 6999999999877777666544332             22358999999999999864      


Q ss_pred             CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       418 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|.+.+||..+. ...+.+......|..+.|+|.-+.+..|+.||.+++
T Consensus       436 ~g~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  436 AGTLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             CceEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence            478999998876 455777777889999999999999999999999998

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.7e-32  Score=226.37  Aligned_cols=304  Identities=17%  Similarity=0.236  Sum_probs=232.2

Q ss_pred             ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT   94 (513)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (513)
                      -.|+..+  |+ ...+..+|++.|+|+.||.+|.|||||+-+|.|+||+..++...                       .
T Consensus        89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------~  142 (399)
T KOG0296|consen   89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------W  142 (399)
T ss_pred             EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------E
Confidence            3477776  44 55678899999999999999999999999999999999877641                       1


Q ss_pred             cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                      .+..--            ..|.-++|+|  .+..|+.|+.||.+.+|.+.++...++                       
T Consensus       143 ~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv-----------------------  185 (399)
T KOG0296|consen  143 KLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKV-----------------------  185 (399)
T ss_pred             Eeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeE-----------------------
Confidence            111111            5588899987  566999999999999999987532221                       


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  253 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~  253 (513)
                                                                           +.+|..++++-.|.|+|+.++++ .||
T Consensus       186 -----------------------------------------------------~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  186 -----------------------------------------------------MSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             -----------------------------------------------------ecCCCCCcccccccCCCceEEEEecCc
Confidence                                                                 46888999999999999999999 799


Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      +|++|++.++.....+-      -. ......++.++..+ ..++.|+.++.+++-+..+++...    ...+ ..+...
T Consensus       213 ti~~Wn~ktg~p~~~~~------~~-e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-~~~~l~  279 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKIT------QA-EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-TVPELK  279 (399)
T ss_pred             eEEEEecCCCceeEEec------cc-ccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-CCcccc
Confidence            99999999987766542      11 13456788888888 899999999999999888877532    1111 111111


Q ss_pred             cccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287          334 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                      .........|.++.++..-.+.++|+ ||+|.|||+.. . .++..-.|+..               |+.+.|-+ ..+|
T Consensus       280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~---------------V~~l~w~~-t~~l  341 (399)
T KOG0296|consen  280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-S-TLRHICEHEDG---------------VTKLKWLN-TDYL  341 (399)
T ss_pred             ccchhhhhhhhhcccccccchhhcccccceEEEEeccc-c-hhheeccCCCc---------------eEEEEEcC-cchh
Confidence            11111223444455555666777777 59999999984 3 33444445443               56899998 7899


Q ss_pred             EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++++.+|.|+.||.++| ++..++.+|..+|..++++|+.++++++|.|+..++
T Consensus       342 ~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  342 LTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV  394 (399)
T ss_pred             eeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence            99999999999999999 666899999999999999999999999999999888

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.2e-32  Score=237.83  Aligned_cols=289  Identities=21%  Similarity=0.343  Sum_probs=227.5

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccC
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      ....+.||+            ..|+++.|.|. .+.+|++++.|+.|+||++.. +.+..                    
T Consensus       206 ~~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lr--------------------  252 (503)
T KOG0282|consen  206 LSHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLR--------------------  252 (503)
T ss_pred             heeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCcceeh--------------------
Confidence            345678888            99999999873 457899999999999999976 33322                    


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                             + ..+|..+|.+++|+++|..|+++
T Consensus       253 -------------------------------------------------------t-f~gH~k~Vrd~~~s~~g~~fLS~  276 (503)
T KOG0282|consen  253 -------------------------------------------------------T-FKGHRKPVRDASFNNCGTSFLSA  276 (503)
T ss_pred             -------------------------------------------------------h-hhcchhhhhhhhccccCCeeeee
Confidence                                                                   2 36899999999999999999998


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                       .|+.|++||.++++.....         .....++|+.|+|++++.|++|+.|+.|+.||+|+++....          
T Consensus       277 sfD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe----------  337 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE----------  337 (503)
T ss_pred             ecceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH----------
Confidence             6999999999998866432         12456889999999989999999999999999999987433          


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                            +..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..+++....+...              .+.++..+|+
T Consensus       338 ------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~h--------------smP~~~~~P~  396 (503)
T KOG0282|consen  338 ------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMH--------------TMPCLTLHPN  396 (503)
T ss_pred             ------HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhc--------------cCcceecCCC
Confidence                  3445578999999999999999877 9999999986 4444433221110              0228999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCc--cceeecCCCCc--eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF  484 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  484 (513)
                      +++++.-+.|+.|.+|.+...-+  ....+++|..+  -..+.|||||.+|++|+.||.+.+   |.-....+......|
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~---wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF---WDWKTTKLVSKLKAH  473 (503)
T ss_pred             CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE---eechhhhhhhccccC
Confidence            99999999999999998764322  22567787644  446789999999999999999999   443333455556678


Q ss_pred             cCCeeEEEEeCCC-CEEEEEc-CCcEEEEe
Q 010287          485 SMKLLHLAWHPSE-NSIACAA-SNSLYMYY  512 (513)
Q Consensus       485 ~~~i~~~~~sp~~-~~la~~~-~~~~~i~~  512 (513)
                      .+++..+.|||-. ..+|+++ ++.|.+|.
T Consensus       474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999995 4577777 77788874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-32  Score=250.88  Aligned_cols=272  Identities=19%  Similarity=0.317  Sum_probs=199.0

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCC-----------------------cc-----C-cccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-----------------------QR-----R-DLEMMDYS   83 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~-----------------------~~-----~-~~~~~~~~   83 (513)
                      .|.++|.++.||+||+|||+|+.||.|+||.+...+....                       ..     + .......+
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            6999999999999999999999999999999876111000                       00     0 00000000


Q ss_pred             ---ccC-----CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287           84 ---MSR-----HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (513)
Q Consensus        84 ---~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~  155 (513)
                         +..     .-.-+...+|.||.            +.|.+|.|+.  + .+|++++.|++||||++...+|..+    
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~----  405 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKV----  405 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheeccccc--C-CeeEeccccccEEeecCCCcceeeE----
Confidence               000     00112334577787            8899999953  4 5999999999999999988776553    


Q ss_pred             cCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe
Q 010287          156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI  235 (513)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v  235 (513)
                                                                                               ..|.+-|
T Consensus       406 -------------------------------------------------------------------------F~HndfV  412 (712)
T KOG0283|consen  406 -------------------------------------------------------------------------FSHNDFV  412 (712)
T ss_pred             -------------------------------------------------------------------------EecCCee
Confidence                                                                                     3788889


Q ss_pred             EEEEecc-CCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          236 NSISNNS-DGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       236 ~~~~~~~-~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      +|++|+| |.++|++|. |+.|+||++...+ ....        ..-..-|++++|.|+| +..+.|+.+|.+++|+...
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~W--------~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VVDW--------NDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCe-eEee--------hhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccC
Confidence            9999999 789999994 9999999998433 3221        2234779999999998 9999999999999999887


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecC--CEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      .+.............       -..|. .|+.+.|.|..  +.|++..|..|+|||.+. ..++..+++.......    
T Consensus       483 lk~~~~~~I~~~~~K-------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ----  549 (712)
T KOG0283|consen  483 LKLVSDFHIRLHNKK-------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ----  549 (712)
T ss_pred             CeEEEeeeEeeccCc-------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc----
Confidence            665322111111110       12233 79999999843  488888889999999985 7788888876654321    


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                               ....|+.||++|+++++|..|++|+...
T Consensus       550 ---------~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  550 ---------ISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ---------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                     2578999999999999999999999743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7e-31  Score=211.44  Aligned_cols=289  Identities=17%  Similarity=0.218  Sum_probs=226.6

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      .-..+|..+++-+.|+.+|.+|.+++.|.++.||-..+++.+                       -++.||+        
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl-----------------------Gty~GHt--------   52 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL-----------------------GTYDGHT--------   52 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee-----------------------eeecCCC--------
Confidence            345689999999999999999999999999999998777642                       6789999        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ++|.++..  +.+..++++++.|.++++||+++|+.+......                                 
T Consensus        53 ----GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---------------------------------   93 (327)
T KOG0643|consen   53 ----GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN---------------------------------   93 (327)
T ss_pred             ----ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC---------------------------------
Confidence                99999998  557789999999999999999999876543322                                 


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCC
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLEI  262 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~  262 (513)
                                                                  .+|..+.|+++|++++.+ +     .+.|.++|++.
T Consensus        94 --------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~  129 (327)
T KOG0643|consen   94 --------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD  129 (327)
T ss_pred             --------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence                                                        348889999999988875 2     46799999984


Q ss_pred             CcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          263 SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       263 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      .....  ..-.| ..+..+...++.+-|.|-+ ..|++|.+||.|..||++++.....   .            ...|..
T Consensus       130 ~~~~~--~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~---s------------~~~h~~  191 (327)
T KOG0643|consen  130 DSSDI--DSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVD---S------------DEEHSS  191 (327)
T ss_pred             Chhhh--cccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeee---c------------hhhhcc
Confidence            33110  00011 2445677899999999999 9999999999999999999864321   1            244667


Q ss_pred             cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      .|+.++++||..++++++. .+-++||+.+ -..++++.....                |.+.+++|....++.|+....
T Consensus       192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  192 KINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             ccccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCcee
Confidence            8999999999999999884 9999999996 777777765443                348899998888777664332


Q ss_pred             EEEEe--cCCC-----------CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          421 FRVFG--CSEG-----------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd--~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .-|=-  .+.+           .++.-.+++|.+|+++++|+|+|+..++|++||.||+
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence            22211  1111           1334567799999999999999999999999999999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-31  Score=238.69  Aligned_cols=278  Identities=18%  Similarity=0.242  Sum_probs=231.6

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|-++.|+|...  .++++-..|.|.|||.++......+.+.                                     
T Consensus        14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV~-------------------------------------   54 (794)
T KOG0276|consen   14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEVS-------------------------------------   54 (794)
T ss_pred             CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeeec-------------------------------------
Confidence            8899999988555  8889999999999999988765543322                                     


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                             ..+|++..|-+..+++++| +|..|++|+.++.++..    
T Consensus        55 ---------------------------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~----   91 (794)
T KOG0276|consen   55 ---------------------------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK----   91 (794)
T ss_pred             ---------------------------------------ccchhhheeeeccceEEEecCCceEEEEecccceeeE----
Confidence                                                   2347788888888999999 79999999999888664    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-  350 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-  350 (513)
                          .++.|.+.|++++.+|.. .++++++.|-.|++||....-.+   ..+            +.||...|++++|+| 
T Consensus        92 ----~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qt------------feGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   92 ----TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQT------------FEGHEHYVMQVAFNPK  151 (794)
T ss_pred             ----EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeE------------EcCcceEEEEEEecCC
Confidence                578999999999999998 78999999999999998765432   334            455667899999999 


Q ss_pred             cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC--CEEEEEeCCCcEEEEecC
Q 010287          351 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       351 ~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~  427 (513)
                      |...+++++ |++|+||.+.. ..+..++.+|+..+               .++++-+.|  .+|++|++|..|+|||..
T Consensus       152 D~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  152 DPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             CccceeeeeccccEEEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecc
Confidence            778888887 69999999996 88899999999774               488887644  699999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS  507 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~  507 (513)
                      +..+ .+++++|...|..+.|+|.-..+++|++||++||   |....+.+.....---++|.+++-.+.++.+|+|.|++
T Consensus       216 tk~C-V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri---Whs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  216 TKSC-VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI---WNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             hHHH-HHHhhcccccceEEEecCCCcEEEEecCCccEEE---ecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence            8744 4899999999999999999999999999999999   54443333322222357899999999999999999998


Q ss_pred             EEEEe
Q 010287          508 LYMYY  512 (513)
Q Consensus       508 ~~i~~  512 (513)
                      .++.+
T Consensus       292 ~i~v~  296 (794)
T KOG0276|consen  292 SVTVK  296 (794)
T ss_pred             cEEEE
Confidence            88765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.9e-30  Score=233.91  Aligned_cols=277  Identities=20%  Similarity=0.332  Sum_probs=219.9

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|.+++|+|  ++.++++++.||.+++|++.+++....                                         
T Consensus        10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~-----------------------------------------   46 (289)
T cd00200          10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT-----------------------------------------   46 (289)
T ss_pred             CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence            8899999965  677999999999999999987642211                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         ...|...+..+.|+++++.++++ .++.|++|++..++...    
T Consensus        47 -----------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~----   87 (289)
T cd00200          47 -----------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR----   87 (289)
T ss_pred             -----------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE----
Confidence                                               23566678899999999899988 69999999998654332    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+..|...+.++.|+|++ .++++++.|+.+.+||+++++.    ...+            ..|...+.++.|+|+
T Consensus        88 ----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----~~~~------------~~~~~~i~~~~~~~~  146 (289)
T cd00200          88 ----TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKC----LTTL------------RGHTDWVNSVAFSPD  146 (289)
T ss_pred             ----EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEE----EEEe------------ccCCCcEEEEEEcCc
Confidence                345678889999999997 8888888899999999986554    2222            234468999999999


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.++++++ ++.|++||++. .+.+..+..+...               +.++.|+|+++.+++++.|+.|++||+..+ 
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-  209 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-  209 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence            99999988 69999999985 6777777666543               448999999999999999999999999876 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY  509 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~  509 (513)
                      .....+..|..++..+.++|++.++++++.|+.+++.+...   .........|...|.+++|+|++++|++++ ++.+.
T Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC---ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence            44466668888999999999999999998899999932221   112222235788999999999999999877 55677


Q ss_pred             EEe
Q 010287          510 MYY  512 (513)
Q Consensus       510 i~~  512 (513)
                      +|.
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.7e-31  Score=217.50  Aligned_cols=312  Identities=16%  Similarity=0.226  Sum_probs=231.8

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|++++.+.+|||||.++|||+.|-.|+|.|++........++-..+     .....+-+..+|-.|.          
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-----~~qa~hPvIRTlYDH~----------  172 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-----DTQARHPVIRTLYDHV----------  172 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-----CcccCCceEeehhhcc----------
Confidence            4469999999999999999999999999999997632110000000000     0001112334444555          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|+++.|+|  ....|++++.|++|+++|+.....+..++.                                    
T Consensus       173 --devn~l~FHP--re~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------------  212 (430)
T KOG0640|consen  173 --DEVNDLDFHP--RETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------------  212 (430)
T ss_pred             --Ccccceeecc--hhheEEeccCCCeEEEEecccHHHHHHHHH------------------------------------
Confidence              8999999987  556999999999999999986543332221                                    


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                            .....+|.++.|+|.|.+|+.| +-.++++||+++-+....-
T Consensus       213 --------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  213 --------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             --------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence                                                  1223569999999999999999 7889999999976644332


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      .     .-..|.+.|+++.+++.+ ++.++++.||.|++||--++++    +.++....+          ...|.+..|.
T Consensus       255 n-----Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~----------gsevcSa~Ft  314 (430)
T KOG0640|consen  255 N-----PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHG----------GSEVCSAVFT  314 (430)
T ss_pred             C-----cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcC----------CceeeeEEEc
Confidence            1     336799999999999999 9999999999999999877665    444432211          1579999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS  427 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  427 (513)
                      .+++++++.+ |..+++|.+.+ ++++..+.+.......  .+        -+...|+....|++.-. ..+.+.-||.+
T Consensus       315 kn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq--~~--------rtqAvFNhtEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  315 KNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQ--KH--------RTQAVFNHTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             cCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccch--hh--------hhhhhhcCccceEEccccccCceeecccc
Confidence            9999999855 69999999997 8999988776322110  00        12456777777777554 45789999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +..+....--+|.++++.+.-+|.+..+.+|+.|...|+
T Consensus       384 tadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF  422 (430)
T KOG0640|consen  384 TADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF  422 (430)
T ss_pred             chhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence            885555555699999999999999999999999999998

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1e-30  Score=209.79  Aligned_cols=266  Identities=16%  Similarity=0.278  Sum_probs=211.6

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|  +.+|..|++++.|+++++|+++..+.....                                        
T Consensus        21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~----------------------------------------   58 (313)
T KOG1407|consen   21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL----------------------------------------   58 (313)
T ss_pred             hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh----------------------------------------
Confidence            88999999  668999999999999999999876322110                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                        ...+|.+.|-.++|+| ....|+++ .|.+|++||++.++....+.
T Consensus        59 ----------------------------------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~  104 (313)
T KOG1407|consen   59 ----------------------------------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE  104 (313)
T ss_pred             ----------------------------------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence                                              0257888899999988 45677777 79999999999888765431


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                               ....-.-+.|+|+| .+++.++.|..|...|.++.+.....    +..             -.+..++|+-
T Consensus       105 ---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~----~~~-------------~e~ne~~w~~  157 (313)
T KOG1407|consen  105 ---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE----QFK-------------FEVNEISWNN  157 (313)
T ss_pred             ---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehh----ccc-------------ceeeeeeecC
Confidence                     12333568899999 99999999999999999987653221    111             3477788987


Q ss_pred             cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      ++.+++..+. |.|.|..... -+++..++.|...               ..++.|+|+|+++|+|+.|-.+.+||+...
T Consensus       158 ~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~EL  221 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVDEL  221 (313)
T ss_pred             CCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChhHh
Confidence            7777776555 9999999985 8999999999854               348999999999999999999999999855


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS  505 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  505 (513)
                      -++ ..+..+..||+.+.|+.+|++||+||+|..|-|   ..|.+.+       .+.+.++-..++|||...+||-+.+
T Consensus       222 iC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~-------eI~~~~~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  222 ICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW-------EIPCEGPTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             hhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE-------EeeccCCceeEEecCCCceeeEEec
Confidence            333 677788999999999999999999999999999   2233333       2235889999999999999996653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6e-32  Score=225.55  Aligned_cols=268  Identities=13%  Similarity=0.267  Sum_probs=218.0

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ..+.|.|+.+..  ..+++|..|++|+|||..+..                       ....+.||+            +
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------G  238 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------G  238 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------C
Confidence            468999999864  479999999999999976544                       447789999            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.|+.|    +...+++|+.|.+|++||++++++..+                                          
T Consensus       239 SVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t------------------------------------------  272 (499)
T KOG0281|consen  239 SVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT------------------------------------------  272 (499)
T ss_pred             cEEeeec----cceEEEecCCCceEEEEeccCCchhhH------------------------------------------
Confidence            8999999    456899999999999999999975543                                          


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        +-.|...|..+.|+.  .+++++ .|.+|.+||+..... ..+.  
T Consensus       273 ----------------------------------lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-it~r--  313 (499)
T KOG0281|consen  273 ----------------------------------LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-ITLR--  313 (499)
T ss_pred             ----------------------------------HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-HHHH--
Confidence                                              347888899999975  478888 699999999986552 2111  


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                        ..+.+|...|+.+.|+.   +++++++.|.+|++|++.+++.    +++            +.+|...|.|+.+  .+
T Consensus       314 --rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef----vRt------------l~gHkRGIAClQY--r~  370 (499)
T KOG0281|consen  314 --RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF----VRT------------LNGHKRGIACLQY--RD  370 (499)
T ss_pred             --HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee----ehh------------hhcccccceehhc--cC
Confidence              25689999999999965   6999999999999999998876    444            4556678888877  48


Q ss_pred             CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      +++++|+. .+|++||+.. +.+++.+.+|+..+.               ++.|.  .+.+++|+.||+|++||+.++..
T Consensus       371 rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRFd--~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  371 RLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRFD--NKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             eEEEecCCCceEEEEeccc-cHHHHHHhchHHhhh---------------heeec--CceeeeccccceEEEEecccccC
Confidence            99999874 9999999997 999999999998744               77774  66899999999999999987643


Q ss_pred             c--------ceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          432 E--------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       432 ~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .        +.++..|.+.|..+.|  |...+++++.|..|-+
T Consensus       433 pra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi  473 (499)
T KOG0281|consen  433 PRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI  473 (499)
T ss_pred             CcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence            2        2344577888888887  4567888899999988

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=2.6e-31  Score=221.79  Aligned_cols=267  Identities=18%  Similarity=0.271  Sum_probs=214.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|+|+++    |+..+++|..|++|++||..+..+..+                                         
T Consensus       198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~-----------------------------------------  232 (499)
T KOG0281|consen  198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKI-----------------------------------------  232 (499)
T ss_pred             CceEEEEe----cchhhhcccccCceEEeccccHHHHHh-----------------------------------------
Confidence            77999999    556899999999999999987765432                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.||.+.|.|+.|..  +.+++| +|.+|++||.++++.+.    
T Consensus       233 -----------------------------------L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~----  271 (499)
T KOG0281|consen  233 -----------------------------------LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN----  271 (499)
T ss_pred             -----------------------------------hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh----
Confidence                                               469999999998864  588898 79999999999887653    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+-.|...|..+.|+.   .++++++.|.+|.+||+...... .            ....+.||.+.|+.+.|+  
T Consensus       272 ----tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i-t------------~rrVLvGHrAaVNvVdfd--  329 (499)
T KOG0281|consen  272 ----TLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI-T------------LRRVLVGHRAAVNVVDFD--  329 (499)
T ss_pred             ----HHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH-H------------HHHHHhhhhhheeeeccc--
Confidence                4567899999999986   58999999999999999765421 1            122367888999999996  


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      .+++++++ |.+|++|++.+ .+.++++.+|....                 .+.--.++++++|+.|.+|++||++.| 
T Consensus       330 ~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G-  390 (499)
T KOG0281|consen  330 DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECG-  390 (499)
T ss_pred             cceEEEecCCceEEEEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEecccc-
Confidence            55999976 49999999997 99999999998652                 234447889999999999999999998 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---------cCCccccccCCeeEEEEeCCCCEEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---------ANGNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                      ..+..+++|..-|+++.|  +.+.+++|+.||.|++   |++....         -.....+|+++|..+.|..- +.++
T Consensus       391 ~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikv---Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvs  464 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV---WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIIS  464 (499)
T ss_pred             HHHHHHhchHHhhhheee--cCceeeeccccceEEE---EecccccCCcccccchHHHhhhhccceeEEEeecce-EEEe
Confidence            455899999999999998  4668999999999999   3332111         12234578999999999642 3444


Q ss_pred             EEcCCcEEEEe
Q 010287          502 CAASNSLYMYY  512 (513)
Q Consensus       502 ~~~~~~~~i~~  512 (513)
                      +..++.|.||+
T Consensus       465 ssHddtILiWd  475 (499)
T KOG0281|consen  465 SSHDDTILIWD  475 (499)
T ss_pred             ccCCCeEEEEE
Confidence            55599999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.6e-29  Score=205.55  Aligned_cols=279  Identities=19%  Similarity=0.260  Sum_probs=215.0

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      -...|+++.|+++|.+|++++.|.+++|||..+++..                       ..+..++            -
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------------~ti~skk------------y   57 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------------KTINSKK------------Y   57 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------------eEeeccc------------c
Confidence            3579999999999999999999999999998877742                       3344444            5


Q ss_pred             cceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      .|..++|..  ....++.++.  |.+||.-++.+++...                                         
T Consensus        58 G~~~~~Fth--~~~~~i~sStk~d~tIryLsl~dNkylR-----------------------------------------   94 (311)
T KOG1446|consen   58 GVDLACFTH--HSNTVIHSSTKEDDTIRYLSLHDNKYLR-----------------------------------------   94 (311)
T ss_pred             cccEEEEec--CCceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence            688888853  3345555555  8899999998876544                                         


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         ++.||...|.+++.+|-+..++++ -|++|++||++..+...-+ 
T Consensus        95 -----------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-  138 (311)
T KOG1446|consen   95 -----------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-  138 (311)
T ss_pred             -----------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-
Confidence                                               257999999999999998999998 6999999999965543321 


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                               +...-..++|.|+| -++|++.....|++||+|.-..  .+..++....         +-....+.+.|||
T Consensus       139 ---------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS~  197 (311)
T KOG1446|consen  139 ---------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFSP  197 (311)
T ss_pred             ---------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEcC
Confidence                     12233568899999 8888888888999999987532  1233333221         1125689999999


Q ss_pred             cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      ||++|+.++. +.+++.|.-. +....++..+......-            ...+|+||++++++|+.||+|.+|+++++
T Consensus       198 dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  198 DGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            9999998887 9999999886 88888887776542100            26899999999999999999999999998


Q ss_pred             CccceeecC-CCCceeEEEEcCCCCceeeecCC
Q 010287          430 SAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       430 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      . ....+.+ +..++.++.|+|.-..+++++..
T Consensus       265 ~-~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~  296 (311)
T KOG1446|consen  265 K-KVAVLRGPNGGPVSCVRFNPRYAMFVSASSN  296 (311)
T ss_pred             c-EeeEecCCCCCCccccccCCceeeeeecCce
Confidence            4 4466666 78899999999998888877543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-30  Score=240.29  Aligned_cols=293  Identities=16%  Similarity=0.199  Sum_probs=229.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|-.++|+|+..  .++++-..|.|++||.+-+.+...                                         
T Consensus        10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli~r-----------------------------------------   46 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLIDR-----------------------------------------   46 (1202)
T ss_pred             ccccceecCCCCC--EEEEeecCceeeeehhhhhhHHhh-----------------------------------------
Confidence            7799999998665  899999999999999987764432                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +..|.++|+.++|+|++.+|++| +|-.|++|+..+.+..+    
T Consensus        47 -----------------------------------FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf----   87 (1202)
T KOG0292|consen   47 -----------------------------------FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF----   87 (1202)
T ss_pred             -----------------------------------hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh----
Confidence                                               36899999999999999999998 79999999998655544    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          ++.+|-+.|+.+.|++.- -+|+++|.|-+|+||+..++..    +..            ++||.-.|+|.+|+|.
T Consensus        88 ----tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~----iav------------ltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   88 ----TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC----IAV------------LTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             ----hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----EEE------------EecCceEEEeeccCCc
Confidence                678999999999999998 7999999999999999988876    333            5666688999999999


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeec----cccccccccccc-ccCCc---------cceeeEEEeCCCCEEEEEe
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQV----HEHLRPKLCDLY-ENDSI---------FDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~---------~~v~~~~~s~~~~~l~~~~  416 (513)
                      ...+++++ |.+|+|||+.- -+.-..-.+    +........+++ ..+++         ++|.-++|+|.-..+++|+
T Consensus       147 EDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             cceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence            99999988 59999999862 110000000    000000000111 11111         2466899999999999999


Q ss_pred             CCCcEEEEecCCCCc-cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          417 YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      +|..|++|.+...+. +..+..+|.++|.++.|+|...++++.|+|+.|++   |+..+..-......-.++-..++-||
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV---wDm~kRt~v~tfrrendRFW~laahP  302 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV---WDMTKRTSVQTFRRENDRFWILAAHP  302 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE---EecccccceeeeeccCCeEEEEEecC
Confidence            999999999875432 34677899999999999999999999999999999   65553222222222367889999999


Q ss_pred             CCCEEEEEcCCcEEEEe
Q 010287          496 SENSIACAASNSLYMYY  512 (513)
Q Consensus       496 ~~~~la~~~~~~~~i~~  512 (513)
                      ..+++|.|.|+|+.+|.
T Consensus       303 ~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  303 ELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             CcceeeeecCCceEEEE
Confidence            99999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=205.62  Aligned_cols=280  Identities=18%  Similarity=0.244  Sum_probs=217.1

Q ss_pred             EEEEEcCC-CCEEEeec-------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           39 SAIEFDKS-GDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        39 ~~v~~sp~-g~~latg~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .++.|||- ..+||++.       .+|++.|-++.+.+.+                       .+          ..+.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e----------~~s~d   58 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QE----------CQSYD   58 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EE----------EEeee
Confidence            67899995 44554443       3678999987644322                       11          22333


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      .++.+..++|+++.+ +.+++++.||++++||+.... ..                                        
T Consensus        59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s-~P----------------------------------------   96 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS-KP----------------------------------------   96 (311)
T ss_pred             cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC-cc----------------------------------------
Confidence            348899999998665 588899999999999953321 00                                        


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                       +. .++.|..+|.++.|++. .+.++++ -|++|++|+...++... 
T Consensus        97 ---------------------------------i~-~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~-  141 (311)
T KOG0277|consen   97 ---------------------------------IH-KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ-  141 (311)
T ss_pred             ---------------------------------hh-HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE-
Confidence                                             00 14688899999999984 5556666 59999999998666543 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             ++.+|...|...+|+|..+++|++++.|+..++||++....    ...+            ..|...+.++.|
T Consensus       142 -------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i------------~ah~~Eil~cdw  198 (311)
T KOG0277|consen  142 -------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSI------------EAHNSEILCCDW  198 (311)
T ss_pred             -------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEE------------EeccceeEeecc
Confidence                   67899999999999999889999999999999999986532    1223            334578999999


Q ss_pred             ee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEe
Q 010287          349 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFG  425 (513)
Q Consensus       349 sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd  425 (513)
                      +. +...+++|+ |+.|++||+++-..++..+.+|.-.               |..++|||.. ..|++++.|-+++|||
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---------------VRkvk~Sph~~~lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---------------VRKVKFSPHHASLLASASYDMTVRIWD  263 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceeecCCceE---------------EEEEecCcchhhHhhhccccceEEecc
Confidence            98 556777766 5999999999878888999888876               4489999965 5789999999999999


Q ss_pred             cCCCCccceeecCCCCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287          426 CSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~  466 (513)
                      ...+...+.+.+.|.+-+..+.|++- ..++|+++.|+.+.+
T Consensus       264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V  305 (311)
T KOG0277|consen  264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV  305 (311)
T ss_pred             cccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence            98765666788899999999999864 568999999999998

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.3e-30  Score=218.65  Aligned_cols=280  Identities=14%  Similarity=0.155  Sum_probs=215.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|.-+.|  +++|++||+++.|.+..+|++........                                         
T Consensus       225 dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl-----------------------------------------  261 (519)
T KOG0293|consen  225 DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKL-----------------------------------------  261 (519)
T ss_pred             CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceee-----------------------------------------
Confidence            88999999  56999999999999999999865421110                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                      ...+.+|..+|..+.|+||.++++++ .+..+.+||..++......  
T Consensus       262 --------------------------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--  307 (519)
T KOG0293|consen  262 --------------------------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--  307 (519)
T ss_pred             --------------------------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--
Confidence                                            11246899999999999999999998 5888999999988754321  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                           -.++...+.+++|.||+ ..|++|+.|+.|..||+....     ...|++-..           ..|.+++.++|
T Consensus       308 -----~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dlait~D  365 (519)
T KOG0293|consen  308 -----PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLAITYD  365 (519)
T ss_pred             -----ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEEEcCC
Confidence                 12356889999999999 899999999999999986433     344554433           36999999999


Q ss_pred             CCEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      |+++++. .|..|++|+... ......+..+..                +++.++|.|++++++.-.+..+++||++.. 
T Consensus       366 gk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~e~-  427 (519)
T KOG0293|consen  366 GKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLEEN-  427 (519)
T ss_pred             CcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecchh-
Confidence            9998874 569999999874 332223322222                568999999999999999999999999954 


Q ss_pred             ccceeecCCCCc---eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEc-C
Q 010287          431 AESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-S  505 (513)
Q Consensus       431 ~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~  505 (513)
                      .+...+.+|...   ++++.--.+..++++||+|+.|+|   |............+|+..|++++|+|... ++|+|+ |
T Consensus       428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD  504 (519)
T ss_pred             hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence            555777788654   333333456689999999999999   43333344456667999999999999965 578887 6


Q ss_pred             CcEEEEe
Q 010287          506 NSLYMYY  512 (513)
Q Consensus       506 ~~~~i~~  512 (513)
                      ++++||.
T Consensus       505 gtIRIWg  511 (519)
T KOG0293|consen  505 GTIRIWG  511 (519)
T ss_pred             CeEEEec
Confidence            7788884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=5.5e-29  Score=225.93  Aligned_cols=420  Identities=15%  Similarity=0.179  Sum_probs=283.7

Q ss_pred             cccccccccEEEEEEcCCCC---EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc--------ce--Eecc
Q 010287           29 GEEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE--------FR--YKTE   95 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~   95 (513)
                      .+..+|.++|.+++|..-+.   +||++|.|..||||.+.-........+.....  ..+..|.        |+  +..-
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t--~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT--TLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc--cccCCceeeeeeeEEEEEehhhh
Confidence            35779999999999987644   89999999999999976444222111110000  0000111        11  1123


Q ss_pred             ccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccccc
Q 010287           96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (513)
Q Consensus        96 ~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (513)
                      +.||+            +.|+++.|+|  .+..|++++.|+++.+|...+..-+....+........+.| .       -
T Consensus       263 l~GHe------------DWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-F-------~  320 (764)
T KOG1063|consen  263 LMGHE------------DWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-F-------W  320 (764)
T ss_pred             hcCcc------------cceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccccccc-e-------e
Confidence            45787            9999999966  66689999999999999987764444433332221100001 1       1


Q ss_pred             CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCe
Q 010287          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR  254 (513)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~  254 (513)
                      .-.|+|++..+            +.-+..|.+++|.......    -.......||.+.|.+++|+|.|++|++. .|-+
T Consensus       321 g~lw~~n~~~i------------i~~g~~Gg~hlWkt~d~~~----w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  321 GGLWSPNSNVI------------IAHGRTGGFHLWKTKDKTF----WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             eEEEcCCCCEE------------EEecccCcEEEEeccCccc----eeeccccccccccceeeeecCCCCEEEEeccccc
Confidence            33466666544            6667888999998221111    11222357999999999999999999997 6999


Q ss_pred             EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc------------------
Q 010287          255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL------------------  316 (513)
Q Consensus       255 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------  316 (513)
                      -+++-....+..  ..++  ..-+-|...++|+++-+.. ..|++|.....+|+|+....-.                  
T Consensus       385 TRlFa~wg~q~~--wHEi--aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p  459 (764)
T KOG1063|consen  385 TRLFARWGRQQE--WHEI--ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP  459 (764)
T ss_pred             eeeecccccccc--eeee--cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence            999976622221  1111  1234588889999998864 7899999999999998753110                  


Q ss_pred             ----------cccccee------------eccc---------cCCC-----------CccccccccccEEEEEEeecCCE
Q 010287          317 ----------CDTHSKL------------FEEQ---------EAPG-----------TRSFFTEIIASISDIKFARNGRH  354 (513)
Q Consensus       317 ----------~~~~~~~------------~~~~---------~~~~-----------~~~~~~~~~~~v~~i~~sp~~~~  354 (513)
                                ..+....            .+..         ..|.           ....+.||...|.+++.+|++.+
T Consensus       460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl  539 (764)
T KOG1063|consen  460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL  539 (764)
T ss_pred             cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence                      0000000            0000         0000           01124679999999999999999


Q ss_pred             EEEEeC------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          355 ILSRDY------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       355 l~~~~~------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      ++++..      ..|++|+..+ -...+.+.+|.-.               |+.++||||+++|++.+.|.++.+|....
T Consensus       540 iASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  540 IASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             EeehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeeec
Confidence            998531      6799999986 6677788888865               67999999999999999999999998765


Q ss_pred             CCcc---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc---ccC-CccccccCCeeEEEEeCCCC---
Q 010287          429 GSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DAN-GNAFDFSMKLLHLAWHPSEN---  498 (513)
Q Consensus       429 ~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~~sp~~~---  498 (513)
                      ....   ...++.|..-|.++.|+|++.+++++|.|..|++   |.....   ... .....++..|++++|.|--.   
T Consensus       604 ~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV---W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~  680 (764)
T KOG1063|consen  604 DIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV---WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK  680 (764)
T ss_pred             ccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE---EeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence            4222   2447899999999999999999999999999999   322211   111 14567899999999987632   


Q ss_pred             --EEEEEc-CCcEEEEe
Q 010287          499 --SIACAA-SNSLYMYY  512 (513)
Q Consensus       499 --~la~~~-~~~~~i~~  512 (513)
                        .+|+|- .+.|++|.
T Consensus       681 ~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  681 GDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             cceEEEEecccEEEEEe
Confidence              466776 55566664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=227.27  Aligned_cols=381  Identities=11%  Similarity=0.142  Sum_probs=284.4

Q ss_pred             EEEEEEcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        38 V~~v~~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      |+++. +|+  =+.|+.|+.+|.+.||++.+++.                       ..+++++.            ..|
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I  205 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI  205 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence            88775 676  46789999999999999998884                       36778887            889


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      +++.=+|--|  .++.|..+|+|.+++++.++....++...               ...+.++|..||..+         
T Consensus       206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~---------------g~VtslSFrtDG~p~---------  259 (910)
T KOG1539|consen  206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDW---------------GRVTSLSFRTDGNPL---------  259 (910)
T ss_pred             eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccc---------------cceeEEEeccCCCee---------
Confidence            9999877555  89999999999999999998877766542               233477888888865         


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                        .++++..|.+.+||+........      ....|.+.|....|.|....++++ .|+.+++|-.+++....+++    
T Consensus       260 --las~~~~G~m~~wDLe~kkl~~v------~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L----  327 (910)
T KOG1539|consen  260 --LASGRSNGDMAFWDLEKKKLINV------TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL----  327 (910)
T ss_pred             --EEeccCCceEEEEEcCCCeeeee------eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe----
Confidence              35666779999999987655322      235888889999999999999987 69999999777655443332    


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccc------------------------------------
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD------------------------------------  318 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------------  318 (513)
                      +...+|..+..++.|.......+.+++.|++.+.+++.......                                    
T Consensus       328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R  407 (910)
T KOG1539|consen  328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR  407 (910)
T ss_pred             eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence            23478999999999995444999999999999888765311100                                    


Q ss_pred             --------------ccceeeccccCCCCcc-----ccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287          319 --------------THSKLFEEQEAPGTRS-----FFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       319 --------------~~~~~~~~~~~~~~~~-----~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~  378 (513)
                                    ...++|.-.+......     .++.....+++++.++.|.+.+.|.. |.|.+|++++ +.....+
T Consensus       408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf  486 (910)
T KOG1539|consen  408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF  486 (910)
T ss_pred             hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc
Confidence                          0011111111110000     01112367899999999999999987 9999999996 6666666


Q ss_pred             ---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-------------------------
Q 010287          379 ---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-------------------------  430 (513)
Q Consensus       379 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------------------------  430 (513)
                         +.|...               |+.++...-++.+++++.+|.+.+||.....                         
T Consensus       487 ~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  487 GDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             ccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence               345544               5688888888999999999999999988651                         


Q ss_pred             ---------------ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          431 ---------------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       431 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                                     +....+.+|.+.++++.|||+|+||++++.|+.|++   |++.. ....+.+....+++++.|||
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt-~~lID~~~vd~~~~sls~SP  627 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPT-GTLIDGLLVDSPCTSLSFSP  627 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccC-cceeeeEecCCcceeeEECC
Confidence                           111223379999999999999999999999999999   65542 12223344578999999999


Q ss_pred             CCCEEEEEc--CCcEEEEe
Q 010287          496 SENSIACAA--SNSLYMYY  512 (513)
Q Consensus       496 ~~~~la~~~--~~~~~i~~  512 (513)
                      +|.+||++.  .+++++|.
T Consensus       628 ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCEEEEEEecCceEEEEE
Confidence            999999887  47999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.1e-31  Score=219.68  Aligned_cols=290  Identities=20%  Similarity=0.266  Sum_probs=224.7

Q ss_pred             ccceeccccccccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc
Q 010287           19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ   97 (513)
Q Consensus        19 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (513)
                      +-++|-.+......+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.....                       ...|.
T Consensus        50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~  106 (433)
T KOG0268|consen   50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK  106 (433)
T ss_pred             HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence            34555566666778999999999999986 7899999999999999876553                       35688


Q ss_pred             CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287           98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (513)
Q Consensus        98 ~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (513)
                      +|.            +.|..|++.  .  ..+++++.|++|+.|.++... ...  +                       
T Consensus       107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~t--i-----------------------  144 (433)
T KOG0268|consen  107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHT--I-----------------------  144 (433)
T ss_pred             ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-cee--e-----------------------
Confidence            898            889999994  2  579999999999999987631 110  0                       


Q ss_pred             eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEE
Q 010287          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINL  257 (513)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~v  257 (513)
                                                                          .-...+..+.-+..+..+++++ ..|-|
T Consensus       145 ----------------------------------------------------lg~s~~~gIdh~~~~~~FaTcG-e~i~I  171 (433)
T KOG0268|consen  145 ----------------------------------------------------LGKSVYLGIDHHRKNSVFATCG-EQIDI  171 (433)
T ss_pred             ----------------------------------------------------eccccccccccccccccccccC-ceeee
Confidence                                                                0012244455555566777764 35889


Q ss_pred             EEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccc
Q 010287          258 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  337 (513)
Q Consensus       258 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (513)
                      ||.+......        .+......|.++.|+|....+|++|..|+.|.+||+++.....+.+..+             
T Consensus       172 WD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-------------  230 (433)
T KOG0268|consen  172 WDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-------------  230 (433)
T ss_pred             cccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-------------
Confidence            9997555432        4566678899999999987889999999999999999988754433222             


Q ss_pred             cccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          338 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       338 ~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                          .-+.|+|+|.+-.+++|++ ..++.||++.-..++.....|...               |++++|||.|+-+++||
T Consensus       231 ----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  231 ----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             ----cccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhcccc
Confidence                2467999997767777775 999999999877788888877765               67999999999999999


Q ss_pred             CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|.+|+||....+.....-.......|.++.|+.|.+++++||.|+.|++
T Consensus       292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            99999999988763332222233456889999999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=198.15  Aligned_cols=277  Identities=16%  Similarity=0.252  Sum_probs=218.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      +..+|...|.+|+|+.+|..||+|+.|+++.+|++......                     ......+|.         
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~---------   64 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT---------   64 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence            45678999999999999999999999999999998765431                     223467888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|-.++|.|..+ ..|++++.|++|++||++.+++........                                 
T Consensus        65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~---------------------------------  107 (313)
T KOG1407|consen   65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKG---------------------------------  107 (313)
T ss_pred             ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccC---------------------------------
Confidence               8899999988554 589999999999999999988665433211                                 


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                                  .=.-+.|+|+|++++.+ .|..|.+.|.++.+...+
T Consensus       108 --------------------------------------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~  143 (313)
T KOG1407|consen  108 --------------------------------------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE  143 (313)
T ss_pred             --------------------------------------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence                                                        11247799999999999 699999999986553321


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                               ......+..+.|+-++ .+|+.....|.|.|......+.    +..            ++.|.....||.|
T Consensus       144 ---------~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkp----v~s------------i~AH~snCicI~f  197 (313)
T KOG1407|consen  144 ---------EQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKP----VQS------------IKAHPSNCICIEF  197 (313)
T ss_pred             ---------hcccceeeeeeecCCC-CEEEEecCCceEEEEecccccc----ccc------------cccCCcceEEEEE
Confidence                     2234567888999766 7777777789999988765443    222            4566688999999


Q ss_pred             eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|+|+++++|+ |..+.+||+.. .-+++.+..++.+               |..+.||.||++||+|++|..|-|=+.+
T Consensus       198 ~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwp---------------VRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  198 DPDGRYFATGSADALVSLWDVDE-LICERCISRLDWP---------------VRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             CCCCceEeeccccceeeccChhH-hhhheeeccccCc---------------eEEEEeccCcceeeccCccceEEeEecc
Confidence            99999999987 49999999984 7777888777765               4489999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      +|.+. ..+ .+..+...++|+|...+||.+..|
T Consensus       262 tGd~~-~eI-~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  262 TGDRV-WEI-PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cCCeE-EEe-eccCCceeEEecCCCceeeEEecC
Confidence            88443 222 356788899999999999987655

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=1.2e-28  Score=223.70  Aligned_cols=417  Identities=15%  Similarity=0.182  Sum_probs=262.7

Q ss_pred             ccccccccEEEEEEcCCCC---EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ...+|..+|+|+.|-|+.+   ++++|+.||+|++|.+.....                     .....+++|.      
T Consensus        49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---------------------~~i~~~~g~~------  101 (764)
T KOG1063|consen   49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---------------------IKIYTIQGHC------  101 (764)
T ss_pred             eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe---------------------EEEEeecCcc------
Confidence            4668999999999999877   899999999999999884332                     2445677777      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccC-CCc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-GGC  185 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  185 (513)
                              +.++++..  ......+.+.|+++.+||.+..+......+.+...           -..+..++..++ +..
T Consensus       102 --------~~~~cv~a--~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k-----------~~ipLcL~~~~~~~~~  160 (764)
T KOG1063|consen  102 --------KECVCVVA--RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK-----------EAIPLCLAALKNNKTF  160 (764)
T ss_pred             --------eeEEEEEe--eeeEEEeeccCceEEEeecCCCceeeehheehhhh-----------hHhhHHHhhhccCCcE
Confidence                    44555532  21122233789999999996655322222222211           012223344442 222


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC---EEEEE-cCCeEEEEEcC
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE---TFISA-DDLRINLWNLE  261 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~-~d~~i~vwd~~  261 (513)
                      +           .+.++.+..+.++.-...     .-.+...+.||.+.|.+++|...+.   +|+++ .|..|++|.+.
T Consensus       161 l-----------la~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~  224 (764)
T KOG1063|consen  161 L-----------LACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIV  224 (764)
T ss_pred             E-----------EEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence            1           122333334444332211     1122233689999999999987543   56666 69999999876


Q ss_pred             CCcce--------------------eeecccC--c-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc---
Q 010287          262 ISNQS--------------------FNIVDVK--P-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA---  315 (513)
Q Consensus       262 ~~~~~--------------------~~~~~~~--~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---  315 (513)
                      -....                    ..-+..+  - .-+.+|.+.|+++.|+|.+ ..|++++.|.++.+|......   
T Consensus       225 ~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW  303 (764)
T KOG1063|consen  225 LGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW  303 (764)
T ss_pred             ecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceE
Confidence            43300                    0000000  0 1245999999999999998 899999999999999765431   


Q ss_pred             --------ccc-----------------------ccceeecc--ccCCCCccccccccccEEEEEEeecCCEEEEEe-CC
Q 010287          316 --------LCD-----------------------THSKLFEE--QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM  361 (513)
Q Consensus       316 --------~~~-----------------------~~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~  361 (513)
                              ...                       .-.+.+..  ...-.......||...|.+++|+|.|++|++.+ |.
T Consensus       304 v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ  383 (764)
T KOG1063|consen  304 VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ  383 (764)
T ss_pred             EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccc
Confidence                    100                       00122221  111122345689999999999999999999854 55


Q ss_pred             eEEEEEcc--------------------C--------------CCCCeeeeecccccc----------------------
Q 010287          362 TLKLWDIN--------------------M--------------DSGPVATFQVHEHLR----------------------  385 (513)
Q Consensus       362 ~v~iwd~~--------------------~--------------~~~~~~~~~~~~~~~----------------------  385 (513)
                      +-++|-.-                    .              +.+.++.+..+....                      
T Consensus       384 TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~  463 (764)
T KOG1063|consen  384 TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN  463 (764)
T ss_pred             ceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence            55554321                    0              001111111100000                      


Q ss_pred             -------------------------------ccccccc---------------ccCC----ccceeeEEEeCCCCEEEEE
Q 010287          386 -------------------------------PKLCDLY---------------ENDS----IFDKFECCLSGDGGRVATG  415 (513)
Q Consensus       386 -------------------------------~~~~~~~---------------~~~~----~~~v~~~~~s~~~~~l~~~  415 (513)
                                                     ...+.+.               +...    -+.|++++.+|+++++|++
T Consensus       464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa  543 (764)
T KOG1063|consen  464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA  543 (764)
T ss_pred             cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence                                           0000000               0000    1368899999999999988


Q ss_pred             eCC-----CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCee
Q 010287          416 SYS-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLL  489 (513)
Q Consensus       416 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~  489 (513)
                      ...     -.|++|+..+.. ..+.+++|.-.|+.++|+||+++|++.+.|+++.+.+..+....+.... ...|+.-|.
T Consensus       544 CKS~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIW  622 (764)
T KOG1063|consen  544 CKSSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIW  622 (764)
T ss_pred             hhhCCccceEEEEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEE
Confidence            754     358999999874 4468999999999999999999999999999999933332222222222 346899999


Q ss_pred             EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          490 HLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       490 ~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +++|+|++.++|++| |..+++|.
T Consensus       623 dcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  623 DCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EcccCcccceeEEecCCceEEEEe
Confidence            999999999999999 66777774

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.7e-28  Score=198.67  Aligned_cols=279  Identities=17%  Similarity=0.228  Sum_probs=213.4

Q ss_pred             ccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        34 h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      -.+.|.+|+|||. ..+++.||.||+||+|+++.....                     .-+....|+            
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~------------   72 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD------------   72 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC------------
Confidence            3689999999994 667779999999999999864221                     012344555            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|.+++|  +.+|..+++++.|+.+++||+.+++...                                          
T Consensus        73 ~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~------------------------------------------  108 (347)
T KOG0647|consen   73 GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQ------------------------------------------  108 (347)
T ss_pred             CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeee------------------------------------------
Confidence            99999999  6688999999999999999999986443                                          


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC--EEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                         ...|..+|.++.|-+...  .|++| -|++|+.||.+.......+
T Consensus       109 -----------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen  109 -----------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             -----------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence                                               257888899999977544  88999 5999999999966654432


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                               ...+.+.++..-.   .+++.+..++.|.+|+++++....+      ..+.+        .+-.++||+..
T Consensus       154 ---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k------~~~Sp--------Lk~Q~R~va~f  207 (347)
T KOG0647|consen  154 ---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFK------RIESP--------LKWQTRCVACF  207 (347)
T ss_pred             ---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhh------hhcCc--------ccceeeEEEEE
Confidence                     1245566665543   4788889999999999987654221      11111        12468999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      +|....+.|+ +|.+.|..+.. .  +.-.+++.|..... ..     +.++.|.+++|+|.-..|+|++.||++.+||-
T Consensus       208 ~d~~~~alGsiEGrv~iq~id~-~~~~~nFtFkCHR~~~~-~~-----~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  208 QDKDGFALGSIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS-VN-----DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             ecCCceEeeeecceEEEEecCC-CCccCceeEEEeccCCC-CC-----CceEEecceEeecccceEEEecCCceEEEecc
Confidence            9888778777 49999999885 3  44566777775322 11     24667889999999999999999999999998


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ... ..+.+.+.|..||.+..|+.+|.++|.+
T Consensus       281 dar-~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  281 DAR-TKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             hhh-hhhhccCcCCCccceeEecCCCCEEEEE
Confidence            766 4457778899999999999999998765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=215.42  Aligned_cols=279  Identities=16%  Similarity=0.278  Sum_probs=218.6

Q ss_pred             cccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ...+.|++++|||... -+|+.+. -++.||+..+....                       +.+.-..           
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk-----------   68 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFK-----------   68 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhc-----------
Confidence            3458999999999743 3444443 37999997665431                       2222222           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       +.|.++.|  ..||.+|++|...|.|+++|+.+......                                        
T Consensus        69 -~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~----------------------------------------  105 (487)
T KOG0310|consen   69 -DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ----------------------------------------  105 (487)
T ss_pred             -cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH----------------------------------------
Confidence             77999999  45899999999999999999655322111                                        


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeee
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                          +.+|..++..+.|+|+++ .|++| +|+.+++||+.+...  ..
T Consensus       106 ------------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~  147 (487)
T KOG0310|consen  106 ------------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA  147 (487)
T ss_pred             ------------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE
Confidence                                                468889999999999655 55556 699999999986653  21


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|++.|.|.+|+|..+.++++|+.||.|++||++....   .+..+             .|..+|..+.+-
T Consensus       148 ------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el-------------nhg~pVe~vl~l  205 (487)
T KOG0310|consen  148 ------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL-------------NHGCPVESVLAL  205 (487)
T ss_pred             ------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe-------------cCCCceeeEEEc
Confidence                  67899999999999998778999999999999999987531   12332             244789999999


Q ss_pred             ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      |.|..+++++...|++||+..+++.+..+..|...               |+++++..++..|++|+-|+.+++||+.+.
T Consensus       206 psgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  206 PSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEEccce
Confidence            99999999998999999999766666666656655               679999999999999999999999997655


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       +....+ .-.+||.+++.+|++..++.|..||.+.+
T Consensus       271 -Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  271 -KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             -EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence             333333 34578999999999999999999999988

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.8e-30  Score=217.06  Aligned_cols=284  Identities=18%  Similarity=0.250  Sum_probs=223.7

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ..-.|...|..+.|-++...|++|+.|..|.+|++...+.                     .+...+.|..         
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~---------  219 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL---------  219 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC---------
Confidence            3446899999999999989999999999999999866552                     1334566666         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|+++.|  ..++.++++++.|+.+++|++...+....                                      
T Consensus       220 ---g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------  256 (459)
T KOG0288|consen  220 ---GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------  256 (459)
T ss_pred             ---CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh--------------------------------------
Confidence               78999999  66888999999999999999988764432                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|.+.|+++.|......+++| .|.+|++||+.......+
T Consensus       257 --------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  257 --------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             --------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence                                                  46899999999998877778888 699999999986443322


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      +       +  ..+.+..|+.++   ..+++|-.|+.|++||.++...    .+.....             +.|+++..
T Consensus       299 ~-------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~l  349 (459)
T KOG0288|consen  299 V-------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDL  349 (459)
T ss_pred             c-------c--ccccccceEecc---eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEee
Confidence            1       1  234456666653   6799999999999999998765    3333322             57999999


Q ss_pred             eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      ++++..+.+++ |.++.+.|+++ ......+......           +-.+.+.+.|||++.|+++|+.||.|+||++.
T Consensus       350 s~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  350 SMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             ccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            99999888876 59999999996 6666666544321           11234589999999999999999999999999


Q ss_pred             CCCccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +++.+ ..++....  .|.++.|+|.|..|++++.++.+.+
T Consensus       418 tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  418 TGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             CceEE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence            88444 45554444  5999999999999999999988877

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.4e-28  Score=207.83  Aligned_cols=300  Identities=17%  Similarity=0.219  Sum_probs=224.3

Q ss_pred             ccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       105 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                      |+.++.|.+.|.++.-.    +..+++++.||.+++||........                                  
T Consensus        98 pl~~~~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk~~~~----------------------------------  139 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGKSIKT----------------------------------  139 (423)
T ss_pred             ccccccchhhhhhhccc----CceEEEeecCCeeEEEecCCceEEE----------------------------------
Confidence            35566667888888873    4699999999999999987653222                                  


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEc
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNL  260 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~  260 (513)
                                                                 ..+|.++|.+++|...   ...|+++ .|.++++|.+
T Consensus       140 -------------------------------------------~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  140 -------------------------------------------IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             -------------------------------------------EecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence                                                       3588888988877432   3357777 7999999999


Q ss_pred             CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc---------cccceeeccccCCC
Q 010287          261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC---------DTHSKLFEEQEAPG  331 (513)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~  331 (513)
                      +.+.......    ..-.+|...|.++...+++ ..+++|+.|.++++|+..+....         .+..+.-+......
T Consensus       177 ~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  177 NVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             cCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            8776554332    1235999999999999999 99999999999999994321100         00001111112223


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                      +...+.+|..+|.++.|++ ...+++++ |.+|+.||+.+ +....++.+...                ++++..+|..+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ks----------------l~~i~~~~~~~  313 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKS----------------LNCISYSPLSK  313 (423)
T ss_pred             ceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccceeeeecCcc----------------eeEeecccccc
Confidence            4456789999999999997 56666766 69999999998 777666665543                34899999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCc--cceeecCCCCceeEEEEcCCCCc-eeeecCCCeEEEecCCCCCccc-cCCccccccC
Q 010287          411 RVATGSYSNLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRRVKGADNSALD-ANGNAFDFSM  486 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~  486 (513)
                      +|++|+.|..|++||++++.-  ..+.+.+|.+.|.++.|+|...+ |++|+.|+++++   |+..... -.....+|..
T Consensus       314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl---WDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL---WDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE---EEeccCCCcceeeccCCc
Confidence            999999999999999998643  34788899999999999998775 689999999999   4443222 2334557999


Q ss_pred             CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          487 KLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .|.++.|+..+ .|++|+ |+.++||.
T Consensus       391 Kvl~vdW~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  391 KVLSVDWNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             eEEEEeccCCc-eEEeccCcceEEEec
Confidence            99999999754 455554 99999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=6e-28  Score=194.64  Aligned_cols=286  Identities=15%  Similarity=0.196  Sum_probs=218.7

Q ss_pred             cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                      .++||+            .+++.|.|  +.+|.+|++++.|.+..||--.+|+..-.                       
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt-----------------------   47 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT-----------------------   47 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence            467888            99999999  66888999999999999998877753321                       


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  253 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~  253 (513)
                                                                           ..+|.+.|+|+..+.+.+.+++| .|.
T Consensus        48 -----------------------------------------------------y~GHtGavW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen   48 -----------------------------------------------------YDGHTGAVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             -----------------------------------------------------ecCCCceEEEEEecCCcceeeeccccc
Confidence                                                                 36999999999999999999999 799


Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-----CCcEEEEEcCCccc---ccccceeec
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSAL---CDTHSKLFE  325 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~---~~~~~~~~~  325 (513)
                      ++++||.++++++...         ....+|..+.|++++ ++++.+..     .+.|.++|++....   ...+...+ 
T Consensus        75 t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-  143 (327)
T KOG0643|consen   75 TAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-  143 (327)
T ss_pred             eeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-
Confidence            9999999999877543         246789999999999 77666544     46799999985331   11112222 


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                                 ..+...++.+-|+|-+++|++|.+ |.|.+||++++.+.+.....|...               |+.++
T Consensus       144 -----------~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q  197 (327)
T KOG0643|consen  144 -----------PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQ  197 (327)
T ss_pred             -----------cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------ccccc
Confidence                       223367999999999999999987 999999999855666666667654               45899


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-----ecCCCCCc-----
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNSA-----  474 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-----~~~~~~~~-----  474 (513)
                      +++|..++++++.|.+-++||..+.. .+.++ ....||++.+++|....++.|+--....+     +.+.-..+     
T Consensus       198 ~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i  275 (327)
T KOG0643|consen  198 FSRDRTYFITGSKDTTAKLVDVRTLE-VLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI  275 (327)
T ss_pred             ccCCcceEEecccCccceeeecccee-eEEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence            99999999999999999999998762 22232 34579999999999888877764433333     11111110     


Q ss_pred             -cccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287          475 -LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY  509 (513)
Q Consensus       475 -~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~  509 (513)
                       .+..+...+|-++|++++|||+|+..++|++++.+
T Consensus       276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V  311 (327)
T KOG0643|consen  276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV  311 (327)
T ss_pred             HHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence             12234455789999999999999999999977654

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.6e-28  Score=227.21  Aligned_cols=302  Identities=15%  Similarity=0.183  Sum_probs=205.8

Q ss_pred             cccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc
Q 010287           18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ   97 (513)
Q Consensus        18 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (513)
                      ++..+||+...  ...|-..|+....++++..+++++.+.....|+..++..+    ..+...+.    .+.  ....+.
T Consensus         5 k~rh~~g~~~k--~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~----~~~--~~~~l~   72 (493)
T PTZ00421          5 RFRHTQGVPAR--PDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK----LAS--NPPILL   72 (493)
T ss_pred             cccccccccCC--cccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc----CCC--CCceEe
Confidence            34556665544  2235677888888888777788888888888886544321    00000000    000  012356


Q ss_pred             CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287           98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (513)
Q Consensus        98 ~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (513)
                      +|.            +.|++++|+|. ++.+|++++.|++|++||+.++......                         
T Consensus        73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------  114 (493)
T PTZ00421         73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------  114 (493)
T ss_pred             CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence            787            89999999763 4568999999999999999765321100                         


Q ss_pred             eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeE
Q 010287          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRI  255 (513)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i  255 (513)
                                                                 ..+. ..+.+|...|.+++|+|++ ++|+++ .|++|
T Consensus       115 -------------------------------------------~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421        115 -------------------------------------------SDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             -------------------------------------------Ccce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence                                                       0000 1146899999999999975 688887 79999


Q ss_pred             EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      ++||++++....        .+..|...|.+++|+|++ .+|++++.|+.|++||++++..    +..+..+..      
T Consensus       151 rIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~------  211 (493)
T PTZ00421        151 NVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEAHAS------  211 (493)
T ss_pred             EEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEecCCC------
Confidence            999999765432        456789999999999998 8999999999999999998765    333333321      


Q ss_pred             cccccccEEEEEEeecCCEEEEEe-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          336 FTEIIASISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                           .....+.|.+++..+++++     ++.|++||++....++.....+...              .+....|+++++
T Consensus       212 -----~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~d~~  272 (493)
T PTZ00421        212 -----AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDEDTN  272 (493)
T ss_pred             -----CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcCCCC
Confidence                 1245677888877777632     4899999998644455444333211              123567899999


Q ss_pred             EEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          411 RVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       411 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      +|++++ .|+.|++||+.++......-..+..+...+++.|.
T Consensus       273 ~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        273 LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999887 59999999999874332222234566777888775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.8e-28  Score=195.08  Aligned_cols=239  Identities=18%  Similarity=0.239  Sum_probs=189.7

Q ss_pred             cCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          232 DYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       232 ~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      .+.+..++|+++. ..++++ +||++++||+......+       ..++.|...|.++.|++.....+++++.|++|++|
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW  132 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW  132 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence            3558899999963 445555 89999999976444433       26788999999999999877888999999999999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      +...+..    +.++            .+|..-|....|+| ...++++++ |+.+++||++..++.+. +..|...   
T Consensus       133 ~~~r~~S----v~Tf------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E---  192 (311)
T KOG0277|consen  133 DPNRPNS----VQTF------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE---  192 (311)
T ss_pred             cCCCCcc----eEee------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce---
Confidence            9876554    4444            45558899999999 566777765 59999999998777666 7777743   


Q ss_pred             cccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEE
Q 010287          388 LCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVR  465 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~  465 (513)
                                  ++++.|+. +.++|+||+.|+.|+.||+++-...+.++.+|...|+++.+||... .||+++.|-+++
T Consensus       193 ------------il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  193 ------------ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             ------------eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence                        55899987 5567889999999999999988777788999999999999999765 689999999999


Q ss_pred             EecCCCCCccc-cCCccccccCCeeEEEEeCC-CCEEEEEc-CCcEEEEe
Q 010287          466 RVKGADNSALD-ANGNAFDFSMKLLHLAWHPS-ENSIACAA-SNSLYMYY  512 (513)
Q Consensus       466 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~sp~-~~~la~~~-~~~~~i~~  512 (513)
                      |   |++...+ .....-.|+.-+..+.||+- ..++|+.+ |..++||+
T Consensus       261 i---w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  261 I---WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             e---cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9   5544212 22233357888999999987 56788666 99999997

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.6e-28  Score=232.38  Aligned_cols=313  Identities=15%  Similarity=0.208  Sum_probs=226.8

Q ss_pred             cccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCC-CccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ...|.+++.+|+|..+|||+  .||.++||+...--... .....+            .........|.           
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l------------~k~l~~m~~h~-----------   69 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL------------PKHLCTMDDHD-----------   69 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhccc------------chhheeecccc-----------
Confidence            56799999999999999999  89999999964321100 000000            11122345566           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       +.|+|+.|  ++||.+||+|+.|+.|.+|..........                           |            
T Consensus        70 -~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~---------------------------f------------  107 (942)
T KOG0973|consen   70 -GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTV---------------------------F------------  107 (942)
T ss_pred             -CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccc---------------------------c------------
Confidence             89999999  55999999999999999999875100000                           0            


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                             -+.++...+.-|.           +. ..+.+|...|..++|+|++.+|+++ -|++|.+|+..+.+ ..+  
T Consensus       108 -------gs~g~~~~vE~wk-----------~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~--  165 (942)
T KOG0973|consen  108 -------GSTGGAKNVESWK-----------VV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLK--  165 (942)
T ss_pred             -------cccccccccceee-----------EE-EEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eee--
Confidence                   0111111222221           12 2257899999999999999999998 59999999999873 433  


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           .+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-..    .+.+..+...      ......+..+.|||
T Consensus       166 -----vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i----~k~It~pf~~------~~~~T~f~RlSWSP  229 (942)
T KOG0973|consen  166 -----VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGI----EKSITKPFEE------SPLTTFFLRLSWSP  229 (942)
T ss_pred             -----eeecccccccceEECCcc-CeeeeecCCceEEEEEccccee----eEeeccchhh------CCCcceeeecccCC
Confidence                 568999999999999999 9999999999999999665333    2222222111      11124678899999


Q ss_pred             cCCEEEEEe-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-------------CC--
Q 010287          351 NGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------GG--  410 (513)
Q Consensus       351 ~~~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~--  410 (513)
                      ||++|++..     ..++.|.+-.+ -+.-..+-+|..+               +..+.|+|.             ++  
T Consensus       230 DG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p---------------~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  230 DGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAP---------------VEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCc---------------eEEEEeChHHhccccccCCccCCCcc
Confidence            999999842     26788888764 5556777888876               347777762             11  


Q ss_pred             --EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          411 --RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       411 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                        .+|+|+.|++|.||.......+....+....+|..+.|+|||..|..+|.||.|.+
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~  351 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL  351 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence              57899999999999987665555555566789999999999999999999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=4.4e-27  Score=205.98  Aligned_cols=388  Identities=12%  Similarity=0.139  Sum_probs=262.4

Q ss_pred             cccccccccccccEEEEEEcCCCCEEEeecCCC--------cEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc
Q 010287           25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF   96 (513)
Q Consensus        25 ~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (513)
                      ++.+..+.+|.+.|.|++.+||...+|+|-..|        .++|||..+-..                       ...+
T Consensus        94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-----------------------L~V~  150 (626)
T KOG2106|consen   94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-----------------------LHVI  150 (626)
T ss_pred             hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-----------------------eeee
Confidence            344556889999999999999999999876544        399999543321                       1122


Q ss_pred             cCCCCcccccccccccccceeEEEeecCCCceEEEe--ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287           97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus        97 ~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                      ...+            ..|.+++|++...|.+++.-  +.+..+.+||.+.+..........               ...
T Consensus       151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn---------------e~v  203 (626)
T KOG2106|consen  151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN---------------EVV  203 (626)
T ss_pred             cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc---------------ceE
Confidence            2233            77999999987777777664  677889999998764322111000               001


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  253 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~  253 (513)
                      ....|.|.+..+            +...+.+.+.+|+..........   ..+-......|.|++|.++|.. ++| ++|
T Consensus       204 ~~a~FHPtd~nl------------iit~Gk~H~~Fw~~~~~~l~k~~---~~fek~ekk~Vl~v~F~engdv-iTgDS~G  267 (626)
T KOG2106|consen  204 FLATFHPTDPNL------------IITCGKGHLYFWTLRGGSLVKRQ---GIFEKREKKFVLCVTFLENGDV-ITGDSGG  267 (626)
T ss_pred             EEEEeccCCCcE------------EEEeCCceEEEEEccCCceEEEe---eccccccceEEEEEEEcCCCCE-EeecCCc
Confidence            133566666655            66678899999987665442211   1122222356999999999875 466 799


Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc-------ccee---
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-------HSKL---  323 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~---  323 (513)
                      .|.||+..+.+...        ....|.+.|.+++...+|  .|++|+.|+.|..||-.-.+....       .+++   
T Consensus       268 ~i~Iw~~~~~~~~k--------~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  268 NILIWSKGTNRISK--------QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             eEEEEeCCCceEEe--------EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence            99999986544332        223799999999999998  456699999999999322111100       0111   


Q ss_pred             --------------eccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccccc
Q 010287          324 --------------FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       324 --------------~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                                    +.+.-.........+|......++.+|+...+++++ |+.+++|+ .  .+++-+......     
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~-----  409 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDP-----  409 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCc-----
Confidence                          111111111122356888899999999888777755 69999999 3  444443332222     


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK  468 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~  468 (513)
                                 +.++.|+|.| .++.|+..|...+.|.++. .. .++.....++..+.++|+|.+||.|+.|+.|.|+.
T Consensus       410 -----------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  410 -----------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR  475 (626)
T ss_pred             -----------eeEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence                       2389999999 9999999999999999974 33 34444488999999999999999999999999921


Q ss_pred             CCC-CCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          469 GAD-NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       469 ~~~-~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      ... -......+.+  +.++|+++.||+|+++|.+.+-|--++|+
T Consensus       476 Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  476 VSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             ECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEE
Confidence            111 1111122222  34899999999999999999877666665

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8e-28  Score=206.72  Aligned_cols=281  Identities=18%  Similarity=0.266  Sum_probs=226.8

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ...|+++...|....++||+.|..+.++|....+.                       ...|.||.            ..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-----------------------l~~~~Gh~------------kk  263 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-----------------------LATLKGHT------------KK  263 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhh-----------------------hhhccCcc------------eE
Confidence            45788888888878999999999999999766553                       36789999            89


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |+.+.|+|  +...+++++.|..|++|..........                                           
T Consensus       264 i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~~~-------------------------------------------  298 (506)
T KOG0289|consen  264 ITSVKFHK--DLDTVITASADEIIRVWSVPLSSEPTS-------------------------------------------  298 (506)
T ss_pred             EEEEEecc--chhheeecCCcceEEeeccccccCccc-------------------------------------------
Confidence            99999977  445899999999999999866542211                                           


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       ...|..+|+.+..+|.|.||+++ +|++..+.|++++.......   
T Consensus       299 ---------------------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs---  342 (506)
T KOG0289|consen  299 ---------------------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS---  342 (506)
T ss_pred             ---------------------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe---
Confidence                                             35788899999999999999999 79999999999887664431   


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                         -+...-.+++.+|+||| .+|.+|..||.+++||+.++....    .            |.+|.++|..++|+.+|-
T Consensus       343 ---~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a----~------------Fpght~~vk~i~FsENGY  402 (506)
T KOG0289|consen  343 ---DETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA----K------------FPGHTGPVKAISFSENGY  402 (506)
T ss_pred             ---eccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc----c------------CCCCCCceeEEEeccCce
Confidence               11233458999999999 999999999999999998866422    2            566779999999999999


Q ss_pred             EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-c
Q 010287          354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-A  431 (513)
Q Consensus       354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~  431 (513)
                      +|+++.+ +.|++||++. .+..+++...+..              ++.+++|.+.|.+|+.++.|=.|++++-.+.. .
T Consensus       403 ~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~  467 (506)
T KOG0289|consen  403 WLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT  467 (506)
T ss_pred             EEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence            9999776 8899999996 6667777655432              14489999999999999887677766644332 2


Q ss_pred             cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ....+..|.+....+.|....++++++++|..+++
T Consensus       468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             eeehhhhcccccceeeecccceEEeeccchhheEE
Confidence            23566677888889999999999999999999887

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=217.00  Aligned_cols=406  Identities=12%  Similarity=0.084  Sum_probs=262.6

Q ss_pred             cccccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .|..+++|++||++|+|+|+|-  ....+++|++....                       ...+|..|+          
T Consensus        76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-----------------------vVAEfvdHK----------  122 (1080)
T KOG1408|consen   76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-----------------------VVAEFVDHK----------  122 (1080)
T ss_pred             ccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-----------------------chhhhhhcc----------
Confidence            4677999999999999999997  56679999987554                       336788888          


Q ss_pred             ccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                        -.|+|++|+|  .++++++.+.  |-.|.+||++.+......++.                ...+.++|+.||.+...
T Consensus       123 --Y~vtcvaFsp--~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkis----------------s~Vsav~fsEdgSYfvT  182 (1080)
T KOG1408|consen  123 --YNVTCVAFSP--GNKYVVSVGSQHDMIVNVNDWRVNSSGASNKIS----------------SVVSAVAFSEDGSYFVT  182 (1080)
T ss_pred             --ccceeeeecC--CCcEEEeeccccceEEEhhhhhhcccccccccc----------------eeEEEEEEccCCceeee
Confidence              8899999966  5668887544  667888987653211110000                01112222222211110


Q ss_pred             c--------------------------------------------c----------------------------------
Q 010287          189 N--------------------------------------------F----------------------------------  190 (513)
Q Consensus       189 ~--------------------------------------------~----------------------------------  190 (513)
                      .                                            .                                  
T Consensus       183 ~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTn  262 (1080)
T KOG1408|consen  183 SGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTN  262 (1080)
T ss_pred             eeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccc
Confidence            0                                            0                                  


Q ss_pred             ---CCCCCCCCcCCCCCCceeceeeccCCcccccc--------------eeeEee---ccccCCeEEEEeccCCCEEEEE
Q 010287          191 ---GCASNDSSFPPGGVSSLRLPVVTSQETNLVAG--------------CRRIYA---HAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       191 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~---~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                         .+-...+++.++.++.+++++-.+.+...+..              +.+.+.   .+.-....++.|++....+..-
T Consensus       263 AnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscV  342 (1080)
T KOG1408|consen  263 ANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCV  342 (1080)
T ss_pred             cceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEE
Confidence               00123455556677777777665543211100              000000   0001123467788888888877


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC----------CeEEEEEeCCCcEEEEEcCCcc---c
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH----------CNMLAYSSSKGSIRLIDMRQSA---L  316 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~~~---~  316 (513)
                       .|..|++||++..++..+.     ..+.-|...|.++.--|-.          +..|++|+.|++|++||+..+.   .
T Consensus       343 YndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v  417 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV  417 (1080)
T ss_pred             EcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence             7999999999876654332     2445577777766654410          1369999999999999997632   1


Q ss_pred             ccccceeecc---------------ccCC---CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287          317 CDTHSKLFEE---------------QEAP---GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       317 ~~~~~~~~~~---------------~~~~---~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~  377 (513)
                      ..+.+..-+.               ...+   .......+....+++++.||+|++|++|+. |+++||++.. -+....
T Consensus       418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~  496 (1080)
T KOG1408|consen  418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCF  496 (1080)
T ss_pred             eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhh
Confidence            1111100000               0000   000011223457999999999999999997 9999999996 777778


Q ss_pred             eecccccccccccccccCCccceeeEEEeC---CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC--
Q 010287          378 FQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR--  452 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--  452 (513)
                      +..|+..               |.++.|+.   ..++|++++.|..|+|||......+.+++.+|...|+++.|.-.|  
T Consensus       497 ~eAHesE---------------ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  497 MEAHESE---------------ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             eecccce---------------eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            8888876               45777774   347899999999999999988777779999999999999998777  


Q ss_pred             CceeeecCCCeEEEecCCCCC-ccc-cCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          453 PSRPLGSLSGVVRRVKGADNS-ALD-ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       453 ~~l~~~~~d~~i~~~~~~~~~-~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ..+++++.|..|.+....+.. +.. ......--...+++|+..|..++++++. |.+|.||.
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~  624 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD  624 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence            678999999988871111110 000 1111111245789999999999999777 88899985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.5e-28  Score=213.37  Aligned_cols=300  Identities=15%  Similarity=0.210  Sum_probs=208.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.++++  .+.|..|++|+.|.+|++||+..-......                                        
T Consensus       168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------------------------  205 (641)
T KOG0772|consen  168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------------------------  205 (641)
T ss_pred             eEEEEeee--cCCCceeeeccccceEEEEecccccccchh----------------------------------------
Confidence            88999999  558889999999999999999764311100                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                    ++                 .........|+++.|++.+..|++. .....+|+|.. +....+...
T Consensus       206 --------------fr-----------------~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~K  253 (641)
T KOG0772|consen  206 --------------FR-----------------QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSK  253 (641)
T ss_pred             --------------hh-----------------ccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeeec
Confidence                          00                 0011223458899999998888876 68889999976 333332211


Q ss_pred             c-----CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          272 V-----KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       272 ~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      -     ....-++|...++|.+|+|+....|++++.||++++||+.+.+..   ..++.....       .+..-+++.+
T Consensus       254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~-------~g~Rv~~tsC  323 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA-------GGKRVPVTSC  323 (641)
T ss_pred             cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeeccC-------CCcccCceee
Confidence            1     112347899999999999998889999999999999999875532   233332211       2233578999


Q ss_pred             EEeecCCEEEEEe-CCeEEEEEccCCC-CC-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          347 KFARNGRHILSRD-YMTLKLWDINMDS-GP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       347 ~~sp~~~~l~~~~-~~~v~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      +|+|||.+||+|. ||.|.+|+..... .+ ...-..|...             .+|+++.||+||++|++-+.|+++++
T Consensus       324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------------~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------------QDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             ecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------------CceeEEEeccccchhhhccCCCceee
Confidence            9999999999976 4999999976411 11 2222344432             23679999999999999999999999


Q ss_pred             EecCCCCccceeecCC--CCceeEEEEcCCCCceeeecCC------CeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          424 FGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       424 wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      ||++..++.+.+..+-  ..+-+.++|+|+.++|++|..-      |.+.++....+.   ......-....|..+.|||
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRCLWHP  467 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEEeecc
Confidence            9999876666555443  3456789999999999998642      334442222111   1111111257899999999


Q ss_pred             CCCEEE-EEcCCcEEEEe
Q 010287          496 SENSIA-CAASNSLYMYY  512 (513)
Q Consensus       496 ~~~~la-~~~~~~~~i~~  512 (513)
                      .-+.|. ..+++++.+|+
T Consensus       468 kLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  468 KLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             hhhheeeecCCCceEEEE
Confidence            966555 55588888886

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.6e-28  Score=219.87  Aligned_cols=240  Identities=17%  Similarity=0.344  Sum_probs=200.7

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccC-CCCcccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE  113 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~  113 (513)
                      .+.|+++.|+++|.+||+|..+|.|.|||....+.+                       ..+.+ |.            .
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-----------------------~~~~~~h~------------~  261 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-----------------------RTLRGSHA------------S  261 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------ccccCCcC------------c
Confidence            799999999999999999999999999998766643                       34455 66            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.+++|.    +..+.+|+.|+.|..+|++..+....                                          
T Consensus       262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~------------------------------------------  295 (484)
T KOG0305|consen  262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS------------------------------------------  295 (484)
T ss_pred             eeEEEecc----CceEEEecCCCcEEEEEEecchhhhh------------------------------------------
Confidence            89999993    45788999999999999987642110                                          


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                       .+.+|...|..++|++|++++++| .|+.+.|||.......+     
T Consensus       296 ---------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~-----  337 (484)
T KOG0305|consen  296 ---------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF-----  337 (484)
T ss_pred             ---------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-----
Confidence                                             036888999999999999999999 79999999996544443     


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                         .+..|...|..++|+|-...+||+|+.  |+.|++||..++....    ..+..             +.|.++.|++
T Consensus       338 ---~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~vdtg-------------sQVcsL~Wsk  397 (484)
T KOG0305|consen  338 ---TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----SVDTG-------------SQVCSLIWSK  397 (484)
T ss_pred             ---EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----ccccC-------------CceeeEEEcC
Confidence               567899999999999988789998765  9999999999887632    22221             5799999999


Q ss_pred             cCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          351 NGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       351 ~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      ..+.|+++.   +..|.||+..+ .+.+..+.+|...               |..++++|||..+++|+.|.++++|++-
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEecccc
Confidence            887777642   28999999997 8889999999876               5689999999999999999999999987


Q ss_pred             CC
Q 010287          428 EG  429 (513)
Q Consensus       428 ~~  429 (513)
                      ..
T Consensus       462 ~~  463 (484)
T KOG0305|consen  462 DE  463 (484)
T ss_pred             CC
Confidence            64

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-26  Score=192.33  Aligned_cols=277  Identities=18%  Similarity=0.236  Sum_probs=207.2

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|+++.|  +.+|..+++++.|.+++|||..+++......                                       
T Consensus        15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~---------------------------------------   53 (311)
T KOG1446|consen   15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---------------------------------------   53 (311)
T ss_pred             CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence            77999999  5588899999999999999999987655422                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~  269 (513)
                                                           .+...+..++|......++.+   .|.+|+..++.+.+- ++ 
T Consensus        54 -------------------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky-lR-   94 (311)
T KOG1446|consen   54 -------------------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY-LR-   94 (311)
T ss_pred             -------------------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce-EE-
Confidence                                                 223346677776655555544   399999999986553 33 


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|...|.+++.+|-+ ..|++++.|++|++||+|..+..    ..+..              ..-..++|+
T Consensus        95 ------YF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~--------------~~~pi~AfD  149 (311)
T KOG1446|consen   95 ------YFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL--------------SGRPIAAFD  149 (311)
T ss_pred             ------EcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------CCCcceeEC
Confidence                  679999999999999998 89999999999999999965541    11111              123447899


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      |.|-++|++.. ..|++||+++- ..|..++........            ..+.+.|||||++|+.++..+.+++.|.-
T Consensus       150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDAf  217 (311)
T KOG1446|consen  150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDAF  217 (311)
T ss_pred             CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence            99999999887 69999999974 456666654432211            13489999999999999999999999999


Q ss_pred             CCCccceeecCCCCce---eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEeCCCCEEEEE
Q 010287          428 EGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~  503 (513)
                      .|. ...++..+...-   ...+|+|+++++++|+.||.|.+   |............+ +..++.++.|+|...++|++
T Consensus       218 ~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v---w~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa  293 (311)
T KOG1446|consen  218 DGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV---WNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA  293 (311)
T ss_pred             CCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE---EEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence            884 556666554433   57889999999999999999999   33322122222222 57889999999998888877


Q ss_pred             cCCcEEEE
Q 010287          504 ASNSLYMY  511 (513)
Q Consensus       504 ~~~~~~i~  511 (513)
                      +.. +.+|
T Consensus       294 ~s~-l~fw  300 (311)
T KOG1446|consen  294 SSN-LVFW  300 (311)
T ss_pred             Cce-EEEE
Confidence            654 4444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=216.26  Aligned_cols=364  Identities=15%  Similarity=0.195  Sum_probs=238.1

Q ss_pred             EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      -++.|+|....|.+-..|..++|||+.+....++.                    ..+-.|.            ..|+.+
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~--------------------~s~lyHS------------~ciW~V  375 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC--------------------SSMLYHS------------ACIWDV  375 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccce--------------------eeeeecc------------ceeeee
Confidence            46779999999999999999999999876654332                    1222343            555555


Q ss_pred             EEeec---------CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          119 RWCQS---------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       119 ~~~~~---------~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      .-.|.         -....|.+++.|++||+|++..+....+..-+.-..                              
T Consensus       376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~------------------------------  425 (1080)
T KOG1408|consen  376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA------------------------------  425 (1080)
T ss_pred             ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh------------------------------
Confidence            54441         012368999999999999998743222211111000                              


Q ss_pred             cCCCCCCCCcCCCCCCceece-eeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLP-VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                            ++.-.+..++...+. |....-.    .............+++++++|++++|++| .-|.|++|++.......
T Consensus       426 ------~l~ki~y~d~~~q~~~d~~~~~f----dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~  495 (1080)
T KOG1408|consen  426 ------NLSKIPYEDSTQQIMHDASAGIF----DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC  495 (1080)
T ss_pred             ------hhhcCccccCchhhhhhccCCcc----cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence                  000000011111100 0000000    00000012344569999999999999999 59999999998544332


Q ss_pred             eecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                              .++.|...|.|+.|+.-  +.++|++++.|+.|++||+......   +.            .+.+|...|++
T Consensus       496 --------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---~q------------tld~HSssITs  552 (1080)
T KOG1408|consen  496 --------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---VQ------------TLDGHSSSITS  552 (1080)
T ss_pred             --------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---hh------------hhcccccceeE
Confidence                    56889999999999842  2368999999999999998654321   11            25678899999


Q ss_pred             EEEeecC--CEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287          346 IKFARNG--RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR  422 (513)
Q Consensus       346 i~~sp~~--~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  422 (513)
                      +.|.-+|  ..++++ .|.. .+|+..........+..|.....+ .         .++.++..|..+++++++.|..|+
T Consensus       553 vKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~k-t---------TlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSK-T---------TLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             EEEeecCCceEEEeccCchh-hheehhccccCceecccccccccc-c---------eEEEeeeCCCcceEEEEecccceE
Confidence            9999866  556654 4543 344443212222223323222111 1         134899999999999999999999


Q ss_pred             EEecCCCCccceeecC---CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287          423 VFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       423 vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  499 (513)
                      ||+++++++ ...+++   |.+..-.+...|.|.|+|+...|.++.+   -+....+.....++|+..|+.+.|.+|-+.
T Consensus       622 if~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~---~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  622 IFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF---VDFVSGECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             EEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEE---EEeccchhhhhhcCcchheeeeeecccchh
Confidence            999999844 466665   4455668899999999999999999998   111112233466679999999999999998


Q ss_pred             EEEE-cCCcEEEEe
Q 010287          500 IACA-ASNSLYMYY  512 (513)
Q Consensus       500 la~~-~~~~~~i~~  512 (513)
                      |++. +|+.|+||.
T Consensus       698 lISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWK  711 (1080)
T ss_pred             heeecCCceEEEEE
Confidence            8855 488899996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.2e-26  Score=179.08  Aligned_cols=308  Identities=18%  Similarity=0.173  Sum_probs=224.5

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .+..++.|.+++|+|.|.+.|+|+...+.+|.....-...   +...+     -+..|.....+.-.-|.          
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~---r~~he-----a~~~pp~v~~kr~khhk----------   89 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL---RHAHE-----AAKQPPSVLCKRNKHHK----------   89 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCc---ccccc-----cccCCCeEEeeeccccC----------
Confidence            4456889999999999999999999999998874322110   11100     01112222223233344          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|+|.+|+|  +|.+++++++|++|++-..+...+...                               |..     
T Consensus        90 --gsiyc~~ws~--~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g~d-----  129 (350)
T KOG0641|consen   90 --GSIYCTAWSP--CGELIATGSNDKTIKVLPFNADTCNAT-------------------------------GHD-----  129 (350)
T ss_pred             --ccEEEEEecC--ccCeEEecCCCceEEEEeccccccccc-------------------------------Ccc-----
Confidence              8999999955  888999999999999987765443211                               000     


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----CCEEEEE--cCCeEEEEEcCCCc
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEISN  264 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~--~d~~i~vwd~~~~~  264 (513)
                                                         ..+.-|.+.|..++|-.+    +.+|+++  .|..|++-|..+++
T Consensus       130 -----------------------------------le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen  130 -----------------------------------LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             -----------------------------------eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence                                               013567888999999543    5677776  47778888887766


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      ...        .+.+|.+.|.++- +-++ -+|++|+.|.+|++||++-...    +.++.......     .-.++.|.
T Consensus       175 ~~~--------a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~----v~~l~~~~~~~-----glessava  235 (350)
T KOG0641|consen  175 GFH--------ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSC----VNTLDNDFHDG-----GLESSAVA  235 (350)
T ss_pred             cce--------eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccce----eeeccCcccCC-----CcccceeE
Confidence            443        5688999998874 2234 7899999999999999987655    33332211000     00125799


Q ss_pred             EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      +++..|.|++|++|.. ....+||++- +++++.+..|...               |.++.|+|...||++++.|..|++
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsad---------------ir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSAD---------------IRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccc---------------eeEEEeCCCceEEEEecccceEEE
Confidence            9999999999999975 8899999995 8999999888765               449999999999999999999999


Q ss_pred             EecCCCC---ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          424 FGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      -|+...-   ....+...|...+-.+.|.|..-.+++.+.|.++.+
T Consensus       300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl  345 (350)
T KOG0641|consen  300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL  345 (350)
T ss_pred             eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence            9987431   122455678888889999999999999999999887

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=206.69  Aligned_cols=234  Identities=15%  Similarity=0.217  Sum_probs=188.5

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..+.+++|-.||++|++| ..|.|+++|.. .+..+.       .+..|+.++..+.|+|++...+++|+.|+.+++||+
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-~r~iLR-------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMK-SRVILR-------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccc-cHHHHH-------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            458899999999999999 69999999955 333332       578999999999999998889999999999999999


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .+...    ...            +.+|...|.|.+|+| ++.++++|+. |.|++||++.....+.++. |..+     
T Consensus       141 s~a~v----~~~------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p-----  198 (487)
T KOG0310|consen  141 STAYV----QAE------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP-----  198 (487)
T ss_pred             CCcEE----EEE------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc-----
Confidence            87653    112            466778999999999 4567778885 9999999997444454543 3333     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG  469 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~  469 (513)
                                |-.+.+-|.|..+++++. ..|++||+.+|.+++.....|...|+++.+..++..|++|+-|+.++++..
T Consensus       199 ----------Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  199 ----------VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             ----------eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence                      348899999999998885 579999999887777777779999999999999999999999999999331


Q ss_pred             CCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          470 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      ...    .....+.+.++|.+++.+|++..++.|-.|++..+
T Consensus       268 t~~----Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  268 TNY----KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cce----EEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            111    11233456899999999999999999988887654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.1e-26  Score=201.45  Aligned_cols=300  Identities=13%  Similarity=0.190  Sum_probs=220.3

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-cCCCCcccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~  109 (513)
                      ...|.-+|+|++++|+++++.+++.+|+|.=|++.+++...-..   +....-.   ..+.....- .+|.         
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---~~~ev~k---~~~~~~k~~r~~h~---------  202 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---ERDEVLK---SHGNPLKESRKGHV---------  202 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccc---ccchhhh---hccCCCCccccccc---------
Confidence            44689999999999999999999999999999998877531110   0000000   000000000 2454         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++.  ++|+.+|++|+.|..|.||+.++.+....                                      
T Consensus       203 ---keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~--------------------------------------  239 (479)
T KOG0299|consen  203 ---KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV--------------------------------------  239 (479)
T ss_pred             ---ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc--------------------------------------
Confidence               77999999  55999999999999999999998763322                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|.+.|.+++|-.....++++ .|..|++|+++... .++
T Consensus       240 --------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~ve  280 (479)
T KOG0299|consen  240 --------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVE  280 (479)
T ss_pred             --------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHH
Confidence                                                  36899999999998877777776 79999999998433 222


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             ++.+|++.|..+.....+ +.+-+|+.|+++++|++.....     .            ++.++.+.+-|++|
T Consensus       281 -------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----l------------ifrg~~~sidcv~~  335 (479)
T KOG0299|consen  281 -------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----L------------IFRGGEGSIDCVAF  335 (479)
T ss_pred             -------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----e------------eeeCCCCCeeeEEE
Confidence                   678999999999988877 7777777999999999843221     1            24455578999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      -. ...+++|++ |.|.+|++.. .+++.+.....+..+....+.   ..+.|++++..|..+++++|+.+|.|++|.+.
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~---~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVN---GNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccc---cccceeeeEecccCceEEecCCCCceEEEEec
Confidence            84 566777776 9999999996 888877654443322221111   11457799999999999999999999999998


Q ss_pred             CCCccc---eeecCCCCceeEEEEcCCCCceeee
Q 010287          428 EGSAES---TTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       428 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      .+-..+   ..+. -.+.|++++|+++|+.+++|
T Consensus       411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  411 DGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            873322   2232 45679999999999977665

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1.1e-25  Score=197.27  Aligned_cols=359  Identities=13%  Similarity=0.204  Sum_probs=245.6

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      .+.-|.|++|.++|+ ++||..+|.|.||+..+.+                       +.+...+|+            +
T Consensus       245 ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-----------------------~~k~~~aH~------------g  288 (626)
T KOG2106|consen  245 EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR-----------------------ISKQVHAHD------------G  288 (626)
T ss_pred             cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce-----------------------EEeEeeecC------------C
Confidence            347899999999986 7899999999999975443                       223334888            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.+++...  +| .|++|+.|+.|..||- .-+  ...+....+.             -+......+.+.-+       
T Consensus       289 gv~~L~~lr--~G-tllSGgKDRki~~Wd~-~y~--k~r~~elPe~-------------~G~iRtv~e~~~di-------  342 (626)
T KOG2106|consen  289 GVFSLCMLR--DG-TLLSGGKDRKIILWDD-NYR--KLRETELPEQ-------------FGPIRTVAEGKGDI-------  342 (626)
T ss_pred             ceEEEEEec--Cc-cEeecCccceEEeccc-ccc--ccccccCchh-------------cCCeeEEecCCCcE-------
Confidence            999999954  55 5777999999999992 222  2222222110             00011111111111       


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                           +.+...+.|..=.+...        ......+|....+.++.+|+.+.++++ .|+.+++|+  ..+..+..   
T Consensus       343 -----~vGTtrN~iL~Gt~~~~--------f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~---  404 (626)
T KOG2106|consen  343 -----LVGTTRNFILQGTLENG--------FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK---  404 (626)
T ss_pred             -----EEeeccceEEEeeecCC--------ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE---
Confidence                 22222222221111110        111236888899999999999999988 799999999  23333331   


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                            ....++.|+.|+|.+  .++.|+..|...+.|.++..+..     ....            ..++++++|+|+|
T Consensus       405 ------~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~-----~~~d------------~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  405 ------IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVT-----IHTD------------NEQLSVVRYSPDG  459 (626)
T ss_pred             ------EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEE-----EEec------------CCceEEEEEcCCC
Confidence                  236778999999997  89999999999999998855421     1111            2679999999999


Q ss_pred             CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      .+||.|+. +.|+||.+..++........+..              .+++.+.||+|+++|.+-+.|-.|..|....- +
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--------------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~  524 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--------------SPITHLDWSSDSQFLVSNSGDYEILYWKPSEC-K  524 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecC--------------ceeEEeeecCCCceEEeccCceEEEEEccccC-c
Confidence            99999985 99999999876666655544433              12679999999999999999999999954432 2


Q ss_pred             cceeec------------------CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287          432 ESTTLE------------------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       432 ~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  493 (513)
                      .....+                  .+...+..++.+..++.+|+|...|.|++.+--.............|++.|++++|
T Consensus       525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F  604 (626)
T KOG2106|consen  525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF  604 (626)
T ss_pred             ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence            111111                  34455667777888999999999999999322222211223344569999999999


Q ss_pred             eCCCCEEE-EEcCCcEEEEe
Q 010287          494 HPSENSIA-CAASNSLYMYY  512 (513)
Q Consensus       494 sp~~~~la-~~~~~~~~i~~  512 (513)
                      .-+...|. ++.|.++..|.
T Consensus       605 l~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  605 LCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             eeCCceEEecCCCceEEEEE
Confidence            98877776 55588888884

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=215.72  Aligned_cols=297  Identities=19%  Similarity=0.288  Sum_probs=219.8

Q ss_pred             cccccccEE---EEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           31 EVQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        31 ~~~h~~~V~---~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      +.+|...|.   ++..+. .++||.||++||.|++|+.......                 |+-.+...++.|.      
T Consensus        17 e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------   73 (735)
T KOG0308|consen   17 EKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------   73 (735)
T ss_pred             hhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH------
Confidence            346777777   566654 4778999999999999997654321                 2222445667777      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            +.|+.+..+  .+++.|+++|.|-+|++|+...+.....                                   
T Consensus        74 ------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~-----------------------------------  110 (735)
T KOG0308|consen   74 ------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCM-----------------------------------  110 (735)
T ss_pred             ------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhH-----------------------------------
Confidence                  999999984  4777899999999999999876531110                                   


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe-ccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                            . .+..|.+.|.|+++ .++...+++| -|+.|++||++++.
T Consensus       111 --------------------------------------s-tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~  151 (735)
T KOG0308|consen  111 --------------------------------------S-TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT  151 (735)
T ss_pred             --------------------------------------h-hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence                                                  0 03678899999999 7788888888 49999999999763


Q ss_pred             c-eeeecc-cCccccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          265 Q-SFNIVD-VKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       265 ~-~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      . .....+ ..-..+. ++...|++++.++.+ ..|++|+..+.+++||.++++...    .            +.+|..
T Consensus       152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kim----k------------LrGHTd  214 (735)
T KOG0308|consen  152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIM----K------------LRGHTD  214 (735)
T ss_pred             hhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccccee----e------------eecccc
Confidence            2 111111 1111333 788999999999999 999999999999999999977532    2            456778


Q ss_pred             cEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          342 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      .|..+..++||..+++++ ||+|++||+.. .+++.++..|...               |+++..+|+=.++++|+.||.
T Consensus       215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             ceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCCc
Confidence            899999999999999876 59999999996 8999999999876               678889999999999999999


Q ss_pred             EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |..=|+.+..+ ...+.....||..+.......-+-++..|+.|+-
T Consensus       279 i~~Tdl~n~~~-~tlick~daPv~~l~~~~~~~~~WvtTtds~I~r  323 (735)
T KOG0308|consen  279 IYRTDLRNPAK-STLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR  323 (735)
T ss_pred             EEecccCCchh-heEeecCCCchhhhhhccccCCceeeecccccee
Confidence            99999987522 2333333445555554433333334445555554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.9e-26  Score=189.59  Aligned_cols=308  Identities=13%  Similarity=0.186  Sum_probs=208.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+.||++|||.+.|+.|+||++.+....                  ++++...            .+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~------------------eHr~~R~------------nv  130 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK------------------EHRCIRQ------------NV  130 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh------------------hhhHhhc------------cc
Confidence            46689999999999999999999999999999998764431                  1111110            11


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      +. +.-+.+.|.|+.. ..+++.....++++|.+...+-                                  |+.    
T Consensus       131 e~-dhpT~V~FapDc~-s~vv~~~~g~~l~vyk~~K~~d----------------------------------G~~----  170 (420)
T KOG2096|consen  131 EY-DHPTRVVFAPDCK-SVVVSVKRGNKLCVYKLVKKTD----------------------------------GSG----  170 (420)
T ss_pred             cC-CCceEEEECCCcc-eEEEEEccCCEEEEEEeeeccc----------------------------------CCC----
Confidence            11 3468899976332 3444456677899998754321                                  000    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                    .-...-||  .          ..+-..|.-.+..+-...++++|+++ .|..|.+|++. ++.+ .
T Consensus       171 --------------~~~~v~~D--~----------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L-~  222 (420)
T KOG2096|consen  171 --------------SHHFVHID--N----------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL-Q  222 (420)
T ss_pred             --------------Cccccccc--c----------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee-e
Confidence                          00000000  0          00124566667777778889999999 69999999998 4433 3


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc--ccccceeeccccCCCCccccccccccEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                             .+......-+..+.+|+| +++++++.---|++|.+--++.  .+.-.+.|          .+++|.+.|..+
T Consensus       223 -------~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf----------~LkGH~saV~~~  284 (420)
T KOG2096|consen  223 -------SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF----------SLKGHQSAVLAA  284 (420)
T ss_pred             -------eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhh----------eeccchhheeee
Confidence                   334445556778899999 9999999999999998643221  11111222          267888999999


Q ss_pred             EEeecCCEEEEEe-CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          347 KFARNGRHILSRD-YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       347 ~~sp~~~~l~~~~-~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      +|+|+.+.+++.+ ||.++|||++-.      .+.+++.......          ..-.+ ..+.++|.|+.|+.+. ..
T Consensus       285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a----------ag~~p-~RL~lsP~g~~lA~s~-gs  352 (420)
T KOG2096|consen  285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA----------AGSEP-VRLELSPSGDSLAVSF-GS  352 (420)
T ss_pred             eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh----------cCCCc-eEEEeCCCCcEEEeec-CC
Confidence            9999999999987 599999998641      1112221110000          00001 1689999999988655 45


Q ss_pred             cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+++|..++++.....-..|...|.++.|+++|+++++++ |+.+++
T Consensus       353 ~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv  398 (420)
T KOG2096|consen  353 DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV  398 (420)
T ss_pred             ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence            7999999988555455568999999999999999999997 777777

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5.2e-28  Score=200.39  Aligned_cols=284  Identities=16%  Similarity=0.216  Sum_probs=221.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.+.|..|+|  |+.+|++++.||.|.+||..+|++..-.+++...                                  
T Consensus       214 Sh~EcA~FSP--DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd----------------------------------  257 (508)
T KOG0275|consen  214 SHVECARFSP--DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD----------------------------------  257 (508)
T ss_pred             cchhheeeCC--CCceEeeccccceeeeehhccchhhhhhhhhhhc----------------------------------
Confidence            5688999955  8899999999999999999999866544333211                                  


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                        .+.-+...|.|++|+.|...+++| .||.|++|.++++..+.    
T Consensus       258 ----------------------------------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR----  299 (508)
T KOG0275|consen  258 ----------------------------------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR----  299 (508)
T ss_pred             ----------------------------------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH----
Confidence                                              023566789999999999999999 69999999999887553    


Q ss_pred             cCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          272 VKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       272 ~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                          .+ ..|...|+|+.|+.|+ ..+++++.|.++++.-+.+|+..    +.            +.+|.+.|+...|.+
T Consensus       300 ----rFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KE------------frGHsSyvn~a~ft~  358 (508)
T KOG0275|consen  300 ----RFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KE------------FRGHSSYVNEATFTD  358 (508)
T ss_pred             ----HhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HH------------hcCccccccceEEcC
Confidence                33 4799999999999998 89999999999999999998863    33            566778999999999


Q ss_pred             cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 010287          351 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       351 ~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      ||..+++++ ||+|++|+.++ .+++.+++......             +|..+-.-| +...++++...++|++-++. 
T Consensus       359 dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~q-  423 (508)
T KOG0275|consen  359 DGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-  423 (508)
T ss_pred             CCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEecc-
Confidence            999999976 59999999997 88888886544321             133555555 45688899999999999987 


Q ss_pred             CCccceeec---CCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          429 GSAESTTLE---ASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       429 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                       ++....+.   ...+..-+.+.+|.|.++.+.++|+.++-  +..+.+.     ....-|...+..++-||..+.||+-
T Consensus       424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----RTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             -ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----eeeecccccccccccCcccchhhhh
Confidence             34444433   23455668889999999999999999987  2233222     2333478899999999999999988


Q ss_pred             cCC-cEEEEe
Q 010287          504 ASN-SLYMYY  512 (513)
Q Consensus       504 ~~~-~~~i~~  512 (513)
                      ++| -+.+|.
T Consensus       498 sEDgllKLWk  507 (508)
T KOG0275|consen  498 SEDGLLKLWK  507 (508)
T ss_pred             cccchhhhcC
Confidence            854 455553

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.8e-26  Score=187.42  Aligned_cols=297  Identities=15%  Similarity=0.216  Sum_probs=201.3

Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      ..+.+|.            +.|++++|  +.||.+|++++.|++|++|+++....+...-+                   
T Consensus        80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-------------------  126 (420)
T KOG2096|consen   80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCI-------------------  126 (420)
T ss_pred             hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHh-------------------
Confidence            4577888            88999999  67999999999999999999987432211000                   


Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--c
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D  251 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~  251 (513)
                                                                         +.  .-.-+..+.+.|.||.+-++.+  .
T Consensus       127 ---------------------------------------------------R~--nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen  127 ---------------------------------------------------RQ--NVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             ---------------------------------------------------hc--cccCCCceEEEECCCcceEEEEEcc
Confidence                                                               00  0111235678999998877765  6


Q ss_pred             CCeEEEEEcCCCc---ceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          252 DLRINLWNLEISN---QSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       252 d~~i~vwd~~~~~---~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ..++++|.+...+   .....+......+ +.|...+..+-....+ .+|++++.|..|.+|+++ |+..    ..++..
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idtn  227 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDTN  227 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeeccc
Confidence            8899999775322   1111111111111 3466677777777777 999999999999999998 5542    222222


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCC-------CCCeeeeecccccccccccccccCCccc
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      .            ..-+..+.||+|++++++.- -.|++|.+-..       -..+..+++|...               
T Consensus       228 q------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---------------  280 (420)
T KOG2096|consen  228 Q------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---------------  280 (420)
T ss_pred             c------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---------------
Confidence            1            23466789999999999876 88999997531       1234566777765               


Q ss_pred             eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc---eeec-------CCCCceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287          400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES---TTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG  469 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~  469 (513)
                      |+.++|+++.+.+++.+.||++++||..-....-   ..++       .....-..+..+|+++.||... ...++++..
T Consensus       281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s  359 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS  359 (420)
T ss_pred             eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence            5699999999999999999999999976432111   1111       2222333899999999988653 334444211


Q ss_pred             CCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          470 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .+-.  .+.....-|+..|.+++|+|+|+++|++++..+.++.
T Consensus       360 e~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  360 EDGK--DYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             ccCc--cchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            1111  1111122379999999999999999999998887763

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3e-25  Score=201.51  Aligned_cols=332  Identities=15%  Similarity=0.215  Sum_probs=244.5

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ...|+|++|+.+.+.||.+-.+|.|-||++...                      +-....+.+++           +..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~-----------drs   71 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPE-----------DRS   71 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCC-----------CCc
Confidence            579999999999999999999999999997542                      22334455655           278


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |.+++|+   ++..|++.+.+|+|.-||+.+++.+....                                         
T Consensus        72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-----------------------------------------  107 (691)
T KOG2048|consen   72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNID-----------------------------------------  107 (691)
T ss_pred             eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEec-----------------------------------------
Confidence            9999996   35689999999999999999887544321                                         


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                         ...+.|++++.+|.+..++.| +||.+..++...+...+..    
T Consensus       108 -----------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r----  148 (691)
T KOG2048|consen  108 -----------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR----  148 (691)
T ss_pred             -----------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe----
Confidence                                               223569999999999999988 8998877777755544332    


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                        .+...+++|.+++|+|++ ..+++|+.||.|++||..++.......+.+..-..        +-..-|+++.|-.+ .
T Consensus       149 --~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k--------~~~~iVWSv~~Lrd-~  216 (691)
T KOG2048|consen  149 --SLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK--------REPTIVWSVLFLRD-S  216 (691)
T ss_pred             --ecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccccc--------CCceEEEEEEEeec-C
Confidence              344457899999999999 88999999999999999987753311111111110        01135777777744 5


Q ss_pred             EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      .|++|+. |+|++||... +..++....|...               |.+++..+++.++++++-|+.|..|...+.+..
T Consensus       217 tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~ad---------------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~  280 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIF-GTLIQSHSCHDAD---------------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE  280 (691)
T ss_pred             cEEEecCCceEEEEcccC-cchhhhhhhhhcc---------------eeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence            6777876 9999999996 8888888888765               569999999999999999999999988876442


Q ss_pred             ---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC------------CCccc---------------------
Q 010287          433 ---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------------NSALD---------------------  476 (513)
Q Consensus       433 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~------------~~~~~---------------------  476 (513)
                         ...-..|...+++++..++  .+.+|+.|..+.+....+            +.+..                     
T Consensus       281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lw  358 (691)
T KOG2048|consen  281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLW  358 (691)
T ss_pred             eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccce
Confidence               2333478888999999887  889999999988700000            00000                     


Q ss_pred             cCCcc---------------ccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          477 ANGNA---------------FDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       477 ~~~~~---------------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      ..+..               ..-...|.+.+.||||++||.++-..++||.
T Consensus       359 rlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~  409 (691)
T KOG2048|consen  359 RLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR  409 (691)
T ss_pred             eccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence            00000               0113468999999999999999877777764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=5.4e-26  Score=232.63  Aligned_cols=257  Identities=14%  Similarity=0.236  Sum_probs=189.9

Q ss_pred             ccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+...|.+++|+|. +.+||+++.||+|+|||+.+++.                       ...+.+|.          
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------------------~~~~~~H~----------  575 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------------------VTEMKEHE----------  575 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------------------EEEecCCC----------
Confidence            345678999999885 78999999999999999876542                       35567888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|++++|+| .++.+|++++.|++|++||+.++......                                      
T Consensus       576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------------------------  614 (793)
T PLN00181        576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI--------------------------------------  614 (793)
T ss_pred             --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence              8899999975 24579999999999999999876543221                                      


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec-cCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            .. ...+.++.|+ +++.+|++| .|+.|++||++.......
T Consensus       615 --------------------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~  655 (793)
T PLN00181        615 --------------------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC  655 (793)
T ss_pred             --------------------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence                                                  11 1347889995 578999998 799999999986543222


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc--cccceeeccccCCCCccccccccccEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                             .+.+|...|.++.|. ++ ..|++++.|+.|++||++.+...  ...+..            +.+|...+.++
T Consensus       656 -------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------------~~gh~~~i~~v  714 (793)
T PLN00181        656 -------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHS------------FMGHTNVKNFV  714 (793)
T ss_pred             -------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEE------------EcCCCCCeeEE
Confidence                   456899999999997 45 78999999999999999754210  111222            45566789999


Q ss_pred             EEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc-cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          347 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       347 ~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      +|+|++.+|++|+. +.|++|+... ..++..+..... ......   ....-..|.+++|+|++.+|++|+.||.|++|
T Consensus       715 ~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        715 GLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             EEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence            99999999999885 9999999875 444333321110 000000   00111136699999999999999999999999


Q ss_pred             ec
Q 010287          425 GC  426 (513)
Q Consensus       425 d~  426 (513)
                      ++
T Consensus       791 ~~  792 (793)
T PLN00181        791 EM  792 (793)
T ss_pred             ec
Confidence            86

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8e-27  Score=217.50  Aligned_cols=203  Identities=13%  Similarity=0.171  Sum_probs=154.2

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      +.||.+.|..+.|+.++ +|+++ .|.+|++|++.....+         ..-.|.+.|+|++|+|.+.++|++|+.|+.|
T Consensus       365 f~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL---------~~F~HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL---------KVFSHNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             hhccchhheecccccCC-eeEeccccccEEeecCCCccee---------eEEecCCeeEEEEecccCCCcEeecccccce
Confidence            47999999999999876 55555 7999999999865543         2346999999999999877999999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      |||++...+..     .+..            ...-|++++|.|||++.+.|+. |.+++|+... .+.......+....
T Consensus       435 RiWsI~d~~Vv-----~W~D------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  435 RLWSISDKKVV-----DWND------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNK  496 (712)
T ss_pred             EEeecCcCeeE-----eehh------------hhhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccC
Confidence            99999876642     2221            1257999999999999999997 9999999884 55544443332211


Q ss_pred             cccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCc--eeEEEEcCCCCceeeecCCC
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~  462 (513)
                      ....    +.   -|+.+.|.|.. ..|++.+.|..|+|||.... .++..+++..+.  -....|+.+|++|+++++|.
T Consensus       497 Kk~~----~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  497 KKKQ----GK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             cccc----Cc---eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            1000    01   26788888744 34677788999999999755 555777766543  23567888999999999999


Q ss_pred             eEEE
Q 010287          463 VVRR  466 (513)
Q Consensus       463 ~i~~  466 (513)
                      .|++
T Consensus       569 ~VYi  572 (712)
T KOG0283|consen  569 WVYI  572 (712)
T ss_pred             eEEE
Confidence            9999

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.4e-25  Score=173.35  Aligned_cols=317  Identities=14%  Similarity=0.155  Sum_probs=220.8

Q ss_pred             CcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec
Q 010287          101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (513)
Q Consensus       101 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (513)
                      +.|..+..++-...|.+++|+|  +|.+.+++++.+++++.....-.  .....+..+                      
T Consensus        21 ~~f~~i~~l~dsqairav~fhp--~g~lyavgsnskt~ric~yp~l~--~~r~~hea~----------------------   74 (350)
T KOG0641|consen   21 KHFEAINILEDSQAIRAVAFHP--AGGLYAVGSNSKTFRICAYPALI--DLRHAHEAA----------------------   74 (350)
T ss_pred             cceEEEEEecchhheeeEEecC--CCceEEeccCCceEEEEcccccc--Ccccccccc----------------------
Confidence            4455566666668999999977  77899999999999987543211  000000000                      


Q ss_pred             cCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEE
Q 010287          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN  259 (513)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd  259 (513)
                                                           .+....+....+.|.+.|.|.+|+|+|++|++| .|++|++.-
T Consensus        75 -------------------------------------~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~  117 (350)
T KOG0641|consen   75 -------------------------------------KQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP  117 (350)
T ss_pred             -------------------------------------cCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence                                                 000011112236789999999999999999999 799999987


Q ss_pred             cCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC-CCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      ++.......-   ....+.-|.+.|..++|-.+   +..+|++++. |..|.+-|..+++.    ...            
T Consensus       118 fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~----~~a------------  178 (350)
T KOG0641|consen  118 FNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG----FHA------------  178 (350)
T ss_pred             cccccccccC---cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc----cee------------
Confidence            7644322111   11256779999999999643   3256666554 66777778777665    222            


Q ss_pred             cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc--cccccccccccccCCccceeeEEEeCCCCEE
Q 010287          336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH--EHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                      +.+|.+.|.++ ++-++-++++|+. .+|++||++- ...+.++...  .....          -..|.+++..|.|++|
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~gle----------ssavaav~vdpsgrll  246 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLE----------SSAVAAVAVDPSGRLL  246 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcc----------cceeEEEEECCCccee
Confidence            45666777765 4567899999885 9999999996 5555555322  11110          1125689999999999


Q ss_pred             EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCeeEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHL  491 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~  491 (513)
                      ++|-.|....+||++.+ ..++.+..|...|+++.|+|.-.|+++++.|..|++.+-......++... .-+|...+..+
T Consensus       247 ~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~  325 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQC  325 (350)
T ss_pred             eeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEE
Confidence            99999999999999976 66689999999999999999999999999999999922211111122222 33789999999


Q ss_pred             EEeCCCCEEE-EEcCCcEEEEe
Q 010287          492 AWHPSENSIA-CAASNSLYMYY  512 (513)
Q Consensus       492 ~~sp~~~~la-~~~~~~~~i~~  512 (513)
                      .|+|..--++ +..+....+|.
T Consensus       326 rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  326 RWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             EecCccceeeeccCcceEEEec
Confidence            9999976555 44477777763

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.5e-25  Score=212.51  Aligned_cols=263  Identities=18%  Similarity=0.251  Sum_probs=179.1

Q ss_pred             ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEe
Q 010287           53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS  132 (513)
Q Consensus        53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~  132 (513)
                      |+.++.|++|+.....                       ....+.+|.            +.|.+++|+|. ++.+|++|
T Consensus        50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg   93 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG   93 (568)
T ss_pred             CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence            5567778888854322                       335678898            88999999773 25699999


Q ss_pred             ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceee
Q 010287          133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV  212 (513)
Q Consensus       133 s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  212 (513)
                      +.|++|++||+.++..... ..                                                          
T Consensus        94 S~DgtIrIWDi~t~~~~~~-~i----------------------------------------------------------  114 (568)
T PTZ00420         94 SEDLTIRVWEIPHNDESVK-EI----------------------------------------------------------  114 (568)
T ss_pred             eCCCeEEEEECCCCCcccc-cc----------------------------------------------------------
Confidence            9999999999976421000 00                                                          


Q ss_pred             ccCCcccccceeeEeeccccCCeEEEEeccCCCEE-EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe
Q 010287          213 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH  290 (513)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  290 (513)
                              ..+. ..+.+|...|.+++|+|++..+ +++ .|++|++||++++.....        +. |...|.+++|+
T Consensus       115 --------~~p~-~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsws  176 (568)
T PTZ00420        115 --------KDPQ-CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKWN  176 (568)
T ss_pred             --------ccce-EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEEC
Confidence                    0000 0146888999999999998765 566 699999999997764432        22 45679999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C----CeEEE
Q 010287          291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y----MTLKL  365 (513)
Q Consensus       291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~----~~v~i  365 (513)
                      |+| .+|++++.|+.|++||++++..    +..+.++.....       ...+....|++++.+|++++ +    +.|+|
T Consensus       177 pdG-~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~-------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        177 IKG-NLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKN-------TKNIWIDGLGGDDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             CCC-CEEEEEecCCEEEEEECCCCcE----EEEEecccCCce-------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence            999 8999999999999999998765    333443321100       01123334568888888754 3    37999


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR  445 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  445 (513)
                      ||++....++..+..+.....             +......+++.++++|+.|+.|++|++..+......--.+..+...
T Consensus       245 WDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g  311 (568)
T PTZ00420        245 WDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRS  311 (568)
T ss_pred             EECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccc
Confidence            999965667766544433210             1122234568889999999999999998663221111235678889


Q ss_pred             EEEcCCCC
Q 010287          446 QVQTPSRP  453 (513)
Q Consensus       446 ~~~~~~~~  453 (513)
                      ++|.|...
T Consensus       312 ~~f~Pkr~  319 (568)
T PTZ00420        312 FGFLPKQI  319 (568)
T ss_pred             eEEccccc
Confidence            99998744

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.2e-27  Score=201.07  Aligned_cols=284  Identities=12%  Similarity=0.185  Sum_probs=212.5

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      |...+.||.            +.|.+++=+|..- ..+++|+.||.|++||+.+..+...                    
T Consensus        58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~--------------------  104 (433)
T KOG0268|consen   58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRT--------------------  104 (433)
T ss_pred             chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhhe--------------------
Confidence            445567887            9999999977432 4789999999999999988765432                    


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD  251 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  251 (513)
                                                                              +.+|.+.|..|++.. +..|.+|+
T Consensus       105 --------------------------------------------------------f~AH~G~V~Gi~v~~-~~~~tvgd  127 (433)
T KOG0268|consen  105 --------------------------------------------------------FKAHEGLVRGICVTQ-TSFFTVGD  127 (433)
T ss_pred             --------------------------------------------------------eecccCceeeEEecc-cceEEecC
Confidence                                                                    368888899999987 44555568


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      |.+|+.|.++..  ...       ++.+ ...+..+.-+..+ ..+++|++  .|.|||......    +..+.-..   
T Consensus       128 DKtvK~wk~~~~--p~~-------tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~P----v~smswG~---  187 (433)
T KOG0268|consen  128 DKTVKQWKIDGP--PLH-------TILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNP----VSSMSWGA---  187 (433)
T ss_pred             CcceeeeeccCC--cce-------eeec-ccccccccccccc-ccccccCc--eeeecccccCCc----cceeecCC---
Confidence            999999998742  222       2222 4456677776666 78888876  688999865444    33333222   


Q ss_pred             CccccccccccEEEEEEeecCCE-EEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRH-ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~-l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                               ..|.++.|+|-... |+++ +|+.|.+||++. ..+++.+......                ..++|+|.+
T Consensus       188 ---------Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPea  241 (433)
T KOG0268|consen  188 ---------DSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEA  241 (433)
T ss_pred             ---------CceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccc
Confidence                     46999999996654 4454 569999999997 7887766544332                279999988


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL  489 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~  489 (513)
                      -.+++|+.|..++.||++.....+....+|.+.|.++.|+|.|+-+++||.|..|+|+.....-..+  .....--+.|.
T Consensus       242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~  319 (433)
T KOG0268|consen  242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVF  319 (433)
T ss_pred             cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheee
Confidence            8888999999999999998877778899999999999999999999999999999993222211000  00001135799


Q ss_pred             EEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          490 HLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       490 ~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      ++.||-|.+++++|| +.++.+|.|
T Consensus       320 ~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             EEEEeccccEEEecCCCcceeeeec
Confidence            999999999999999 678999975

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.2e-25  Score=213.11  Aligned_cols=241  Identities=13%  Similarity=0.216  Sum_probs=171.7

Q ss_pred             eccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      +.+|...|.+++|+|+ +.+|++| .|++|++||+.++.............+.+|...|.+++|+|++..++++++.|+.
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            4789999999999996 7899998 7999999999864321110000012457899999999999998556789999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      |++||++++...    ..+.             |...|.+++|+|+|.+|++++ ++.|+|||++. +..+..+.+|...
T Consensus       150 IrIWDl~tg~~~----~~i~-------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~  211 (568)
T PTZ00420        150 VNIWDIENEKRA----FQIN-------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG  211 (568)
T ss_pred             EEEEECCCCcEE----EEEe-------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence            999999987642    2221             225699999999999999876 59999999997 7888888888764


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCCC----cEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeee
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      +....          ++...|++++.+|++++.|+    .|+|||++.....+....  .+...+......+++.++++|
T Consensus       212 ~~s~~----------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        212 KNTKN----------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             ceeEE----------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            32110          22345678999999887664    799999996444443333  333444444556678899999


Q ss_pred             cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          459 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       459 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                      +.|+.|++.+-....  ........+..++..++|.|+..
T Consensus       282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence            999999992221111  01111223567889999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7e-26  Score=186.01  Aligned_cols=271  Identities=13%  Similarity=0.156  Sum_probs=199.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCc-eeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      +.|.+|+|+|.. ..+++++|.|++||+|+++.. .....                                        
T Consensus        28 DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~k----------------------------------------   66 (347)
T KOG0647|consen   28 DSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVPK----------------------------------------   66 (347)
T ss_pred             cchheeEecccc-CceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence            889999998843 346778899999999999863 21110                                        


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         ....|.++|.+++|+.+|..+++| .|+.+++||+.+++..    
T Consensus        67 -----------------------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~----  107 (347)
T KOG0647|consen   67 -----------------------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS----  107 (347)
T ss_pred             -----------------------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----
Confidence                                               135778899999999999999998 6999999999987533    


Q ss_pred             ccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                           .+..|..+|.++.|-+... ..|++|+.|.+++.||+|....    +.+++.+             ..+.++.. 
T Consensus       108 -----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p----v~t~~LP-------------eRvYa~Dv-  164 (347)
T KOG0647|consen  108 -----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP----VATLQLP-------------ERVYAADV-  164 (347)
T ss_pred             -----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe----eeeeecc-------------ceeeehhc-
Confidence                 4577999999999987651 3899999999999999997665    4444444             24555544 


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                       -..+++.+. +..|.+|+++.+....+.....-..              -+.+++..+|.+..+.|+-+|.+.+..+..
T Consensus       165 -~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~  229 (347)
T KOG0647|consen  165 -LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDD  229 (347)
T ss_pred             -cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCC
Confidence             245666655 4899999998533333333222111              023778888888889999999999998887


Q ss_pred             CCcc-ceeecCCC---------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          429 GSAE-STTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       429 ~~~~-~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                      +... -.+++-|+         .+|+.++|+|....|++++.||.+.+   |+............|..+|++++|+.+|.
T Consensus       230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F---WDkdar~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF---WDKDARTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE---ecchhhhhhhccCcCCCccceeEecCCCC
Confidence            5332 24555554         35788999999999999999999999   44432223333445789999999999999


Q ss_pred             EEEEEc
Q 010287          499 SIACAA  504 (513)
Q Consensus       499 ~la~~~  504 (513)
                      ++|-+.
T Consensus       307 ifaYA~  312 (347)
T KOG0647|consen  307 IFAYAL  312 (347)
T ss_pred             EEEEEe
Confidence            999553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.9e-26  Score=207.42  Aligned_cols=270  Identities=15%  Similarity=0.236  Sum_probs=213.6

Q ss_pred             EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (513)
Q Consensus        38 V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  117 (513)
                      .+-+.|+ ....||+|... .|++|+..++..+                       ....-++            ..|++
T Consensus       180 ~nlldWs-s~n~laValg~-~vylW~~~s~~v~-----------------------~l~~~~~------------~~vtS  222 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALGQ-SVYLWSASSGSVT-----------------------ELCSFGE------------ELVTS  222 (484)
T ss_pred             hhHhhcc-cCCeEEEEecc-eEEEEecCCCceE-----------------------EeEecCC------------CceEE
Confidence            3456777 45578887643 7999998776631                       1111113            77999


Q ss_pred             EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      +.|+  .+|.+|++|..+|.|.|||..+.+....                                              
T Consensus       223 v~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~----------------------------------------------  254 (484)
T KOG0305|consen  223 VKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRT----------------------------------------------  254 (484)
T ss_pred             EEEC--CCCCEEEEeecCCeEEEEehhhcccccc----------------------------------------------
Confidence            9995  4888999999999999999987653321                                              


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeecc-ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                    +.+ |...|-+++|+  +..+.+| .++.|..+|++..+....       
T Consensus       255 ------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------  295 (484)
T KOG0305|consen  255 ------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------  295 (484)
T ss_pred             ------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------
Confidence                                          123 77889999999  5677778 699999999998776553       


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRH  354 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~  354 (513)
                      .+.+|...|..++|++|+ .++|+|+.|+.+.|||......    .            ..+.+|.+.|..++|+| ...+
T Consensus       296 ~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~------------~~~~~H~aAVKA~awcP~q~~l  358 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----K------------FTFTEHTAAVKALAWCPWQSGL  358 (484)
T ss_pred             hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----c------------EEEeccceeeeEeeeCCCccCc
Confidence            368899999999999999 9999999999999999854333    1            22567789999999999 6678


Q ss_pred             EEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE--eCCCcEEEEecCCC
Q 010287          355 ILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEG  429 (513)
Q Consensus       355 l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~  429 (513)
                      ||+|+   |+.|++||..+ +..+..+.....                |..+.|++..+-|+++  ..++.|.||+..+.
T Consensus       359 LAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~  421 (484)
T KOG0305|consen  359 LATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM  421 (484)
T ss_pred             eEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence            88854   49999999996 777666543332                4589999998766643  36789999999985


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       .....+.+|...|..++++|+|..+++|+.|.++++
T Consensus       422 -~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf  457 (484)
T KOG0305|consen  422 -KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF  457 (484)
T ss_pred             -ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence             566899999999999999999999999999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.4e-26  Score=220.01  Aligned_cols=252  Identities=14%  Similarity=0.183  Sum_probs=185.4

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC--c---------ceeeecccCccccccccCCeEEEEEeCCCCe
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--N---------QSFNIVDVKPANMEDLTEVITSAEFHPTHCN  295 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~--~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (513)
                      ...|.+.|.|+.|++||++||+| +|+.|.+|+....  .         ...+-+. .-..+.+|...|.+++|+|++ .
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~-~  142 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDD-S  142 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCc-c
Confidence            46899999999999999999999 7999999998730  0         0000000 013568899999999999998 9


Q ss_pred             EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCC
Q 010287          296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP  374 (513)
Q Consensus       296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~  374 (513)
                      ++++++.|++|.+||.++.+.    ++.            +.+|.+.|-.+.|.|-|+||++-+ |++|+||++.. -..
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~----~~v------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i  205 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFEL----LKV------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGI  205 (942)
T ss_pred             EEEEecccceEEEEcccccee----eee------------eecccccccceEECCccCeeeeecCCceEEEEEccc-cee
Confidence            999999999999999988744    444            455668899999999999999955 59999999764 445


Q ss_pred             eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe----CCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                      .+.+..+......-.         -+..+.|||||++|++..    .-.++.|.+..+. +.-..+-+|..++..+.|+|
T Consensus       206 ~k~It~pf~~~~~~T---------~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  206 EKSITKPFEESPLTT---------FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             eEeeccchhhCCCcc---------eeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeCh
Confidence            555554443211100         134899999999999764    2346888888766 33478889999999999976


Q ss_pred             C------C-------C----ceeeecCCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          451 S------R-------P----SRPLGSLSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       451 ~------~-------~----~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                      .      .       .    .+|+|+.|+.+.+   |..... .+..-..-+...|.+++|+|||-.|..+| |+++.++
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV---W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV---WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEE---EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            2      1       1    5789999999999   322210 11111122478999999999998877666 6666665

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.8e-25  Score=184.36  Aligned_cols=267  Identities=13%  Similarity=0.194  Sum_probs=199.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|.++.|+|  .+..|+++++||++++|++.....+.                                          
T Consensus        14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------   49 (323)
T KOG1036|consen   14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------   49 (323)
T ss_pred             hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence            7899999975  45588888999999999998764322                                          


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeeccc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                         ...|..++.+++|.++.+.+..+-||.|+.+|++++...      
T Consensus        50 -----------------------------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~------   88 (323)
T KOG1036|consen   50 -----------------------------------KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED------   88 (323)
T ss_pred             -----------------------------------heecCCceeeeeccCCceEEEeccCceEEEEEecCCcce------
Confidence                                               135667899999998655444447999999999977654      


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         .+..|...|.|+.+.+.. ..+++|+.|++|++||.+....    .-.++..             ..|.++..+  +
T Consensus        89 ---~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~----~~~~d~~-------------kkVy~~~v~--g  145 (323)
T KOG1036|consen   89 ---QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV----VGTFDQG-------------KKVYCMDVS--G  145 (323)
T ss_pred             ---eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc----ccccccC-------------ceEEEEecc--C
Confidence               457799999999999877 8999999999999999986332    2222221             368777765  5


Q ss_pred             CEEEE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 010287          353 RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-  430 (513)
Q Consensus       353 ~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-  430 (513)
                      ..|++ +.+..+.+||+++...+.+.....-.              +.+.++++-|++.-.++++-||.|.+=.+.... 
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk--------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~  211 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK--------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE  211 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccce--------------eEEEEEEEecCCCceEEEeecceEEEEccCCchH
Confidence            56666 55699999999974433322211111              113488999988888999999999876655431 


Q ss_pred             --ccceeecCCC---------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287          431 --AESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       431 --~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  499 (513)
                        .....++.|.         .||++++|+|-.+.+|+|+.||.|.+   |++.......+.-.+...|.+++|+.||..
T Consensus       212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~  288 (323)
T KOG1036|consen  212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMDGSL  288 (323)
T ss_pred             HhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccCCCe
Confidence              2224555554         48999999999999999999999999   666544444445556788999999999999


Q ss_pred             EEEEc
Q 010287          500 IACAA  504 (513)
Q Consensus       500 la~~~  504 (513)
                      ||+|+
T Consensus       289 LAia~  293 (323)
T KOG1036|consen  289 LAIAS  293 (323)
T ss_pred             EEEEe
Confidence            99887

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.9e-27  Score=187.11  Aligned_cols=236  Identities=13%  Similarity=0.193  Sum_probs=187.4

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      +.+|.+.|++.+.+.+...-+++ .|-+.++||.-++..+..         -.|..-|..++|+.|. +.|++|+.+..+
T Consensus        55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekll  124 (334)
T KOG0278|consen   55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLL  124 (334)
T ss_pred             eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHh
Confidence            36899999999999888777887 699999999998886643         3488889999999998 999999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      |+||+...+...   +            -+.+|.+.|..+.|....+.|+++.+ ++|++||.++ +..++++.....  
T Consensus       125 rvfdln~p~App---~------------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~--  186 (334)
T KOG0278|consen  125 RVFDLNRPKAPP---K------------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSP--  186 (334)
T ss_pred             hhhhccCCCCCc---h------------hhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCC--
Confidence            999987654321   1            15678899999999998788887655 9999999998 888888876554  


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                                    |+++.++++|++|.++ ..+.|.+||..+...+ ...+. ...|.+...+|+...++.|++|..++
T Consensus       187 --------------VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l-Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~  249 (334)
T KOG0278|consen  187 --------------VTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL-KSYKM-PCNVESASLHPKKEFFVAGGEDFKVY  249 (334)
T ss_pred             --------------CcceeeccCCCEEEEe-cCceeEEeccccccce-eeccC-ccccccccccCCCceEEecCcceEEE
Confidence                          3589999999987654 4578999999876332 22222 23467888899999999999999998


Q ss_pred             E--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          466 R--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       466 ~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .  +...+.    +...+.+|-++|.++.|+|||..-|+|| |++++||+
T Consensus       250 kfDy~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  250 KFDYNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             EEeccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            8  222211    1112467899999999999999999999 77888886

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.7e-25  Score=183.16  Aligned_cols=315  Identities=16%  Similarity=0.249  Sum_probs=220.4

Q ss_pred             cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...|.+.|+++...+. |+|+++|+.||.|.+||++....-...  .+      ...+....-...-.+|.         
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~l------i~k~~c~v~~~h~~~Hk---------  101 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GL------IAKHKCIVAKQHENGHK---------  101 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cc------eeheeeeccccCCccce---------
Confidence            4469999999999996 899999999999999998765421000  00      00000000111234555         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         -.|..+.|.|... .+|.+++-|.+++|||..+.+....+++.                                  
T Consensus       102 ---y~iss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~me----------------------------------  143 (397)
T KOG4283|consen  102 ---YAISSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFKME----------------------------------  143 (397)
T ss_pred             ---eeeeeeEEeeecC-ceeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence               7899999999655 48899999999999999987654433322                                  


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCcc
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                                 +.|.+-+++|-   ..++++| .+-.|++.|+..+..
T Consensus       144 -------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~  180 (397)
T KOG4283|consen  144 -------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF  180 (397)
T ss_pred             -------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence                                                       23556666662   3456667 799999999997764


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcc--ccccccccE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS--FFTEIIASI  343 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v  343 (513)
                      ..        .+.+|.+.|.++.|+|.....|++|+.||.|++||+|.-.-+   .+.++.++...+..  .-..|.+.+
T Consensus       181 sH--------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  181 SH--------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             ee--------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCcccccccccccee
Confidence            43        679999999999999998788999999999999999875322   55666655332222  235688999


Q ss_pred             EEEEEeecCCEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287          344 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR  422 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  422 (513)
                      ..++|+.++.+++++ .+..+++|+..++...+..+..-.          +++......-+. +.+...++---.++.+.
T Consensus       250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~----------~n~~~~~~~~~~-~~~s~vfv~~p~~~~la  318 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII----------HNQTTSFAVHIQ-SMDSDVFVLFPNDGSLA  318 (397)
T ss_pred             eeeeecccchhhhhccCccceEEeecccCccccccccccc----------ccccccceEEEe-ecccceEEEEecCCeEE
Confidence            999999999999985 569999999986333332221100          000000001122 33444444445568899


Q ss_pred             EEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          423 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       423 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++++-.+. .+..+..|...+.+.++.|+-+.+.+|+.|+.|..
T Consensus       319 ll~~~sgs-~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~  361 (397)
T KOG4283|consen  319 LLNLLEGS-FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM  361 (397)
T ss_pred             EEEccCce-EEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence            99988874 44677888888999999999999999999999887

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.8e-25  Score=183.21  Aligned_cols=276  Identities=12%  Similarity=0.140  Sum_probs=208.3

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .+.|+++.|+|.+..|+++++||++++|++......                                    ..+.++.+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------~~~~~~~p   56 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------LKFKHGAP   56 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------------------------hheecCCc
Confidence            589999999999999999999999999998655321                                    11122278


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      +.+.+|.+   ...+++|+.||.|+++|+.++....                                            
T Consensus        57 lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~--------------------------------------------   89 (323)
T KOG1036|consen   57 LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQ--------------------------------------------   89 (323)
T ss_pred             eeeeeccC---CceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence            99999953   4689999999999999999875322                                            


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       +..|...|.|+.+++....+++| -|++|++||.+......      
T Consensus        90 ---------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~------  130 (323)
T KOG1036|consen   90 ---------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG------  130 (323)
T ss_pred             ---------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc------
Confidence                                             35788889999999977788887 69999999998532221      


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                        .+. ....|.++....   +.|+.|+.|..|.+||+|+.....+      ..        -...+-.++|+++-|++.
T Consensus       131 --~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q------~r--------eS~lkyqtR~v~~~pn~e  190 (323)
T KOG1036|consen  131 --TFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQ------RR--------ESSLKYQTRCVALVPNGE  190 (323)
T ss_pred             --ccc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhh------hc--------cccceeEEEEEEEecCCC
Confidence              112 234788887654   5788899999999999998654211      00        012235789999999877


Q ss_pred             EEEEEe-CCeEEEEEccCC---CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          354 HILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       354 ~l~~~~-~~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      -.++++ +|.|.+=.++..   ...-..++.|.....      ..+.+++|.+++|+|-...|+||+.||.|.+||+.+.
T Consensus       191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             ceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            666665 698887666541   133456677765432      2244567889999999999999999999999999987


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeec
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  459 (513)
                       +.+..+......|..++|+.+|..||.++
T Consensus       265 -Krl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  265 -KRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             -hhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence             44466666677899999999999999885

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=5.2e-26  Score=214.88  Aligned_cols=268  Identities=15%  Similarity=0.245  Sum_probs=217.3

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      |...+.|..|+  ..++++|+.+++|.+|+..++..                      ....+.||.            +
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g  250 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G  250 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence            57789999998  56899999999999999876654                      344589999            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.++++.  ..+.++++|+.|+++++||..++.+...                                          
T Consensus       251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~------------------------------------------  286 (537)
T KOG0274|consen  251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHS------------------------------------------  286 (537)
T ss_pred             CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEE------------------------------------------
Confidence            99999994  2467999999999999999999987765                                          


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        +.+|...|.++...+  ..+++| .|.+|++|++.++..+ .    
T Consensus       287 ----------------------------------l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l-~----  325 (537)
T KOG0274|consen  287 ----------------------------------LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACL-N----  325 (537)
T ss_pred             ----------------------------------ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceE-E----
Confidence                                              347777788776543  466666 6999999999966543 2    


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         .+.+|..+|+++..+  + .++++|+.|++|++||+++++.    ++.            +.+|...|.++.+.+. 
T Consensus       326 ---l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~c----l~s------------l~gH~~~V~sl~~~~~-  382 (537)
T KOG0274|consen  326 ---LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKC----LKS------------LSGHTGRVYSLIVDSE-  382 (537)
T ss_pred             ---EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhcee----eee------------ecCCcceEEEEEecCc-
Confidence               345699999999998  4 6899999999999999997776    333            4567789999988765 


Q ss_pred             CEEEEEe-CCeEEEEEccCCC-CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          353 RHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       353 ~~l~~~~-~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      ..+++|+ |+.|++||+++ . +++.++.+|...+                 -.+...+++|++++.|+.|++||..+++
T Consensus       383 ~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  383 NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ceEEeeeeccceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccCc
Confidence            7888887 59999999997 6 8899999888763                 2344467899999999999999999884


Q ss_pred             ccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          431 AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       .+.++++ |...+..+.+.  ...+++++.||.+++
T Consensus       445 -~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  445 -CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL  478 (537)
T ss_pred             -eeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence             4467777 66777777776  567888899999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=193.74  Aligned_cols=279  Identities=18%  Similarity=0.198  Sum_probs=221.6

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.++..+|+  ...+++|+.|+.+.++|...++...+                                         
T Consensus       220 pgi~ald~~~s--~~~ilTGG~d~~av~~d~~s~q~l~~-----------------------------------------  256 (506)
T KOG0289|consen  220 PGITALDIIPS--SSKILTGGEDKTAVLFDKPSNQILAT-----------------------------------------  256 (506)
T ss_pred             CCeeEEeecCC--CCcceecCCCCceEEEecchhhhhhh-----------------------------------------
Confidence            55777777664  35799999999999999887764432                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.||...|..+.++++...++++ .|..|++|..-.....     
T Consensus       257 -----------------------------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-----  296 (506)
T KOG0289|consen  257 -----------------------------------LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-----  296 (506)
T ss_pred             -----------------------------------ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-----
Confidence                                               46888889999999999999998 7999999988654422     


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                         .....|..+|+.+..+|.+ .+|++++.|+++.+.|++++.....    .....          ..-.+++.+|+||
T Consensus       297 ---~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~----vs~~~----------s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  297 ---TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTV----VSDET----------SDVEYTSAAFHPD  358 (506)
T ss_pred             ---cccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEE----Eeecc----------ccceeEEeeEcCC
Confidence               2557899999999999999 9999999999999999999876321    11100          0135899999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      |-++.+|.. +.|+|||+.. +..+..|.+|...               |..++|+.+|-||+++.+|+.|++||++..+
T Consensus       359 gLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~---------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGP---------------VKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ceEEeccCCCceEEEEEcCC-ccccccCCCCCCc---------------eeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            999999885 9999999997 7788999999987               4599999999999999999999999999663


Q ss_pred             ccceeec-CCCCceeEEEEcCCCCceeeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287          431 AESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL  508 (513)
Q Consensus       431 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~  508 (513)
                       ...++. ....++.++.|.+.|.+|+.++.|-.|.+.+ ..+.|  ........|++..+.+.|....+++++++.+.+
T Consensus       423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             -ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhh
Confidence             333333 3345799999999999999999998888832 22222  122244467889999999999999999996655


Q ss_pred             EEE
Q 010287          509 YMY  511 (513)
Q Consensus       509 ~i~  511 (513)
                      +-+
T Consensus       500 l~~  502 (506)
T KOG0289|consen  500 LRL  502 (506)
T ss_pred             eEE
Confidence            443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.6e-26  Score=198.20  Aligned_cols=270  Identities=15%  Similarity=0.251  Sum_probs=194.1

Q ss_pred             cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...|.+.|+.+.+-|. ..+||+++..+.|.|||...........             .+.+....+.||+         
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------~~~~Pdl~L~gH~---------  177 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------GECRPDLRLKGHE---------  177 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------ccCCCceEEEeec---------
Confidence            4679999999999997 5688899999999999987554321000             0223334567887         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.-++++|++... ..|++++.|++|++||+........                                      
T Consensus       178 ---~eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------------------  215 (422)
T KOG0264|consen  178 ---KEGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKEDK--------------------------------------  215 (422)
T ss_pred             ---ccccccccccccc-eeEeeccCCCcEEEEeccccccCCc--------------------------------------
Confidence               5477899987555 4899999999999999986532100                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                     ....+....+|...|..++|++-. ..|+++ +|+.+.|||.++.....
T Consensus       216 -------------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  216 -------------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             -------------------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence                                           001122358999999999999954 455555 79999999999631111


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                            ......|...|.|++|+|-+..+||+|+.|++|.+||+|+...   .+..            +.+|...|.+|.
T Consensus       265 ------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~------------~e~H~dev~~V~  323 (422)
T KOG0264|consen  265 ------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHT------------FEGHEDEVFQVE  323 (422)
T ss_pred             ------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---Ccee------------ccCCCcceEEEE
Confidence                  1256789999999999998889999999999999999998553   2344            455668899999


Q ss_pred             EeecCC-EEEE-EeCCeEEEEEccCCCCC----------eeeeecccccccccccccccCCccceeeEEEeCCCCE-EEE
Q 010287          348 FARNGR-HILS-RDYMTLKLWDINMDSGP----------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VAT  414 (513)
Q Consensus       348 ~sp~~~-~l~~-~~~~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~  414 (513)
                      |||... .|++ |.|+.+.|||+..-++.          ...+..|.+...            .|..+.|+|+..+ |++
T Consensus       324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I~S  391 (422)
T KOG0264|consen  324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTIAS  391 (422)
T ss_pred             eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEEEE
Confidence            999665 5555 44699999999752222          222233333222            2448899998876 557


Q ss_pred             EeCCCcEEEEecCC
Q 010287          415 GSYSNLFRVFGCSE  428 (513)
Q Consensus       415 ~~~dg~i~vwd~~~  428 (513)
                      .+.|+.+.||.+..
T Consensus       392 vaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  392 VAEDNILQIWQMAE  405 (422)
T ss_pred             ecCCceEEEeeccc
Confidence            88999999999873

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=187.62  Aligned_cols=321  Identities=17%  Similarity=0.243  Sum_probs=229.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ++.+|.+.|..++-......+.+++.|.+.+||.++++..                       ...+.||.         
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~---------  190 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT---------  190 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc---------
Confidence            6779999999999888888999999999999999998874                       36789999         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|++|+|++  .+.++++++.|++-.||...-.-.....   ..+........          ...+ |.      
T Consensus       191 ---GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~---~a~~~hSsEeE----------~e~s-De------  245 (481)
T KOG0300|consen  191 ---GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSN---NAPSDHSSEEE----------EEHS-DE------  245 (481)
T ss_pred             ---cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCC---CCCCCCCchhh----------hhcc-cc------
Confidence               8899999976  4558999999999999984322110000   00000000000          0000 00      


Q ss_pred             cCCCCCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                         ...+..-+. .....|+++              ...+.+|...|.+..|...|+.++++ -|.+..+||.+++....
T Consensus       246 ---~~~d~d~~~~sD~~tiRvP--------------l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~  308 (481)
T KOG0300|consen  246 ---HNRDTDSSEKSDGHTIRVP--------------LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN  308 (481)
T ss_pred             ---cccccccccccCCceeeee--------------eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec
Confidence               000000000 011133331              12257899999999999999999999 59999999999877542


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                              .+.+|....+.++-+|.. +++++++.|.+.++||++..-.   .+            ..|.+|...|+++.
T Consensus       309 --------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~---sV------------~VFQGHtdtVTS~v  364 (481)
T KOG0300|consen  309 --------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ---SV------------AVFQGHTDTVTSVV  364 (481)
T ss_pred             --------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc---ee------------eeecccccceeEEE
Confidence                    578999999999999998 9999999999999999983211   12            23667778999999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |.-+.+ +++|+| .+|++||+++...++.++......                ..++.+..++.++.--++..|++||+
T Consensus       365 F~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  365 FNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             EecCCc-eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEec
Confidence            997655 566665 999999999866778888765542                37888888889999999999999999


Q ss_pred             CCCCcc---ceeecCCCCceeEEEEcCCCC--ceeeecCCCeEE
Q 010287          427 SEGSAE---STTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVR  465 (513)
Q Consensus       427 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~  465 (513)
                      ......   ...-.+|..-|.+++|..+..  -|.+++.|+.+.
T Consensus       428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~  471 (481)
T KOG0300|consen  428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA  471 (481)
T ss_pred             CCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence            843111   123458888999999965433  466777777654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.2e-26  Score=182.34  Aligned_cols=250  Identities=17%  Similarity=0.199  Sum_probs=189.9

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~  305 (513)
                      ...|.+.|..+...--|+.|+++ +|++|+|+..+...+...+     ..+.+|.++|..++|. |.-+.+||+++.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            46888989988888889999999 8999999999877652222     3789999999999995 433399999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEe-CCeEEEEEccCCCCC--eeeeec
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGP--VATFQV  380 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~-~~~v~iwd~~~~~~~--~~~~~~  380 (513)
                      |.||.-.+++-..  ...            +..|.+.|++++|.|.  |-.|++++ ||.|.|.+.+..+.-  .+....
T Consensus        82 VIiWke~~g~w~k--~~e------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   82 VIIWKEENGRWTK--AYE------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             EEEEecCCCchhh--hhh------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            9999987764311  111            4567799999999995  45666655 699999999864221  233345


Q ss_pred             ccccccccccccccCCccceeeEEEeCC---C-----------CEEEEEeCCCcEEEEecCCCCccc-eeecCCCCceeE
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRR  445 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~  445 (513)
                      |...               |++++|.|.   |           +.|++|+.|+.|+||+..++.-+. .++++|.+.|+.
T Consensus       148 H~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  148 HEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD  212 (299)
T ss_pred             cccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence            5544               458888886   4           469999999999999998864343 569999999999


Q ss_pred             EEEcCCC----CceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE-cCCcEEEEe
Q 010287          446 QVQTPSR----PSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA-ASNSLYMYY  512 (513)
Q Consensus       446 ~~~~~~~----~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~-~~~~~~i~~  512 (513)
                      +++.|.-    .+||+++.||.+.| .+..+ .+........++...+..++||+.|+.||++ ++|.+.+|.
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999874    47999999999999 22221 1111122233478899999999999999955 588888884

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.4e-25  Score=200.62  Aligned_cols=330  Identities=16%  Similarity=0.220  Sum_probs=233.0

Q ss_pred             cceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287           20 SQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (513)
Q Consensus        20 ~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   99 (513)
                      .+.|...+...+.+|++.|.||+.+|.|.+||+|+.||+|+||.+.++..+                             
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------------  435 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------------  435 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------------
Confidence            356777777889999999999999999999999999999999999988752                             


Q ss_pred             CCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCcee
Q 010287          100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY  179 (513)
Q Consensus       100 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (513)
                             +.....+.|.+|+|+|..+-..|+++-.+. +.|-+..-|......  ..  ...++..              
T Consensus       436 -------r~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~t--~ell~~~--------------  489 (733)
T KOG0650|consen  436 -------RTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--PT--KELLASA--------------  489 (733)
T ss_pred             -------EEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--ch--hhhhhcC--------------
Confidence                   222222669999999977765666654444 666655444211100  00  0000000              


Q ss_pred             ccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE----cCCeE
Q 010287          180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRI  255 (513)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~d~~i  255 (513)
                       |                 -....+..+..|.-...+......+.   .-.|...|..+.|+..|.+|++.    ....|
T Consensus       490 -~-----------------~~~~p~~~~~~W~~~~~~e~~~~v~~---~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  490 -P-----------------NESEPDAAVVTWSRASLDELEKGVCI---VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             -C-----------------CccCCcccceeechhhhhhhccceEE---EEecCCccceeeeecCCceEEEeccCCCcceE
Confidence             0                 00112234445544333322222222   24678889999999999999985    25778


Q ss_pred             EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      .|+++.....+.        .+....+.|.++.|+|..+ +|+.+ ....|++||+....+..+    +..         
T Consensus       549 liHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~p-~lfVa-Tq~~vRiYdL~kqelvKk----L~t---------  605 (733)
T KOG0650|consen  549 LIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSKP-YLFVA-TQRSVRIYDLSKQELVKK----LLT---------  605 (733)
T ss_pred             EEEecccccccC--------chhhcCCceeEEEecCCCc-eEEEE-eccceEEEehhHHHHHHH----Hhc---------
Confidence            899987544321        4445567899999999984 44433 568899999987665322    211         


Q ss_pred             cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                         ....|.+++.+|.|..|+.|+. +.+..||+....++.+++..|...               +++++|++.-.++++
T Consensus       606 ---g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---------------vr~Va~H~ryPLfas  667 (733)
T KOG0650|consen  606 ---GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---------------VRSVAFHKRYPLFAS  667 (733)
T ss_pred             ---CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---------------hhhhhhccccceeee
Confidence               1247999999999999988875 999999999878899999999876               448999999999999


Q ss_pred             EeCCCcEEEEecCC------CCcc--ceeecCCCCc----eeEEEEcCCCCceeeecCCCeEEE
Q 010287          415 GSYSNLFRVFGCSE------GSAE--STTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       415 ~~~dg~i~vwd~~~------~~~~--~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |+.||++.||.-.-      ...+  +..+.+|...    |....|+|...+|.+++.||.|++
T Consensus       668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl  731 (733)
T KOG0650|consen  668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL  731 (733)
T ss_pred             ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence            99999999884322      1111  2566677655    788889999999999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=184.32  Aligned_cols=341  Identities=16%  Similarity=0.275  Sum_probs=235.3

Q ss_pred             CCCCCCcccccccccccccceeccccccccc------cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccC
Q 010287            2 DNGGGSSEAAAQPLEWKFSQVFGERTAGEEV------QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR   75 (513)
Q Consensus         2 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~   75 (513)
                      ++|+-+.+.......|++.-+.+........      .-..-...+.|||||.-|++-+.|..+.+|++.........  
T Consensus        10 e~~gek~~ede~~~s~n~~y~qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~--   87 (406)
T KOG2919|consen   10 EDGGEKDDEDEKKKSWNFGYVQGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--   87 (406)
T ss_pred             ccCCccCcccchhccCccceeecceeccCceEEeccCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCC--
Confidence            3454455555677888864332322111100      01123456789999999999999999999997432210000  


Q ss_pred             ccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEee-----cCCCceEEEeecCCeEEEEEccCceeee
Q 010287           76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKK  150 (513)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~-----~~~~~~l~s~s~d~~i~vw~~~~~~~~~  150 (513)
                         ......+.++.+++.   .              ...|..-+|-+     .++..++++++.|.-|++||.-+|+...
T Consensus        88 ---~~~~~~~~~~~~r~~---e--------------g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra  147 (406)
T KOG2919|consen   88 ---DGPLNFSKHLSYRYQ---E--------------GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA  147 (406)
T ss_pred             ---CCccccccceeEEec---c--------------CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc
Confidence               000001111122211   1              15588888864     3456688999999999999999998654


Q ss_pred             eeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecc
Q 010287          151 VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA  230 (513)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  230 (513)
                      ....                                                                          ..
T Consensus       148 Sy~~--------------------------------------------------------------------------yd  153 (406)
T KOG2919|consen  148 SYRA--------------------------------------------------------------------------YD  153 (406)
T ss_pred             chhh--------------------------------------------------------------------------hh
Confidence            3221                                                                          01


Q ss_pred             cc---CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          231 HD---YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       231 h~---~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      |.   ....+++|+|||.+|++|....|+++|+....+...........-.+..+-|.+++|+|.....++.++....+-
T Consensus       154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g  233 (406)
T KOG2919|consen  154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG  233 (406)
T ss_pred             hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence            11   224689999999999999999999999954444333221111112334677899999999877999999999998


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      ||.-..+..    +..            +-+|.+.|+.++|.++|..|++|..  ..|..||++....++..+..|....
T Consensus       234 iy~~~~~~p----l~l------------lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T  297 (406)
T KOG2919|consen  234 IYNDDGRRP----LQL------------LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT  297 (406)
T ss_pred             eEecCCCCc----eee------------ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence            887655544    222            4467789999999999999999874  8999999998778888887776522


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                      +        +.|    -....|++++|++|+.||.|++||++........+..+...++.++++|--..+|+++-.+...
T Consensus       298 N--------QRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~  365 (406)
T KOG2919|consen  298 N--------QRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK  365 (406)
T ss_pred             c--------ceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence            1        111    3566799999999999999999999985566678888999999999999999999987666555


Q ss_pred             E
Q 010287          466 R  466 (513)
Q Consensus       466 ~  466 (513)
                      .
T Consensus       366 ~  366 (406)
T KOG2919|consen  366 Y  366 (406)
T ss_pred             C
Confidence            5

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.2e-26  Score=181.16  Aligned_cols=262  Identities=16%  Similarity=0.223  Sum_probs=199.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+.+|.+.|..+..+--|++|||++.|++|+|+.+.....                    .....+|.||.         
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~---------   56 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS---------   56 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence            4668999999999998999999999999999999876542                    13557899999         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ++|..++|....-|.+|++++.||.|.||.-++++..+..+                                    
T Consensus        57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e------------------------------------   97 (299)
T KOG1332|consen   57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE------------------------------------   97 (299)
T ss_pred             ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh------------------------------------
Confidence               99999999644468899999999999999998875333211                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                            ...|...|++++|.|.  |-.|+++ +||.|.+.+.+....-
T Consensus        98 --------------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w  139 (299)
T KOG1332|consen   98 --------------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW  139 (299)
T ss_pred             --------------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc
Confidence                                                  2478888999999985  6677777 7999999999865221


Q ss_pred             eeecccCccccccccCCeEEEEEeCC---C----------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      ..     +.....|.-.|++++|.|.   |          .+.|++|+.|..|+||+..++.-..  -            
T Consensus       140 ~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e------------  200 (299)
T KOG1332|consen  140 TT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--E------------  200 (299)
T ss_pred             cc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--h------------
Confidence            11     1234678999999999885   2          1469999999999999988763211  1            


Q ss_pred             cccccccccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          334 SFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                      ..+.+|.+.|+.++|.|.-    .+|++++. |+|.||..+.+..+-+.-..+.-.             ..++.+.||..
T Consensus       201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-------------~~~w~vSWS~s  267 (299)
T KOG1332|consen  201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-------------DVVWRVSWSLS  267 (299)
T ss_pred             hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-------------cceEEEEEecc
Confidence            1257788999999999953    57888875 999999987432222211111111             11568999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q 010287          409 GGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      |+.|+.++.|+.|.+|.-...
T Consensus       268 Gn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  268 GNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             ccEEEEecCCcEEEEEEeCCC
Confidence            999999999999999976543

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.1e-24  Score=205.79  Aligned_cols=235  Identities=14%  Similarity=0.162  Sum_probs=171.7

Q ss_pred             eccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      +.+|.+.|.+++|+| ++++|++| .|++|++||+.+........ .....+.+|...|.+++|+|++.++|++++.|+.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~-~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC-cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            468999999999999 78899998 79999999997643210000 0002567899999999999986579999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      |++||++++..    ...            +.+|...|.+++|+|++.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus       150 VrIWDl~tg~~----~~~------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~  212 (493)
T PTZ00421        150 VNVWDVERGKA----VEV------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA  212 (493)
T ss_pred             EEEEECCCCeE----EEE------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence            99999988754    222            3445578999999999999999875 9999999997 7778888777653


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEe----CCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCCCceeeec
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~  459 (513)
                      .              ...+.|.+++..+++++    .|+.|++||+++..........+. ..+....++++++.|++++
T Consensus       213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence            2              12577888888877654    479999999987654444444333 3455667899999998887


Q ss_pred             -CCCeEEEecCCCCCccccC-CccccccCCeeEEEEeCCC
Q 010287          460 -LSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPSE  497 (513)
Q Consensus       460 -~d~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~  497 (513)
                       .|+.|++   ++....... .....+..++..++|.|..
T Consensus       279 kgDg~Iri---wdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        279 KGEGNIRC---FELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eCCCeEEE---EEeeCCceEEEeeccCCCCCcceEecccc
Confidence             4999999   222211111 1112235567788887764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=9.2e-27  Score=199.04  Aligned_cols=274  Identities=21%  Similarity=0.296  Sum_probs=207.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.++.+.|.+  +...|++++.|..|++|++...+......                                       
T Consensus       176 gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t---------------------------------------  214 (459)
T KOG0288|consen  176 GEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELIST---------------------------------------  214 (459)
T ss_pred             cccceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhhhh---------------------------------------
Confidence            8899999966  54589999999999999998765222111                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+..+.|+++.|.++++.++++ .|+.+++|++...+...    
T Consensus       215 -----------------------------------LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~----  255 (459)
T KOG0288|consen  215 -----------------------------------LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH----  255 (459)
T ss_pred             -----------------------------------hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh----
Confidence                                               23445679999999999988887 79999999998655432    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          ++.+|++.|+++.|.... ..+++|+.|.+|++||+....+....   +.+              ..+..|..+  
T Consensus       256 ----TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~--------------S~cnDI~~~--  311 (459)
T KOG0288|consen  256 ----TLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV---LPG--------------SQCNDIVCS--  311 (459)
T ss_pred             ----hhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc---ccc--------------ccccceEec--
Confidence                678999999999999886 56999999999999999885542211   111              235555554  


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      ...+++|. |+.|++||++. ..+......+..                |+++..++++..|.+++.|.++.+.|+++. 
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt~-  373 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRTK-  373 (459)
T ss_pred             ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeecccc-
Confidence            45666676 48999999996 777777776663                469999999999999999999999999976 


Q ss_pred             ccceeecCC----CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccC-CeeEEEEeCCCCEEEEEc
Q 010287          431 AESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSM-KLLHLAWHPSENSIACAA  504 (513)
Q Consensus       431 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~~sp~~~~la~~~  504 (513)
                      .+..++.+.    ...++.++|||++.|+|+||.||.|+|   |...+..+...... ++. .|++++|+|.|..|++++
T Consensus       374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            444555432    234789999999999999999999999   44432222222221 222 699999999999999887


Q ss_pred             -CCcEEEE
Q 010287          505 -SNSLYMY  511 (513)
Q Consensus       505 -~~~~~i~  511 (513)
                       ...+.+|
T Consensus       451 k~~~v~lW  458 (459)
T KOG0288|consen  451 KQKAVTLW  458 (459)
T ss_pred             CCcceEec
Confidence             5555555

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.6e-25  Score=181.41  Aligned_cols=254  Identities=17%  Similarity=0.311  Sum_probs=189.4

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      +...|.+.+.|      .+..|..+|+|++.+  |.|+|+|+.|-+|+|||+......                      
T Consensus        27 ~s~~~~l~~lF------~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql----------------------   76 (362)
T KOG0294|consen   27 DSVKPTLKPLF------AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL----------------------   76 (362)
T ss_pred             cccceeeeccc------cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh----------------------
Confidence            44455555554      366799999999976  789999999999999998766542                      


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                       ..+-.|.            +.|+++.|.+......|++|+.||.|.+|++..-.+...                     
T Consensus        77 -g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s---------------------  122 (362)
T KOG0294|consen   77 -GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS---------------------  122 (362)
T ss_pred             -cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------
Confidence             3455566            889999997644344899999999999999987654332                     


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  251 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  251 (513)
                                                                             +.+|.+.|+.++.+|.+++-++- .
T Consensus       123 -------------------------------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen  123 -------------------------------------------------------LKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             -------------------------------------------------------ecccccccceeEecCCCceEEEEcC
Confidence                                                                   46888889999999999887765 8


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      |+.+++||+-+++..+.+      .+   ....+.+.|+|.| ..|+.+.. ..|-+|.+.+..+.    .....+    
T Consensus       148 D~~lr~WNLV~Gr~a~v~------~L---~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~----~~i~~~----  208 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVL------NL---KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVF----REIENP----  208 (362)
T ss_pred             CceeeeehhhcCccceee------cc---CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHh----hhhhcc----
Confidence            999999999988765432      11   2334559999999 66666554 56888988775541    111111    


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE--EeCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LSGD  408 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~  408 (513)
                               ..+.++.|- ++..|++|. ++.|.+||... ..+...+.+|...+.               ++.  -.|+
T Consensus       209 ---------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~  262 (362)
T KOG0294|consen  209 ---------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPE  262 (362)
T ss_pred             ---------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCC
Confidence                     236666665 555666655 49999999996 889999999987643               343  3567


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC
Q 010287          409 GGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.+|++++.||.|++||++...
T Consensus       263 ~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  263 HEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             ceEEEEeccCceEEEEEccccc
Confidence            8899999999999999998653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.5e-26  Score=204.73  Aligned_cols=251  Identities=19%  Similarity=0.243  Sum_probs=188.8

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc-ceeeecccCccccccccCCeEEEEE-eCCCCeEEEEEeCCC
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKG  304 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~dg  304 (513)
                      +..|.+.|+.++...+++.|+++ .|-+|++|+..... -+.       ..+..|.+.|.|+++ .++. .++|+|+.|+
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-------stir~H~DYVkcla~~ak~~-~lvaSgGLD~  140 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-------STIRTHKDYVKCLAYIAKNN-ELVASGGLDR  140 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------hhhhcccchheeeeecccCc-eeEEecCCCc
Confidence            46888999999999999999998 79999999998664 122       267889999999999 6666 8999999999


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      .|.+||+.++..  +.+..++....   .....+++.+|++++.++.|..|++|+- +.+++||.++ .+.+..+++|..
T Consensus       141 ~IflWDin~~~~--~l~~s~n~~t~---~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTd  214 (735)
T KOG0308|consen  141 KIFLWDINTGTA--TLVASFNNVTV---NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTD  214 (735)
T ss_pred             cEEEEEccCcch--hhhhhcccccc---ccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeeecccc
Confidence            999999998732  11122221111   1112377889999999999988888775 9999999998 777888889987


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      .+               ..+..++||..+++++.||+|++||+... .-+.++..|...|+++..+|+-..+.+|+.||.
T Consensus       215 NV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  215 NV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             ce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence            63               48899999999999999999999999866 334789999999999999999999999999999


Q ss_pred             EEEecCCCCCccccCCccccccCCeeEEEEeCCCCE-EEEEcCCcEEEE
Q 010287          464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS-IACAASNSLYMY  511 (513)
Q Consensus       464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~-la~~~~~~~~i~  511 (513)
                      |....-..+.   .......-..+|..+..+...+- -++..+..+.-|
T Consensus       279 i~~Tdl~n~~---~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  279 IYRTDLRNPA---KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             EEecccCCch---hheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence            9982222221   11111222445566655543332 333335555444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=208.67  Aligned_cols=254  Identities=15%  Similarity=0.217  Sum_probs=201.9

Q ss_pred             cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (513)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (513)
                      ...|+..+.  ........+|.+.|.+++|..-+.+|++|+.|.+++|||..+++.                       .
T Consensus       230 l~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~  284 (537)
T KOG0274|consen  230 LHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------T  284 (537)
T ss_pred             eEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------E
Confidence            347877774  334445889999999999998888999999999999999888774                       4


Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      ..+.+|.            +.|.++...    ...+++|+.|.+|++|+++++.+..+                      
T Consensus       285 ~~l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l----------------------  326 (537)
T KOG0274|consen  285 HSLQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL----------------------  326 (537)
T ss_pred             EEecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE----------------------
Confidence            7788999            889999873    34788889999999999998876553                      


Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  252 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d  252 (513)
                                                                            +.+|.+.|.++..+  +.++++| .|
T Consensus       327 ------------------------------------------------------~~~h~~~V~~v~~~--~~~lvsgs~d  350 (537)
T KOG0274|consen  327 ------------------------------------------------------LRGHTGPVNCVQLD--EPLLVSGSYD  350 (537)
T ss_pred             ------------------------------------------------------eccccccEEEEEec--CCEEEEEecC
Confidence                                                                  34588999999988  7788888 79


Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc-ccccccceeeccccCCC
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~  331 (513)
                      ++|++||+.+++.+.        .+.+|...|.++.+.+.  ..+++|+.|+.|++||+++. +.    +.++.      
T Consensus       351 ~~v~VW~~~~~~cl~--------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~tl~------  410 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLK--------SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHTLQ------  410 (537)
T ss_pred             ceEEEEEhhhceeee--------eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhhhc------
Confidence            999999999666443        67899999999988775  57999999999999999987 43    44444      


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc-cccccccccccccCCccceeeEEEeCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                            +|.+-+..+.+  .+++|++++ |++|++||... ++.++.+.++ ...               |+.+++.  .
T Consensus       411 ------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~  464 (537)
T KOG0274|consen  411 ------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--K  464 (537)
T ss_pred             ------CCccccccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--c
Confidence                  44455654443  578888876 59999999996 8888888874 222               2344443  4


Q ss_pred             CEEEEEeCCCcEEEEecCCCCcc
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      ..+++++.||.+++||++++...
T Consensus       465 ~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             ceEEEEecCCeeEEEecccCchh
Confidence            67889999999999999988544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=3.6e-25  Score=192.02  Aligned_cols=231  Identities=18%  Similarity=0.279  Sum_probs=169.5

Q ss_pred             cccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287          104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (513)
Q Consensus       104 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (513)
                      +-...+.|.+.|+.+++.|... ..+++.+..+.+.|||..+-.-.......                            
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~----------------------------  166 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPKASGE----------------------------  166 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCccccccc----------------------------
Confidence            3334455668999999998543 57777899999999998764321110000                            


Q ss_pred             CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcC
Q 010287          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLE  261 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~  261 (513)
                                         ....                   ..+.+|...-.+++|++. .-.|+++ +|++|++||+.
T Consensus       167 -------------------~~Pd-------------------l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  167 -------------------CRPD-------------------LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             -------------------CCCc-------------------eEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence                               0001                   124688887788999985 3355555 79999999998


Q ss_pred             CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      .....-.... ....+.+|...|..++|++....+|++++.|+.+.|||+|++..  +...            ...+|.+
T Consensus       209 ~~~~~~~~~~-p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~------------~~~ah~~  273 (422)
T KOG0264|consen  209 AESKEDKVVD-PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSH------------SVKAHSA  273 (422)
T ss_pred             ccccCCcccc-ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcc------------cccccCC
Confidence            6554211111 01356889999999999998878999999999999999997311  1111            2456779


Q ss_pred             cEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCC
Q 010287          342 SISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS  418 (513)
Q Consensus       342 ~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d  418 (513)
                      .|.|++|+| ++..||+|+ |++|.+||+++-.+++.++.+|...               |+.+.|+|... .|++++.|
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---------------v~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---------------VFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc---------------eEEEEeCCCCCceeEecccC
Confidence            999999999 556666777 6999999999878889999999876               56999999764 67888899


Q ss_pred             CcEEEEecCCCCc
Q 010287          419 NLFRVFGCSEGSA  431 (513)
Q Consensus       419 g~i~vwd~~~~~~  431 (513)
                      +.+.+||+..-..
T Consensus       339 ~rl~vWDls~ig~  351 (422)
T KOG0264|consen  339 RRLNVWDLSRIGE  351 (422)
T ss_pred             CcEEEEecccccc
Confidence            9999999986433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=8.4e-25  Score=180.32  Aligned_cols=295  Identities=16%  Similarity=0.202  Sum_probs=205.0

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .++.+-+|+  +||.++++|+.|..|+|.|++.--.+. .....                                    
T Consensus       113 ~~cR~aafs--~DG~lvATGsaD~SIKildvermlaks-~~~em------------------------------------  153 (430)
T KOG0640|consen  113 SPCRAAAFS--PDGSLVATGSADASIKILDVERMLAKS-KPKEM------------------------------------  153 (430)
T ss_pred             cceeeeeeC--CCCcEEEccCCcceEEEeehhhhhhhc-chhhh------------------------------------
Confidence            889999994  599999999999999999997421111 00000                                    


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                          ..++........+ .+..|.++|+++.|+|....|++| .|++|+++|+........   
T Consensus       154 --------------------~~~~~qa~hPvIR-TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA---  209 (430)
T KOG0640|consen  154 --------------------ISGDTQARHPVIR-TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA---  209 (430)
T ss_pred             --------------------ccCCcccCCceEe-ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH---
Confidence                                0000000011222 257899999999999999999999 799999999974322110   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                         ...-....+|.++.|+|.| .+++.|..-..+++||+.+-+....       .+      .-.+|.+.|+++.+++.
T Consensus       210 ---~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------an------Pd~qht~ai~~V~Ys~t  272 (430)
T KOG0640|consen  210 ---FKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------AN------PDDQHTGAITQVRYSST  272 (430)
T ss_pred             ---HHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------cC------cccccccceeEEEecCC
Confidence               0112235789999999999 8999999999999999998664211       11      13668899999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +++.++++. |.|++||--+ ++++.++. .|.+.              .|.+..|..+++|+++.+.|..+++|.+.++
T Consensus       273 ~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  273 GSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            999999985 9999999876 77777764 34432              1458899999999999999999999999998


Q ss_pred             CccceeecCCC--C---ceeE--------EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          430 SAESTTLEASK--N---PMRR--------QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       430 ~~~~~~~~~~~--~---~v~~--------~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      ..+ ..+.+..  +   --..        ....||....-.+++|..         .........++|.+.+..+.-||.
T Consensus       338 R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR---------tadr~~l~slgHn~a~R~i~HSP~  407 (430)
T KOG0640|consen  338 RML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR---------TADRVALLSLGHNGAVRWIVHSPV  407 (430)
T ss_pred             ceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc---------chhhhhhcccCCCCCceEEEeCCC
Confidence            443 4443321  1   1112        233444433333333211         011222345579999999999999


Q ss_pred             CCEEEEEc-CCcEEEEe
Q 010287          497 ENSIACAA-SNSLYMYY  512 (513)
Q Consensus       497 ~~~la~~~-~~~~~i~~  512 (513)
                      +..+.+++ +-..++|+
T Consensus       408 ~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  408 EPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCceeeecccceeeeee
Confidence            99988887 44666664

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.8e-24  Score=175.86  Aligned_cols=270  Identities=12%  Similarity=0.224  Sum_probs=204.6

Q ss_pred             EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCce
Q 010287           49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL  128 (513)
Q Consensus        49 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  128 (513)
                      .|++|++...|.=+++.-...           .+.-+..|.+.....+.+|.            .+|++++.    ++.+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~   55 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY   55 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEe----ccee
Confidence            477888887777777643321           11112234444455678888            89999999    5679


Q ss_pred             EEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCcee
Q 010287          129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR  208 (513)
Q Consensus       129 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  208 (513)
                      +++|+.|-+|+|||+........                                                         
T Consensus        56 ~aSGssDetI~IYDm~k~~qlg~---------------------------------------------------------   78 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQLGI---------------------------------------------------------   78 (362)
T ss_pred             EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence            99999999999999987642211                                                         


Q ss_pred             ceeeccCCcccccceeeEeeccccCCeEEEEeccCCC--EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE
Q 010287          209 LPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  285 (513)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  285 (513)
                                         +..|.+.|+++.|.++-.  .|++| +||.|.+|+...-. +..       .+.+|...|+
T Consensus        79 -------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~-------slK~H~~~Vt  131 (362)
T KOG0294|consen   79 -------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLK-------SLKAHKGQVT  131 (362)
T ss_pred             -------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eee-------eecccccccc
Confidence                               346788899999998754  77887 89999999987543 322       6788999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEE
Q 010287          286 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL  365 (513)
Q Consensus       286 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~i  365 (513)
                      .++.+|.+ ++-++.+.|+.+++||+-+|+.    ...+...             ...+.+.|+|.|.+++.+....|-+
T Consensus       132 ~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~i  193 (362)
T KOG0294|consen  132 DLSIHPSG-KLALSVGGDQVLRTWNLVRGRV----AFVLNLK-------------NKATLVSWSPQGDHFVVSGRNKIDI  193 (362)
T ss_pred             eeEecCCC-ceEEEEcCCceeeeehhhcCcc----ceeeccC-------------CcceeeEEcCCCCEEEEEeccEEEE
Confidence            99999999 9999999999999999988765    2222222             2345599999999888887788999


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR  445 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  445 (513)
                      |.+.+ ......+.....                +.++.|- ++.+|++|++|+.|.+||.... .....+.+|...|..
T Consensus       194 ~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~  254 (362)
T KOG0294|consen  194 YQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKD  254 (362)
T ss_pred             Eeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheee
Confidence            99986 554444433311                1244444 6778999999999999999875 555888999999998


Q ss_pred             EEE--cCCCCceeeecCCCeEEE
Q 010287          446 QVQ--TPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       446 ~~~--~~~~~~l~~~~~d~~i~~  466 (513)
                      +.+  .|++.+|+++|.||.|++
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEE
Confidence            874  678899999999999999

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=188.44  Aligned_cols=295  Identities=15%  Similarity=0.157  Sum_probs=211.1

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .+.|++|.|+|...+|++++.||+++||.+.+....                     ..+.+.-..            .+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP  259 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP  259 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence            579999999999999999999999999998765531                     111111112            67


Q ss_pred             ceeEEEeecCCCc-eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       115 i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      |.+.+|.|  +|. .+++++....+..||+.+.+...+......+.+.            -....+++++.++       
T Consensus       260 i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~------------~e~FeVShd~~fi-------  318 (514)
T KOG2055|consen  260 IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS------------MERFEVSHDSNFI-------  318 (514)
T ss_pred             cceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccch------------hheeEecCCCCeE-------
Confidence            99999976  666 8888999999999999998776654443322111            1134566777755       


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                           +..+..|.|.+....+.+.+...        .-.+.|..++|+.+++.|+++ .+|.|.+||++.........  
T Consensus       319 -----a~~G~~G~I~lLhakT~eli~s~--------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--  383 (514)
T KOG2055|consen  319 -----AIAGNNGHIHLLHAKTKELITSF--------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV--  383 (514)
T ss_pred             -----EEcccCceEEeehhhhhhhhhee--------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--
Confidence                 77888889988777666653322        223568999999999988876 79999999999764333221  


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                           ....-.=++++.++++ .+||+|+..|.|.|||..+....          ..+.+...+......|++++|+||.
T Consensus       384 -----D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s----------~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  384 -----DDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS----------TNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             -----ecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc----------CCCCchhhhhhhheeeeeeeeCcch
Confidence                 1111223577788998 89999999999999997653221          1111111233344689999999999


Q ss_pred             CEEEEEeC---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          353 RHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       353 ~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      ++|+.++.   ..+++-.+.+ ......++.....            +.-|++++|||.+.+|+.|..+|.+.+|.+.
T Consensus       448 qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n~~------------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  448 QILAIASRVKKNALRLVHVPS-CTVFSNFPTSNTK------------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhhhccccceEEEeccc-eeeeccCCCCCCc------------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99998763   8899988875 5555555444332            2236699999999999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=181.59  Aligned_cols=298  Identities=16%  Similarity=0.275  Sum_probs=229.1

Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      .+++..++.||.            +.|..++--  .....+.+++.|.+.+||.++++.|...                 
T Consensus       137 ~~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~-----------------  185 (481)
T KOG0300|consen  137 KFRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLAT-----------------  185 (481)
T ss_pred             eEeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceee-----------------
Confidence            345667888998            999999884  3344788899999999999999886542                 


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                 ..+|.+.|++++|++.+.+++
T Consensus       186 -----------------------------------------------------------Y~GH~GSVNsikfh~s~~L~l  206 (481)
T KOG0300|consen  186 -----------------------------------------------------------YTGHTGSVNSIKFHNSGLLLL  206 (481)
T ss_pred             -----------------------------------------------------------ecccccceeeEEeccccceEE
Confidence                                                                       258999999999999999999


Q ss_pred             EE-cCCeEEEEEcCC----Ccc----------ee------------------eecccCccccccccCCeEEEEEeCCCCe
Q 010287          249 SA-DDLRINLWNLEI----SNQ----------SF------------------NIVDVKPANMEDLTEVITSAEFHPTHCN  295 (513)
Q Consensus       249 s~-~d~~i~vwd~~~----~~~----------~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (513)
                      ++ +|++..||...-    .+.          ..                  ..+......+.+|...|.+..|...+ +
T Consensus       207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~  285 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q  285 (481)
T ss_pred             EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence            98 799999997321    100          00                  00001113567899999999999888 8


Q ss_pred             EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC
Q 010287          296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP  374 (513)
Q Consensus       296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~  374 (513)
                      .+++++.|.+-.+||++++....                .+.+|....+.++-+|..+++++.+. .+.++||++..-..
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~----------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVN----------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             eeeeeeccccceeeeeccCceec----------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence            99999999999999999998732                25677788999999999999999874 99999999854556


Q ss_pred             eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287          375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  454 (513)
                      +..|++|...               |+++.|.-|. .+++|++|.+|++||+++....+.++. ...+++.++++..++.
T Consensus       350 V~VFQGHtdt---------------VTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  350 VAVFQGHTDT---------------VTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPI  412 (481)
T ss_pred             eeeecccccc---------------eeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCce
Confidence            7888999876               5688998765 478999999999999997654444443 4568889999999999


Q ss_pred             eeeecCCCeEEE--ecCCCCCccccCC-ccccccCCeeEEEEeCCC---CEEEEEcCCcEEEEe
Q 010287          455 RPLGSLSGVVRR--VKGADNSALDANG-NAFDFSMKLLHLAWHPSE---NSIACAASNSLYMYY  512 (513)
Q Consensus       455 l~~~~~d~~i~~--~~~~~~~~~~~~~-~~~~~~~~i~~~~~sp~~---~~la~~~~~~~~i~~  512 (513)
                      +|.--.++.|++  ..|.++.  .+.. ...+|...|++++|..+.   +++.+|-+..++=|+
T Consensus       413 IAiPhDNRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  413 IAIPHDNRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             EEeccCCceEEEEecCCCccc--cCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence            999999999999  4454444  2332 234689999999998764   334455466666554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=2.1e-24  Score=196.46  Aligned_cols=274  Identities=15%  Similarity=0.244  Sum_probs=218.6

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      +..+|.+.|..+++.+.. .++++++||++++|+-...+.+                     -...+.+|.         
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~---------   57 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK---------   57 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence            466899999999877554 8999999999999996655432                     123355555         


Q ss_pred             ccccccee-EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       110 ~~~~~i~~-i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                         +-|.. ++|.+ .++..+++++.|.+|.+|...+.....                                      
T Consensus        58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~--------------------------------------   95 (745)
T KOG0301|consen   58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY--------------------------------------   95 (745)
T ss_pred             ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh--------------------------------------
Confidence               55666 88866 455679999999999999987654222                                      


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                            ++.+|...|.|++...++. +++| -|.++++|....-.  .
T Consensus        96 --------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~  134 (745)
T KOG0301|consen   96 --------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--Y  134 (745)
T ss_pred             --------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhhh--c
Confidence                                                  1579999999999888887 7888 59999999875222  1


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                              .+++|+..|..+..-|++  .+++|+.|.+|++|.-  +..    +++            +.+|..-|+.++
T Consensus       135 --------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~----l~t------------f~gHtD~VRgL~  186 (745)
T KOG0301|consen  135 --------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTL----LKT------------FSGHTDCVRGLA  186 (745)
T ss_pred             --------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cch----hhh------------hccchhheeeeE
Confidence                    568999999999999985  8999999999999975  333    333            456668899999


Q ss_pred             EeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          348 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       348 ~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +-+++.++-++.||.|+.|++.  +..+.++.+|...               ++++...+++..++++++|+++++|+..
T Consensus       187 vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  187 VLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEeecC
Confidence            9998888888888999999995  8999999999877               4588878888899999999999999976


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                         ...+.+......++++.+-++|. +++|+.||.||+
T Consensus       250 ---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV  284 (745)
T KOG0301|consen  250 ---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV  284 (745)
T ss_pred             ---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence               33466777777888888877765 567778999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=7.5e-24  Score=183.93  Aligned_cols=287  Identities=15%  Similarity=0.152  Sum_probs=208.0

Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeee-eeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      |.-+|.+++++|  ++.+.++++.|++|.-|++.+++... +..-.  .                               
T Consensus       141 H~~s~~~vals~--d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--e-------------------------------  185 (479)
T KOG0299|consen  141 HQLSVTSVALSP--DDKRVFSASKDGTILKWDVLTGKKDRYIIERD--E-------------------------------  185 (479)
T ss_pred             ccCcceEEEeec--cccceeecCCCcceeeeehhcCcccccccccc--h-------------------------------
Confidence            338899999955  77899999999999999999886331 11100  0                               


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                       +    +. ..    ..+.+....+|...+.+++.++|+++|++| .|..|.||+.++.+... 
T Consensus       186 -----------------v----~k-~~----~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~-  238 (479)
T KOG0299|consen  186 -----------------V----LK-SH----GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK-  238 (479)
T ss_pred             -----------------h----hh-hc----cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-
Confidence                             0    00 00    000000013788999999999999999999 69999999999776543 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|.+.|.+++|-... ..+++++.|+.|++|++......    .+            +.+|...|.+|..
T Consensus       239 -------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~v----et------------lyGHqd~v~~Ida  294 (479)
T KOG0299|consen  239 -------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYV----ET------------LYGHQDGVLGIDA  294 (479)
T ss_pred             -------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHH----HH------------HhCCccceeeech
Confidence                   568999999999998765 88999999999999998765542    22            4567788999988


Q ss_pred             eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      ...++.+.+|. |+++++|++.  ...-..+.++....               -+++|- +...+++|+.+|.|.+|++.
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~si---------------dcv~~I-n~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSI---------------DCVAFI-NDEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             hcccceEEeccccceeEEEecc--ccceeeeeCCCCCe---------------eeEEEe-cccceeeccCCceEEEeeec
Confidence            87777777764 6999999996  34444455555332               277777 44578999999999999998


Q ss_pred             CCCccceeecCCC-----------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc---ccCCccccccCCeeEEEE
Q 010287          428 EGSAESTTLEASK-----------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       428 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~  493 (513)
                      ..+.+...-.+|.           .++++++..|...++|+|+.+|.|++   |.....   -.....+...+-|++++|
T Consensus       357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL---W~i~~g~r~i~~l~~ls~~GfVNsl~f  433 (479)
T KOG0299|consen  357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL---WKIEDGLRAINLLYSLSLVGFVNSLAF  433 (479)
T ss_pred             ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE---EEecCCccccceeeecccccEEEEEEE
Confidence            7644433222221           27889999999999999999999999   322210   011122235788999999


Q ss_pred             eCCCCEEEEEc
Q 010287          494 HPSENSIACAA  504 (513)
Q Consensus       494 sp~~~~la~~~  504 (513)
                      +++|++|++|.
T Consensus       434 ~~sgk~ivagi  444 (479)
T KOG0299|consen  434 SNSGKRIVAGI  444 (479)
T ss_pred             ccCCCEEEEec
Confidence            99999777553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=194.94  Aligned_cols=365  Identities=15%  Similarity=0.190  Sum_probs=243.2

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      ..+.|++..   .+..-++.++.+.||++.=+|-=+.+|.|..+|+|.|++++.++.+                      
T Consensus       183 ~lql~Nvrt---~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------------------  237 (910)
T KOG1539|consen  183 RLQLWNVRT---GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------------------  237 (910)
T ss_pred             cEEEEEecc---CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------------------
Confidence            455677765   2223345567899999999999999999999999999999877642                      


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                       .+|+--.            +.|+++.|  ..||..+ ++++..|.+.+||++..+......-...       |.     
T Consensus       238 -~sFk~d~------------g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~-------~s-----  290 (910)
T KOG1539|consen  238 -MSFKQDW------------GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY-------GS-----  290 (910)
T ss_pred             -EEEEccc------------cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc-------CC-----
Confidence             2222112            78999999  4466555 4556679999999998876654431110       00     


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec-cCCCEEEEE
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~  250 (513)
                        .....+.|..-            +.++.+.|+++++|-...++..  ++..+ +..||..+..|+.|. .++..+.++
T Consensus       291 --v~~~~fl~~ep------------Vl~ta~~DnSlk~~vfD~~dg~--pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa  353 (910)
T KOG1539|consen  291 --VTGATFLPGEP------------VLVTAGADNSLKVWVFDSGDGV--PRLLR-SRGGHSAPPSCIRFYGSQGHFILSA  353 (910)
T ss_pred             --cccceecCCCc------------eEeeccCCCceeEEEeeCCCCc--chhee-eccCCCCCchheeeeccCcEEEEec
Confidence              01122222222            3367778899999987765553  12222 247899999999987 567667666


Q ss_pred             -cCCeEEEEEcCCCcce-----------------------------------------------------eeecc-----
Q 010287          251 -DDLRINLWNLEISNQS-----------------------------------------------------FNIVD-----  271 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~-----------------------------------------------------~~~~~-----  271 (513)
                       .|++.+.+++....+.                                                     ...++     
T Consensus       354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~  433 (910)
T KOG1539|consen  354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT  433 (910)
T ss_pred             ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence             5777766654321000                                                     00000     


Q ss_pred             -----cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          272 -----VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       272 -----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                           ++|..++.....+++++.++.| ++.+.|+..|.|-+|++.+|-....    |..         -..|+++|+.+
T Consensus       434 ~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s----f~~---------~~ah~~~V~gl  499 (910)
T KOG1539|consen  434 SGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS----FGD---------SPAHKGEVTGL  499 (910)
T ss_pred             cccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc----ccc---------CccccCceeEE
Confidence                 0122223344678899999999 9999999999999999998764222    110         14577899999


Q ss_pred             EEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccc----------------------------cccccc-ccCC
Q 010287          347 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP----------------------------KLCDLY-ENDS  396 (513)
Q Consensus       347 ~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~-~~~~  396 (513)
                      +...-++.+++++ +|.+++||... ..++..+........                            -++.+. +.+ 
T Consensus       500 a~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-  577 (910)
T KOG1539|consen  500 AVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-  577 (910)
T ss_pred             EecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-
Confidence            9998888899866 49999999875 433333222111000                            000011 122 


Q ss_pred             ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC-CeEEE
Q 010287          397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRR  466 (513)
Q Consensus       397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~  466 (513)
                        .+++++|||||++|++++.|++|++||+.++..+- . -.-..+...+.++|.|.+||+.-.| ..|.+
T Consensus       578 --ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID-~-~~vd~~~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  578 --RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID-G-LLVDSPCTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             --ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee-e-EecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence              25699999999999999999999999999984332 1 2235677899999999999999888 56666

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=183.02  Aligned_cols=277  Identities=16%  Similarity=0.282  Sum_probs=206.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++|.|+|..  ..+++++.|+++++|.+.......+..+                                      
T Consensus       214 ~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~--------------------------------------  253 (514)
T KOG2055|consen  214 GGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSI--------------------------------------  253 (514)
T ss_pred             CCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence            789999998854  4999999999999999976543222111                                      


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                          .-...+|.+.+|.|+|. .++++ ....++.||+.+.+.. ++ 
T Consensus       254 ------------------------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~-  295 (514)
T KOG2055|consen  254 ------------------------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KL-  295 (514)
T ss_pred             ------------------------------------eeccCccceeeecCCCceEEEecccceEEEEeeccccccc-cc-
Confidence                                                12235688999999998 67766 6889999999865532 11 


Q ss_pred             ccCccccccc-cCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          271 DVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       271 ~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                        +  .+.++ ...+.....+|++ ++|+..+..|.|.+....+++.    +..++..             +.|..++|+
T Consensus       296 --~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~el----i~s~Kie-------------G~v~~~~fs  353 (514)
T KOG2055|consen  296 --K--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKEL----ITSFKIE-------------GVVSDFTFS  353 (514)
T ss_pred             --c--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhh----hheeeec-------------cEEeeEEEe
Confidence              1  22333 3457788999999 8999999999999999888876    4444443             679999999


Q ss_pred             ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      .|++.|++.+ +|.|.+||++. ..++..+.-....-              -+.+|.++++.|||+|+..|.|.|||..+
T Consensus       354 Sdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  354 SDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccch
Confidence            9998888754 59999999997 67777776444321              24789999999999999999999999654


Q ss_pred             C-----CccceeecCCCCceeEEEEcCCCCceeeecC--CCeEEE--------ecCCCCCccccCCccccccCCeeEEEE
Q 010287          429 G-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR--------VKGADNSALDANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       429 ~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~  493 (513)
                      .     .+.+..+..-...|..+.|+++.+.||.+|.  +..+|+        ...|...        -.--+.|++|+|
T Consensus       419 ~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~--------n~~vg~vtc~aF  490 (514)
T KOG2055|consen  419 CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS--------NTKVGHVTCMAF  490 (514)
T ss_pred             hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC--------CCcccceEEEEe
Confidence            2     2233445555678999999999999988864  567777        1122111        112357999999


Q ss_pred             eCCCCEEEEEc-CCcEEEEe
Q 010287          494 HPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       494 sp~~~~la~~~-~~~~~i~~  512 (513)
                      ||.+.+||.|. .+.+.+|.
T Consensus       491 SP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  491 SPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             cCCCceEEeecCCCceeeEe
Confidence            99999999998 55666663

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-23  Score=172.74  Aligned_cols=285  Identities=21%  Similarity=0.319  Sum_probs=188.9

Q ss_pred             EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (513)
Q Consensus        38 V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  117 (513)
                      -.|+.|++.|.+||+|..||+|.|||+.+..                       ....+.+|.            .+|.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS   70 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence            7899999999999999999999999987654                       336688998            99999


Q ss_pred             EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      ++|  +++|..|+++|.|..|.+||+..|.+.....+                                           
T Consensus        71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf-------------------------------------------  105 (405)
T KOG1273|consen   71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-------------------------------------------  105 (405)
T ss_pred             EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEc-------------------------------------------
Confidence            999  55999999999999999999998875543222                                           


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                        ..+|+...|+|..+ .+++. -+..-.+-++..+..  .++...+.
T Consensus       106 ----------------------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d  149 (405)
T KOG1273|consen  106 ----------------------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDD  149 (405)
T ss_pred             ----------------------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCc
Confidence                                              24577788888433 33333 344455555543221  11110000


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                        ........+..|.+.| +++++|...|.+.++|..+.+...    .+....           ...|..+.++..|+.|
T Consensus       150 --~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~va----s~rits-----------~~~IK~I~~s~~g~~l  211 (405)
T KOG1273|consen  150 --GDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVA----SFRITS-----------VQAIKQIIVSRKGRFL  211 (405)
T ss_pred             --cccccccccccccCCC-CEEEEecCcceEEEEecchheeee----eeeech-----------heeeeEEEEeccCcEE
Confidence              0011223344688888 999999999999999998876532    222111           1468899999999999


Q ss_pred             EEE-eCCeEEEEEccC---CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCC
Q 010287          356 LSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGS  430 (513)
Q Consensus       356 ~~~-~~~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~  430 (513)
                      +.. +|..|+.|+++.   .++-...-..|. ...-+....+       .+++|+.+|.|++.++ ....++||.-..| 
T Consensus       212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~W-------k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-  282 (405)
T KOG1273|consen  212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQW-------KKCCFSGDGEYVCAGSARAHALYIWEKSIG-  282 (405)
T ss_pred             EEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhh-------hheeecCCccEEEeccccceeEEEEecCCc-
Confidence            985 569999999862   010000000000 0000111111       1789999999998777 4568999998887 


Q ss_pred             ccceeecCCC-CceeEEEEcCCCCceeeecCCCeEEE
Q 010287          431 AESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+...+.+.. .....+.|.|-...+++- ..|.+++
T Consensus       283 sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i  318 (405)
T KOG1273|consen  283 SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI  318 (405)
T ss_pred             ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence            5556666665 444556666666666655 4556665

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-23  Score=194.97  Aligned_cols=275  Identities=15%  Similarity=0.197  Sum_probs=204.3

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ..|+..-+.|+|.|+|++|.+++.||.|++|+......                 .|+...     -+.           
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g-----------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISG-----------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccC-----------
Confidence            36889999999999999999999999999999654421                 011111     022           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       ..|.+++-    ++.+|++++.+++|.+|.+..++...+                                        
T Consensus        57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i----------------------------------------   91 (933)
T KOG1274|consen   57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI----------------------------------------   91 (933)
T ss_pred             -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence             66777776    445899999999999999987653211                                        


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                          +....-++++++|+-+|++++.| +|-.|++-+..+.....   
T Consensus        92 ------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---  132 (933)
T KOG1274|consen   92 ------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---  132 (933)
T ss_pred             ------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe---
Confidence                                                11222458899999999999999 79999999998766553   


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           .+.+|.++|.++.|+|.+ ++||+.+.||.|++||+.++.+..    ++.+-....    -......+..++|+|
T Consensus       133 -----~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~----tl~~v~k~n----~~~~s~i~~~~aW~P  198 (933)
T KOG1274|consen  133 -----VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSK----TLTGVDKDN----EFILSRICTRLAWHP  198 (933)
T ss_pred             -----eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhh----hcccCCccc----cccccceeeeeeecC
Confidence                 568999999999999999 999999999999999999877632    222211000    000135678899999


Q ss_pred             c-CCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 N-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~-~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      + |++++.+.++.|++|+... ......+........             +..+.|+|+|+|||+++.||.|.|||.++-
T Consensus       199 k~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  199 KGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             CCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence            8 5666668889999999885 666666654332211             348999999999999999999999999862


Q ss_pred             CccceeecCCCCceeEEEEcCCCCcee
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                        ..   ......|.+++|.|+...+-
T Consensus       265 --~~---~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  265 --ER---HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             --hh---ccccceeEEEecCCCCCeeE
Confidence              11   23345788889988876553

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.3e-23  Score=191.47  Aligned_cols=280  Identities=12%  Similarity=0.158  Sum_probs=218.4

Q ss_pred             CcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCc
Q 010287           88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI  167 (513)
Q Consensus        88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      +.|.+..++.+|.            ..|..++..   ++..++++|.||++++|+-..++......              
T Consensus         2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~--------------   52 (745)
T KOG0301|consen    2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA--------------   52 (745)
T ss_pred             CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence            4577888899999            789888874   34579999999999999987665433211              


Q ss_pred             ccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEE-EEecc-CCC
Q 010287          168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DGE  245 (513)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~  245 (513)
                                                                                  ..+|.+.|.+ +++-+ ++.
T Consensus        53 ------------------------------------------------------------~~~~~g~i~~~i~y~e~~~~   72 (745)
T KOG0301|consen   53 ------------------------------------------------------------FEGPKGFIANSICYAESDKG   72 (745)
T ss_pred             ------------------------------------------------------------cccCcceeeccceeccccCc
Confidence                                                                        1234444544 66665 444


Q ss_pred             EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287          246 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  324 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  324 (513)
                      .+++| .|++|.+|.+.......        .+.+|...|.++....++ . +++||.|.++++|....  +    ... 
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l----~~~-  135 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--L----VYS-  135 (745)
T ss_pred             ceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchh--h----hcc-
Confidence            56666 79999999998666553        678999999999988887 4 99999999999997543  2    122 


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                                 +.+|...|+++..-|.+ .+++|+ |.+|++|.   .++.++++.+|...+               ..+
T Consensus       136 -----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk---~~~~l~tf~gHtD~V---------------RgL  185 (745)
T KOG0301|consen  136 -----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK---GGTLLKTFSGHTDCV---------------RGL  185 (745)
T ss_pred             -----------cCCcchheeeeeecCCC-cEEeccCcceeeecc---CCchhhhhccchhhe---------------eee
Confidence                       46677899999999988 555554 69999998   377889999998764               378


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc
Q 010287          404 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD  483 (513)
Q Consensus       404 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  483 (513)
                      ++-+++. +++++.||.|++|++. + ..+..+.+|.+-++++...+++..++++++|+++++   |+..   ...+.+.
T Consensus       186 ~vl~~~~-flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri---W~~~---e~~q~I~  256 (745)
T KOG0301|consen  186 AVLDDSH-FLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI---WKKD---ECVQVIT  256 (745)
T ss_pred             EEecCCC-eEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE---eecC---ceEEEEe
Confidence            8887764 6789999999999995 4 456889999999999999999999999999999999   3222   2223444


Q ss_pred             cc-CCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          484 FS-MKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       484 ~~-~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      |. ..|.++.+-++|..++.+||+.++||.
T Consensus       257 lPttsiWsa~~L~NgDIvvg~SDG~VrVfT  286 (745)
T KOG0301|consen  257 LPTTSIWSAKVLLNGDIVVGGSDGRVRVFT  286 (745)
T ss_pred             cCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence            44 489999999999999999999999996

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.7e-25  Score=201.72  Aligned_cols=246  Identities=18%  Similarity=0.306  Sum_probs=187.5

Q ss_pred             cEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        37 ~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      .+..|.|+. +.++|||++.+|.|.+||+.....     .               +....|..|+            ..+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----n---------------k~l~~f~EH~------------Rs~  136 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----N---------------KLLTVFNEHE------------RSA  136 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc-----c---------------hhhhHhhhhc------------cce
Confidence            344566764 367999999999999999864211     0               1224577788            889


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      +++.|++... .+|++|+.||+|++||++..+-+..+                                           
T Consensus       137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~-------------------------------------------  172 (839)
T KOG0269|consen  137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTF-------------------------------------------  172 (839)
T ss_pred             eeeeeccCCc-cEEEecCCCceEEEEeeecccccccc-------------------------------------------
Confidence            9999997654 69999999999999999876533321                                           


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       .+....|+.+.|+| .+.+|+++ +.|.+++||++...+...     
T Consensus       173 ---------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-----  214 (839)
T KOG0269|consen  173 ---------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-----  214 (839)
T ss_pred             ---------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-----
Confidence                                             12335588999999 57788888 799999999997776543     


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                        .+..|.++|.|+.|+|++ .+||+|+.|+.|+|||+.+++...  ..++..             ..++.++.|-|..+
T Consensus       215 --k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-------------iapv~rVkWRP~~~  276 (839)
T KOG0269|consen  215 --KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT-------------IAPVGRVKWRPARS  276 (839)
T ss_pred             --HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee-------------cceeeeeeeccCcc
Confidence              678899999999999987 999999999999999997655421  222222             26899999999766


Q ss_pred             E-EEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 010287          354 H-ILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       354 ~-l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      + |++++   |-.|+|||++.+.-+..++..|...               ++.++|.. |...+.+++.||.|..-.+++
T Consensus       277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~---------------vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS---------------VTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             chhhhhhccccceEEEEeeccccccceeeeccCcc---------------ccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            5 44443   4899999999877888888888876               34788875 556788999999887655554


Q ss_pred             C
Q 010287          429 G  429 (513)
Q Consensus       429 ~  429 (513)
                      .
T Consensus       342 a  342 (839)
T KOG0269|consen  342 A  342 (839)
T ss_pred             c
Confidence            4

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=181.89  Aligned_cols=300  Identities=17%  Similarity=0.255  Sum_probs=210.3

Q ss_pred             cccccccEEEEEEcCCC--CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ..-|.+.|++++|+|..  +++|+|+..|+|-+||+.+.+.                   ...-...+..|.        
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs--------  234 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS--------  234 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC--------
Confidence            34578999999999984  6899999999999999863332                   111223466777        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          .+|.+|.|+|... .+++++|.||+|++-|++.+....+....                                 
T Consensus       235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~---------------------------------  276 (498)
T KOG4328|consen  235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLD---------------------------------  276 (498)
T ss_pred             ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcC---------------------------------
Confidence                8899999998544 68999999999999999886533322111                                 


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                               .....+..+.|+.+...++.+ .=|...+||+++.+...
T Consensus       277 -----------------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  277 -----------------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             -----------------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence                                                     011225567788777777776 56699999999888755


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      .       .+.-|...|++++++|..+.+|++++.|++.+|||+|.-.....            +......|...|.+..
T Consensus       316 ~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sAy  376 (498)
T KOG4328|consen  316 E-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSAY  376 (498)
T ss_pred             h-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeeeE
Confidence            4       44567889999999999989999999999999999987443211            0111345778999999


Q ss_pred             EeecCCEEEE-EeCCeEEEEEcc---CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          348 FARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       348 ~sp~~~~l~~-~~~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      |||.+-.|++ +.|..|+|||..   ....+..++. |.....         .....+...|.|+..++++|..-..|-|
T Consensus       377 FSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv  446 (498)
T KOG4328|consen  377 FSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDV  446 (498)
T ss_pred             EcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeE
Confidence            9996655666 557999999984   1133333333 222111         1112347899999999999999999999


Q ss_pred             EecCCCCccceeecC-CCCceeE-EEEcCCCCceeee-cCCCeEEE
Q 010287          424 FGCSEGSAESTTLEA-SKNPMRR-QVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      +|.+.+ +....+.. ....|.+ ..++|-+..+++| +..|.|.+
T Consensus       447 ~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  447 FDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV  491 (498)
T ss_pred             EcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence            998866 32233222 2223433 4788988855555 55677766

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=4.1e-24  Score=187.40  Aligned_cols=285  Identities=12%  Similarity=0.196  Sum_probs=214.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ..+.|..-|.++.+|...+++.||+.. -|+|||+......    .            |.    ..+.          .+
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k----~------------Pv----sqLd----------cl  462 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNK----S------------PV----SQLD----------CL  462 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCC----C------------cc----cccc----------cc
Confidence            466799999999999999999999864 6999998754321    0            10    1111          11


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      .-..-|.+...+|  |++.|++|+.-.++.|||+..-......++                                   
T Consensus       463 ~rdnyiRSckL~p--dgrtLivGGeastlsiWDLAapTprikael-----------------------------------  505 (705)
T KOG0639|consen  463 NRDNYIRSCKLLP--DGRTLIVGGEASTLSIWDLAAPTPRIKAEL-----------------------------------  505 (705)
T ss_pred             CcccceeeeEecC--CCceEEeccccceeeeeeccCCCcchhhhc-----------------------------------
Confidence            1125577777854  888999999999999999976532111110                                   


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                             ....-...+++.+||.+..+++ .||.|.|||+...... .
T Consensus       506 ---------------------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V-r  545 (705)
T KOG0639|consen  506 ---------------------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV-R  545 (705)
T ss_pred             ---------------------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-e
Confidence                                                   1111235678899999998888 8999999999854433 2


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+++|.+.+.||..+++| ..|-+|+-|.+||.||++.+....++                 ...+.|.++.+
T Consensus       546 -------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh-----------------dF~SQIfSLg~  600 (705)
T KOG0639|consen  546 -------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH-----------------DFSSQIFSLGY  600 (705)
T ss_pred             -------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh-----------------hhhhhheeccc
Confidence                   679999999999999999 99999999999999999998764321                 12267999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++.+++.|-. +.+.|-...  +.....+..|+..               |.++.|.+-|+++++.+.|+.+..|...
T Consensus       601 cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             CCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchhhhhhccCc
Confidence            999999999987 888887765  3333344444443               5699999999999999999999999988


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      -+..+.+.  ....+|.++.++.+.+++++|+-|..-.+
T Consensus       664 yGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATV  700 (705)
T KOG0639|consen  664 YGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATV  700 (705)
T ss_pred             cccceeec--cccCcceeeeeccCceEEEecCCCcceEE
Confidence            77444322  23567999999999999999998866554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.7e-22  Score=179.24  Aligned_cols=415  Identities=13%  Similarity=0.134  Sum_probs=269.1

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (513)
                      ....+|++.....  .. ..-.-.+.|.+++.+|.+..++.|+.||.+..++...+..                     .
T Consensus        90 g~i~EwDl~~lk~--~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------------~  145 (691)
T KOG2048|consen   90 GSITEWDLHTLKQ--KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------------T  145 (691)
T ss_pred             ceEEEEecccCce--eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------------------E
Confidence            3456677765311  11 2223468999999999999999999999777777655443                     2


Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +...|.-.+            ++|.++.|.|  ++..+++|+.||.|++||+..+....+...+.....-   +   ...
T Consensus       146 ~~r~l~rq~------------sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k---~---~~~  205 (691)
T KOG2048|consen  146 YKRSLMRQK------------SRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK---R---EPT  205 (691)
T ss_pred             EEeeccccc------------ceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeeccccccc---C---Cce
Confidence            444444444            8899999955  7778999999999999999998766644433321000   0   000


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                      ..+ ++.+..++.             .+++++.|.+++||-..+...+.       ...|...|.+++..+++.+++++ 
T Consensus       206 iVW-Sv~~Lrd~t-------------I~sgDS~G~V~FWd~~~gTLiqS-------~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  206 IVW-SVLFLRDST-------------IASGDSAGTVTFWDSIFGTLIQS-------HSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             EEE-EEEEeecCc-------------EEEecCCceEEEEcccCcchhhh-------hhhhhcceeEEEEcCCCCeEEEcc
Confidence            111 223333443             38889999999999877554332       25788899999999998888887 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc-------------
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-------------  317 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------  317 (513)
                      -|+.|..+...+....+...    .....|...|.+++..++   .+++|+.|..+.+--.+.-...             
T Consensus       265 vd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~  337 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDR  337 (691)
T ss_pred             CCCceEEEEecCCccceeee----ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccce
Confidence            69999999888765532211    134668888999998875   6888999988877544431100             


Q ss_pred             ------cccceeecccc---------------CCC-CccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe
Q 010287          318 ------DTHSKLFEEQE---------------APG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV  375 (513)
Q Consensus       318 ------~~~~~~~~~~~---------------~~~-~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~  375 (513)
                            .+....+..+.               ... .......-...|.+.+.||+|++|+.+.-..++||.+.... .+
T Consensus       338 v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~v  416 (691)
T KOG2048|consen  338 VSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NV  416 (691)
T ss_pred             eecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ce
Confidence                  00000110000               000 00111122356899999999999999888889999998533 44


Q ss_pred             eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccc-eee--cCCCCceeEEEEcCC
Q 010287          376 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTPS  451 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~  451 (513)
                      ...........          ..+...+.|+-|++.++..+ .+..+.++++++..... ..+  ++-..++..+..+++
T Consensus       417 k~~~v~~~~~~----------~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd  486 (691)
T KOG2048|consen  417 KVINVDDVPLA----------LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD  486 (691)
T ss_pred             eEEEeccchhh----------hccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC
Confidence            33333222111          11244788998988887777 77888888887653221 111  134567899999999


Q ss_pred             CCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC-CCEEEEE-cCCcEEEEe
Q 010287          452 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACA-ASNSLYMYY  512 (513)
Q Consensus       452 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~-~~~~~~i~~  512 (513)
                      |+|+|..+.+|.|.++......   ...........|++++++|. .+.|+++ +++.++-|+
T Consensus       487 G~yiaa~~t~g~I~v~nl~~~~---~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd  546 (691)
T KOG2048|consen  487 GNYIAAISTRGQIFVYNLETLE---SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD  546 (691)
T ss_pred             CCEEEEEeccceEEEEEcccce---eecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence            9999999999999993222221   11111123578999999955 5666655 477777664

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=6.3e-24  Score=186.28  Aligned_cols=234  Identities=14%  Similarity=0.168  Sum_probs=180.6

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..|+++...|||+.|++| .-.++.|||+......++.      .+..-.-....++.+||. ++.++++.||.|.|||+
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprika------eltssapaCyALa~spDa-kvcFsccsdGnI~vwDL  538 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDL  538 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhh------hcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEc
Confidence            348889999999999998 6889999999876654331      233333445678899998 99999999999999999


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      .+..+    ++.            +.+|...+.||.+++||..|.+|+ |.+|+.||++. ++.+........       
T Consensus       539 hnq~~----Vrq------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre-grqlqqhdF~SQ-------  594 (705)
T KOG0639|consen  539 HNQTL----VRQ------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE-GRQLQQHDFSSQ-------  594 (705)
T ss_pred             cccee----eec------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh-hhhhhhhhhhhh-------
Confidence            98766    444            455667899999999999999987 69999999996 444433222111       


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                               |+++...|++.+|+.|-.++.+.|-...  +.....+..|...|.++.|.+-|+++++.+.|..+..   |
T Consensus       595 ---------IfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna---w  660 (705)
T KOG0639|consen  595 ---------IFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA---W  660 (705)
T ss_pred             ---------heecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCceeeecCchhhhhh---c
Confidence                     5689999999999999999998887765  4455778889999999999999999999999988776   3


Q ss_pred             CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCC-cEEEEe
Q 010287          471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN-SLYMYY  512 (513)
Q Consensus       471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~  512 (513)
                      +..-.....+. .-++.|+++..|-|.++|++|+.+ ..-+|.
T Consensus       661 rtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  661 RTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             cCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEE
Confidence            32211111111 126789999999999999999955 666653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.4e-24  Score=198.51  Aligned_cols=236  Identities=17%  Similarity=0.230  Sum_probs=182.4

Q ss_pred             eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +..+.|+. +.++|+++ ..|.|.+||+........+     ..+..|...++++.|++..+++|++|+.||.|++||+|
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            45677875 57789998 6999999999863221111     15688999999999999999999999999999999999


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ..+..    .++.            +....|+.|.|+| .+.+++++.| |.+++||++.+.++...+..|.+.      
T Consensus       165 ~~~S~----~t~~------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp------  222 (839)
T KOG0269|consen  165 SKKSK----STFR------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP------  222 (839)
T ss_pred             ccccc----cccc------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc------
Confidence            86642    2222            2336899999999 6678888888 999999999888888999999987      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc-eeeecC--CCeEEEe
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSL--SGVVRRV  467 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--d~~i~~~  467 (513)
                               |.++.|+|++.+||||+.|+.|+|||..+........-....|+.++.|.|...+ ||++++  |-.|++ 
T Consensus       223 ---------V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V-  292 (839)
T KOG0269|consen  223 ---------VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV-  292 (839)
T ss_pred             ---------eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEE-
Confidence                     5699999999999999999999999998664433333345679999999999875 666654  677888 


Q ss_pred             cCCCCCccccCC-ccccccCCeeEEEEeCC-CCEEEEEcCCcEE
Q 010287          468 KGADNSALDANG-NAFDFSMKLLHLAWHPS-ENSIACAASNSLY  509 (513)
Q Consensus       468 ~~~~~~~~~~~~-~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~  509 (513)
                        |++.+..+.. ...+|...++.++|-.. -..|.+++.++++
T Consensus       293 --WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  293 --WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             --EeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence              5555433333 24478999999999873 3445577766543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.1e-22  Score=166.13  Aligned_cols=285  Identities=13%  Similarity=0.227  Sum_probs=188.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      -+.+|.+-|+|+.|++.|+.+|+++.|++|+|||.+....                   .+......+.|.         
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~---------   59 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD---------   59 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC---------
Confidence            4568999999999999999999999999999999754432                   455667788898         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|..|.|.+..-|+.+++++.|+++.||.-........                               |      
T Consensus        60 ---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~-------------------------------~------   99 (361)
T KOG2445|consen   60 ---GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH-------------------------------G------   99 (361)
T ss_pred             ---CcEEEEEecCccccceEEEEecCCceeeeeecccccccc-------------------------------c------
Confidence               899999998877799999999999999998642221110                               0      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                        +            .-.+++.+......|+.+.|.|.  |-.++++ .||.++||+.-....+
T Consensus       100 ------------------~------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen  100 ------------------R------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             ------------------c------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence                              0            00122224455677999999994  6677877 7999999987543221


Q ss_pred             ee--ec-ccC--ccccccccCCeEEEEEeCCC--CeEEEEEeCC-----CcEEEEEcCCcccccccceeeccccCCCCcc
Q 010287          267 FN--IV-DVK--PANMEDLTEVITSAEFHPTH--CNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS  334 (513)
Q Consensus       267 ~~--~~-~~~--~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  334 (513)
                      .+  +. +++  +.....+..+..|+.|+|..  +.+|+.|+.+     +.++||....+......+..           
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~-----------  218 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE-----------  218 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh-----------
Confidence            11  00 000  11223456678899998742  2467777766     47888876543311111111           


Q ss_pred             ccccccccEEEEEEeec----CCEEEEEeC-CeEEEEEccCCCCCeeeee---ccc---ccccccccccccCCccceeeE
Q 010287          335 FFTEIIASISDIKFARN----GRHILSRDY-MTLKLWDINMDSGPVATFQ---VHE---HLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       335 ~~~~~~~~v~~i~~sp~----~~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~v~~~  403 (513)
                       +.+|..+|++++|.|+    .+.|++++. | |+||.++.....+..-.   ...   -.+..+..+...+  -.|+.+
T Consensus       219 -L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~--~~VWrv  294 (361)
T KOG2445|consen  219 -LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN--GEVWRV  294 (361)
T ss_pred             -cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC--CceEEE
Confidence             3467789999999994    356777764 7 99999973111110000   000   0001111111111  026799


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecC
Q 010287          404 CLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       404 ~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      .|+-.|..|++.+.||.|++|...
T Consensus       295 ~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  295 RWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeeeeEEeecCCCceeeehhhh
Confidence            999999999999999999999754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=4.3e-23  Score=174.75  Aligned_cols=219  Identities=17%  Similarity=0.225  Sum_probs=160.2

Q ss_pred             eccccCCeEEEEeccC-CCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNSD-GETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      ..+|...=.+++|||- ...|++|+ -+.|++|...++.-..     .+..+.+|+..|..++|+|....+|++|+.||+
T Consensus       207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             ecccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCce
Confidence            3688888899999993 33477774 7889999988754322     234677899999999999998899999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC--CCCCeeeeeccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHE  382 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~--~~~~~~~~~~~~  382 (513)
                      |+|||+|.+.....  .            +.+.|.+.|+-|+|+.+-.+|++|+| |+++|||++.  .++++..++.|.
T Consensus       282 IrIWDiRs~~~~~~--~------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAA--V------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK  347 (440)
T ss_pred             EEEEEecCCCccce--e------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence            99999998743111  1            12456688999999998889999987 9999999985  357888999898


Q ss_pred             ccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccce----eecCCCCceeEEEEcCCCCceee
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAEST----TLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      .+               |+++.|+|.. ..|++++.|.+|.+||+........    ..++-..-...+.|-..      
T Consensus       348 ~p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq------  406 (440)
T KOG0302|consen  348 AP---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ------  406 (440)
T ss_pred             CC---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec------
Confidence            77               6699999954 5778888999999999975422100    00000000011111111      


Q ss_pred             ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEcCCcEEEEe
Q 010287          458 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY  512 (513)
Q Consensus       458 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~~~~~i~~  512 (513)
                                                -...|..+.||+.-. +|++.+.+++.||.
T Consensus       407 --------------------------GQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  407 --------------------------GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             --------------------------chhHhhhheeccCCCCeEEEecccceeEEE
Confidence                                      045678899999954 56677799999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=4.5e-22  Score=179.74  Aligned_cols=307  Identities=17%  Similarity=0.220  Sum_probs=207.3

Q ss_pred             cccccEEE--EEEcCC---CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           33 QEVDIISA--IEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        33 ~h~~~V~~--v~~sp~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      .|.-++.-  ..|++.   ..+||.+..+|.|.++|.......                 ++-.-...+..|.       
T Consensus        45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------------~ee~~lk~~~aH~-------  100 (720)
T KOG0321|consen   45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------------LEERQLKKPLAHK-------  100 (720)
T ss_pred             cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc-----------------hhhhhhccccccc-------
Confidence            34445554  567664   468999999999999997644321                 0111123456777       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           .+|..+.|.|  ....|++++.|.++++||+++..+....                                   
T Consensus       101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~-----------------------------------  138 (720)
T KOG0321|consen  101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGR-----------------------------------  138 (720)
T ss_pred             -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeecce-----------------------------------
Confidence                 8899999977  4568899999999999999988754321                                   


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                             ...+|...|.++||.+.. ..|++| .||.|.|||++....
T Consensus       139 ---------------------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~  179 (720)
T KOG0321|consen  139 ---------------------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV  179 (720)
T ss_pred             ---------------------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence                                                   135899999999999954 556677 699999999985431


Q ss_pred             e-eeec-------------ccCc-----cccccccCCeEE---EEEeCCCCeEEEEEeC-CCcEEEEEcCCcccccccce
Q 010287          266 S-FNIV-------------DVKP-----ANMEDLTEVITS---AEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       266 ~-~~~~-------------~~~~-----~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~  322 (513)
                      . .+..             ..+|     ..-..+...|.+   +.+..|+ ..|++++. |+.|+|||++......+   
T Consensus       180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r---  255 (720)
T KOG0321|consen  180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR---  255 (720)
T ss_pred             hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc---
Confidence            0 0000             0111     111223344444   4455566 78888888 99999999998653211   


Q ss_pred             eeccccCCCCccccccc---cccEEEEEEeecCCEEEE-EeCCeEEEEEccCCC-CCeeeeecccccccccccccccCCc
Q 010287          323 LFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILS-RDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSI  397 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~---~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
                       .+.    .....+..|   .-.+.++.....|.+|++ +.|+.|++|++.... .++..+.++....           +
T Consensus       256 -~ep----~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f  319 (720)
T KOG0321|consen  256 -QEP----RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------F  319 (720)
T ss_pred             -cCC----CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------e
Confidence             000    000001111   235677777777777766 678999999998522 2334444333211           1


Q ss_pred             cceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287          398 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR  466 (513)
Q Consensus       398 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~  466 (513)
                      +  ..-..+||+.+|++|+.|...++|.+.+.......+.+|.-.|..++|.|... -+++++.|-.+++
T Consensus       320 ~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki  387 (720)
T KOG0321|consen  320 Y--VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI  387 (720)
T ss_pred             e--eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence            1  14567999999999999999999999988667788999999999999977543 4667799999988

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=6e-22  Score=177.64  Aligned_cols=322  Identities=13%  Similarity=0.174  Sum_probs=213.4

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +...+.||+            +.|.+|...|  .|..|++|+.||+|+||.+.++.|+....+..               
T Consensus       392 ~~lvyrGHt------------g~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------------  442 (733)
T KOG0650|consen  392 CALVYRGHT------------GLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------------  442 (733)
T ss_pred             eeeeEeccC------------CeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeecc---------------
Confidence            344578888            8999999955  77899999999999999999999887655432               


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                       ...+++|.|.+..-.+          +...... +.+.+-.               .+     ..+..-+....|+++ 
T Consensus       443 -~I~~vaw~P~~~~~vL----------AvA~~~~-~~ivnp~---------------~G-----~~~e~~~t~ell~~~~  490 (733)
T KOG0650|consen  443 -EIRSVAWNPLSDLCVL----------AVAVGEC-VLIVNPI---------------FG-----DRLEVGPTKELLASAP  490 (733)
T ss_pred             -eeEEEEecCCCCceeE----------EEEecCc-eEEeCcc---------------cc-----chhhhcchhhhhhcCC
Confidence             1224445444432100          0000000 0000000               00     000011122233332 


Q ss_pred             ----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCccccccccee
Q 010287          251 ----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKL  323 (513)
Q Consensus       251 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~  323 (513)
                          .++.+..|.-...++...-+    ...-.|...|..+.|+..| .+|++..-+   ..|.|+++......    ..
T Consensus       491 ~~~~p~~~~~~W~~~~~~e~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P  561 (733)
T KOG0650|consen  491 NESEPDAAVVTWSRASLDELEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP  561 (733)
T ss_pred             CccCCcccceeechhhhhhhccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc
Confidence                14555666543221111000    0123477889999999999 888887664   47888888665431    11


Q ss_pred             eccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                                  |....+.|.++.|+|...+|++++...|+|||+.. +..++.+......               |..+
T Consensus       562 ------------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~m  613 (733)
T KOG0650|consen  562 ------------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSM  613 (733)
T ss_pred             ------------hhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeee
Confidence                        23334789999999999999999999999999985 6666555444333               3489


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCC---ccccCC-
Q 010287          404 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS---ALDANG-  479 (513)
Q Consensus       404 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~-  479 (513)
                      +.+|.|..|+.|+.|+.+..||+.-..+..+++..|...++.+++++.-.++++|+.||.+.+..+.-..   ...+.+ 
T Consensus       614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            9999999999999999999999998877789999999999999999999999999999999982222111   001111 


Q ss_pred             --ccccccCC----eeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          480 --NAFDFSMK----LLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       480 --~~~~~~~~----i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                        ...+|...    |.++.|||...+|.+++ ++.+.+|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence              12245544    99999999999999777 5578877

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.7e-22  Score=173.87  Aligned_cols=235  Identities=17%  Similarity=0.240  Sum_probs=176.3

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      --.++|+|++-+|+|.+|+.|+..|.|++|.+.++...                       ..+.+|-            
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----------------------~v~~aHY------------  123 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----------------------NVLSAHY------------  123 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----------------------HHHHhhc------------
Confidence            34688999999999999999999999999999998853                       5568888            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|+++.|  +.|+.+|++|+.||.|.+|.+..--                                             
T Consensus       124 Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv---------------------------------------------  156 (476)
T KOG0646|consen  124 QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV---------------------------------------------  156 (476)
T ss_pred             cceeEEEE--eCCCcEEEecCCCccEEEEEEEeec---------------------------------------------
Confidence            88999999  6799999999999999999985421                                             


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                             ....+..              ..+... +..|.-+|+++...+.  ..+++++ .|.++++||+..+..+..+
T Consensus       157 -------~a~~~~~--------------~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  157 -------SADNDHS--------------VKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             -------ccccCCC--------------ccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence                   0001100              011111 4788899999887664  4567776 7999999999988766543


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc--cEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDIK  347 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~  347 (513)
                      .         ....+.+++.+|.+ ..++.|+.+|.|.+.++.........+..-..+........+.+|.+  .|+|++
T Consensus       215 ~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa  284 (476)
T KOG0646|consen  215 T---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA  284 (476)
T ss_pred             e---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence            2         35679999999998 99999999999999887653321110111111122223344677877  999999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      ++-||.+|++|+. |.|.|||+.+ .++++++....
T Consensus       285 is~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~k  319 (476)
T KOG0646|consen  285 ISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSK  319 (476)
T ss_pred             EecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhc
Confidence            9999999999986 9999999996 77777775433

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.7e-24  Score=194.57  Aligned_cols=194  Identities=18%  Similarity=0.263  Sum_probs=164.7

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      +.+|..+|.++.|+++..+|++| .+|+|++||++..+..        +++.+|...+.++.|+|-+ .++++++.|..+
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v--------rtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~  136 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV--------RTLTGHLLNITSVDFHPYG-EFFASGSTDTDL  136 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh--------hhhhccccCcceeeeccce-EEeccccccccc
Confidence            36899999999999999999998 7999999999966543        2678999999999999999 899999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      ++||.+...+    .+.            +.+|...+..+.|+|+|++++.|++ ..++|||... ++.+..|..|+..+
T Consensus       137 ~iwD~Rk~Gc----~~~------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v  199 (825)
T KOG0267|consen  137 KIWDIRKKGC----SHT------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKV  199 (825)
T ss_pred             eehhhhccCc----eee------------ecCCcceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccc
Confidence            9999985544    233            3445678999999999999999876 9999999986 99999999888763


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                                     ..+.|+|..-.+++|+.|+++++||+++. ..+...+.....|.+..|+|++..+++|.....
T Consensus       200 ---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  200 ---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             ---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence                           37889999989999999999999999976 333445555778999999999999998865543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=4.1e-22  Score=168.89  Aligned_cols=269  Identities=17%  Similarity=0.271  Sum_probs=184.3

Q ss_pred             ccccccccEEEEEEcCCC--CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           30 EEVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      ..+.|.+.|+-+.-++-|  .+.|+=+..|.|.||++.....      .+......+.. .+.+....+.+|.       
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~------~l~~~~~~~~~-s~~~Pl~t~~ghk-------  211 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN------ALSEPGLEVKD-SEFRPLFTFNGHK-------  211 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh------hhcCccccccc-cccCceEEecccC-------
Confidence            345788888888887765  4667777899999999754321      11111111111 2334445567777       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..=++|+|+|...| .|++|..-+.|++|...++....-.                                   
T Consensus       212 -----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~-----------------------------------  250 (440)
T KOG0302|consen  212 -----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ-----------------------------------  250 (440)
T ss_pred             -----ccceeeeccccccc-ccccCccccceEeeeeccCceeecC-----------------------------------
Confidence                 66899999986554 6889988889999999887532210                                   


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                            .-+.+|...|-.++|+|. ...|++| -||+|+|||++.+.+
T Consensus       251 --------------------------------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  251 --------------------------------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             --------------------------------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence                                                  013579999999999996 4566777 599999999997754


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ...+      ..+.|.+.|+-+.|+... .+|++|+.||+++|||+|+-+.. +++..            ++-|+.+|++
T Consensus       293 ~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~------------fk~Hk~pIts  352 (440)
T KOG0302|consen  293 KAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVAT------------FKYHKAPITS  352 (440)
T ss_pred             ccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-Cccee------------EEeccCCeeE
Confidence            3332      347799999999999998 59999999999999999875432 22223            5567789999


Q ss_pred             EEEeecC-CEEE-EEeCCeEEEEEccCCCC---------------CeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          346 IKFARNG-RHIL-SRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       346 i~~sp~~-~~l~-~~~~~~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                      |.|+|.. ..|+ +|.|..|.+||+.....               +.+.+..|.+..             .+-.+.|+++
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~Q  419 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQ  419 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccC
Confidence            9999943 3444 45679999999875221               122333343321             1226788876


Q ss_pred             C-CEEEEEeCCCcEEEEe
Q 010287          409 G-GRVATGSYSNLFRVFG  425 (513)
Q Consensus       409 ~-~~l~~~~~dg~i~vwd  425 (513)
                      - .+|++.+.|| +.||.
T Consensus       420 iPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  420 IPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CCCeEEEecccc-eeEEE
Confidence            4 4677777787 45554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8.7e-24  Score=193.38  Aligned_cols=235  Identities=21%  Similarity=0.332  Sum_probs=199.1

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      ..|...+.++..-..++.+++| .|..+-+|.+.......        .+.+|..+|.++.|++.. .+|++|+.+|+|+
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK   95 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence            5677778888886778888888 68888899987554432        568999999999999998 8999999999999


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      +||+...+.    +++            +.+|...+.++.|+|-+.+.++|+ |..+++||++. ..+...+.+|...+ 
T Consensus        96 ~wDleeAk~----vrt------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv-  157 (825)
T KOG0267|consen   96 VWDLEEAKI----VRT------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVV-  157 (825)
T ss_pred             eeehhhhhh----hhh------------hhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCccee-
Confidence            999987665    333            566778899999999999998877 59999999996 77888888877653 


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                    ..+.|+|+|++++.|++|..+++||+..+ +....++.|...+..+-++|..-++++|+.|+.+++
T Consensus       158 --------------~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  158 --------------DVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             --------------EEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence                          37899999999999999999999999877 666899999999999999999999999999999999


Q ss_pred             ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287          467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL  508 (513)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~  508 (513)
                         |.+..+++....-.....|.+++|+|++..+++|-..++
T Consensus       223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence               666655565555556788999999999999988865443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.8e-20  Score=171.59  Aligned_cols=293  Identities=11%  Similarity=0.119  Sum_probs=187.7

Q ss_pred             CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (513)
Q Consensus        47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~  126 (513)
                      +.++++++.|+.|++||..+++.                       ...+..+             ..+..++|+|  ++
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~-------------~~~~~l~~~~--dg   42 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVG-------------QRPRGITLSK--DG   42 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECC-------------CCCCceEECC--CC
Confidence            35788999999999999876543                       1233333             3367899955  66


Q ss_pred             ceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287          127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (513)
Q Consensus       127 ~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  205 (513)
                      ..+ ++++.++.|++||..+++.........                ....+.++|+|+.+           .+....++
T Consensus        43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~l-----------~~~~~~~~   95 (300)
T TIGR03866        43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP----------------DPELFALHPNGKIL-----------YIANEDDN   95 (300)
T ss_pred             CEEEEEECCCCeEEEEECCCCcEEEeccCCC----------------CccEEEECCCCCEE-----------EEEcCCCC
Confidence            666 556789999999999876544322111                11246788888754           12234578


Q ss_pred             ceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC-CeEEEEEcCCCcceeeecccCccccccccCC
Q 010287          206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEV  283 (513)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  283 (513)
                      .+.+||+.....      ...+  .+...+.+++|+|+++.++++ .+ ..+.+||.++......+         .....
T Consensus        96 ~l~~~d~~~~~~------~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~  158 (300)
T TIGR03866        96 LVTVIDIETRKV------LAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQR  158 (300)
T ss_pred             eEEEEECCCCeE------EeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCCC
Confidence            999999865332      1111  122346789999999999988 44 45777898765432211         12234


Q ss_pred             eEEEEEeCCCCeEE-EEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE--eC
Q 010287          284 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY  360 (513)
Q Consensus       284 i~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~~  360 (513)
                      +.+++|+|++ ..+ +++..++.|++||+++++..    ..+......     ..........++|+|++++++.+  .+
T Consensus       159 ~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       159 PRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG-----VHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             ccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc-----cccccCCccceEECCCCCEEEEEcCCC
Confidence            5789999998 555 55567999999999887642    222111000     00000124568899999986653  34


Q ss_pred             CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCC
Q 010287          361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                      +.+.+||+++ ++....+.... .               ++.++|+|+|++|+++ ..+|.|.+||+.++ .....++..
T Consensus       229 ~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~  290 (300)
T TIGR03866       229 NRVAVVDAKT-YEVLDYLLVGQ-R---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVG  290 (300)
T ss_pred             CeEEEEECCC-CcEEEEEEeCC-C---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEcc
Confidence            7899999985 55554432211 1               3489999999999876 46899999999987 333555544


Q ss_pred             CCceeEEEEcC
Q 010287          440 KNPMRRQVQTP  450 (513)
Q Consensus       440 ~~~v~~~~~~~  450 (513)
                      ..| +.++++|
T Consensus       291 ~~~-~~~~~~~  300 (300)
T TIGR03866       291 RLP-WGVVVRP  300 (300)
T ss_pred             ccc-ceeEeCC
Confidence            333 6666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.3e-21  Score=168.98  Aligned_cols=255  Identities=13%  Similarity=0.094  Sum_probs=193.6

Q ss_pred             CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccccc
Q 010287          203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT  281 (513)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  281 (513)
                      ....+.+|.+...+.... .      .--+++|.+++-+|+|.+++.| -.|.|++|.+.++..+.        .+..|-
T Consensus        59 ~rp~l~vw~i~k~~~~~q-~------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHY  123 (476)
T KOG0646|consen   59 KRPLLHVWEILKKDQVVQ-Y------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHY  123 (476)
T ss_pred             cCccccccccCchhhhhh-h------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhc
Confidence            445788888765544331 0      1234679999999999999998 79999999999887553        457899


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEe
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD  359 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~  359 (513)
                      ..|+|+.|+.|+ .+|++|+.||.|.+|++...-.      .... ..+.+...+.+|.-+|+++...+.  ...+++++
T Consensus       124 Q~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~------a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS  195 (476)
T KOG0646|consen  124 QSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS------ADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS  195 (476)
T ss_pred             cceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc------cccC-CCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence            999999999999 9999999999999999754211      1111 134455567889999999998864  45677766


Q ss_pred             -CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC--------
Q 010287          360 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS--------  430 (513)
Q Consensus       360 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------  430 (513)
                       |.++++||+.. +..+.++..+..                +.+++.+|.++.++.|+.+|.|.+.++....        
T Consensus       196 ~D~t~k~wdlS~-g~LLlti~fp~s----------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  196 EDRTIKLWDLSL-GVLLLTITFPSS----------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             CCceEEEEEecc-ceeeEEEecCCc----------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence             59999999997 777777765543                3489999999999999999999988876532        


Q ss_pred             -------ccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEE
Q 010287          431 -------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI  500 (513)
Q Consensus       431 -------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  500 (513)
                             .....+.+|.+  +|++++++.||.+|++|+.||.|.+   |++...+.........++|+.+.+.|-.+-.
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~  334 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLERGI  334 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeeccccce
Confidence                   12245668887  9999999999999999999999999   6655433333333357889999887664433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=3.5e-21  Score=157.98  Aligned_cols=307  Identities=14%  Similarity=0.212  Sum_probs=194.9

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|+++..-+. .+.++++|+.||.|.+||+++-.-.....+-.                                    
T Consensus        44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------------------------------   86 (397)
T KOG4283|consen   44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------------------------------   86 (397)
T ss_pred             Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhcccee------------------------------------
Confidence            88999998653 47899999999999999998643111000000                                    


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                  ..+.+             ..+....+|...|..+.|-| |...|.++ -|.++++||.++.+....+ 
T Consensus        87 ------------k~~c~-------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F-  140 (397)
T KOG4283|consen   87 ------------KHKCI-------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF-  140 (397)
T ss_pred             ------------heeee-------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe-
Confidence                        00000             01111358888999999999 55566666 5999999999977654432 


Q ss_pred             ccCccccccccCCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                           +   ..+.|.+-+++|-..  .++|+|..|-.|++.|+.+|...    .+            +.+|.+.|.++.|
T Consensus       141 -----~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~------------LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  141 -----K---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HT------------LSGHRDGVLAVEW  196 (397)
T ss_pred             -----e---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----ee------------eccccCceEEEEe
Confidence                 1   245677777777431  47888899999999999998762    22            6778899999999


Q ss_pred             eecCCEEEE-Ee-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcc-ceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          349 ARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF-DKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       349 sp~~~~l~~-~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      +|..+++++ |+ ||.|++||++....+...+..|......+..  .+...+ -|+.++|+.|+.++++.+.|..+++|+
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~--~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK--TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc--ccccccceeeeeeecccchhhhhccCccceEEee
Confidence            998887665 55 5999999999755677777777754333222  111111 255899999999999999999999999


Q ss_pred             cCCCCccceeec--CCCCce---eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEE
Q 010287          426 CSEGSAESTTLE--ASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI  500 (513)
Q Consensus       426 ~~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  500 (513)
                      ..+|...+..+.  .|....   ..+. +.+...++.--.++.+.++....-   .+......|...|.+.++-|+-+..
T Consensus       275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg---s~ir~l~~h~k~i~c~~~~~~fq~~  350 (397)
T KOG4283|consen  275 MESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG---SFVRRLSTHLKRINCAAYRPDFEQC  350 (397)
T ss_pred             cccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCc---eEEEeeecccceeeEEeecCchhhh
Confidence            988743322111  111100   0011 111112221122233333111100   1111222367788999999987766


Q ss_pred             EEEc-CCcEEEEe
Q 010287          501 ACAA-SNSLYMYY  512 (513)
Q Consensus       501 a~~~-~~~~~i~~  512 (513)
                      .++. +.++..|.
T Consensus       351 ~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  351 FTGDMNGNIYMWS  363 (397)
T ss_pred             hccccCCcccccc
Confidence            6666 66666664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.8e-23  Score=196.41  Aligned_cols=202  Identities=17%  Similarity=0.204  Sum_probs=160.7

Q ss_pred             ccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          229 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ..|.+.|..+.|++... .|++| +||.|.|||++..+..+..-      -....+.|.+++|+..-...|++++.+|++
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            57899999999999654 88998 79999999999755443321      122357799999998876889999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEE--EeC--CeEEEEEccCCCCCeeeeecc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILS--RDY--MTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~--~~~--~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      .|||+|..+.+    ..+....          ....+..+.|+|+. ..|++  .+|  -.|.+||++....+++.+++|
T Consensus       187 ~iWDlr~~~pi----i~ls~~~----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H  252 (1049)
T KOG0307|consen  187 VIWDLRKKKPI----IKLSDTP----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH  252 (1049)
T ss_pred             eeccccCCCcc----cccccCC----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence            99999987543    2222111          11357889999975 33333  334  789999999888899999999


Q ss_pred             cccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeec
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS  459 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  459 (513)
                      +..               |.++.|.+.+ ++|++++.|+.|.+|+.+++ +.+..+....+++..+.|.|... .++.++
T Consensus       253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence            875               5699999866 88999999999999999997 56677777888999999999888 778889


Q ss_pred             CCCeEEE
Q 010287          460 LSGVVRR  466 (513)
Q Consensus       460 ~d~~i~~  466 (513)
                      .||.|.|
T Consensus       317 fdgkI~I  323 (1049)
T KOG0307|consen  317 FDGKISI  323 (1049)
T ss_pred             eccceee
Confidence            9999999

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=161.20  Aligned_cols=287  Identities=15%  Similarity=0.160  Sum_probs=205.9

Q ss_pred             CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccc------cceeeEeeccccCCeEEEEec-------c
Q 010287          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLV------AGCRRIYAHAHDYHINSISNN-------S  242 (513)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~-------~  242 (513)
                      ...|+|||.++            ++...+..+++|++........      ......+-......|...+|-       |
T Consensus        54 gckWSPDGSci------------L~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   54 GCKWSPDGSCI------------LSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             cceeCCCCceE------------EeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence            44799999998            8888999999999854322111      111111112223446666663       5


Q ss_pred             CCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccccc---CCeEEEEEeCCCCeEEEEEeCCCcEEEEEc-CCcccc
Q 010287          243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALC  317 (513)
Q Consensus       243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~  317 (513)
                      +..+++++ .+.-|++||.-+++.....      ....|.   ....+++|+||| ..|+ ++....|++||+ |.|..+
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c  193 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDC  193 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCC
Confidence            66777777 6999999999988754322      122233   235699999999 6555 468899999999 666654


Q ss_pred             cccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287          318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND  395 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (513)
                      ........+.         .+..+-+.+++|+| +...++.|+. ..+-||.-.. +.++..+.+|.+.           
T Consensus       194 ~vy~t~~~~k---------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG-----------  252 (406)
T KOG2919|consen  194 PVYTTVTKGK---------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG-----------  252 (406)
T ss_pred             cchhhhhccc---------ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC-----------
Confidence            4322222221         23347799999999 5568888887 8888888774 8899999888876           


Q ss_pred             CccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCC-ceeEEEE--cCCCCceeeecCCCeEEEecCCC
Q 010287          396 SIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKGAD  471 (513)
Q Consensus       396 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~~~~~d~~i~~~~~~~  471 (513)
                          |+.++|.++|+.|.+|. .|-.|..||++.....+..+..|.. .-..+.|  .|.+++|++|+.||.|++   |+
T Consensus       253 ----vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v---wd  325 (406)
T KOG2919|consen  253 ----VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV---WD  325 (406)
T ss_pred             ----eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE---Ee
Confidence                67999999999999988 5788999999987777788888876 5556666  688999999999999999   33


Q ss_pred             CCcc-ccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          472 NSAL-DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       472 ~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                      .... ........++..++.++++|--.++|+++...++-
T Consensus       326 lk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~  365 (406)
T KOG2919|consen  326 LKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK  365 (406)
T ss_pred             cCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence            3210 11122334688999999999999999988776553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=3.8e-21  Score=173.75  Aligned_cols=146  Identities=10%  Similarity=0.157  Sum_probs=109.1

Q ss_pred             cEEEEEEee-cCCEEEEEeC-CeEEEEEccCCC------CCeeeeecccccccccccccccCCccceeeEEEeCC-CCEE
Q 010287          342 SISDIKFAR-NGRHILSRDY-MTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRV  412 (513)
Q Consensus       342 ~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l  412 (513)
                      .|+.+.|.| |.+.|+++.| |.|++|.+..++      .+...+..|...               |+.+.|+|- .+.|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadvL  693 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADVL  693 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhHh
Confidence            567888998 7777777665 999999997633      334455566554               558999994 4688


Q ss_pred             EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA  492 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  492 (513)
                      ++++.|-+|++||+.+. .....+.+|.+.|..++|+|+|+.+|+.+.||.++++........-..+. -....+-..+.
T Consensus       694 a~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-gpvgtRgARi~  771 (1012)
T KOG1445|consen  694 AVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK-GPVGTRGARIL  771 (1012)
T ss_pred             hhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC-CCccCcceeEE
Confidence            99999999999999987 55688999999999999999999999999999999922221111001110 01134557888


Q ss_pred             EeCCCCEEEEEc
Q 010287          493 WHPSENSIACAA  504 (513)
Q Consensus       493 ~sp~~~~la~~~  504 (513)
                      |.-||+++++.+
T Consensus       772 wacdgr~viv~G  783 (1012)
T KOG1445|consen  772 WACDGRIVIVVG  783 (1012)
T ss_pred             EEecCcEEEEec
Confidence            999999988665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=1.1e-20  Score=154.92  Aligned_cols=208  Identities=14%  Similarity=0.244  Sum_probs=156.1

Q ss_pred             cccCCeEEEEecc-CCCEEEEEc-CCeEEEEEcCCCcc-eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          230 AHDYHINSISNNS-DGETFISAD-DLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       230 ~h~~~v~~~~~~~-~~~~l~s~~-d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      .+..++++..|+. +.++|.+++ |.+..|||++++.. .++      ..+-.|...|..++|...+..+|++.+.||.+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk------TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv  221 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK------TQLIAHDKEVYDIAFLKGSRDVFASVGADGSV  221 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee------eEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence            4456789999988 566777774 99999999997622 111      14567999999999999887899999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      |+||+|..+-.   ...++.+..          +.+...++|++ |-.++++ +-+ ..|.|.|++.+..++..++.|..
T Consensus       222 RmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a  288 (364)
T KOG0290|consen  222 RMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA  288 (364)
T ss_pred             EEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc
Confidence            99999975431   233444331          25688899998 5567777 445 89999999999999999999998


Q ss_pred             cccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                      .+               ..++|.|.. ..|+++++|..+.+||+......     .-..|+           |       
T Consensus       289 ~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi-----------l-------  330 (364)
T KOG0290|consen  289 SV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI-----------L-------  330 (364)
T ss_pred             cc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------h-------
Confidence            74               489999965 57999999999999999854220     000111           0       


Q ss_pred             eEEEecCCCCCccccCCccccccCCeeEEEEeCC-CCEEEEEcCCcEEEEe
Q 010287          463 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACAASNSLYMYY  512 (513)
Q Consensus       463 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~i~~  512 (513)
                                        ...-.+.|+.++|+|. ..++|++..+.+.|..
T Consensus       331 ------------------ay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR  363 (364)
T KOG0290|consen  331 ------------------AYTAGGEVNQIQWSSSQPDWIAICFGKKLEILR  363 (364)
T ss_pred             ------------------hhhccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence                              0012678999999965 6889999988887754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=5.1e-21  Score=167.93  Aligned_cols=209  Identities=14%  Similarity=0.169  Sum_probs=164.9

Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  276 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~  276 (513)
                      .++++..+.+++||+...-       ...++.+|...|+++.++....+|+++ ..|.|.+..+.++...-.+      .
T Consensus        94 ~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f------~  160 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF------T  160 (673)
T ss_pred             eeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce------e
Confidence            3788899999999997422       223468999999999999999999999 6899999999876654321      1


Q ss_pred             cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-E
Q 010287          277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-I  355 (513)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l  355 (513)
                       .+....|+-+.|+|....+|.+++.+|.|.+||+......    ..           ....|+.+...|+|+|..+. |
T Consensus       161 -~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~-----------~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  161 -IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FH-----------ASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             -cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cc-----------hhhhccCCcCcceecCCccceE
Confidence             1224557789999998778899999999999998765431    11           23567789999999996654 4


Q ss_pred             EE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccce
Q 010287          356 LS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST  434 (513)
Q Consensus       356 ~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  434 (513)
                      ++ |-|..|.+||+.. ......+.....                ...++|+++|.+|+.|+..|.|..||++..+..+.
T Consensus       225 vsVG~Dkki~~yD~~s-~~s~~~l~y~~P----------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~  287 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRS-QASTDRLTYSHP----------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA  287 (673)
T ss_pred             EEecccceEEEeeccc-ccccceeeecCC----------------cceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence            44 5569999999985 555555544333                23899999999999999999999999998878889


Q ss_pred             eecCCCCceeEEEEcCCC
Q 010287          435 TLEASKNPMRRQVQTPSR  452 (513)
Q Consensus       435 ~~~~~~~~v~~~~~~~~~  452 (513)
                      ++..|...|.+++|.|..
T Consensus       288 v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  288 VRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EeeecccceeEEEeeecc
Confidence            999999999999997764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.9e-21  Score=161.79  Aligned_cols=286  Identities=17%  Similarity=0.243  Sum_probs=191.6

Q ss_pred             CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCc
Q 010287           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (513)
Q Consensus        48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~  127 (513)
                      ..+|++..+|.|+|||..+++.                       ..+|.++.            ..++.++|.......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~-----------------------l~~fk~~~------------~~~N~vrf~~~ds~h   85 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL-----------------------LEEFKGPP------------ATTNGVRFISCDSPH   85 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh-----------------------hheecCCC------------CcccceEEecCCCCC
Confidence            5799999999999999888663                       36788888            789999997533456


Q ss_pred             eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCce
Q 010287          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (513)
Q Consensus       128 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  207 (513)
                      .+.+++.||+|++||++.......+..                                                     
T Consensus        86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-----------------------------------------------------  112 (376)
T KOG1188|consen   86 GVISCSSDGTVRLWDIRSQAESARISW-----------------------------------------------------  112 (376)
T ss_pred             eeEEeccCCeEEEEEeecchhhhheec-----------------------------------------------------
Confidence            788999999999999987653332211                                                     


Q ss_pred             eceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE-----cCCeEEEEEcCCCcceeeecccCcccccccc
Q 010287          208 RLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLT  281 (513)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  281 (513)
                                           .++. .+..|++.+..++.+++|     .+-.|.+||++..++.+..      -.+.|.
T Consensus       113 ---------------------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH~  165 (376)
T KOG1188|consen  113 ---------------------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESHN  165 (376)
T ss_pred             ---------------------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhcc
Confidence                                 1222 345677777677788876     3788999999987764432      347799


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--CEEEEEe
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRD  359 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~  359 (513)
                      +.|+++.|+|..+++|++|+.||.|.+||+......+....+             -.|...|.++.|..++  +......
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-------------iN~~sSI~~igw~~~~ykrI~clTH  232 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-------------INHGSSIHLIGWLSKKYKRIMCLTH  232 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-------------hcccceeeeeeeecCCcceEEEEEc
Confidence            999999999999999999999999999998754322221222             2244679999999877  5333345


Q ss_pred             CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeC-CCcEEEEecC---CC--Ccc
Q 010287          360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCS---EG--SAE  432 (513)
Q Consensus       360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~---~~--~~~  432 (513)
                      ..+..+|++.. +.+...+....-........  -.+-+ +.. +.+| +....+.++. -|...++-+.   ++  ...
T Consensus       233 ~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~--~~~dY-~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~  307 (376)
T KOG1188|consen  233 METFAIYELED-GSEETWLENPDVSADDLRKE--DNCDY-VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE  307 (376)
T ss_pred             cCceeEEEccC-CChhhcccCccchhhhHHhh--hhhhh-eee-cccCCCcceEEEeccccCceeEEEeeecccccccCc
Confidence            59999999985 55443332221100000000  00000 001 2223 3445554443 5566655443   22  122


Q ss_pred             ceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          433 STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       433 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ...+.+ |..-|+++.|...+..+.+|++||.+.+
T Consensus       308 ~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~  342 (376)
T KOG1188|consen  308 PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA  342 (376)
T ss_pred             cccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence            345555 6777889999999999999999999999

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-20  Score=175.43  Aligned_cols=272  Identities=13%  Similarity=0.192  Sum_probs=199.6

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..-+.|+|  .++|..+++++.||.|++|+.........                                         
T Consensus        14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~-----------------------------------------   50 (933)
T KOG1274|consen   14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPE-----------------------------------------   50 (933)
T ss_pred             CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCc-----------------------------------------
Confidence            77889999  55888999999999999998765421000                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                   .                     +.-+...|.+++..  +..|++| .+++|.+|.+..+...-    
T Consensus        51 -------------t---------------------i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~----   90 (933)
T KOG1274|consen   51 -------------T---------------------IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDT----   90 (933)
T ss_pred             -------------h---------------------hhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccc----
Confidence                         0                     01133446666554  4478887 79999999988655321    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+....-++++++++.+| ++++.|+.|-.|++-++.....    .+.            +.+|.++|.++.|+|+
T Consensus        91 ----iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~----~~~------------lrgh~apVl~l~~~p~  149 (933)
T KOG1274|consen   91 ----ILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQ----EKV------------LRGHDAPVLQLSYDPK  149 (933)
T ss_pred             ----eeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccch----hee------------ecccCCceeeeeEcCC
Confidence                223457789999999999 9999999999999999876554    222            5667799999999999


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.+||+.+ +|.|++||+.. +....++.+-.......    .   -..+..++|+|+|..++....|+.|++|+...+.
T Consensus       150 ~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~----~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  150 GNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFI----L---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             CCEEEEEecCceEEEEEccc-chhhhhcccCCcccccc----c---cceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence            99999976 59999999995 66666655432211000    0   0113478999998888888899999999999874


Q ss_pred             ccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          431 AES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       431 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                      ... ...+.+...+..+.|+|.|+|||+++.||.|-+   |+...    ....++...|.+++|.|+++.|-.-
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v---Wnv~t----~~~~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV---WNVDT----HERHEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCcEEE---Eeccc----chhccccceeEEEecCCCCCeeEEE
Confidence            443 222344445889999999999999999999999   54432    1113457889999999999877643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=4.2e-20  Score=167.11  Aligned_cols=204  Identities=16%  Similarity=0.169  Sum_probs=145.1

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-
Q 010287          283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-  360 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-  360 (513)
                      .|+++.|+|-+...|+.++.||.|++|.+..+.....         ...+...++.|...|+++.|+| -...|++++. 
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence            3677888887667999999999999999987654221         1112234778889999999999 4567777664 


Q ss_pred             CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCC
Q 010287          361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK  440 (513)
Q Consensus       361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  440 (513)
                      .+|++||+++ ++....+.+|...               |+.++|||||+.+++.+.||+|++|+..++...+..-++..
T Consensus       700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv  763 (1012)
T KOG1445|consen  700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV  763 (1012)
T ss_pred             ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence            9999999997 8888889999876               56999999999999999999999999998765554443332


Q ss_pred             C-ceeEEEEcCCCCceeeecCCCeEE----EecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEE
Q 010287          441 N-PMRRQVQTPSRPSRPLGSLSGVVR----RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMY  511 (513)
Q Consensus       441 ~-~v~~~~~~~~~~~l~~~~~d~~i~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~  511 (513)
                      + .-..+.|.-+|+++++.+.|..-.    +++...+....+....++..-.+.--.+.+|.+.|...+  +..+++|
T Consensus       764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY  841 (1012)
T ss_pred             cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEE
Confidence            2 234688999999998888875543    333333322122223333344555566778877766444  4455554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=1.7e-20  Score=160.80  Aligned_cols=334  Identities=12%  Similarity=0.173  Sum_probs=216.4

Q ss_pred             cccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        35 ~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ..+|.++.|.++.. .+|||+.|..|+||.+...+.-+.              .....+...+..|+            .
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~   66 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R   66 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence            57999999999866 999999999999999876553210              02445677788888            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      +|+++.|+|  +|+.|++|+.+|.|.+|....-...   ...                           . .        
T Consensus        67 aVN~vRf~p--~gelLASg~D~g~v~lWk~~~~~~~---~~d---------------------------~-e--------  105 (434)
T KOG1009|consen   67 AVNVVRFSP--DGELLASGGDGGEVFLWKQGDVRIF---DAD---------------------------T-E--------  105 (434)
T ss_pred             eeEEEEEcC--CcCeeeecCCCceEEEEEecCcCCc---ccc---------------------------c-h--------
Confidence            999999955  7889999999999999987651110   000                           0 0        


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                           .+...+....+..+.+|...|..++|+|++.+++++ -|+.+++||+..+....     
T Consensus       106 ---------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-----  159 (434)
T KOG1009|consen  106 ---------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-----  159 (434)
T ss_pred             ---------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-----
Confidence                                 000000112233457899999999999999999999 69999999999776442     


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc-eeecc--ccCCCCc--ccc--ccccccEEE
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-KLFEE--QEAPGTR--SFF--TEIIASISD  345 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~--~~~~~~~--~~~--~~~~~~v~~  345 (513)
                         .+..|...+..++|.|-+ +++++-+.|...+.+.+...+...... ..+..  ......+  ..+  .........
T Consensus       160 ---~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR  235 (434)
T KOG1009|consen  160 ---ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR  235 (434)
T ss_pred             ---eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence               457899999999999998 899999999988877766544321111 00100  0000000  001  112235567


Q ss_pred             EEEeecCCEEEEEe-----CCe-----EEEEEccCCCCCeeeeecccccccc--cccccccCCccceee-EEEeCCCCEE
Q 010287          346 IKFARNGRHILSRD-----YMT-----LKLWDINMDSGPVATFQVHEHLRPK--LCDLYENDSIFDKFE-CCLSGDGGRV  412 (513)
Q Consensus       346 i~~sp~~~~l~~~~-----~~~-----v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l  412 (513)
                      ++|+|+|.++++..     .+.     .++|+-..-.++...+.......-.  .+..|-.-+....+. +---|-+-.+
T Consensus       236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence            88999999999732     133     3555544333444444333322100  000000000000001 1111333345


Q ss_pred             EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +.++. +.|++||.++-......-..|-.+++.++|+++|..|+..|.||...+
T Consensus       316 aiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  316 AIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             EEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            56665 579999999875565677789999999999999999999999999877

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1.6e-20  Score=169.81  Aligned_cols=271  Identities=15%  Similarity=0.177  Sum_probs=179.9

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ...|...|..+.|-|....|+++ +|.++++||+++.+..-.      ..+.+|...|.+++|.|+++..|++|+.||.|
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI  169 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------eeecccccccchhhhccCCCcceeeccCCCcE
Confidence            46899999999999966677777 799999999997654321      13578999999999999999999999999999


Q ss_pred             EEEEcCCccccc--c-cceeeccccC------CCCc--cccccccccEEE---EEEeecCCEEEEEe--CCeEEEEEccC
Q 010287          307 RLIDMRQSALCD--T-HSKLFEEQEA------PGTR--SFFTEIIASISD---IKFARNGRHILSRD--YMTLKLWDINM  370 (513)
Q Consensus       307 ~vwd~~~~~~~~--~-~~~~~~~~~~------~~~~--~~~~~~~~~v~~---i~~sp~~~~l~~~~--~~~v~iwd~~~  370 (513)
                      .|||++-.....  . ..+.+..++.      +..+  .....+...|.+   +.+..|...|++++  |+.|+|||++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            999998644110  0 0111111111      1000  112234445555   55667888898854  59999999986


Q ss_pred             CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-eeecCCCCc--eeEEE
Q 010287          371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNP--MRRQV  447 (513)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~--v~~~~  447 (513)
                      +....+.-     ......-.+++..-.+++++.....|.+|.+...|+.|++|++.+..... ..+.++...  -..-.
T Consensus       250 ~~~~~r~e-----p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~  324 (720)
T KOG0321|consen  250 NYTAYRQE-----PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE  324 (720)
T ss_pred             cccccccC-----CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence            32211110     01111112223334456678888888998888889999999998753322 333333221  22345


Q ss_pred             EcCCCCceeeecCCCeEEEecCCCCCccccC-CccccccCCeeEEEEeCCC--CEEEEEcCCcEEEEe
Q 010287          448 QTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPSE--NSIACAASNSLYMYY  512 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~--~~la~~~~~~~~i~~  512 (513)
                      .+|++.+|++|+.|....+   |.....+.. ....+|...|+.++|.|..  +.+++..|.++.||.
T Consensus       325 lSpd~~~l~SgSsd~~ayi---w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  325 LSPDDCSLLSGSSDEQAYI---WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             cCCCCceEeccCCCcceee---eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            6899999999999999999   333322222 2345799999999999874  555565588888885

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=1.6e-19  Score=165.26  Aligned_cols=231  Identities=12%  Similarity=0.096  Sum_probs=151.6

Q ss_pred             eEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +.+++|+|+++.++ ++ .++.|++||..+++....        +..+. .+..+.|+|++..++++++.++.+++||++
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            56789999998774 55 689999999987654321        22222 256789999984344555678999999998


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      +...    +..++..             ..+.+++|+|++.+++++..  ..+.+||... .+..........       
T Consensus       104 ~~~~----~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~-------  158 (300)
T TIGR03866       104 TRKV----LAEIPVG-------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVLVDQR-------  158 (300)
T ss_pred             CCeE----EeEeeCC-------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEEcCCC-------
Confidence            7553    2222211             23678999999999998764  4677889875 444433322111       


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCC-----CC--ceeEEEEcCCCCceee-ecCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEAS-----KN--PMRRQVQTPSRPSRPL-GSLS  461 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~-----~~--~v~~~~~~~~~~~l~~-~~~d  461 (513)
                               ...++|+|++++|+++ ..++.|++||+.+++.. ..+..+     ..  ....+.++|+++.++. .+.+
T Consensus       159 ---------~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       159 ---------PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             ---------ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-eeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence                     1268999999988654 46899999999987432 222211     11  1236789999998544 3445


Q ss_pred             CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEeC
Q 010287          462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYYA  513 (513)
Q Consensus       462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~~  513 (513)
                      +.+.+.+....   +.. ....+...+.+++|+|++++|+++.  ++.+.+|..
T Consensus       229 ~~i~v~d~~~~---~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       229 NRVAVVDAKTY---EVL-DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             CeEEEEECCCC---cEE-EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            66777322111   111 1122456799999999999998763  788999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.5e-20  Score=159.70  Aligned_cols=307  Identities=14%  Similarity=0.167  Sum_probs=197.0

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .+|..+.|.+... +.+++|+.|..|++|.+..+.-..                                          
T Consensus        14 ~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~------------------------------------------   50 (434)
T KOG1009|consen   14 EPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGG------------------------------------------   50 (434)
T ss_pred             CceEEEEeccCcc-cceecccCccceeeeeeeecCCCC------------------------------------------
Confidence            6699999965322 389999999999999987654111                                          


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc------
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ------  265 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~------  265 (513)
                                ++..+..               ...+..|...|+++.|+|+|+.|++| ++|.|.+|.......      
T Consensus        51 ----------~~~~V~y---------------~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   51 ----------GDMKVEY---------------LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             ----------CceeEEE---------------eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence                      0011111               11257899999999999999999999 799999997761000      


Q ss_pred             --e-eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          266 --S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       266 --~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                        . .+.+- ....+.+|...|..++|+|++ .++++++.|..+++||+..|.+.    ..            +.+|...
T Consensus       106 ~~~~ke~w~-v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~------------~~dh~~y  167 (434)
T KOG1009|consen  106 ADLNKEKWV-VKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AI------------LDDHEHY  167 (434)
T ss_pred             hhhCccceE-EEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----ee------------ccccccc
Confidence              0 00000 002457799999999999999 99999999999999999998863    22            4556688


Q ss_pred             EEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeee-----c--ccccccccccccccCCccc-eeeEEEeCCCCEEE
Q 010287          343 ISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQ-----V--HEHLRPKLCDLYENDSIFD-KFECCLSGDGGRVA  413 (513)
Q Consensus       343 v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~  413 (513)
                      +..++|.|-++++++ +.+...+.+.+.. .+.+....     .  ..........+++++.+.. ...++|+|||..|+
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            999999999999998 4456566666553 22221111     1  1111233344565555432 34689999999998


Q ss_pred             EEeC----CC-----cEEEEecCCCCccceeecCCCCceeEEEEcCC------------------CCceeeecCCCeEEE
Q 010287          414 TGSY----SN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS------------------RPSRPLGSLSGVVRR  466 (513)
Q Consensus       414 ~~~~----dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~d~~i~~  466 (513)
                      +...    ++     ..++|+-+..+.....+.....+...+.++|-                  +-.+|.+..| .|.+
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyv  325 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYV  325 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEE
Confidence            6532    22     33666655444444555555666655555431                  2223333333 3333


Q ss_pred             ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287          467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY  509 (513)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~  509 (513)
                      +.+.....  +-...--|-..|++++|++||..|+..|.|+.+
T Consensus       326 ydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC  366 (434)
T KOG1009|consen  326 YDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC  366 (434)
T ss_pred             eccccccc--eEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence            33332220  111111367899999999999999999977765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=2.1e-20  Score=155.87  Aligned_cols=317  Identities=17%  Similarity=0.214  Sum_probs=207.2

Q ss_pred             cccccccEEEEEEcCC-----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-c-CCCCcc
Q 010287           31 EVQEVDIISAIEFDKS-----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-Q-SHEPEF  103 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~-----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~~  103 (513)
                      ...|..+|..++|++-     ...+|+.+.+ ++.||+......+                    +..+.+ . .|+   
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~d~~---   89 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADEDHD---   89 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCCCCC---
Confidence            4468899999999852     3466776654 7999996544321                    111111 1 133   


Q ss_pred             cccccccccccceeEEEeecCC--CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceecc
Q 010287          104 DYLKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (513)
Q Consensus       104 ~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (513)
                               +.-+.++|+-..+  +.++++++.-|.|+|.|+.++++...                              
T Consensus        90 ---------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------  130 (385)
T KOG1034|consen   90 ---------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------  130 (385)
T ss_pred             ---------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------------------------
Confidence                     5677778865322  45788889999999999988764331                              


Q ss_pred             CCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEE
Q 010287          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWN  259 (513)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd  259 (513)
                                                                    +.+|...|+.+.+.|+. ++++++ .|..|++|+
T Consensus       131 ----------------------------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen  131 ----------------------------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             ----------------------------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence                                                          35888899999999964 667777 699999999


Q ss_pred             cCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc--ceeeccccCC----CCc
Q 010287          260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQEAP----GTR  333 (513)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~----~~~  333 (513)
                      +++.... .++    .-+.+|.+.|.++.|++++ ..|++++.|..+++|++...+.....  ...+......    ...
T Consensus       165 I~~~~Cv-~Vf----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  165 IQTDVCV-AVF----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             ccCCeEE-EEe----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            9976543 333    2568999999999999999 89999999999999999854321110  1111111100    000


Q ss_pred             c------ccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee--eEE
Q 010287          334 S------FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF--ECC  404 (513)
Q Consensus       334 ~------~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~  404 (513)
                      .      .-.-|...|-|+.|-  |.++++-+ ++.|..|..-.-.+.+......+.....+..+.-..|  +++  ..+
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~  314 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFA  314 (385)
T ss_pred             cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEe
Confidence            0      113477788888876  67888844 5899999872112222222111111111111000000  122  456


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |.|-+++||.|...|.|++||++...... .++.  .....|+..+|+.++..|+....|+.|--
T Consensus       315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr  379 (385)
T KOG1034|consen  315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR  379 (385)
T ss_pred             ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence            67788999999999999999999875532 3333  33567899999999999999888888743

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.8e-20  Score=156.79  Aligned_cols=312  Identities=13%  Similarity=0.104  Sum_probs=213.3

Q ss_pred             cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        27 ~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ++....+|.+.|+++.||.++++||+|+.|..+++|++...-..               +-|.  . ..+.+|.      
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------k~~K--P-I~~~~~~------  103 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------KTPK--P-IGVMEHP------  103 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---------------cCCC--C-ceeccCc------
Confidence            34456789999999999999999999999999999997532110               0000  0 1122222      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                          |...|.|++|  ...+..+++|..+++|.+.|+++.+.+.++...                               
T Consensus       104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-------------------------------  146 (609)
T KOG4227|consen  104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANEN-------------------------------  146 (609)
T ss_pred             ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeeccc-------------------------------
Confidence                1278999999  556679999999999999999987654432211                               


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                                 ...+.|..+..+|..+.|++. .++.|.+||.+....
T Consensus       147 -------------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  147 -------------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             -------------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence                                                       122468899999988888887 799999999986553


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ...++     .+........++.|+|..+.+|++.+..+-+.+||.+.....   +....+...      +.......++
T Consensus       184 ~~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~~------L~~~~~~~M~  249 (609)
T KOG4227|consen  184 PISLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFKG------LPQENTEWMG  249 (609)
T ss_pred             CCcee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhcccc------Ccccchhhhh
Confidence            33322     222334567899999999999999999999999998865421   111111110      1111123577


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      +.|+|+|..+.+--. ..-.+||+.+..-++..+. |...  .   .+....   +-+++|..|-. +++|+.+=.|++|
T Consensus       250 ~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~--G---Y~N~~T---~KS~~F~~D~~-v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  250 SLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN--G---YCNIKT---IKSMTFIDDYT-VATGSDHWGIHIW  319 (609)
T ss_pred             eeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCC--c---ceeeee---eeeeeeeccee-eeccCcccceEEE
Confidence            899999988777443 4445678774222222222 1110  0   011111   23788886654 8999999999999


Q ss_pred             ecCCC----------------------CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          425 GCSEG----------------------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       425 d~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+...                      .....++++|..-++.+.|+|....|++.+....++|
T Consensus       320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl  383 (609)
T KOG4227|consen  320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL  383 (609)
T ss_pred             ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence            87542                      1233677899999999999999999999999999999

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3e-19  Score=167.98  Aligned_cols=408  Identities=14%  Similarity=0.154  Sum_probs=241.9

Q ss_pred             EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      ...||+|+++++.... ..|.||...+++.+                       +.+.+|.            .++..+.
T Consensus        21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~   64 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTG-NFVKVYSTATGECI-----------------------TSLEDHT------------APLTSVI   64 (792)
T ss_pred             ccccccCCcEEEEeeC-CEEEEEecchHhhh-----------------------hhccccc------------Cccceee
Confidence            3468999998887664 48999999988864                       5678888            8899999


Q ss_pred             EeecCCC-ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCC------C-CcccCcccccC-----ceeccCCCcc
Q 010287          120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN------G-PIFGSHVSAIP-----KSYMANGGCG  186 (513)
Q Consensus       120 ~~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~-----~~~~~~g~~~  186 (513)
                      +.|.... .++++++.||.|++||...+.+...+....+.......      . ...........     ...+-.++..
T Consensus        65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~  144 (792)
T KOG1963|consen   65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF  144 (792)
T ss_pred             ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence            9886554 57788999999999999999887776655443110000      0 00000000000     0000011111


Q ss_pred             ccc-cCCCC----------CCCCcCCC-------CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          187 ERN-FGCAS----------NDSSFPPG-------GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       187 ~~~-~~~~~----------~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                      .+. .....          ..+.....       -...+.+|.+....   .....+.....|...+++.+++|++++++
T Consensus       145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~~t~~~~spn~~~~A  221 (792)
T KOG1963|consen  145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT---KHTSSRDITVHHTFNITCVALSPNERYLA  221 (792)
T ss_pred             EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc---eeeccchhhhhhcccceeEEeccccceEE
Confidence            000 00000          01111111       11223333332211   11111112245677789999999999999


Q ss_pred             EE-cCCeEEEEEcCC-CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          249 SA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       249 s~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      +| .||+|.+|.--. .....     .+..+..|...|++++|+++| .+|++|+..+-+.+|.+.+++.  +       
T Consensus       222 a~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--q-------  286 (792)
T KOG1963|consen  222 AGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--Q-------  286 (792)
T ss_pred             EeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc--c-------
Confidence            99 699999996432 11111     123567899999999999999 9999999999999999988763  1       


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeeec-------------------------
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQV-------------------------  380 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~-------------------------  380 (513)
                              ++....++|..+.+|||+.+.+. ..|..|.+-.... .....++.+                         
T Consensus       287 --------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  287 --------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             --------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence                    12333478999999999987776 4567888776532 211111111                         


Q ss_pred             -------ccccccccccccccCCc------------------cceeeEEEeCCCCEEEEEe--------CC--CcEEEEe
Q 010287          381 -------HEHLRPKLCDLYENDSI------------------FDKFECCLSGDGGRVATGS--------YS--NLFRVFG  425 (513)
Q Consensus       381 -------~~~~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l~~~~--------~d--g~i~vwd  425 (513)
                             |.+.+ ...+++....+                  ..++++..+-.|.+++|.-        .|  -.+++|-
T Consensus       358 ~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~  436 (792)
T KOG1963|consen  358 NSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ  436 (792)
T ss_pred             CceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence                   11100 00011111111                  1344555566677777653        12  2467776


Q ss_pred             cCCCCcc--c--eeecCCCCceeEEEEc-CCCC-ceeeecCCCeEEE--e-------cCCCCCccccCCccccccCCeeE
Q 010287          426 CSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--V-------KGADNSALDANGNAFDFSMKLLH  490 (513)
Q Consensus       426 ~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~~~~~d~~i~~--~-------~~~~~~~~~~~~~~~~~~~~i~~  490 (513)
                      .....+.  +  .....|...+...++. +... .+++++.||.+++  .       +....|.....+ . -|..+|++
T Consensus       437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-s-y~k~~i~a  514 (792)
T KOG1963|consen  437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-S-YHKTPITA  514 (792)
T ss_pred             EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-c-cccCcccc
Confidence            5433221  1  2233677666655554 3333 6899999999999  1       111111100111 1 26789999


Q ss_pred             EEEeCCCCEEEEEcCCcEEEEeC
Q 010287          491 LAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       491 ~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      ++|+.||..||++.++.+.+|..
T Consensus       515 ~~fs~dGslla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  515 LCFSQDGSLLAVSFDDTITIWDY  537 (792)
T ss_pred             hhhcCCCcEEEEecCCEEEEecC
Confidence            99999999999999999999963

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.5e-19  Score=149.45  Aligned_cols=271  Identities=13%  Similarity=0.234  Sum_probs=180.0

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~  305 (513)
                      ..+|.+-|.++.|.+.|+.+++| .|++++|||.+........-    ...+.|.+.|..+.|. |.-++.+|+++.|++
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            46888999999999999999999 79999999986555443321    2457899999999995 443489999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeeccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      +.||.-...... ..-+.+.      .+..+...++.|++|.|.|  -|-.|++++ ||.++||+...... +.......
T Consensus        85 v~iWEE~~~~~~-~~~~~Wv------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~  156 (361)
T KOG2445|consen   85 VSIWEEQEKSEE-AHGRRWV------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQH  156 (361)
T ss_pred             eeeeeecccccc-cccceeE------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhh
Confidence            999975321110 0011111      1112344557899999999  466777765 59999999764222 22111111


Q ss_pred             ccccccccccccCCccceeeEEEeCC---CCEEEEEeCC-----CcEEEEecCCCCc---cceeecCCCCceeEEEEcCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~  451 (513)
                      ....-+.  ..........++.|+|.   .++|+.|+.+     +.++||.......   ...++..|..||+.++|.|+
T Consensus       157 Ei~~~~~--pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  157 EIQNVID--PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhccC--CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence            1000000  00011122347889874   3578888866     5789998766542   23677799999999999997


Q ss_pred             C----CceeeecCCCeEEEecCCC----------CC-------ccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287          452 R----PSRPLGSLSGVVRRVKGAD----------NS-------ALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY  509 (513)
Q Consensus       452 ~----~~l~~~~~d~~i~~~~~~~----------~~-------~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~  509 (513)
                      -    ..||+++.|| |+|.+-..          ..       ..+.....-+|.+.|..+.|+-.|..|++.+ |+.++
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence            4    3789999999 88811110          00       0011222336899999999999999999655 77778


Q ss_pred             EEeC
Q 010287          510 MYYA  513 (513)
Q Consensus       510 i~~~  513 (513)
                      +|.|
T Consensus       314 LWka  317 (361)
T KOG2445|consen  314 LWKA  317 (361)
T ss_pred             ehhh
Confidence            8764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=5.1e-20  Score=167.53  Aligned_cols=270  Identities=14%  Similarity=0.226  Sum_probs=201.5

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  116 (513)
                      .|..++|-|||..|+.+..+ ++.|||..++...                       ..+.+|.            +.|+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~ll-----------------------qtLKgHK------------DtVy   57 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLL-----------------------QPLKGHK------------DTVY   57 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccc-----------------------ccccccc------------ceEE
Confidence            89999999999887776544 7999999887753                       6789999            9999


Q ss_pred             eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (513)
                      +++|  +.||..+++|+.|+.|.+|+-+-.-..                                               
T Consensus        58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~L-----------------------------------------------   88 (1081)
T KOG1538|consen   58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGIL-----------------------------------------------   88 (1081)
T ss_pred             EEEE--ccCCceeccCCCceeEEEeccccccee-----------------------------------------------
Confidence            9999  669999999999999999986532111                                               


Q ss_pred             CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccc
Q 010287          197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN  276 (513)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  276 (513)
                                                     -..|.+.|.|+.|+|-...|++++=...-+|..+... ..+        
T Consensus        89 -------------------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-V~K--------  128 (1081)
T KOG1538|consen   89 -------------------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-VSK--------  128 (1081)
T ss_pred             -------------------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhh-HHh--------
Confidence                                           1478888999999999999999854556689876322 111        


Q ss_pred             cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC----
Q 010287          277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG----  352 (513)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~----  352 (513)
                       ......+.+++|..|| ++++.|-.+|+|.+-+- +++..   . .++.+         .+..++|.+++|+|..    
T Consensus       129 -~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk-~gEek---~-~I~Rp---------gg~Nspiwsi~~~p~sg~G~  192 (1081)
T KOG1538|consen  129 -HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNK-NGEEK---V-KIERP---------GGSNSPIWSICWNPSSGEGR  192 (1081)
T ss_pred             -hhhheeEEEeeecCCC-cEEEEeccCceEEeecC-CCCcc---e-EEeCC---------CCCCCCceEEEecCCCCCCc
Confidence             1234678899999999 99999999999998753 33321   1 11111         1223689999999942    


Q ss_pred             -CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          353 -RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       353 -~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                       ..+++.+. .++.+|.+.  ++.+..-+.-.-               +-.++.+-++|.++..|+.|+.+.+|..+  +
T Consensus       193 ~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F---------------dP~CisYf~NGEy~LiGGsdk~L~~fTR~--G  253 (1081)
T KOG1538|consen  193 NDILAVADWGQTLSFYQLS--GKQIGKDRALNF---------------DPCCISYFTNGEYILLGGSDKQLSLFTRD--G  253 (1081)
T ss_pred             cceEEEEeccceeEEEEec--ceeecccccCCC---------------CchhheeccCCcEEEEccCCCceEEEeec--C
Confidence             35556665 778888776  444331111100               01278889999999999999999999765  3


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      -.+-++.....+++.++..|++++++.|..||+|.-
T Consensus       254 vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  254 VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             eEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence            455666667788999999999999999999999876

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.8e-20  Score=160.46  Aligned_cols=258  Identities=16%  Similarity=0.215  Sum_probs=172.0

Q ss_pred             CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (513)
Q Consensus        47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~  126 (513)
                      |+|+|.|+-|..|.|||+.-...+..+ -.|-....... ....+-...-.+|+            ++|.++.|+.. ..
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~-~~LGs~~sk~~-~k~~k~~~~~~gHT------------davl~Ls~n~~-~~  256 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPC-VTLGSKASKKK-KKKGKRSNSASGHT------------DAVLALSWNRN-FR  256 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccc-eeechhhhhhh-hhhcccccccccch------------HHHHHHHhccc-cc
Confidence            679999999999999997532211000 00000000000 00000011234576            89999999742 34


Q ss_pred             ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (513)
                      +.|++||.|.+|++||+.++++..+.                                                      
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~------------------------------------------------------  282 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSI------------------------------------------------------  282 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceeh------------------------------------------------------
Confidence            58999999999999999999866542                                                      


Q ss_pred             eeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCe
Q 010287          207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  284 (513)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  284 (513)
                                            ..|.+.|.++.|+|. ...|++| .|+++.+.|.+........+        ...+.|
T Consensus       283 ----------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--------k~~g~V  332 (463)
T KOG0270|consen  283 ----------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--------KFDGEV  332 (463)
T ss_pred             ----------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--------Eeccce
Confidence                                  356678999999994 6778888 69999999999533322111        135779


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-EEEEe-CCe
Q 010287          285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMT  362 (513)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~~~-~~~  362 (513)
                      -.++|+|.....++++..||.++-+|+|+..   +++.+            ++.|.++|.++++++.-.. +++++ ++.
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt------------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWT------------LKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCC---CceeE------------EEeccCCcceEEecCCCCcceeeccccce
Confidence            9999999988899999999999999999864   22333            4556689999999986654 44554 599


Q ss_pred             EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCCCCcc
Q 010287          363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      |++|++.. ..+ .....|.-....+            .+.++.|+-. +|+.|+..+.++|||+.+....
T Consensus       398 Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  398 VKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence            99999974 222 2222222211111            1555666544 5678888889999999877443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=9.3e-20  Score=158.60  Aligned_cols=251  Identities=16%  Similarity=0.199  Sum_probs=184.3

Q ss_pred             ccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          229 HAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .-+..+|.+++|+|..  +++++| -.|.|-+||+.+.+....-+    ..+..|..+|.++.|+|.....+++.+.||+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence            5677889999999964  466667 48999999996433222110    1457799999999999998889999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      |++-|+..+...  .+...+..            ...+.++.|+.+...++.++. |...+||+++++.....+..|...
T Consensus       259 iR~~D~~~~i~e--~v~s~~~d------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  259 IRLQDFEGNISE--EVLSLDTD------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             eeeeeecchhhH--HHhhcCcc------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence            999999875431  12222111            146788889888888888877 999999999977777778777764


Q ss_pred             ccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCCCCcc---ceeecCCCCceeEEEEcCCCCceeeecC
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                                     |..++++|... +|+|++.|++.+|||++.-...   ....-.|..+|.+..|||++..|++-+.
T Consensus       325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence                           45899999765 6889999999999999864322   2445589999999999999999999999


Q ss_pred             CCeEEEecCCCCCccccCCcccccc----C--CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          461 SGVVRRVKGADNSALDANGNAFDFS----M--KLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       461 d~~i~~~~~~~~~~~~~~~~~~~~~----~--~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      |..|++..+............+.|.    .  .+...+|.|+..++++|. ...|-||+
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            9999995442111101111111222    2  245668999999999887 55566664

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=2.3e-20  Score=155.63  Aligned_cols=257  Identities=16%  Similarity=0.251  Sum_probs=181.7

Q ss_pred             cccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        33 ~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      .|......++|+-+    ..++|.|+.-|.|+|.|...++.                       ...+.+|.        
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG--------  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG--------  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence            46677788888764    45899999999999999877663                       36678888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|+.|.|+|.. .++++++|.|.+||+|++++..+..++..                                  
T Consensus       136 ----~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG----------------------------------  176 (385)
T KOG1034|consen  136 ----GSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGG----------------------------------  176 (385)
T ss_pred             ----ccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence                889999999854 36899999999999999999988776431                                  


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             ..+|.+.|.++.|+.++.+|+++ .|.+|++|++...+..-
T Consensus       177 ---------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~  217 (385)
T KOG1034|consen  177 ---------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN  217 (385)
T ss_pred             ---------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence                                                   36899999999999999999998 69999999998432110


Q ss_pred             ee---cc--cC-------------c--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccc---------
Q 010287          268 NI---VD--VK-------------P--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALC---------  317 (513)
Q Consensus       268 ~~---~~--~~-------------~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~---------  317 (513)
                      .+   +.  .+             |  .+-.-|...|-|+.|--   .++++=+-++.|..|..-. .+..         
T Consensus       218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccc
Confidence            00   00  00             0  01234666667777754   5788888899999998721 1110         


Q ss_pred             cccceeeccccCCCCccccccccccEEEEE--EeecCCEEEEEeC-CeEEEEEccCCCCCe--eeeeccccccccccccc
Q 010287          318 DTHSKLFEEQEAPGTRSFFTEIIASISDIK--FARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~  392 (513)
                      ...+..++-+            ...|+-+.  |.|-++.||.|.. |.|.+||++. .++.  .++..+..         
T Consensus       295 ~Ti~~~~~~~------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~---------  352 (385)
T KOG1034|consen  295 TTILGEFDYP------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKS---------  352 (385)
T ss_pred             eeeeeEeccC------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccc---------
Confidence            0001111111            13455554  4577899999887 9999999997 4332  12221111         


Q ss_pred             ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                          -..|...+|+.|+.+|+...+|+.|.-||..
T Consensus       353 ----~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  353 ----GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ----cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                1124488999999999999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.4e-20  Score=180.09  Aligned_cols=298  Identities=14%  Similarity=0.129  Sum_probs=202.5

Q ss_pred             CceeccCCCcc-ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE----EEEE
Q 010287          176 PKSYMANGGCG-ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET----FISA  250 (513)
Q Consensus       176 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~  250 (513)
                      .++|+|++..+ .........|..|  +.+.++.+|.++............  ........+.++|.+.+..    |+.|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sf--st~~slEifeld~~~~~~dlk~~~--s~~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASF--STSASLEIFELDFSDESSDLKPVG--SLQSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhcccccc--ccccccceeeecccCccccccccc--cccccccceeeeecccCCCccceeecc
Confidence            55788887422 1111111222223  445666666664433321111111  1123355789999887665    6666


Q ss_pred             -cCCeEEEEEcCCC--cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          251 -DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       251 -~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                       +||.|.+||...-  .....++    .....|.+.|..+.|++..++++|+|+.||.|.|||+.+.+..    ..+...
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP----~~~~~~  158 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP----FTPGSQ  158 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC----CCCCCC
Confidence             7999999998752  2222221    2557899999999999998789999999999999999874432    111111


Q ss_pred             cCCCCccccccccccEEEEEEeec-CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          328 EAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      .          ..+.|.+++|+.. .+.|++++. |.+.|||++. .+++-.+..+....             .+..++|
T Consensus       159 ~----------~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~-------------~~S~l~W  214 (1049)
T KOG0307|consen  159 A----------PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRM-------------HCSVLAW  214 (1049)
T ss_pred             C----------CcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCcc-------------ceeeeee
Confidence            1          1257999999985 456666776 8999999996 56666665554321             1347999


Q ss_pred             eCCCC-EEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEEecCCCCCccccCCc
Q 010287          406 SGDGG-RVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGN  480 (513)
Q Consensus       406 s~~~~-~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~  480 (513)
                      +|+.- .|++++.|   -.|.+||++......+++++|...+.++.|++.+ .+|++++.|+.|..   |.....+....
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~---wN~~tgEvl~~  291 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC---WNPNTGEVLGE  291 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE---ecCCCceEeee
Confidence            99874 45666654   3699999998767778889999999999999887 88999999999999   55554444444


Q ss_pred             cccccCCeeEEEEeCCCC-EEEEEc-CCcEEEEe
Q 010287          481 AFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY  512 (513)
Q Consensus       481 ~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~  512 (513)
                      .-.-...+..+.|+|... .+|+++ ++.|-||+
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            334467799999999987 666666 77777775

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=4.7e-19  Score=151.39  Aligned_cols=293  Identities=18%  Similarity=0.307  Sum_probs=194.2

Q ss_pred             cccceeccccccccccccccEEEEEEcC-----CCCEEEee---cCCCcEEEEEee-CCCCCCCccCccccccccccCCC
Q 010287           18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATG---DRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHP   88 (513)
Q Consensus        18 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~latg---~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (513)
                      ++..+||+..+.+..-..=.|+-+.|..     +.++||.-   +..|...+.=+. +++.           +       
T Consensus        10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~-----------d-------   71 (472)
T KOG0303|consen   10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRM-----------D-------   71 (472)
T ss_pred             hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeeccccccccc-----------C-------
Confidence            4567788887766666666788888764     24555532   122222222211 1110           0       


Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                        .-+-.+.||+            ++|..++|+|.+| ..+++||.|.+|.||++-.+.+.....               
T Consensus        72 --~~~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt---------------  121 (472)
T KOG0303|consen   72 --ASYPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT---------------  121 (472)
T ss_pred             --CCCCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc---------------
Confidence              0112367898            9999999999655 689999999999999997654322111               


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETF  247 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l  247 (513)
                                                                            .....+.+|...|--++|+|. .+.|
T Consensus       122 ------------------------------------------------------epvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen  122 ------------------------------------------------------EPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             ------------------------------------------------------cceEEEeecceeEEEEeecccchhhH
Confidence                                                                  011236799999999999996 4556


Q ss_pred             EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          248 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       248 ~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      +++ .|.+|.+|++.++...++        +. |.+-|.++.|+.+| .+|++.+.|..|+|||.+++......    ..
T Consensus       148 lsag~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~  213 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VA  213 (472)
T ss_pred             hhccCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----cc
Confidence            666 799999999999887764        33 99999999999999 99999999999999999998874331    22


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEEE----eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                      ++.           ..-..+.|-.+|.++.+|    ++..+-+||..+-.+++.........              +|.-
T Consensus       214 heG-----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--------------Gvl~  268 (472)
T KOG0303|consen  214 HEG-----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--------------GVLL  268 (472)
T ss_pred             ccC-----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--------------ceEE
Confidence            221           123445677788866565    34889999987644554332222211              1223


Q ss_pred             EEEeCCCCEEEE-EeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCC
Q 010287          403 CCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPS  451 (513)
Q Consensus       403 ~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~  451 (513)
                      --|.+|.++++. |-.|+.|+.|.+.....-+..+.  ....|-+.+.+-|.
T Consensus       269 PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  269 PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             eeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            456788888775 44799999999987643343333  23445556666554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=6.5e-19  Score=152.89  Aligned_cols=198  Identities=17%  Similarity=0.273  Sum_probs=149.7

Q ss_pred             eccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      ..+|++.|..++|+.. ...|++| .|.+|++||+.+++...        .+..|...|.+++|+|..+..|++|+.|++
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~  310 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGT  310 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccce
Confidence            3589999999999886 4566777 69999999999887543        456789999999999999999999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      |.+.|+|.....   -..|+.             .+.|-.++|.|... .++++.+ |+|+-+|++..++++.+++.|..
T Consensus       311 V~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~  374 (463)
T KOG0270|consen  311 VALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD  374 (463)
T ss_pred             EEeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence            999999953221   122222             15799999999654 4445555 99999999998899999999998


Q ss_pred             cccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCC---CceeEEEEcCCCC-ceeee
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLG  458 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~  458 (513)
                      .+               .++++++.- .+|+|++.|+.|++|++......  ....|.   +...+.++.|+-. ++|.|
T Consensus       375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~G  437 (463)
T KOG0270|consen  375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFG  437 (463)
T ss_pred             Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEec
Confidence            74               478888754 46789999999999998754322  112222   1244556666655 56788


Q ss_pred             cCCCeEEE
Q 010287          459 SLSGVVRR  466 (513)
Q Consensus       459 ~~d~~i~~  466 (513)
                      +..+.+++
T Consensus       438 G~k~~~~v  445 (463)
T KOG0270|consen  438 GEKAVLRV  445 (463)
T ss_pred             CccceEEE
Confidence            88887887

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=6.6e-19  Score=144.37  Aligned_cols=277  Identities=13%  Similarity=0.156  Sum_probs=185.6

Q ss_pred             CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-c---C----CeEEEEEcCCCcceeeecccC
Q 010287          203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-D---D----LRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~---d----~~i~vwd~~~~~~~~~~~~~~  273 (513)
                      .++.+.+.++.........    ..+..|.+.|+.++-+|- .+.|+++ .   |    ..+-||.+.......+.....
T Consensus        38 ~dNqVhll~~d~e~s~l~s----kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE  113 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLS----KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE  113 (370)
T ss_pred             CcceeEEEEecCccchhhh----hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence            3456666666554432221    124567889999999995 5556655 2   2    346799887543321110000


Q ss_pred             c-cccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287          274 P-ANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-  350 (513)
Q Consensus       274 ~-~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-  350 (513)
                      . ..+. .+-+.|.|+.|.|++ ..+++- .|..|.+|++..+.....   .+....       -.++....++-+|+| 
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns-~klasm-~dn~i~l~~l~ess~~va---ev~ss~-------s~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNS-DKLASM-DDNNIVLWSLDESSKIVA---EVLSSE-------SAEMRHSFTSGAWSPH  181 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCC-CeeEEe-ccCceEEEEcccCcchhe---eecccc-------cccccceecccccCCC
Confidence            0 1222 344689999999998 666654 489999999987765221   111111       122445688889999 


Q ss_pred             -cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCC
Q 010287          351 -NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       351 -~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  428 (513)
                       ++..+++.+++++..||+++..+....-..|...               |..+.|+|+.+ +|++|++||.|++||.+.
T Consensus       182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             CccceEEEeCCCcEEEEEccchhhhcchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence             8899999999999999999733333334455544               34899999876 577999999999999998


Q ss_pred             CCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEE-----ec-------CCCC--------------CccccCCcc
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRR-----VK-------GADN--------------SALDANGNA  481 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~-----~~-------~~~~--------------~~~~~~~~~  481 (513)
                      .+..+..+.+|.-.|.++.|.|.. +++++|+.|..|.+     ..       +.+.              ...-+....
T Consensus       247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence            877889999999999999999875 57789999999988     10       0000              000111233


Q ss_pred             ccccCCeeEEEEeCCCCEEE-EEc-CCcEEE
Q 010287          482 FDFSMKLLHLAWHPSENSIA-CAA-SNSLYM  510 (513)
Q Consensus       482 ~~~~~~i~~~~~sp~~~~la-~~~-~~~~~i  510 (513)
                      -+|...|++++||.-..++. +-+ ++.++|
T Consensus       327 dehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            36899999999999998865 555 555554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2e-18  Score=138.06  Aligned_cols=299  Identities=14%  Similarity=0.138  Sum_probs=189.4

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..|.+-+++|.+++|+.|+.+|.|.+..+......             ....|.......+++|+            .+|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi   65 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI   65 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence            35666789999999999999999999997643321             01111222333458888            999


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      +.++|.    +.+|++++ ||.|+=|..+.......                                            
T Consensus        66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~--------------------------------------------   96 (325)
T KOG0649|consen   66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA--------------------------------------------   96 (325)
T ss_pred             eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence            999994    23566554 59999998875432100                                            


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-EcCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                .-++|.+.....        .- ...-..|+++...|..+-++. |.|+.++-||+++++...       
T Consensus        97 ----------~K~lwe~~~P~~--------~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-------  150 (325)
T KOG0649|consen   97 ----------TKRLWEVKIPMQ--------VD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-------  150 (325)
T ss_pred             ----------chhhhhhcCccc--------cC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-------
Confidence                      001121111000        00 011134888988986555555 589999999999876543       


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc-cccEEEEEEeecCC
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI-IASISDIKFARNGR  353 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~  353 (513)
                       .+++|++.|.++.--... ..+++|++||++|+||+++++.    +.+++....+..   +..| ..+|.+++.  +..
T Consensus       151 -~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~---lRp~~g~wigala~--~ed  219 (325)
T KOG0649|consen  151 -EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNL---LRPDWGKWIGALAV--NED  219 (325)
T ss_pred             -EEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccce----eEEeccccChhh---cCcccCceeEEEec--cCc
Confidence             679999999999984444 5799999999999999999875    444443332211   2222 245666665  466


Q ss_pred             EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287          354 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES  433 (513)
Q Consensus       354 ~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  433 (513)
                      +++.|....+.+|+++. .++...+......                -.+.|..|  .+++++..+.+.-|.+..  .+.
T Consensus       220 WlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~~d--~vl~~G~g~~v~~~~l~G--vl~  278 (325)
T KOG0649|consen  220 WLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFVDD--CVLIGGEGNHVQSYTLNG--VLQ  278 (325)
T ss_pred             eEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeeecc--eEEEeccccceeeeeecc--EEE
Confidence            99998888999999997 7777776654432                25666544  677788888999998762  332


Q ss_pred             eeecCCCCceeEEEEcC-CCCceeeecCCCeEEE
Q 010287          434 TTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR  466 (513)
Q Consensus       434 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~  466 (513)
                      ..............++. ..++|-.++....+.+
T Consensus       279 a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  279 ANIPVESTACYSASWQTSPIKFISIAGFSNKLHI  312 (325)
T ss_pred             EeccCCccceeeecccCCceEEEEecccceeeee
Confidence            22222222223333322 2455555566666655

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=6.4e-19  Score=144.46  Aligned_cols=275  Identities=16%  Similarity=0.197  Sum_probs=178.4

Q ss_pred             ccccccccccEEEEEEcCC-CCEEEeecCC-------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287           28 AGEEVQEVDIISAIEFDKS-GDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (513)
Q Consensus        28 ~~~~~~h~~~V~~v~~sp~-g~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   99 (513)
                      ...+..|.+.|..++-+|- .++|+|...+       ..+.||.+......                           ..
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~---------------------------S~  108 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ---------------------------SN  108 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc---------------------------cc
Confidence            3356678999999999996 4566665432       23789997544321                           00


Q ss_pred             CCccccccccc--ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287          100 EPEFDYLKSLE--IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (513)
Q Consensus       100 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (513)
                      ...++.+..|+  +-+.|.|+.|.|  ++..+++-. |..|.+|+++.+..+ ...+....                   
T Consensus       109 ~~tlE~v~~Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~-vaev~ss~-------------------  165 (370)
T KOG1007|consen  109 SSTLECVASLDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSE-------------------  165 (370)
T ss_pred             cchhhHhhcCCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcch-heeecccc-------------------
Confidence            00011122221  226899999988  555676655 888999999887532 11111000                   


Q ss_pred             eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEEcCCeE
Q 010287          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISADDLRI  255 (513)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~d~~i  255 (513)
                                                                        ...|....++-+|+|  +++.+++.+|+++
T Consensus       166 --------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl  195 (370)
T KOG1007|consen  166 --------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTL  195 (370)
T ss_pred             --------------------------------------------------cccccceecccccCCCCccceEEEeCCCcE
Confidence                                                              012445567788998  7889999999999


Q ss_pred             EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      ..||+++..+...+       -..|...|..+.|+|+.+.+|++|+.||.|++||.|..+..   +..            
T Consensus       196 ~~~D~RT~~~~~sI-------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~e------------  253 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSI-------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQE------------  253 (370)
T ss_pred             EEEEccchhhhcch-------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccc------------
Confidence            99999987766543       25688899999999998889999999999999999875432   222            


Q ss_pred             cccccccEEEEEEee-cCCEEEEE-eCCeEEEEEccCCCCCeee--------eeccccc--cccccc-----c-cccCCc
Q 010287          336 FTEIIASISDIKFAR-NGRHILSR-DYMTLKLWDINMDSGPVAT--------FQVHEHL--RPKLCD-----L-YENDSI  397 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp-~~~~l~~~-~~~~v~iwd~~~~~~~~~~--------~~~~~~~--~~~~~~-----~-~~~~~~  397 (513)
                      +.+|.-+|+++.|+| ..++|++| +|..|.+|....-....+.        ...+...  ...+.+     + .+.+  
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED--  331 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED--  331 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc--
Confidence            456778999999999 45677775 4689999986531100000        0000000  000110     0 1122  


Q ss_pred             cceeeEEEeCCCCE-EEEEeCCCcEEEEecC
Q 010287          398 FDKFECCLSGDGGR-VATGSYSNLFRVFGCS  427 (513)
Q Consensus       398 ~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~  427 (513)
                       .|++++||.-..+ +|+-+.||.+.|=++.
T Consensus       332 -SVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  332 -SVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             -ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence             3569999987776 5577899999886654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6e-19  Score=146.40  Aligned_cols=238  Identities=11%  Similarity=0.132  Sum_probs=164.6

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      ..|+.|++.|.+|++| .+|.|.+||+.+....        ..+.+|..+|++++|+++| +.|++++.|..|.+||+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------RMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--------hhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccC
Confidence            6799999999999999 8999999999876522        2568899999999999999 9999999999999999999


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCCCeeee-eccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCD  390 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~  390 (513)
                      |....    .+.-.             ++|+.+.|+|..+  .+++--+..-.+-++..   +.+.+ .......  +. 
T Consensus        97 gs~l~----rirf~-------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~d--ln-  153 (405)
T KOG1273|consen   97 GSPLK----RIRFD-------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGD--LN-  153 (405)
T ss_pred             CCcee----EEEcc-------------CccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccc--cc-
Confidence            88532    22211             6799999999443  33332222233334331   22221 1111110  00 


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKG  469 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~~~  469 (513)
                          -.   .....|.+.|+++++|...|.+.++|..+. +....++... ..|.++.++..|+.|+....|+.||.++.
T Consensus       154 ----~s---as~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  154 ----SS---ASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             ----cc---cccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence                00   013358899999999999999999999987 3335555444 78889999999999999999999999444


Q ss_pred             CCCCcc--ccCCc-cccc-----cCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287          470 ADNSAL--DANGN-AFDF-----SMKLLHLAWHPSENSIACAA--SNSLYMYY  512 (513)
Q Consensus       470 ~~~~~~--~~~~~-~~~~-----~~~i~~~~~sp~~~~la~~~--~~~~~i~~  512 (513)
                      .++...  ..... ....     ...=.++.||.||.+++.++  ...++||-
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            433210  00000 0001     12336788999999998665  66788873

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=6.4e-19  Score=142.62  Aligned_cols=301  Identities=11%  Similarity=0.127  Sum_probs=193.5

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~  110 (513)
                      .+|...|+|+.|..++. |.+|..-|.|.+|++++....                       ..+. .|.          
T Consensus        11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~----------   56 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR----------   56 (323)
T ss_pred             ccccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc----------
Confidence            37899999999998775 899999999999999876642                       2233 223          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|+.+.-.|  + ..+.+-+.|+.+.+|++..+....+..+......+.             ..++.+.++..    
T Consensus        57 --~~it~lq~~p--~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC-------------rfSl~~~~k~~----  114 (323)
T KOG0322|consen   57 --LFITNLQSIP--N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC-------------RFSLVKKPKNS----  114 (323)
T ss_pred             --ceeeceeecC--C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc-------------cceeccCCCcc----
Confidence              5677777755  2 578899999999999999876555444322211000             11122222211    


Q ss_pred             CCCCCCCCcCCCCCC-ceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCE--EEEE-cCCeEEEEEcCCCcc
Q 010287          191 GCASNDSSFPPGGVS-SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGET--FISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~--l~s~-~d~~i~vwd~~~~~~  265 (513)
                          ..+.+.++... .+++-|............   ...+..+.+.|..+.. ++.+  +++| .+|.+.+||+.++..
T Consensus       115 ----eqll~yp~rgsde~h~~D~g~~tqv~i~dd---~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~  187 (323)
T KOG0322|consen  115 ----EQLLEYPSRGSDETHKQDGGDTTQVQIADD---SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK  187 (323)
T ss_pred             ----hhheecCCcccchhhhhccCccceeEccCc---hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence                00001111100 011111111000000000   0123446677777543 3333  3346 699999999998755


Q ss_pred             eeeecccCc--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc--ccccccceeeccccCCCCccccccccc
Q 010287          266 SFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       266 ~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      .+.+....+  .....|..+|.++.+.+.- ..=++++.+..+..|.+...  .+.......++.              .
T Consensus       188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn--------------p  252 (323)
T KOG0322|consen  188 IIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN--------------P  252 (323)
T ss_pred             eeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC--------------C
Confidence            544322211  2346789999999998765 55577888888889987643  221111111111              3


Q ss_pred             cEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          342 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      .|..+.+-||++.+++++ |+.|+||..++ ..++..++.|...               |.+++|+|+.+.+|+++.|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag---------------vn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG---------------VNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc---------------eeEEEeCCCCchhhhccCCce
Confidence            588899999999999976 59999999997 9999999999876               459999999999999999999


Q ss_pred             EEEEec
Q 010287          421 FRVFGC  426 (513)
Q Consensus       421 i~vwd~  426 (513)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-19  Score=157.56  Aligned_cols=220  Identities=14%  Similarity=0.230  Sum_probs=170.8

Q ss_pred             EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      .|++......|+++|+..+.|+|||+....                       +.+.+.+|.            +.|+++
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------------~hr~lkdh~------------stvt~v  127 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------------IHRFLKDHQ------------STVTYV  127 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHH-----------------------HhhhccCCc------------ceeEEE
Confidence            344443444899999999999999987332                       335678888            899999


Q ss_pred             EEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (513)
Q Consensus       119 ~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  198 (513)
                      .|  +..+.+|++++..|.|.|..+.++.....+..                                            
T Consensus       128 ~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--------------------------------------------  161 (673)
T KOG4378|consen  128 DY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--------------------------------------------  161 (673)
T ss_pred             Ee--cCCcceeEEeccCCcEEEEecccCccccceec--------------------------------------------
Confidence            99  45678999999999999999988753322111                                            


Q ss_pred             cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccc
Q 010287          199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN  276 (513)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~  276 (513)
                                                     +....|+-+.|++..+.+++.  ++|.|.+||.......+.       .
T Consensus       162 -------------------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------~  203 (673)
T KOG4378|consen  162 -------------------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------A  203 (673)
T ss_pred             -------------------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------h
Confidence                                           112336678899988777764  799999999985554433       4


Q ss_pred             cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287          277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  356 (513)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~  356 (513)
                      ...|..+...++|+|..+.+|++.+.|..|.+||.+.........  +               ..+...++|+++|.+|+
T Consensus       204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y---------------~~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--Y---------------SHPLSTVAFSECGTYLC  266 (673)
T ss_pred             hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--e---------------cCCcceeeecCCceEEE
Confidence            567999999999999988999999999999999998765433211  1               14689999999999999


Q ss_pred             EEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      +|+. |.|..||++....++..+..|...               |++++|-|..
T Consensus       267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeeecc
Confidence            9987 999999999878889999888876               4578887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=8.3e-19  Score=149.78  Aligned_cols=305  Identities=14%  Similarity=0.119  Sum_probs=205.5

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +.+.+.+|.            +.|++|.|  +.++..|++|+.|..+++|+++..-...+                    
T Consensus        48 ~qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------------   93 (609)
T KOG4227|consen   48 CQKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT--------------------   93 (609)
T ss_pred             hhhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC--------------------
Confidence            345566777            99999999  56789999999999999999976421111                    


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                       .+++...-..|...|.|++|....+.+++| 
T Consensus        94 -------------------------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   94 -------------------------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             -------------------------------------------------CCCceeccCccccceEEEEEccCCeeEecCC
Confidence                                                             001111124566889999999999999999 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .+++|.+.|+++.+.+...      .-....+.|+.+..+|.. +.|++.+.++.|.+||.+.......   .+-..+  
T Consensus       125 ~~~~VI~HDiEt~qsi~V~------~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN--  192 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVA------NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS---LVLPAN--  192 (609)
T ss_pred             CcceeEeeecccceeeeee------cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc---eeeecC--
Confidence            7999999999976654321      112234589999999997 9999999999999999987652211   111111  


Q ss_pred             CCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          331 GTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                              .......+-|+|-. .+|++.+. +.+.+||++.+..++....+.......      +..   -+.+.|+|.
T Consensus       193 --------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~------~~~---~M~~~~~~~  255 (609)
T KOG4227|consen  193 --------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE------NTE---WMGSLWSPS  255 (609)
T ss_pred             --------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc------chh---hhheeeCCC
Confidence                    12457888999955 56666666 889999999755555444333222110      000   136889999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeecCC------CCceeEEEEcCCCCceeeecCCCeEEEecCCCCC------ccc
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------ALD  476 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------~~~  476 (513)
                      |+.+++--....-.+||+-+..+.+......      ...+.+++|..+.. +++|+.+-.|.+   |++.      ++.
T Consensus       256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~---WklP~~~ds~G~~  331 (609)
T KOG4227|consen  256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI---WKLPRANDSYGFT  331 (609)
T ss_pred             CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEE---EecCCCccccCcc
Confidence            9998877766666778887542322222211      12355677766554 899999988887   2111      000


Q ss_pred             --------------c---CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          477 --------------A---NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       477 --------------~---~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                                    +   ...+.+|.+.++++.|+|...+|++.+ .+.++||+
T Consensus       332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence                          0   112336888999999999999998655 88899986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=8.1e-20  Score=170.26  Aligned_cols=277  Identities=15%  Similarity=0.210  Sum_probs=207.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|..+|.|+.|...|.+|++|+.|..++||..++...                       .....||.         
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------lAs~rGhs---------  232 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------LASCRGHS---------  232 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------hccCCCCc---------
Confidence            4678999999999999999999999999999999877664                       36688999         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|+.++.  +.++.++++++.|..|++|.+..+..+.+                                      
T Consensus       233 ---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv--------------------------------------  269 (1113)
T KOG0644|consen  233 ---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV--------------------------------------  269 (1113)
T ss_pred             ---cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH--------------------------------------
Confidence               88999998  45667889999999999999988764332                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                                            +.+|++.|++++|+|-.   .++.||++++||.+-   ...+
T Consensus       270 --------------------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~---~~~~  305 (1113)
T KOG0644|consen  270 --------------------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL---EPRI  305 (1113)
T ss_pred             --------------------------------------HhccccceeeeccCccc---cCCCCCceEeccccc---cccc
Confidence                                                  47999999999999965   344899999999871   1111


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      +-.+|..+.+ ...+.++.|-..+ .-+++++.|+.-..|.+......                      ...+.-+..+
T Consensus       306 y~prp~~~~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~----------------------~~~lif~t~s  361 (1113)
T KOG0644|consen  306 YVPRPLKFTE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWR----------------------SNLLIFVTRS  361 (1113)
T ss_pred             cCCCCCCccc-ccceeeeeccccc-cccccccCCcccccchhhHhhhh----------------------ccceEEEecc
Confidence            2223333333 3556777787777 78999999999888876432210                      0112222222


Q ss_pred             ecC-CEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEec
Q 010287          350 RNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGC  426 (513)
Q Consensus       350 p~~-~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~  426 (513)
                      .+. .+.+++ .+-.+.+|++.. +...+.+.+|...               ++.+.++|-+. ..++++.||...|||+
T Consensus       362 sd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~---------------~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  362 SDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDE---------------VYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             ccccccceeeeeeeEeeeeeccc-chhhhhhcccccc---------------eeeeeecCCCcHhhhhccCCCceEeeec
Confidence            222 333343 347889999986 8888888888776               34789999655 4558999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      -.+.++.....+|. .+....|+++|..++....-|.+.|
T Consensus       426 ~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  426 WEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             ccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEE
Confidence            98876665555644 4557899999999999888888888

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=153.85  Aligned_cols=205  Identities=17%  Similarity=0.246  Sum_probs=160.3

Q ss_pred             EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      ++++++||.+.+.+-. ++ .-       ..+..|.+.+.+-.|+|+| .-|+++++||.|++|. ++|-+...      
T Consensus        78 ~~i~s~DGkf~il~k~-~r-VE-------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRSt------  140 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKS-AR-VE-------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRST------  140 (737)
T ss_pred             EEEEcCCceEEEeccc-ch-hh-------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHH------
Confidence            3344489998888754 22 21       2567899999999999999 8899999999999998 55543111      


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                                +.....+|.|++|.|+...++-+..+.+.|=.+.. ...+-..+.|.+.               |.++.|
T Consensus       141 ----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~W  194 (737)
T KOG1524|consen  141 ----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLSW  194 (737)
T ss_pred             ----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEeec
Confidence                      11112579999999999888887778888888886 5566678889887               569999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS  485 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  485 (513)
                      ++.++.+++|+.|-..++||..  +..+..-..|..++++++|.|+ +.++.++. .+.|+   ..+.           .
T Consensus       195 ~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~-----------~  256 (737)
T KOG1524|consen  195 STQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR-----------V  256 (737)
T ss_pred             CccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------c
Confidence            9999999999999999999977  3555677789999999999999 66677653 34455   2222           6


Q ss_pred             CCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          486 MKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      +.|..++|||||..+++|+..+..++
T Consensus       257 GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cceEEEEEcCCCceeeccccCceEEE
Confidence            88999999999999999997776664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=8.3e-18  Score=161.02  Aligned_cols=311  Identities=14%  Similarity=0.230  Sum_probs=203.3

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  116 (513)
                      +-..+.|+|-...+++++..-.|+|||.+.++..                       ..|..+.+         ....|+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence            4567889998889999987779999999877642                       12222221         116799


Q ss_pred             eEEEeecCCCceEEEeecCCeEEEEEccCc---eeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .+++....|..++++|+.||.||||+--..   +.+.+.....-.+      ........+-.+.|-.....+       
T Consensus      1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~------~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD------QLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred             eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccc------cCccCCCCCeeeehhhhCCeE-------
Confidence            999987777889999999999999974322   1111111110000      000000111122333332322       


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                           +.++.-..|++||.........      ...+....|+++.-+. .|+.+++| .||.|++||.+......-+  
T Consensus      1181 -----l~tGd~r~IRIWDa~~E~~~~d------iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-- 1247 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWDAHKEQVVAD------IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-- 1247 (1387)
T ss_pred             -----EecCCeeEEEEEecccceeEee------cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc--
Confidence                 4555678999999865433211      1123445566665543 47899999 8999999999865542111  


Q ss_pred             cCccccccccCC--eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          272 VKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       272 ~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                         ...+.|+..  |..+.+.+.|-..|++|+.||.|++||+|.... .. ......+..         ..+.++++..+
T Consensus      1248 ---~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~~---------yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1248 ---CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHWE---------YGSALTALTVH 1313 (1387)
T ss_pred             ---eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeeccc---------cCccceeeeec
Confidence               134567766  999999998755699999999999999998522 11 111111110         11358999999


Q ss_pred             ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      ++...+++|+.+.|+||++.  ++.+..++.+....        ...+-.+.+++|+|..-.+++|+.|..|.||.....
T Consensus      1314 ~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99999999988999999997  66666665443321        133334569999999999999999999999987744

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=2.9e-17  Score=154.51  Aligned_cols=288  Identities=15%  Similarity=0.180  Sum_probs=184.9

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (513)
                      ....|++...   ..+..-..-...|+|++|+|. ..+||.|.++|+|.+||+..+...                 +...
T Consensus       223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~  282 (555)
T KOG1587|consen  223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG  282 (555)
T ss_pred             eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence            5667877653   112122233689999999996 778999999999999998766542                 0111


Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeee-eccccCCCcccCCCCcccC
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (513)
                      .......|.            .+++.+.|..+..+.-|++++.||.|..|+++.-..... .......            
T Consensus       283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------  338 (555)
T KOG1587|consen  283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------  338 (555)
T ss_pred             cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------
Confidence            122234555            899999998766656799999999999997765332110 0000000            


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFIS  249 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s  249 (513)
                                                           +              ...  -......+++++|.+ +...|+.
T Consensus       339 -------------------------------------~--------------~~~--~~~~~~~~t~~~F~~~~p~~FiV  365 (555)
T KOG1587|consen  339 -------------------------------------H--------------KGQ--QSSKAVGATSLKFEPTDPNHFIV  365 (555)
T ss_pred             -------------------------------------c--------------ccc--ccccccceeeEeeccCCCceEEE
Confidence                                                 0              000  001123478899987 4556777


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      | ++|.|..-+........... .++ .....|.++|+++.++|-+...|++++ |.++++|......   .++..+   
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~-~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~---  437 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVS-YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSL---  437 (555)
T ss_pred             EcCCcEEEEEeccCCccccccc-ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---Ccchhh---
Confidence            7 89988874443222222100 111 245678899999999999966677666 9999999865211   112222   


Q ss_pred             cCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEE
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                               ..+...+++++|||-.. .+++++. |.+.+||+... ..++.+.......               .+.+.
T Consensus       438 ---------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~---------------l~~~~  493 (555)
T KOG1587|consen  438 ---------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA---------------LTRVR  493 (555)
T ss_pred             ---------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccc---------------cceee
Confidence                     22335699999999654 5555664 99999999742 2334433333221               23788


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      |+++|+.|++|...|.+++|++...
T Consensus       494 ~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  494 WSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cCCCCcEEEEecCCCcEEEEEcCch
Confidence            9999999999999999999999643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-18  Score=155.79  Aligned_cols=273  Identities=15%  Similarity=0.173  Sum_probs=186.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ....|.+.|++++|+|....|++++.||.|.+|+++.....               ..-..+...+|.+|.         
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc---------
Confidence            45578999999999999999999999999999998432210               011344556788999         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ++|.|++.  ..++..+++|+.||+|+.|++.... -.                               +..+    
T Consensus       345 ---gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp-------------------------------~ds~----  383 (577)
T KOG0642|consen  345 ---GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DP-------------------------------DDSY----  383 (577)
T ss_pred             ---CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Cc-------------------------------cccc----
Confidence               99999999  4588899999999999999886321 00                               0000    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                           |         .......+.||.+.|+.+++++....|+++ .||++++|+......+  
T Consensus       384 ---------------------d---------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~--  431 (577)
T KOG0642|consen  384 ---------------------D---------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC--  431 (577)
T ss_pred             ---------------------C---------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc--
Confidence                                 0         000111257999999999999998889998 7999999998754431  


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      ++     ..........++.+-...+...++...-+.-.++++.....    +..++....+.+.     -...+..+.+
T Consensus       432 ~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~-----~~~~in~vVs  497 (577)
T KOG0642|consen  432 TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPR-----RYPQINKVVS  497 (577)
T ss_pred             cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCccc-----ccCccceEEe
Confidence            11     11111233455555444322233222233333333333222    3334332222111     1135777888


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|.+.+.+++.+ +.|+++|..+ ++++.....|...               ++++++.|+|.+|++++.|+.+++|.+.
T Consensus       498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s---------------vtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS---------------VTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             cCCCCeeEecccCCceecccccc-cccchheeeccce---------------ecceeecCCCceEEeecCCceeehhhcc
Confidence            998888888775 9999999997 8999888888765               4599999999999999999999999987


Q ss_pred             CC
Q 010287          428 EG  429 (513)
Q Consensus       428 ~~  429 (513)
                      ..
T Consensus       562 ~k  563 (577)
T KOG0642|consen  562 VK  563 (577)
T ss_pred             ch
Confidence            54

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=7.2e-17  Score=151.88  Aligned_cols=260  Identities=13%  Similarity=0.172  Sum_probs=178.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|+|... .+++.|+.+|.|.+||++.+.......+                                      
T Consensus       243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~l--------------------------------------  283 (555)
T KOG1587|consen  243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGL--------------------------------------  283 (555)
T ss_pred             CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCccc--------------------------------------
Confidence            7799999998543 5888899999999999988753211000                                      


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                      ......|..++..+.|..+.  .-|+++ .||.|..|+++.-......
T Consensus       284 --------------------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~  331 (555)
T KOG1587|consen  284 --------------------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG  331 (555)
T ss_pred             --------------------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence                                            00135788889999997643  337776 7999999988744332222


Q ss_pred             cccCccc----cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          270 VDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       270 ~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ....+..    -......+++++|.+..++.|+.|+++|.|..-+........  ...++++      ..+..|.++|++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~------~~~~~h~g~v~~  403 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH------STFITHIGPVYA  403 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--ccccccc------ccccccCcceEe
Confidence            1111100    012235689999999998999999999999874422222111  1222222      124667899999


Q ss_pred             EEEeecCC-EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEE
Q 010287          346 IKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRV  423 (513)
Q Consensus       346 i~~sp~~~-~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v  423 (513)
                      +.++|=+. .+.++.|.+++||.......++..+..+...               +++++|||-.. .++++..||.|.+
T Consensus       404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             eecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCceeh
Confidence            99999654 4445668999999987335666555544443               56999999775 5667788999999


Q ss_pred             EecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          424 FGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ||+....... .+.+........+.+++.|+.|+.|...|.+.+
T Consensus       469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~  512 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI  512 (555)
T ss_pred             hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence            9997653332 444444566677888999999999999999988

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=3.1e-15  Score=144.74  Aligned_cols=328  Identities=22%  Similarity=0.363  Sum_probs=218.9

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|...|.++.|.+.+..++.++.|+.+.+|+......                      ....+.++..         
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~---------  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD---------  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence            457899999999999999999999999999999765541                      1122333220         


Q ss_pred             ccccceeEEEeecCCCc-eEEEeec-CCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~-~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                        ..+..+.+. ..++. .++..+. |+.+++|+... .....                                     
T Consensus       110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------------------------------------  149 (466)
T COG2319         110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIR-------------------------------------  149 (466)
T ss_pred             --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEE-------------------------------------
Confidence              246666664 44555 4444444 99999999987 22111                                     


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~  265 (513)
                                                             ....|...|.+++|+|+++.++++ . ++.+++|+......
T Consensus       150 ---------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         150 ---------------------------------------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             ---------------------------------------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence                                                   135777889999999999988887 4 99999999986333


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ..        .+.+|...+.+++|+|++...+++++.|+.|++||...+.....   .+            .+|.... .
T Consensus       191 ~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~---~~------------~~~~~~~-~  246 (466)
T COG2319         191 LS--------TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS---TL------------SGHSDSV-V  246 (466)
T ss_pred             EE--------eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee---ec------------CCCCcce-e
Confidence            32        34568999999999999832566669999999998875443210   22            2333443 2


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      ..|+|++.++++++. +.+++|++......+..+..|...               +..+.|+|++..+++++.|+.+.+|
T Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---------------VLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---------------EEEEEECCCCCEEEEeeCCCcEEEE
Confidence            389999988877664 999999998633323333333222               4478999999998889888999999


Q ss_pred             ecCCCCccceee-cCCCCceeEEEEcCCCCceeee-cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE
Q 010287          425 GCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC  502 (513)
Q Consensus       425 d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~  502 (513)
                      +..+........ ..|...+..+.+.+++..++.+ ..|+.+.+   +...... ..........+..+.+++ ...+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  386 (466)
T COG2319         312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL---WDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVS  386 (466)
T ss_pred             EcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEe---eecCCCc-eeEEecCCceEEEEEECC-CCCEEE
Confidence            888763332222 3677778888884332455555 67777776   2222111 111111122288999999 533333


Q ss_pred             --EcCCcEEEEe
Q 010287          503 --AASNSLYMYY  512 (513)
Q Consensus       503 --~~~~~~~i~~  512 (513)
                        ..+..+.+|.
T Consensus       387 ~~~~~~~~~~~~  398 (466)
T COG2319         387 SGSTDGTVRLWD  398 (466)
T ss_pred             EecCCCceEEEe
Confidence              3466777774

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=2.5e-17  Score=150.23  Aligned_cols=268  Identities=12%  Similarity=0.168  Sum_probs=192.0

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|+.++|-|  ||..|+.+..+ .+.+||...|...+.                                         
T Consensus        13 hci~d~afkP--DGsqL~lAAg~-rlliyD~ndG~llqt-----------------------------------------   48 (1081)
T KOG1538|consen   13 HCINDIAFKP--DGTQLILAAGS-RLLVYDTSDGTLLQP-----------------------------------------   48 (1081)
T ss_pred             cchheeEECC--CCceEEEecCC-EEEEEeCCCcccccc-----------------------------------------
Confidence            3599999955  88888887655 488999988864432                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +++|.+.|.|++|+.||+.|++| .|..|.+|...-.+.+ +   
T Consensus        49 -----------------------------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k---   89 (1081)
T KOG1538|consen   49 -----------------------------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K---   89 (1081)
T ss_pred             -----------------------------------cccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e---
Confidence                                               57999999999999999999999 7999999987643322 1   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                            ..|.+.|.|+.|+|-. ..+++++.. ..-+|.........                  ......+.+++|..|
T Consensus        90 ------YSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K------------------~kss~R~~~CsWtnD  143 (1081)
T KOG1538|consen   90 ------YSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK------------------HKSSSRIICCSWTND  143 (1081)
T ss_pred             ------eccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh------------------hhhheeEEEeeecCC
Confidence                  4589999999999987 788887653 45677765433211                  111256889999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-----CEEEEEeCCCcEEEEe
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFG  425 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd  425 (513)
                      |++++.|-. |+|.+-+-.  +++.-.+..+.+..            .+|++++|+|..     ..+++.....++.+|.
T Consensus       144 GqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N------------spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN------------SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             CcEEEEeccCceEEeecCC--CCcceEEeCCCCCC------------CCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence            999999975 999988654  44433333322211            136799999964     4778888888999998


Q ss_pred             cCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          426 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                      +... .+ ..-+.-.-...++.+-++|.+++.|+.|+.+.+  ++|-.+      +..-++...|..++.+|+++.++.|
T Consensus       210 LsG~-~I-gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrL------GTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  210 LSGK-QI-GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRL------GTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             ecce-ee-cccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEE------eeccccceeEEEEEEccCCceEEEE
Confidence            8732 22 111122223347888999999999999999999  222211      2222356789999999999999988


Q ss_pred             c-CCcEEEE
Q 010287          504 A-SNSLYMY  511 (513)
Q Consensus       504 ~-~~~~~i~  511 (513)
                      . ++++-.|
T Consensus       282 CqDGTiACy  290 (1081)
T KOG1538|consen  282 CQDGTIACY  290 (1081)
T ss_pred             EccCeeehh
Confidence            8 5555444

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=5.1e-18  Score=151.86  Aligned_cols=258  Identities=18%  Similarity=0.186  Sum_probs=175.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|.+++|.|+..  .|++++.|++|++|+++...  ....                                       
T Consensus       295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~s~~---------------------------------------  331 (577)
T KOG0642|consen  295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--KSAE---------------------------------------  331 (577)
T ss_pred             hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--Cccc---------------------------------------
Confidence            8899999987554  89999999999999994311  0000                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                 ..               ..+..+ +.+|.++|.|+++.++++.+++| -||+|+.|++-...-.....+
T Consensus       332 -----------~~---------------~epi~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d  384 (577)
T KOG0642|consen  332 -----------KD---------------VEPILT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD  384 (577)
T ss_pred             -----------cc---------------eeeeEE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence                       00               011112 47999999999999999999999 699999997653222221111


Q ss_pred             cC--ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          272 VK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       272 ~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      +.  ...+.+|.+.+..+++++.. ..|++++.||++++|+......     .+|..+...          +.-.++.+-
T Consensus       385 p~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~~  448 (577)
T KOG0642|consen  385 PSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDRT  448 (577)
T ss_pred             cchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcccc----------CCcceEeec
Confidence            11  13578999999999999987 8899999999999999765543     223332221          234455554


Q ss_pred             ecCCEEEEEe--CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          350 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       350 p~~~~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      .....+..++  -+.-.++++.. ...+..+......  ....      ...+..+.++|.+.+.+++..|+.|+++|..
T Consensus       449 ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~--~~~~------~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  449 SSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASP--GPRR------YPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             cchhHhhhhhcccccccchhhhh-hhheeeccccCCC--cccc------cCccceEEecCCCCeeEecccCCceeccccc
Confidence            3221222222  13333444443 2222222211111  0100      0113378899999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++ .++.....|...+.++++.|+|.+|++++.|+.+++
T Consensus       520 ~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l  557 (577)
T KOG0642|consen  520 TG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL  557 (577)
T ss_pred             cc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence            88 566888899999999999999999999999999999

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=149.03  Aligned_cols=242  Identities=19%  Similarity=0.271  Sum_probs=159.6

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      .+..+|++.|+|++|+.+|.+||+|+.|-++.|||....+.                      +...-.||.        
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------   93 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------   93 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc--------
Confidence            36779999999999999999999999999999999654332                      223346888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.++.|.|..++.++++|+.|..|+++|+...+....-.                                   
T Consensus        94 ----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~-----------------------------------  134 (758)
T KOG1310|consen   94 ----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH-----------------------------------  134 (758)
T ss_pred             ----cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc-----------------------------------
Confidence                88999999998888999999999999999998643111000                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcce
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                   +....++.                  ...|...|..++..|++ ..|.++ .||+|+.+|++....+
T Consensus       135 -------------~~~~~~~~------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  135 -------------GMEETTRC------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             -------------Cccchhhh------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence                         00000111                  25677888999999987 677777 7999999999864332


Q ss_pred             eeeccc--CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc--------------cceeeccccCC
Q 010287          267 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------------HSKLFEEQEAP  330 (513)
Q Consensus       267 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~  330 (513)
                      ..-.+.  ....+...--...|+..+|..+.+|+.|+.|-..++||.|.......              .+..|......
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk  263 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK  263 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence            111000  00011122245679999999999999999999999999543211100              01111110000


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEE-eCCeEEEEEccC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM  370 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~~~v~iwd~~~  370 (513)
                      ...........-++-+.|+|+|..|+.. +...|+++|+..
T Consensus       264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            0000001111125677899999766664 336899999875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1e-17  Score=147.18  Aligned_cols=303  Identities=15%  Similarity=0.191  Sum_probs=216.7

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .-.|.+.|..|.|+..|..|++|+.|..|.+||+......                      ..-..||.          
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~----------  185 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC----------  185 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence            4479999999999999999999999999999999876641                      12235777          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                        ..|..-.|.|..+..-+++++.||.+++=.+.... +...                                      
T Consensus       186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t--------------------------------------  225 (559)
T KOG1334|consen  186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT--------------------------------------  225 (559)
T ss_pred             --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecc--------------------------------------
Confidence              77888889998888889999999999876654322 1111                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                          ..+..|.++|.-++.-|+. ..|.++ .|+.+.-+|+++.....
T Consensus       226 ------------------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  226 ------------------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             ------------------------------------eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence                                                1135788889999998864 445565 79999999998765433


Q ss_pred             eecccCccccccccC---CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc--cccceeeccccCCCCcccccccccc
Q 010287          268 NIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      .+.     .-..+..   ....++.+|...+.+++++.|-.+++||.+.-...  ...+..+..+..      .....-.
T Consensus       270 ~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~  338 (559)
T KOG1334|consen  270 KFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVN  338 (559)
T ss_pred             eee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCccc
Confidence            222     1111222   46789999988789999999999999998764321  000111211110      1122246


Q ss_pred             EEEEEEeec-CCEEEEEeCCeEEEEEccCC-C----------CCee-eeecccccccccccccccCCccceeeE-EEeCC
Q 010287          343 ISDIKFARN-GRHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGD  408 (513)
Q Consensus       343 v~~i~~sp~-~~~l~~~~~~~v~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~  408 (513)
                      |++++|+.+ +.+|++-.|-.|+++.-... +          ..+. .+++|.....             |-.+ -|-|.
T Consensus       339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPr  405 (559)
T KOG1334|consen  339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPR  405 (559)
T ss_pred             ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCc
Confidence            999999965 45666667778888854321 1          1112 2555554321             1133 36789


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+|+++|++-|.|.||+-.++ +++..+++...-|+++.-+|--..||+.+-|..|+|
T Consensus       406 sEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI  462 (559)
T KOG1334|consen  406 SEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI  462 (559)
T ss_pred             cceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence            999999999999999998877 666888888889999999999999999999999999

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=3.2e-15  Score=137.99  Aligned_cols=206  Identities=16%  Similarity=0.128  Sum_probs=128.2

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ...++++|++++++++  .++.|.+|++++........    ..+. +......++++|++..++++...++.|.+||+.
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----QIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----eecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            5679999999999887  48999999997433222111    0111 223467888999994444566667999999997


Q ss_pred             Cccccccc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCC-CC--Ceeeeeccccccc
Q 010287          313 QSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD-SG--PVATFQVHEHLRP  386 (513)
Q Consensus       313 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~~--~~~~~~~~~~~~~  386 (513)
                      +....... ........           ......+.|+|+++++++++.  +.|.+|+++.. ++  .+..+........
T Consensus       157 ~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            63321100 00011000           123567999999999988763  99999999742 22  1222221110000


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCC---CCceeEEEEcCCCCceeeecC-C
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEAS---KNPMRRQVQTPSRPSRPLGSL-S  461 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d  461 (513)
                             ..  .....+.++|++++|+++. .++.|.+|++....... ++..+   ....+.+.++|++++|++++. +
T Consensus       226 -------~~--~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        226 -------DT--RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             -------CC--ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence                   00  0012588999999999885 47899999986543221 11111   124457899999999987764 7


Q ss_pred             CeEEE
Q 010287          462 GVVRR  466 (513)
Q Consensus       462 ~~i~~  466 (513)
                      +.|.+
T Consensus       296 ~~v~v  300 (330)
T PRK11028        296 HHISV  300 (330)
T ss_pred             CcEEE
Confidence            88888

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=135.32  Aligned_cols=289  Identities=11%  Similarity=0.090  Sum_probs=176.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|+++.|  ..+ .+|+++..-|.|++|++++..-....+.....              ..+.+...|++.        
T Consensus        15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~--------------~it~lq~~p~d~--------   69 (323)
T KOG0322|consen   15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRL--------------FITNLQSIPNDS--------   69 (323)
T ss_pred             chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhccc--------------eeeceeecCCcc--------
Confidence            88999999  555 46999999999999999987655444322110              001122223222        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCC--eEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL--RINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~--~i~vwd~~~~~~~~~~~  270 (513)
                           ..+-+.+..+.+|++....          +...|.-.++++.|.+-.  +......  .+-.++-+.... ..+.
T Consensus        70 -----l~tqgRd~~L~lw~ia~s~----------~i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~  131 (323)
T KOG0322|consen   70 -----LDTQGRDPLLILWTIAYSA----------FISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ  131 (323)
T ss_pred             -----hhhcCCCceEEEEEccCcc----------eEEEeeeeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence                 2556778888888875422          234444444555554421  2222111  222333221111 0000


Q ss_pred             c--------cCccccccccCCeEEEEEeCC-CC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          271 D--------VKPANMEDLTEVITSAEFHPT-HC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       271 ~--------~~~~~~~~~~~~i~~~~~~~~-~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      +        +.+..-....+.+.|..+.-+ +. -++++|.++|.+.+||+.++.........++.      ..-...|.
T Consensus       132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv------~~~~ash~  205 (323)
T KOG0322|consen  132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV------ESPNASHK  205 (323)
T ss_pred             ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc------ccchhhcc
Confidence            0        111112233566777775432 21 35677888999999999987432211111111      11246688


Q ss_pred             ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCee---eeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      ++|.++.+.+.-..=++|+ +..+..|.+......++   ........               +..+.+-||++.+||++
T Consensus       206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG---------------v~gvrIRpD~KIlATAG  270 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG---------------VSGVRIRPDGKILATAG  270 (323)
T ss_pred             CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCC---------------ccceEEccCCcEEeecc
Confidence            9999999987433333433 46788888864211111   11111111               23788999999999999


Q ss_pred             CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|+.||||+.++. ..+..++.|...|++++|+|+...+|.++.|+.|.+
T Consensus       271 WD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  271 WDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             cCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence            9999999999988 556899999999999999999999999999999998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=4.5e-17  Score=139.44  Aligned_cols=212  Identities=13%  Similarity=0.155  Sum_probs=157.4

Q ss_pred             ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|+.+|..++|+|- ...||+||.|.+|.||++.......                +.......|.||.        
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~----------------~ltepvv~L~gH~--------  131 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR----------------DLTEPVVELYGHQ--------  131 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----------------CcccceEEEeecc--------
Confidence            45689999999999995 6789999999999999987655431                1223456788888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.-++|+|... +.|++++.|.+|.+|++.+++....                                     
T Consensus       132 ----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~-------------------------------------  169 (472)
T KOG0303|consen  132 ----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALIT-------------------------------------  169 (472)
T ss_pred             ----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeee-------------------------------------
Confidence                9999999999765 5899999999999999999863321                                     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                              ..|.+.|.+++|+.+|.+|++. .|..|+|||.+++....
T Consensus       170 ----------------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  170 ----------------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             ----------------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence                                                    2377889999999999999998 79999999999877654


Q ss_pred             eecccCcccccccc-CCeEEEEEeCCCCeEEEEEeC---CCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          268 NIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       268 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      +        -.+|. .....+.|-.++ .++.+|..   +..+-+||..+-+... -...++..             +.|
T Consensus       210 e--------~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDtS-------------nGv  266 (472)
T KOG0303|consen  210 E--------GVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDTS-------------NGV  266 (472)
T ss_pred             e--------cccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEeccC-------------Cce
Confidence            3        13443 344567788888 64444432   6789999977644321 02222222             345


Q ss_pred             EEEEEeecCCEEEEEe--CCeEEEEEccC
Q 010287          344 SDIKFARNGRHILSRD--YMTLKLWDINM  370 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~--~~~v~iwd~~~  370 (513)
                      .---|.||...+..++  |+.|+.|.+..
T Consensus       267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  267 LLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             EEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            5555678888777644  49999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=4.4e-16  Score=151.75  Aligned_cols=293  Identities=15%  Similarity=0.277  Sum_probs=180.5

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (513)
                      ..+..|++.-.    ...+...|+..|..++.++. +.++++|+.||+|++|+...-...+.                .+
T Consensus      1029 ~p~~gW~p~G~----lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------------s~ 1088 (1431)
T KOG1240|consen 1029 SPPPGWNPRGI----LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------------SA 1088 (1431)
T ss_pred             CCCCCCCccce----EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc----------------ee
Confidence            34555877643    22466778999999888776 59999999999999999753321100                00


Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      +-...+...            ...+.++.+++  +++.++.++.||.|++.++.........-..               
T Consensus      1089 rS~ltys~~------------~sr~~~vt~~~--~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~--------------- 1139 (1431)
T KOG1240|consen 1089 RSELTYSPE------------GSRVEKVTMCG--NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ--------------- 1139 (1431)
T ss_pred             eeeEEEecc------------CCceEEEEecc--CCCeEEEEcCCCeEEEEEccccccccceeee---------------
Confidence            011111111            26788888876  5669999999999999998763211110000               


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CC-EEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GE-TFI  248 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~-~l~  248 (513)
                                                          .++.+.                .....-|..-+|... +. .++
T Consensus      1140 ------------------------------------~ri~n~----------------~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1140 ------------------------------------VRIPNL----------------KKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred             ------------------------------------eecccc----------------cCCCceEEeecccccccceeEE
Confidence                                                000000                000111333334332 22 556


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      .+ .-+.|..||.+.......+      ......+.|++++.+|.+ +++++|+..|.+.+||+|-+..    +..|+.+
T Consensus      1168 y~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~----i~sw~~P 1236 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP----ILSWEHP 1236 (1431)
T ss_pred             EEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce----eecccCc
Confidence            66 7889999999866544432      233345779999999998 8999999999999999997765    3333322


Q ss_pred             cCCCCccccccccccEEEEEEee---cCCEEEE-Ee-C-CeEEEEEccCCCCCeeeeecccccccccccccccC-----C
Q 010287          328 EAPGTRSFFTEIIASISDIKFAR---NGRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND-----S  396 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~-~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  396 (513)
                                 +..+++.+..+|   .....++ +. . +.|.+|++.+ +..-..+..... ...+......+     .
T Consensus      1237 -----------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1237 -----------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDG-APILSYALPSNDARKPD 1303 (1431)
T ss_pred             -----------ccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCC-CcchhhhcccccCCCCC
Confidence                       225778887776   3345555 44 3 8999999996 555555544311 11111111111     0


Q ss_pred             ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      ......+.+..-+.++.+|+.|..|+.||....
T Consensus      1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cccceeeecccCCceeeecCCccceeeccCCCc
Confidence            111223455556678999999999999998765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=133.91  Aligned_cols=358  Identities=15%  Similarity=0.158  Sum_probs=211.1

Q ss_pred             EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      -.+|||+|+|+|+.++. ++.|-|..+-+..                       +-|.             .-+.|.-|.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~-------------cldki~yie   55 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFL-------------CLDKIVYIE   55 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHH-------------HHHHhhhee
Confidence            46799999999999866 7888886654431                       1010             015688899


Q ss_pred             EeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287          120 WCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (513)
Q Consensus       120 ~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  198 (513)
                      |.  .+..+++++ ..|+.|.+|++..-+........               ...-+...|||||+.+           .
T Consensus        56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg---------------~agls~~~WSPdgrhi-----------L  107 (447)
T KOG4497|consen   56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG---------------QAGLSSISWSPDGRHI-----------L  107 (447)
T ss_pred             ee--ccceeeeeeeeccceEEEEEeecceeEEEeccC---------------CCcceeeeECCCcceE-----------e
Confidence            94  566666665 77889999999876544332211               1222367899999754           1


Q ss_pred             cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCC-eEEEEEcCCCcceeeecccCcccc
Q 010287          199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL-RINLWNLEISNQSFNIVDVKPANM  277 (513)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~  277 (513)
                      .....+-.|.+|.+.+.......        -.+..+..++|+|+|++.+.+... ......+.. .+...++    ..+
T Consensus       108 ~tseF~lriTVWSL~t~~~~~~~--------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~-c~~W~ll----~~f  174 (447)
T KOG4497|consen  108 LTSEFDLRITVWSLNTQKGYLLP--------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS-CKAWILL----KEF  174 (447)
T ss_pred             eeecceeEEEEEEeccceeEEec--------ccccCceeEEECCCCceeeeeecccHHHHHHHHh-hHHHHHH----Hhc
Confidence            44556778999999775543222        223446889999999998876311 111111110 0001100    122


Q ss_pred             ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          278 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      .-.+-..+.+.|+||| +.++.         ||---...    +..++..             -.+..+.|+|.+++|+.
T Consensus       175 ~~dT~DltgieWsPdg-~~laV---------wd~~Leyk----v~aYe~~-------------lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  175 KLDTIDLTGIEWSPDG-NWLAV---------WDNVLEYK----VYAYERG-------------LGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             CCCcccccCceECCCC-cEEEE---------ecchhhhe----eeeeeec-------------cceeEEEeccccceEEe
Confidence            2234456788899998 66653         54211100    1111111             24777889999999998


Q ss_pred             EeC-CeEEEEEccC---CCC---------------------Cee-----------eeecccccccccccccc--------
Q 010287          358 RDY-MTLKLWDINM---DSG---------------------PVA-----------TFQVHEHLRPKLCDLYE--------  393 (513)
Q Consensus       358 ~~~-~~v~iwd~~~---~~~---------------------~~~-----------~~~~~~~~~~~~~~~~~--------  393 (513)
                      |+. +.+++.+--+   -++                     +++           .+..|....+  ...|+        
T Consensus       228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s--e~~YE~~~~pv~~  305 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES--ETIYEQQMTPVKV  305 (447)
T ss_pred             eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc--hhhhhhhhcceee
Confidence            875 7777754211   000                     000           0000000000  00000        


Q ss_pred             ------c---CCccceeeEEEeCCCCEEEEEeC--CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287          394 ------N---DSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       394 ------~---~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                            .   +...++-.++|++|..|++|-.+  -+.+.+||++..  ++...-....+|+...|.|...-|+.+....
T Consensus       306 ~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  306 HKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             ecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence                  0   01113557899999999998664  367999999854  3344445567899999999999888886555


Q ss_pred             eEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          463 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       463 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                      .+.+   |.+.+....+ .-.-.-.|..+.|+-+|..|+..+.|...+
T Consensus       384 rLY~---W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  384 RLYF---WAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             eEEE---EcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence            5666   4433211111 111246799999999999999888776554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=1.3e-15  Score=140.58  Aligned_cols=244  Identities=10%  Similarity=0.079  Sum_probs=148.3

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd  310 (513)
                      ....++++|++++|+++  .++.|.+|++...... ....    .. ........++++|++ +++++++ .++.|.+|+
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~  108 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSP  108 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEE
Confidence            35678999999998776  4899999999732222 1110    11 122346789999999 6555554 589999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCee----eeeccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA----TFQVHEHL  384 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~----~~~~~~~~  384 (513)
                      +............+..             .....+++++|+++++++++ . +.|.+||+...+....    ......+.
T Consensus       109 ~~~~g~~~~~~~~~~~-------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~  175 (330)
T PRK11028        109 LDKDGIPVAPIQIIEG-------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA  175 (330)
T ss_pred             ECCCCCCCCceeeccC-------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence            8643221111111111             12467788999999997755 3 9999999975232211    01111110


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCC-c--cceeecCC------CCceeEEEEcCCCCc
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGS-A--ESTTLEAS------KNPMRRQVQTPSRPS  454 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~-~--~~~~~~~~------~~~v~~~~~~~~~~~  454 (513)
                                 .   ...+.|+|++++++++.. ++.|.+|++.... .  ....+...      ......+.++|++++
T Consensus       176 -----------~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        176 -----------G---PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             -----------C---CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence                       0   126899999999988775 8999999997421 1  12222211      112235889999999


Q ss_pred             eeeecC-CCeEEEecCCCCC-ccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287          455 RPLGSL-SGVVRRVKGADNS-ALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYY  512 (513)
Q Consensus       455 l~~~~~-d~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~  512 (513)
                      ++++.. ++.|.+.+-.... ...+.. ...-......++|+|||++|+++.  ++.+.+|.
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            888754 6777772111000 000111 111123567899999999999766  67888874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1e-16  Score=142.67  Aligned_cols=224  Identities=16%  Similarity=0.216  Sum_probs=156.0

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .+|.+.+.+-.|+|+|.-|+++ .||.|++|... + .+..       .+.....+|+|++|.|+..+.+++.+  +.+.
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-MLRS-------tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~  169 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-MLRS-------TVVQNEESIRCARWAPNSNSIVFCQG--GHIS  169 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-hHHH-------HHhhcCceeEEEEECCCCCceEEecC--CeEE
Confidence            5888999999999999999987 79999999865 2 2221       33445788999999999855555433  3444


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      +=-+.....    +..            .+.|.+-|.++.|++...++++|++ -..+|||-.  +.++..-..|+.+  
T Consensus       170 IKpL~~n~k----~i~------------WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~--  229 (737)
T KOG1524|consen  170 IKPLAANSK----IIR------------WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYA--  229 (737)
T ss_pred             Eeecccccc----eeE------------EeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccc--
Confidence            433322211    111            4567789999999999999999775 899999986  7777777777765  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                   |++++|.|+ +.++.++. +++++=.++            .+.|..+.|++||..++.|...|.+.+
T Consensus       230 -------------ITSva~npd-~~~~v~S~-nt~R~~~p~------------~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  230 -------------ITSVAFNPE-KDYLLWSY-NTARFSSPR------------VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             -------------eeeeeeccc-cceeeeee-eeeeecCCC------------ccceEEEEEcCCCceeeccccCceEEE
Confidence                         679999999 66666665 355533333            347789999999999999999999887


Q ss_pred             ---ecCCCCC-cc----------------ccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          467 ---VKGADNS-AL----------------DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       467 ---~~~~~~~-~~----------------~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                         ++..-.. ..                ......+++.++|...+  -.-..|++++...+++|+
T Consensus       283 A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys  346 (737)
T KOG1524|consen  283 AYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS  346 (737)
T ss_pred             eeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence               1000000 00                00112334556666655  344578888888899886

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=5.4e-16  Score=129.44  Aligned_cols=225  Identities=13%  Similarity=0.178  Sum_probs=160.7

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ..+|+|.+|++|+..+|++..+..|.||...+.+.                    +....+++.|.            ..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd------------~~   57 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHD------------KI   57 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhC------------cc
Confidence            47999999999999999999999999999876552                    33456677787            88


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEc-cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      |+.|+|.|  ..+.|++++.|+.-.||.. ..++.+....                                        
T Consensus        58 vtgvdWap--~snrIvtcs~drnayVw~~~~~~~Wkptlv----------------------------------------   95 (361)
T KOG1523|consen   58 VTGVDWAP--KSNRIVTCSHDRNAYVWTQPSGGTWKPTLV----------------------------------------   95 (361)
T ss_pred             eeEEeecC--CCCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence            99999976  5558999999999999998 4554433321                                        


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        +..++..++++.|+|..+.|++| ....|.||.++.++.-.--.  
T Consensus        96 ----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK--  139 (361)
T KOG1523|consen   96 ----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK--  139 (361)
T ss_pred             ----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh--
Confidence                                              23555678999999999999999 68899999998554331110  


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc--cccccccccEEEEEEee
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR--SFFTEIIASISDIKFAR  350 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~sp  350 (513)
                        +.-..+.+.|+++.|+|++ -++++|+.|+..++|..--.....++...--+.+.+...  .-+....+.+..+.|+|
T Consensus       140 --hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~  216 (361)
T KOG1523|consen  140 --HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP  216 (361)
T ss_pred             --hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence              1113467889999999998 899999999999999754222111110000000000000  00112347899999999


Q ss_pred             cCCEEEE-EeCCeEEEEEccCCC
Q 010287          351 NGRHILS-RDYMTLKLWDINMDS  372 (513)
Q Consensus       351 ~~~~l~~-~~~~~v~iwd~~~~~  372 (513)
                      +|..|+- +.|..+.+-|...+.
T Consensus       217 sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  217 SGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCEeeEecCCCceEEeecCCCc
Confidence            9999886 567999998877533

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.9e-15  Score=140.74  Aligned_cols=305  Identities=17%  Similarity=0.252  Sum_probs=201.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ..+.|+-.++|.++||+++++|+|..||+|.+|.--....                   +-.-.+.++-|.         
T Consensus       200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------  251 (792)
T KOG1963|consen  200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------  251 (792)
T ss_pred             hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc---------
Confidence            3557888899999999999999999999999998432110                   000123456676         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|+++.|+  .+|.+|++|+..+.+.+|.+.+++.+.                                       
T Consensus       252 ---~~V~~L~fS--~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------  287 (792)
T KOG1963|consen  252 ---DEVNSLSFS--SDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------  287 (792)
T ss_pred             ---cccceeEEe--cCCceEeecccceEEEEEeecCCCccc---------------------------------------
Confidence               789999995  588999999999999999999886221                                       


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +..-..+|..+.++||+.+.+.. .|+.|.+....+......
T Consensus       288 --------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  288 --------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             --------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence                                                  12223568899999999998887 899999998765443333


Q ss_pred             ecccCcc---ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          269 IVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       269 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      +-.+.+.   .-....+-.+.++++|.- +.++..+..|.|.+||+.+.....+ +..........    ...+.-.++.
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~----~~n~~v~ita  403 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDG----DVNIQVGITA  403 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCC----cceeEEeeee
Confidence            3222221   111234556788999965 7888899999999999987665322 22211111110    0123346788


Q ss_pred             EEEeecCCEEEEEe---------C--CeEEEEEccCCCCCe---e-eeecccccccccccccccCCccceeeEEE-eCCC
Q 010287          346 IKFARNGRHILSRD---------Y--MTLKLWDINMDSGPV---A-TFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDG  409 (513)
Q Consensus       346 i~~sp~~~~l~~~~---------~--~~v~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~  409 (513)
                      ++.+-.|.++++..         +  -.+++|-.....+-.   . ....|...               +...++ ++..
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~---------------~vat~~~~~~r  468 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA---------------FVATIFLNPTR  468 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce---------------eEEEEEecCcc
Confidence            88888899999842         1  357788766322111   1 11223322               113333 3333


Q ss_pred             -CEEEEEeCCCcEEEEecCCCCccc---------eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          410 -GRVATGSYSNLFRVFGCSEGSAES---------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       410 -~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       ...++++.||.+++|-+...+...         ..-..|..++...+|+.||..|+. +.|+.|.+
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Iti  534 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITI  534 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEE
Confidence             378899999999999884332111         111146889999999999966555 56888888

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.8e-16  Score=146.73  Aligned_cols=170  Identities=14%  Similarity=0.101  Sum_probs=110.5

Q ss_pred             EEEeccCCCEEEEE--cCCeEEEE--EcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          237 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       237 ~~~~~~~~~~l~s~--~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      .++|+|||+.|+.+  .+|.+.||  |+.++. ..        .+..+...+..+.|+|++..+++++..+|...+|++.
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~--------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS--------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE--------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            57899999988875  47766555  554332 21        3344566678999999993344455567888999875


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      .....   ...+             ++..  ....|+|||++|+..+...+.+||+.. +...........         
T Consensus       323 ~~~~~---~~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~~lt~~~~~---------  374 (429)
T PRK01742        323 ASGGG---ASLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTEVLSSTFLD---------  374 (429)
T ss_pred             CCCCC---eEEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeEEecCCCCC---------
Confidence            43211   1111             1112  346799999999886654566799875 443221111111         


Q ss_pred             ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC-CCccceeecCCCCceeEEEEcCC
Q 010287          393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                              ..+.|+|||++|+.++.++...+|++.. .+.....+..|...+...+|+|-
T Consensus       375 --------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        375 --------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                    1578999999999999899888887632 12445667777777888888875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.4e-14  Score=123.49  Aligned_cols=159  Identities=11%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID  310 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd  310 (513)
                      ..|.++.++.  +.|+++-...|+|||+++.+.+..+.     ....+...+..+.+++.+ .+++.-+  ..|.|.+||
T Consensus        88 t~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             CceEEEEEcc--ceEEEEEcccEEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence            4477777765  46777744449999999877655442     223345557777777766 5666433  378999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeeccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      +.+-+.    ...            +..|++.+.+++|+++|.+||++++ | .|+||.+.. ++.+..++.......  
T Consensus       160 ~~nl~~----v~~------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~--  220 (391)
T KOG2110|consen  160 TINLQP----VNT------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS--  220 (391)
T ss_pred             ccccee----eeE------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE--
Confidence            877554    222            4567799999999999999999998 5 568999986 888887765443322  


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                                 |.+++|+|++++|++.+..++|++|.++..
T Consensus       221 -----------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  221 -----------IYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -----------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                       559999999999999999999999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=3.3e-13  Score=130.45  Aligned_cols=318  Identities=23%  Similarity=0.370  Sum_probs=213.7

Q ss_pred             ccEEEEEE-cCCCC-EEEeecC-CCcEEEEEeeC-CCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           36 DIISAIEF-DKSGD-HLATGDR-GGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        36 ~~V~~v~~-sp~g~-~latg~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ..+..+.+ ++++. +++..+. |+.+.+|+... ..                       ....+..|.           
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~-----------  155 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-----------------------LIRTLEGHS-----------  155 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-----------------------EEEEEecCc-----------
Confidence            47788777 88887 5555444 99999999875 22                       234567777           


Q ss_pred             cccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                       ..|..++|+|  ++..+++++. |+.+++|++..+.....                                       
T Consensus       156 -~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  193 (466)
T COG2319         156 -ESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST---------------------------------------  193 (466)
T ss_pred             -ccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe---------------------------------------
Confidence             7899999965  6557888775 99999999987432221                                       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                           +.+|...|.+++|+|++. .++++ .|+.|++||...+.....
T Consensus       194 -------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~  236 (466)
T COG2319         194 -------------------------------------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS  236 (466)
T ss_pred             -------------------------------------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee
Confidence                                                 234778899999999988 55553 699999998774333221


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|.... ...|+|++ ..+++++.|+.+++|+++....   ....+            .+|...+.++.|
T Consensus       237 -------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---~~~~~------------~~~~~~v~~~~~  292 (466)
T COG2319         237 -------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---LLRTL------------SGHSSSVLSVAF  292 (466)
T ss_pred             -------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---EEEEE------------ecCCccEEEEEE
Confidence                   245666664 33899998 8888999999999999986553   01111            233478999999


Q ss_pred             eecCCEEEEEe-CCeEEEEEccCCCCCeeeee--cccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEE
Q 010287          349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVF  424 (513)
Q Consensus       349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw  424 (513)
                      +|++..+++++ ++.+.+|+... ........  .|...               +..+.|.+++..++.+ ..|+.+.+|
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~~  356 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDDGTIRLW  356 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCCCcEEee
Confidence            99888888865 47799998875 44443333  33331               3367773343556655 678999999


Q ss_pred             ecCCCCccceeecCCCCceeEEEEcCCCCceee-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          425 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       425 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                      +..... ........ ..+..+.+.+ ...... +..++.+.+   +.............+...+....+++++..++.+
T Consensus       357 ~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
T COG2319         357 DLRTGK-PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRL---WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG  430 (466)
T ss_pred             ecCCCc-eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEE---EecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence            998774 22222222 2277888888 544444 678888888   2222111111111111789999999999999874


Q ss_pred             c-CCcEEEEe
Q 010287          504 A-SNSLYMYY  512 (513)
Q Consensus       504 ~-~~~~~i~~  512 (513)
                      + ++.+.+|.
T Consensus       431 ~~~~~~~~~~  440 (466)
T COG2319         431 SSDNTIRLWD  440 (466)
T ss_pred             cCCCcEEEEe
Confidence            4 66777764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=8e-16  Score=133.36  Aligned_cols=196  Identities=15%  Similarity=0.140  Sum_probs=143.1

Q ss_pred             EEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          236 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      .+++|+.+|..++++ .||++|+|+........        ....|...|.++.|+||+ ++|++-+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence            679999999999998 79999999965444332        446688899999999999 999999999 9999999998


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecC---CEEEEE--eC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSR--DY-MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~l~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      .....    .....          -......+.|+.|+   .+.+.+  .. +.|+.|++..-..- ..++.....    
T Consensus       218 ~~~a~----~t~~~----------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~----  278 (398)
T KOG0771|consen  218 AALAR----KTPFS----------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI----  278 (398)
T ss_pred             chhhh----cCCcc----------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence            54322    11111          11346667888765   333332  23 77888777541110 111111100    


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                            .....|++++.++||++++.|+.||.|.+++..+.+.....-+.|...|+.+.|+|+.+++++-+.|....+
T Consensus       279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence                  011125599999999999999999999999999876666777899999999999999999999888877777

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=3.3e-15  Score=123.06  Aligned_cols=208  Identities=7%  Similarity=0.166  Sum_probs=152.7

Q ss_pred             ccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .++..++++..|+. +-++|.+.+-|-+..|||++++..                    +.+.+++-+|+          
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------------~~vkTQLIAHD----------  196 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------------GTVKTQLIAHD----------  196 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------------cceeeEEEecC----------
Confidence            35678999999987 467999999999999999987631                    12446778888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|+.|+|.. ..-..|++.+.||.+|++|++..+-..+.--.                                   
T Consensus       197 --KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-----------------------------------  238 (364)
T KOG0290|consen  197 --KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED-----------------------------------  238 (364)
T ss_pred             --cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC-----------------------------------
Confidence              7899999964 22357888999999999999876432221100                                   


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE--cCCeEEEEEcCCCccee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA--DDLRINLWNLEISNQSF  267 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~--~d~~i~vwd~~~~~~~~  267 (513)
                                                            .....+...++|++. -+++++-  +...|.+.|++.....+
T Consensus       239 --------------------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv  280 (364)
T KOG0290|consen  239 --------------------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV  280 (364)
T ss_pred             --------------------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence                                                  011244677889884 5666663  68889999999766544


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc--ccccceeeccccCCCCccccccccccEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      .       .+++|.+.|+.++|.|..+..|.+++.|..+.+||+.....  ...++..+.             ..+.|..
T Consensus       281 a-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-------------a~~EVNq  340 (364)
T KOG0290|consen  281 A-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-------------AGGEVNQ  340 (364)
T ss_pred             e-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-------------ccceeee
Confidence            3       78999999999999999889999999999999999976322  111111221             2367999


Q ss_pred             EEEee-cCCEEEEEeCCeEEE
Q 010287          346 IKFAR-NGRHILSRDYMTLKL  365 (513)
Q Consensus       346 i~~sp-~~~~l~~~~~~~v~i  365 (513)
                      +.|+| .+.+++.+....+.+
T Consensus       341 i~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  341 IQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             eeecccCCCEEEEEecCeeeE
Confidence            99997 677888877655544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3e-15  Score=126.09  Aligned_cols=266  Identities=11%  Similarity=0.137  Sum_probs=164.4

Q ss_pred             cccccccccEEEEEEcC--CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           29 GEEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      .++.+|...++-+.|..  .+..+.+++.||+|++||+......                     ....+..|.+     
T Consensus        64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~-----  117 (376)
T KOG1188|consen   64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG-----  117 (376)
T ss_pred             heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC-----
Confidence            35667888888898876  4678999999999999998766542                     1112223321     


Q ss_pred             ccccccccceeEEEeecCCCceEEEee----cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccC
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (513)
                            .+-.+++-  ..++..+++++    .|-.|.+||++..+..                                 
T Consensus       118 ------~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------------------  156 (376)
T KOG1188|consen  118 ------TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------------------------  156 (376)
T ss_pred             ------CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch---------------------------------
Confidence                  33455554  33445666653    3667888988765421                                 


Q ss_pred             CCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEc
Q 010287          183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL  260 (513)
Q Consensus       183 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~  260 (513)
                                                               .+.+...|.+.|+++.|+| +.++|++| -||-|.++|+
T Consensus       157 -----------------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  157 -----------------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             -----------------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence                                                     1122468899999999999 56788888 5999999999


Q ss_pred             CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      +.....-.+.     ..-.|...|.++.|..++-+.|.+-+..+...+|++..+.....    ++.+.....-.-.....
T Consensus       196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~----~~~~~~~~~d~r~~~~~  266 (376)
T KOG1188|consen  196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW----LENPDVSADDLRKEDNC  266 (376)
T ss_pred             CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc----ccCccchhhhHHhhhhh
Confidence            8553221111     23456788999999988756789999999999999988764211    11110000000000001


Q ss_pred             ccEEEEEEee-cCCEEEE-EeC-CeEEEEEccC--CC---CCeeeeec-ccccccccccccccCCccceeeEEEeCCCCE
Q 010287          341 ASISDIKFAR-NGRHILS-RDY-MTLKLWDINM--DS---GPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       341 ~~v~~i~~sp-~~~~l~~-~~~-~~v~iwd~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      ..+... .+| +...++. |++ +...++-+..  .+   ..+..+.+ |...               |.++.|...+.+
T Consensus       267 dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei---------------VR~i~~~~~~~~  330 (376)
T KOG1188|consen  267 DYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI---------------VRDILFDVKNDV  330 (376)
T ss_pred             hheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH---------------HHHHhhhcccce
Confidence            122222 223 4444443 554 6666665541  12   22333333 3322               236778888899


Q ss_pred             EEEEeCCCcEEEEecC
Q 010287          412 VATGSYSNLFRVFGCS  427 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~  427 (513)
                      +.||+.||.+.+|...
T Consensus       331 l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  331 LYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eeccCCCceEEEEecC
Confidence            9999999999999853

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=8.2e-16  Score=133.31  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=137.0

Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEE
Q 010287          285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK  364 (513)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~  364 (513)
                      .+++|+++| ..+++++.||++|+|+..+.....      +          ...|.+.|.++.|+|||++|++-+....+
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l------~----------e~~~~~eV~DL~FS~dgk~lasig~d~~~  210 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL------E----------EIAHHAEVKDLDFSPDGKFLASIGADSAR  210 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhh------h----------hHhhcCccccceeCCCCcEEEEecCCceE
Confidence            789999998 999999999999999965543311      1          34567899999999999999984433899


Q ss_pred             EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC---CE--EEEEeCCCcEEEEecCCCCc----ccee
Q 010287          365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---GR--VATGSYSNLFRVFGCSEGSA----ESTT  435 (513)
Q Consensus       365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~--l~~~~~dg~i~vwd~~~~~~----~~~~  435 (513)
                      ||++++ +..+..........          .   ...+.|+.|+   .+  .+.....+.|+.|++.....    ....
T Consensus       211 VW~~~~-g~~~a~~t~~~k~~----------~---~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~  276 (398)
T KOG0771|consen  211 VWSVNT-GAALARKTPFSKDE----------M---FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK  276 (398)
T ss_pred             EEEecc-CchhhhcCCcccch----------h---hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence            999997 65555544222110          0   1267888777   33  33334556788877765433    1122


Q ss_pred             ecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          436 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       436 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                      .....+.+.++.++++|+++|.|+.||.|-+++..++..  .......|..-|+.+.|+||.+++++.+ ++...+.
T Consensus       277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            223345789999999999999999999999966665542  2222335888999999999999999544 5555443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.9e-15  Score=142.47  Aligned_cols=218  Identities=13%  Similarity=0.143  Sum_probs=137.5

Q ss_pred             cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eCCC
Q 010287          230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKG  304 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg  304 (513)
                      .|...+.+.+|+|+|+.|+.. .   +..|++||+.++.... +.     .+.++   ...++|+||+ +.|+.+ +.+|
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~~g~---~~~~~wSPDG-~~La~~~~~~g  270 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SFRGH---NGAPAFSPDG-SRLAFASSKDG  270 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cCCCc---cCceeECCCC-CEEEEEEecCC
Confidence            455668899999999999875 2   3479999998654321 10     22333   3468999999 666554 5688


Q ss_pred             cEEEE--EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeec
Q 010287          305 SIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       305 ~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~  380 (513)
                      .+.||  |+.++..     ..+            ..+...+....|+|||+.|+..++  +...||++...+.....+ .
T Consensus       271 ~~~Iy~~d~~~~~~-----~~l------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~  332 (429)
T PRK01742        271 VLNIYVMGANGGTP-----SQL------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G  332 (429)
T ss_pred             cEEEEEEECCCCCe-----Eee------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence            77666  5544432     111            222245778999999998876543  788888876533333322 1


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      +..                 ....|+|||++|+..+.++ +.+||+.++..... ....  ......|+|+++.|++++.
T Consensus       333 ~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        333 GRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCCC--CCCCceECCCCCEEEEEEc
Confidence            111                 1467999999998887765 56699987743321 1221  2346789999999999988


Q ss_pred             CCeEEEecCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287          461 SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE  497 (513)
Q Consensus       461 d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~  497 (513)
                      ++.+.+.......+ ........|.+.+...+|||--
T Consensus       392 ~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        392 QGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             CCCceEEEEEECCC-CceEEccCCCCCCCCcccCCCC
Confidence            88776511111100 0111222467788999999853

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.68  E-value=2.1e-16  Score=147.85  Aligned_cols=269  Identities=17%  Similarity=0.212  Sum_probs=191.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .+|+|..|  +..|.++++++.|..++||.++++.+...                                         
T Consensus       191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs-----------------------------------------  227 (1113)
T KOG0644|consen  191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS-----------------------------------------  227 (1113)
T ss_pred             hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-----------------------------------------
Confidence            89999999  77889999999999999999888764332                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         ..||.+.|+.++.+.+..+++++ .|..|++|.+.++... .   
T Consensus       228 -----------------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv-s---  268 (1113)
T KOG0644|consen  228 -----------------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV-S---  268 (1113)
T ss_pred             -----------------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH-H---
Confidence                                               36899999999999988888888 6999999999876543 2   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|++.|++++|+|..     +.+.||++++||.+-..      +.+....    .  .......+.++.|...
T Consensus       269 ----vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp----~--~~~~~~~~~s~~~~~~  327 (1113)
T KOG0644|consen  269 ----VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRP----L--KFTEKDLVDSILFENN  327 (1113)
T ss_pred             ----HHhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCC----C--Ccccccceeeeecccc
Confidence                468999999999999963     67899999999988211      1111000    0  0011145677778888


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +.-++++++ +.-..|.+..       +..+....              + -+.++.| ..+.+++-.+..+.+|++.++
T Consensus       328 ~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l--------------i-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g  385 (1113)
T KOG0644|consen  328 GDRFLTGSRDGEARNHEFEQ-------LAWRSNLL--------------I-FVTRSSDLSSIVVTARNDHRLCVWNLYTG  385 (1113)
T ss_pred             ccccccccCCcccccchhhH-------hhhhccce--------------E-EEeccccccccceeeeeeeEeeeeecccc
Confidence            888888875 7777766542       01111100              0 0111112 246677778889999999988


Q ss_pred             CccceeecCCCCceeEEEEcCCCCce-eeecCCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SN  506 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~  506 (513)
                       .+...+.+|..++..+.++|-...+ .+++.||...|   |..+.. .+.....+ ...+...+||+||..++... .+
T Consensus       386 -~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i---wdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hg  460 (1113)
T KOG0644|consen  386 -QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII---WDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHG  460 (1113)
T ss_pred             -hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEe---eecccCCcceeeecc-cceeeccccCCCCceEecCCCCC
Confidence             6668899999999999999987765 57899999999   444311 11111122 45677889999999888554 66


Q ss_pred             cEEEE
Q 010287          507 SLYMY  511 (513)
Q Consensus       507 ~~~i~  511 (513)
                      .++|+
T Consensus       461 ql~i~  465 (1113)
T KOG0644|consen  461 QLYIL  465 (1113)
T ss_pred             ceEEe
Confidence            66665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.2e-14  Score=118.82  Aligned_cols=269  Identities=12%  Similarity=0.131  Sum_probs=165.9

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .-.+.-++|++.-..+|++..|-.|+||+-.....                        ..++.-.           +..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrn  142 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRN  142 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcc
Confidence            45678899999877889999999999999655221                        1111111           266


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |++++|-|... ..|+.|+..| |.+|.....-.... ..                                        
T Consensus       143 vtclawRPlsa-selavgCr~g-IciW~~s~tln~~r-~~----------------------------------------  179 (445)
T KOG2139|consen  143 VTCLAWRPLSA-SELAVGCRAG-ICIWSDSRTLNANR-NI----------------------------------------  179 (445)
T ss_pred             eeEEEeccCCc-ceeeeeecce-eEEEEcCccccccc-cc----------------------------------------
Confidence            99999987443 4677777666 89998764321100 00                                        


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                           ...+.....+              .  .-.+| ..|+++.|++||..++++  .|..|.+||..++....-    
T Consensus       180 -----~~~s~~~~qv--------------l--~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----  233 (445)
T KOG2139|consen  180 -----RMMSTHHLQV--------------L--QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----  233 (445)
T ss_pred             -----ccccccchhh--------------e--eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc----
Confidence                 0000000000              0  01344 569999999999999998  599999999997765421    


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         . ....+.+.-+.|+||+ .+|+++.-|+..++|+........+                ..-..+.|...+|+|+|
T Consensus       234 ---~-~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----------------w~lgsgrvqtacWspcG  292 (445)
T KOG2139|consen  234 ---I-PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----------------WILGSGRVQTACWSPCG  292 (445)
T ss_pred             ---c-ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----------------eeccCCceeeeeecCCC
Confidence               1 1234568899999999 8899999999999996543221110                01112579999999999


Q ss_pred             CEEEEEeCCeEEEEEccCCCCCeeeee-cccccccccccccccC-------CccceeeEEEeCCCCEEEEEeCCC-----
Q 010287          353 RHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYEND-------SIFDKFECCLSGDGGRVATGSYSN-----  419 (513)
Q Consensus       353 ~~l~~~~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg-----  419 (513)
                      ++|+-...+.-.+|.+...++...... ........+.++.+..       +--+..+++|.|.|++|++.-..+     
T Consensus       293 sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~  372 (445)
T KOG2139|consen  293 SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL  372 (445)
T ss_pred             CEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence            998876666667777765333322211 0000011111111110       011244899999999999765443     


Q ss_pred             ---cEEEEecCC
Q 010287          420 ---LFRVFGCSE  428 (513)
Q Consensus       420 ---~i~vwd~~~  428 (513)
                         .|.+||...
T Consensus       373 ~k~~i~~fdtr~  384 (445)
T KOG2139|consen  373 CKLHISRFDTRK  384 (445)
T ss_pred             hhhhhhhhcccc
Confidence               355666553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.7e-14  Score=121.05  Aligned_cols=320  Identities=12%  Similarity=0.106  Sum_probs=191.2

Q ss_pred             cccEEEEEEcCCCCEEEe-ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~lat-g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      -+.|.-+.|..|..++++ ...++.|.+|++...+.                       ...+..-.            .
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----------------------~ckIdeg~------------a   92 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----------------------YCKIDEGQ------------A   92 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----------------------EEEeccCC------------C
Confidence            478888999998776655 56788999999865432                       12222222            7


Q ss_pred             cceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          114 KINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++.+++|+|  +|+.+ .++.-|-.|.+|.+.+.+...+.-...                .....+|.|||++..+..-.
T Consensus        93 gls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~----------------~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   93 GLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT----------------NVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             cceeeeECC--CcceEeeeecceeEEEEEEeccceeEEeccccc----------------CceeEEECCCCceeeeeecc
Confidence            799999966  77454 455779999999998876544322111                11256888888865332111


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc---CCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---d~~i~vwd~~~~~~~~~~  269 (513)
                                  ......++....   .....+. ..-.+-..+.+.|+|||..|++=+   +-.|..|..         
T Consensus       155 ------------DCkdyv~i~~c~---~W~ll~~-f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---------  209 (447)
T KOG4497|consen  155 ------------DCKDYVQISSCK---AWILLKE-FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------  209 (447)
T ss_pred             ------------cHHHHHHHHhhH---HHHHHHh-cCCCcccccCceECCCCcEEEEecchhhheeeeeee---------
Confidence                        000000000000   0000000 112233467899999998887631   333332221         


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc----------------------------c
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH----------------------------S  321 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------------~  321 (513)
                                 .-.+..++|+|.+ ++++.|+.|+.+|+.+--+-+...+.                            +
T Consensus       210 -----------~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL  277 (447)
T KOG4497|consen  210 -----------GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL  277 (447)
T ss_pred             -----------ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence                       2347789999988 89999999999987553321110000                            0


Q ss_pred             ----eeeccccCCCC------------------ccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCee
Q 010287          322 ----KLFEEQEAPGT------------------RSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVA  376 (513)
Q Consensus       322 ----~~~~~~~~~~~------------------~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~  376 (513)
                          ..++.+.-+..                  ..-+......+.-++|++|..++++-.|   ..+.+||++. .+...
T Consensus       278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~a  356 (447)
T KOG4497|consen  278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHA  356 (447)
T ss_pred             ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhh
Confidence                00000000000                  0001112346778999999999999765   8899999985 33322


Q ss_pred             eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      .+ .....               |....|+|....|+.+.....+++|.+..  ....-.....-.|..+.|..+|..++
T Consensus       357 vL-iQk~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i~  418 (447)
T KOG4497|consen  357 VL-IQKHP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFIV  418 (447)
T ss_pred             hh-hhccc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcEEE
Confidence            22 22222               34889999998888887778899999874  33223333346788999999999998


Q ss_pred             eecCCCe
Q 010287          457 LGSLSGV  463 (513)
Q Consensus       457 ~~~~d~~  463 (513)
                      ..+.|..
T Consensus       419 l~~kDaf  425 (447)
T KOG4497|consen  419 LCGKDAF  425 (447)
T ss_pred             EEcCCce
Confidence            8877654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.3e-14  Score=139.63  Aligned_cols=296  Identities=14%  Similarity=0.176  Sum_probs=184.2

Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      -..+.|+|-.+  .++++...-.|+|||.+.++....+.....+.            ...+.+.+.          ...+
T Consensus      1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~------------t~Vs~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPD------------TRVSDLELI----------NEQD 1122 (1387)
T ss_pred             CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCC------------Cccceeeee----------cccc
Confidence            45677777554  77777767789999999887654333221110            001111111          1223


Q ss_pred             CCCCcCCCCCCceeceeeccCC-c----ccccceeeEeeccccCCeEEEEeccCCCEE-EEEcCCeEEEEEcCCCcceee
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQE-T----NLVAGCRRIYAHAHDYHINSISNNSDGETF-ISADDLRINLWNLEISNQSFN  268 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~-~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~d~~i~vwd~~~~~~~~~  268 (513)
                      ..+.++++.+|.|++|+-.... .    ........-...+..+.=.-+.|.....+| ++|+-..|+|||.........
T Consensus      1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence            3556788999999999764332 1    111111111111111111345677654444 455788999999997665543


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      +       ..+....|+++.-+-..+++|++|..||.|++||.|.... +..+..+..++..          .+|..+.+
T Consensus      1203 i-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~----------~~Iv~~sl 1264 (1387)
T KOG1517|consen 1203 I-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDV----------EPIVHLSL 1264 (1387)
T ss_pred             c-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCc----------ccceeEEe
Confidence            3       1234566777776554458999999999999999886543 1224444443321          23899999


Q ss_pred             eecCC-EEEEEe-CCeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          349 ARNGR-HILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       349 sp~~~-~l~~~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      .++|- .|++|+ +|.|++||++.+ ......+..|....+            ..+++..+++...+|+|+. +.|+||+
T Consensus      1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEEEEe
Confidence            88664 478876 599999999962 111122222221100            1458999999999999998 9999999


Q ss_pred             cCCCCccceeec-------CCCCceeEEEEcCCCCceeeecCCCeEEEe
Q 010287          426 CSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV  467 (513)
Q Consensus       426 ~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  467 (513)
                      +...  .+..++       .....+.+++|+|-.-.+|.|+.|..|.++
T Consensus      1332 ~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1332 LSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cChh--hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            8743  222222       234567899999999999999999999993

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.8e-15  Score=134.06  Aligned_cols=245  Identities=14%  Similarity=0.158  Sum_probs=158.6

Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ..++.||+            +.|++++|  +.+|.+|++||.|-.+.|||.-..+....                     
T Consensus        43 E~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kllhs---------------------   87 (758)
T KOG1310|consen   43 EAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHS---------------------   87 (758)
T ss_pred             hhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeee---------------------
Confidence            36788998            99999999  67999999999999999999976553332                     


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA  250 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~  250 (513)
                                                                            .-.+|...|.++.|-|  +.+++++|
T Consensus        88 ------------------------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sg  113 (758)
T KOG1310|consen   88 ------------------------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSG  113 (758)
T ss_pred             ------------------------------------------------------eecccccceeEEeeeccCCCeEEEec
Confidence                                                                  1258999999999998  46677787


Q ss_pred             -cCCeEEEEEcCCCcceeee--cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          251 -DDLRINLWNLEISNQSFNI--VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                       .|..|+++|+...+....-  ..........|...|..++-.|++++.|-++++||+|+-+|+|....+........  
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~--  191 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS--  191 (758)
T ss_pred             cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH--
Confidence             7999999999853211100  00001234678999999999999999999999999999999987544321110000  


Q ss_pred             cCCCCccccccccccEEEEEEeec-CCEEEEEe-CCeEEEEEccCCCCCeeeeeccccc----cccccccc---------
Q 010287          328 EAPGTRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL----RPKLCDLY---------  392 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~---------  392 (513)
                          ....+....-...++.++|. ..+|++|+ +-..++||.+...+....-..+...    -..+.-+.         
T Consensus       192 ----~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g  267 (758)
T KOG1310|consen  192 ----ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG  267 (758)
T ss_pred             ----HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence                00001111135788999995 45666665 5889999965311111110000000    00000000         


Q ss_pred             -ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          393 -ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       393 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                       ....+..++-+.|+|+|.-|+..-..-.|+++|+..++..
T Consensus       268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence             0011223567899999987776665668999999877444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.2e-15  Score=134.31  Aligned_cols=305  Identities=12%  Similarity=0.126  Sum_probs=207.1

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +...|.+|.            +.|+.|.|  ...|..|++++.|..|.+||+..+..+..                    
T Consensus       134 l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------------  179 (559)
T KOG1334|consen  134 LQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS--------------------  179 (559)
T ss_pred             hhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc--------------------
Confidence            444566777            99999999  55788999999999999999987653221                    


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEE
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFIS  249 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s  249 (513)
                                                                             |..+|...|....|-|  +.+.+++
T Consensus       180 -------------------------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  180 -------------------------------------------------------FESGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             -------------------------------------------------------cccccccchhhhhccCCCCCcCcee
Confidence                                                                   1346766677777766  3456666


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      + .||.+++=.+...+.....     ..+..|.++|..++.-|+.+..|.+++.|+.+.-+|++.+.......    ...
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~  275 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CRE  275 (559)
T ss_pred             ccccCceeeeeeccccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eec
Confidence            5 7999998877644433322     25677999999999999999999999999999999999876532211    111


Q ss_pred             CCCCccccccccccEEEEEEeecCC-EEEEEe-CCeEEEEEccCCCC-----CeeeeecccccccccccccccCCcccee
Q 010287          329 APGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSG-----PVATFQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                      ....      ..-....++..|... .+++|. +..+++||.+.-.+     ++..+..+.-.        . +....|+
T Consensus       276 ~~~~------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~--------~-d~~v~IT  340 (559)
T KOG1334|consen  276 ADEK------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV--------E-DDPVNIT  340 (559)
T ss_pred             cCCc------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc--------c-cCcccce
Confidence            1000      012578889999665 555554 58899999875111     12222211110        1 2333478


Q ss_pred             eEEEeCCCCEEEEEeCCCcEEEEecCCCC-----------c-cceeecCCCCc--eeEE-EEcCCCCceeeecCCCeEEE
Q 010287          402 ECCLSGDGGRVATGSYSNLFRVFGCSEGS-----------A-ESTTLEASKNP--MRRQ-VQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~-~~~~~~~~~~~--v~~~-~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +++|+.++.-|.++-.|-.|++++..-+.           . ...++++|.+.  |..+ .|-|...|+++|+..|.|.|
T Consensus       341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence            99999777666666667789999543221           1 12347788764  4344 45788999999999999999


Q ss_pred             ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                         |+....++.....+-..-|+||.=||--..||+++ +..|+||.
T Consensus       421 ---W~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  421 ---WDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             ---EecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence               54433233222222234799999999999999776 88899996

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=2.4e-14  Score=119.76  Aligned_cols=238  Identities=12%  Similarity=0.112  Sum_probs=166.0

Q ss_pred             cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ..+|+|.+|++|...++.+ ....|.||.....+. .+.    .+.+..|...|+.+.|+|.. +.|++|+.|..-.+|.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-w~~----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~   83 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-WEP----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT   83 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-cee----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence            3679999999999999999 788999999875442 221    14678899999999999998 8999999999999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe--eeee-ccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQ-VHEHLRP  386 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~-~~~~~~~  386 (513)
                      ...+..- +..-            .+..+....+++.|+|.+..+++|+. ..|.||-++.+..--  +.++ ....   
T Consensus        84 ~~~~~~W-kptl------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS---  147 (361)
T KOG1523|consen   84 QPSGGTW-KPTL------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS---  147 (361)
T ss_pred             cCCCCee-ccce------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc---
Confidence            8544321 1111            13345578999999999999999887 888998887422210  0110 1111   


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC-----------------CccceeecCCCCceeEEEEc
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQT  449 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~v~~~~~~  449 (513)
                                  .|++++|+|++-+|++|+.|+..+||..--.                 +++...+....+.+..+.|+
T Consensus       148 ------------tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs  215 (361)
T KOG1523|consen  148 ------------TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS  215 (361)
T ss_pred             ------------ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence                        2569999999999999999999999864211                 01112222456789999999


Q ss_pred             CCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287          450 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS  505 (513)
Q Consensus       450 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  505 (513)
                      |+|..|+-.+.|..+.+.....+.. ........ .-+.+++.|-.+...++.|-+
T Consensus       216 ~sG~~lawv~Hds~v~~~da~~p~~-~v~~~~~~-~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  216 PSGNRLAWVGHDSTVSFVDAAGPSE-RVQSVATA-QLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             CCCCEeeEecCCCceEEeecCCCch-hccchhhc-cCCceeeEeecCCceeecCCC
Confidence            9999999999999999933332220 00001111 256677777766655444433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=9.7e-16  Score=134.17  Aligned_cols=266  Identities=14%  Similarity=0.151  Sum_probs=195.2

Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      -+.+.|  +.+|.+++.++.-|.|-.+|+.++++...+.+.                                       
T Consensus       132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------------------------------------  170 (545)
T KOG1272|consen  132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------------------------------------  170 (545)
T ss_pred             Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence            456677  678999999999999999999998765432211                                       


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                                            ..|.++.|-.+.++|+++....++|||-. +..+.       
T Consensus       171 --------------------------------------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH-------  204 (545)
T KOG1272|consen  171 --------------------------------------ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH-------  204 (545)
T ss_pred             --------------------------------------hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe-------
Confidence                                                  23778889888999999999999999976 33332       


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  354 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  354 (513)
                       .+.. ...|..+.|-|.. .+|++++..|.++.-|+.+|+++..    +..            -.+.+..++-+|-+..
T Consensus       205 -Clk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~----~~t------------~~G~~~vm~qNP~NaV  265 (545)
T KOG1272|consen  205 -CLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS----IRT------------GAGRTDVMKQNPYNAV  265 (545)
T ss_pred             -ehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHH----HHc------------cCCccchhhcCCccce
Confidence             2233 3558899999998 8999999999999999999987432    222            2256777888898888


Q ss_pred             EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287          355 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES  433 (513)
Q Consensus       355 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  433 (513)
                      +-.|.. |+|.+|...+ .+++..+..|.+.++               ++++.++|+|++|.+.|..++|||++...++ 
T Consensus       266 ih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~---------------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-  328 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS---------------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-  328 (545)
T ss_pred             EEEcCCCceEEecCCCC-cchHHHHHhcCCCcc---------------eEEECCCCcEEeecccccceeEeeecccccc-
Confidence            888876 9999999987 788888888888744               9999999999999999999999999977433 


Q ss_pred             eeecCCCCceeEEEEcCCCCceeeecCCCeEEE----ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287          434 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL  508 (513)
Q Consensus       434 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~  508 (513)
                      .++.. .-+...+.+|..|  ++..+..-.+.|    ..+..  ..+.........+.|..+.|.|-...|-+|...++
T Consensus       329 ~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~--~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  329 HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSG--HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCC--CCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            33322 3445566666543  334445556666    11110  00111112223568999999999999998876665

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.3e-13  Score=109.47  Aligned_cols=246  Identities=12%  Similarity=0.133  Sum_probs=155.5

Q ss_pred             CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCc---ccccceeeEeeccccCCeEEEEeccCCCEEEEEcC
Q 010287          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQET---NLVAGCRRIYAHAHDYHINSISNNSDGETFISADD  252 (513)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d  252 (513)
                      .-+++|.++++            +.++..|.|.+..+.....   ....+..-....+|.+++..++|.  ...|++|.|
T Consensus        15 ~qa~sp~~~~l------------~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd   80 (325)
T KOG0649|consen   15 AQAISPSKQYL------------FAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD   80 (325)
T ss_pred             HHhhCCcceEE------------EEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC
Confidence            34677778776            8889999999988855432   222222222237999999999998  457888888


Q ss_pred             CeEEEEEcCCCcc---eeeecccCccccc--cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          253 LRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       253 ~~i~vwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      |.|+-|..+....   ...+++.++....  ..--.|+++-..|.. +-++.++.|+.+.-||+++|+.    .+.    
T Consensus        81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i----~r~----  151 (325)
T KOG0649|consen   81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI----QRE----  151 (325)
T ss_pred             ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE----EEE----
Confidence            9999998764332   1222222221000  012357889999988 6666677999999999999986    333    


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                              +.+|...+.++.--.....+++|+ ||++++||.++ ++.++.+...........   +.    +-+-.+..
T Consensus       152 --------~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp---~~----g~wigala  215 (325)
T KOG0649|consen  152 --------YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRP---DW----GKWIGALA  215 (325)
T ss_pred             --------EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhhcCc---cc----CceeEEEe
Confidence                    556678899998855455566665 59999999997 887777755443211000   00    01124555


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                      -+..+|++|+. ..+.+|++++.... .++ .-..++..+.|-.+  .+++++..+.|.
T Consensus       216 ~~edWlvCGgG-p~lslwhLrsse~t-~vf-pipa~v~~v~F~~d--~vl~~G~g~~v~  269 (325)
T KOG0649|consen  216 VNEDWLVCGGG-PKLSLWHLRSSEST-CVF-PIPARVHLVDFVDD--CVLIGGEGNHVQ  269 (325)
T ss_pred             ccCceEEecCC-CceeEEeccCCCce-EEE-ecccceeEeeeecc--eEEEecccccee
Confidence            56678887764 57999999976332 222 22344555555433  455555444433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=9e-14  Score=118.24  Aligned_cols=242  Identities=12%  Similarity=0.138  Sum_probs=152.0

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..+..++|++.-..++++ .|-.|++|+-.. . ....+     + ...+..|+|++|-|.+...|+.|+..| |.+|..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t-~pt~L-----k-s~sQrnvtclawRPlsaselavgCr~g-IciW~~  169 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKL-----K-SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-C-CCcee-----c-chhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence            347789999976677777 799999999775 2 21111     0 123567999999999878888877655 788976


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .......+.++....+.  .......+| .+|++++|.+||..+++++-  ..|.|||..+ +..+.......+.     
T Consensus       170 s~tln~~r~~~~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg-----  240 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG-----  240 (445)
T ss_pred             Ccccccccccccccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence            54322222222111110  011112334 68999999999999999763  8999999987 4433322111111     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC-CCCccceeecCCCCceeEEEEcCCCCceeeecC-CCeEEE-
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR-  466 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~-  466 (513)
                                +.-+.|||||.+|.+++-|+..++|+.. +..++.  .....+.|...+|+|.|++|+.... .-.+.- 
T Consensus       241 ----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl  308 (445)
T KOG2139|consen  241 ----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--WILGSGRVQTACWSPCGSFLLFACSGSPRLYSL  308 (445)
T ss_pred             ----------eeeEEEcCCCCEEEEecccceeeeehhcccceecc--eeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence                      3378999999999999999999999544 332222  2223348889999999998765432 222222 


Q ss_pred             -ecCCCCCc--------cccCCcc---------ccccCCeeEEEEeCCCCEEEEEc
Q 010287          467 -VKGADNSA--------LDANGNA---------FDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       467 -~~~~~~~~--------~~~~~~~---------~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                       ..+.....        ..+..+.         .-..+.+.+++|.|.|.+||+.-
T Consensus       309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence             11111110        0011110         11256889999999999999764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=1.8e-13  Score=116.89  Aligned_cols=232  Identities=15%  Similarity=0.200  Sum_probs=154.9

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcEEEEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLID  310 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~vwd  310 (513)
                      ..+..+.|+.+...|..|...--++|..+...+...        .......|..+-|+..   ++|..+.+  +.+++++
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~--------~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFS--------KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             cceeeeeeccceeEEEccCCCceeEEecCchHHhhc--------ccCCCeEEEEeecccc---eeEEEecCCCceEEEEE
Confidence            346677799998888888544467887775444321        1223445666667653   55554443  4588888


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++.+..+...  .|               ..+|.+|.++.  +.|+++-...|+|||++. .+++.++.........   
T Consensus        75 ~Kk~~~ICe~--~f---------------pt~IL~VrmNr--~RLvV~Lee~IyIydI~~-MklLhTI~t~~~n~~g---  131 (391)
T KOG2110|consen   75 FKKKTTICEI--FF---------------PTSILAVRMNR--KRLVVCLEESIYIYDIKD-MKLLHTIETTPPNPKG---  131 (391)
T ss_pred             cccCceEEEE--ec---------------CCceEEEEEcc--ceEEEEEcccEEEEeccc-ceeehhhhccCCCccc---
Confidence            8765543221  11               14688888863  455555555699999996 8888887655322221   


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEE--eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--  466 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--  466 (513)
                               +.++.+++.+.||+--  ...|.|.+||..+- +...++..|.+++.+++|+++|.+||++|..|+|..  
T Consensus       132 ---------l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  132 ---------LCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             ---------eEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence                     2255556666788843  35789999999876 445788899999999999999999999999998754  


Q ss_pred             -e-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          467 -V-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       467 -~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                       + .+.+..  ++....  .-..|.+++||||+++|++.+ .+++-||.
T Consensus       202 ~v~~G~kl~--eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  202 SVPEGQKLY--EFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             EcCCccEee--eeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence             2 222222  111111  145799999999999999666 77777774

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=3.2e-13  Score=132.25  Aligned_cols=269  Identities=14%  Similarity=0.181  Sum_probs=168.3

Q ss_pred             CCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287           86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG  165 (513)
Q Consensus        86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      |+|.......+..|.            ..|..++.++ +.+.+|++||.||+|++|+...-.....              
T Consensus      1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------- 1086 (1431)
T ss_pred             CCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcc--------------
Confidence            466666777777777            7888888864 3447999999999999999875321100              


Q ss_pred             CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287          166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  245 (513)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  245 (513)
                                                           .                 .+...++ ..-...+.++...+.+.
T Consensus      1087 -------------------------------------s-----------------~rS~lty-s~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1087 -------------------------------------S-----------------ARSELTY-SPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             -------------------------------------e-----------------eeeeEEE-eccCCceEEEEeccCCC
Confidence                                                 0                 0001111 11234578888889999


Q ss_pred             EEEEE-cCCeEEEEEcCCCcceee-ecccCccccccccCCeEEEEEeCCCCe-EEEEEeCCCcEEEEEcCCcccccccce
Q 010287          246 TFISA-DDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      .+|.+ .||.|.+.+++....... ....+..........+..-+|...... .++.+..-+.|..||+++....+.   
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--- 1188 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--- 1188 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh---
Confidence            99998 799999999875211110 000011122222233333344433324 788899999999999988654322   


Q ss_pred             eeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287          323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                       ++.          ....+.|++++.+|.+.+++.|+. |.+.+||++. +.++.........              ++.
T Consensus      1189 -lk~----------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~ 1242 (1431)
T KOG1240|consen 1189 -LKN----------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA--------------PIR 1242 (1431)
T ss_pred             -hhc----------CccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC--------------Ccc
Confidence             111          112278999999999999999987 9999999996 7777666433321              122


Q ss_pred             eEEEe---CCCCEEEEEe--CCCcEEEEecCCCCccceeecCC-------------------CCceeEEEEcCCCCceee
Q 010287          402 ECCLS---GDGGRVATGS--YSNLFRVFGCSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       402 ~~~~s---~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~  457 (513)
                      .++..   |...+.++++  ..+.|.+|++.++... .++-..                   .-+.....+...+.++.+
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence            34443   3344555444  5788999999988332 232211                   111223344445678899


Q ss_pred             ecCCCeEEE
Q 010287          458 GSLSGVVRR  466 (513)
Q Consensus       458 ~~~d~~i~~  466 (513)
                      |+.|..|+.
T Consensus      1322 ggsd~kIR~ 1330 (1431)
T KOG1240|consen 1322 GGSDMKIRK 1330 (1431)
T ss_pred             cCCccceee
Confidence            999999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.2e-13  Score=118.68  Aligned_cols=233  Identities=16%  Similarity=0.192  Sum_probs=162.5

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcEEEE
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLI  309 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~vw  309 (513)
                      ..|..++..  ...|++| ++|.+.+|....+..--.    ++..+.. ...+..+.-++..+.++++|+..  ..+++|
T Consensus       106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeeec-CCceeeeccCCCCCceEecCchhcccceeee
Confidence            334444433  3356667 899999999874431100    0012222 34567777788877888889999  899999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      |+.....      .|...+.+.... --.-.-+++++.|-+.  ...|++++. +.|++||.+...+|+..+...+..  
T Consensus       179 dle~~~q------iw~aKNvpnD~L-~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~--  249 (412)
T KOG3881|consen  179 DLEQSKQ------IWSAKNVPNDRL-GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP--  249 (412)
T ss_pred             eccccee------eeeccCCCCccc-cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--
Confidence            9987643      233322221100 0001136788899886  788999887 999999999878888888776655  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                   ++++...|+++++++|..-+.+..||++.++.....+++-.+.++.+..+|.++++|+++-|+.+||
T Consensus       250 -------------is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  250 -------------ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             -------------ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence                         4589999999999999999999999999885555668999999999999999999999999999999


Q ss_pred             ecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          467 VKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                         ++.....+.. ..-..+.++.+-+.++-+
T Consensus       317 ---hD~ktrkll~-kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  317 ---HDIKTRKLLH-KVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             ---eecccchhhh-hhhhhccccEEEecCCcc
Confidence               2221101111 111245667777766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.3e-13  Score=128.08  Aligned_cols=215  Identities=12%  Similarity=0.136  Sum_probs=132.8

Q ss_pred             ccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCCC-
Q 010287          231 HDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG-  304 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg-  304 (513)
                      +...+.+.+|+|||+.|+..    .+..|.+|++.+++.. .        +......+..+.|+||+ +.|+ +.+.+| 
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~--------l~~~~~~~~~~~~SPDG-~~La~~~~~~g~  266 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q--------VASFPRHNGAPAFSPDG-SKLAFALSKTGS  266 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E--------ccCCCCCcCCeEECCCC-CEEEEEEcCCCC
Confidence            33458889999999988864    2457999999865422 1        11122334568999999 5555 445555 


Q ss_pred             -cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc
Q 010287          305 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       305 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~  381 (513)
                       .|.+||+.++..     ..+.            .+...+....|+|||+.|+..++  +...||.+...+.....+...
T Consensus       267 ~~I~~~d~~tg~~-----~~lt------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~  329 (429)
T PRK03629        267 LNLYVMDLASGQI-----RQVT------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE  329 (429)
T ss_pred             cEEEEEECCCCCE-----EEcc------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence             588899887653     1111            11134678899999998887554  555555443223333333322


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ...               .....|+|||++|+..+.+   ..|++||+.++...  .+... .......|+|||+.|+..
T Consensus       330 ~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        330 GSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             CCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEEE
Confidence            211               1267899999998876543   35888999877432  22221 123467899999999998


Q ss_pred             cCCCeE---EE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          459 SLSGVV---RR--VKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       459 ~~d~~i---~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      +.++..   .+  .++....      ....|.+.+...+|+|-
T Consensus       392 s~~~~~~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        392 SSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EcCCCceEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence            877653   33  2222221      12236778899999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.2e-13  Score=125.02  Aligned_cols=169  Identities=15%  Similarity=0.175  Sum_probs=106.4

Q ss_pred             EEEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEE-
Q 010287          236 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI-  309 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vw-  309 (513)
                      ..++|+|||+.|+..  .++  .|++||+.++...         .+..+...+....|+|++ +.|+..+. ++...+| 
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEE
Confidence            357899999988864  243  5889999865422         223334457789999999 66665554 4555555 


Q ss_pred             -EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccccc
Q 010287          310 -DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       310 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                       |+.++..     ..+..            .........|+|||++|+... +   ..|.+||+.. +. ...+.... .
T Consensus       316 ~d~~~g~~-----~~lt~------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~  375 (429)
T PRK03629        316 VNINGGAP-----QRITW------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L  375 (429)
T ss_pred             EECCCCCe-----EEeec------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C
Confidence             5544432     11111            112355688999999988743 2   4688889875 33 33332111 0


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCCCc---EEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                                     .....|+|||++|+.++.++.   ++++++..  .....+..|...+...+|+|-
T Consensus       376 ---------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        376 ---------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ---------------CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence                           115789999999998887664   67777753  333556667777777778763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=2.9e-14  Score=125.05  Aligned_cols=298  Identities=14%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             CCcccccccccccccceeccccccccc----cc------cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccC
Q 010287            6 GSSEAAAQPLEWKFSQVFGERTAGEEV----QE------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR   75 (513)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~----~h------~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~   75 (513)
                      |..++......|++.|-  +-....++    .|      .-.-..+.++.+|++|+.|+..|.|..+|+.+....     
T Consensus        92 G~le~e~~EkT~~v~Q~--~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-----  164 (545)
T KOG1272|consen   92 GYLEAEGLEKTYKVRQD--DIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-----  164 (545)
T ss_pred             CcccccCCcceeeeEHh--hhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee-----
Confidence            45566677788888763  11111111    11      234467888999999999999999999999887752     


Q ss_pred             ccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287           76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (513)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~  155 (513)
                                        .++.             ....|.++.|..  +..+ ++....+.+.|||-...++-++.+  
T Consensus       165 ------------------~Ei~-------------v~Etv~Dv~~LH--neq~-~AVAQK~y~yvYD~~GtElHClk~--  208 (545)
T KOG1272|consen  165 ------------------FEIN-------------VMETVRDVTFLH--NEQF-FAVAQKKYVYVYDNNGTELHCLKR--  208 (545)
T ss_pred             ------------------eeee-------------hhhhhhhhhhhc--chHH-HHhhhhceEEEecCCCcEEeehhh--
Confidence                              2222             226799999964  4334 445567789999976655433211  


Q ss_pred             cCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe
Q 010287          156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI  235 (513)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v  235 (513)
                                                                                                 | ..|
T Consensus       209 ---------------------------------------------------------------------------~-~~v  212 (545)
T KOG1272|consen  209 ---------------------------------------------------------------------------H-IRV  212 (545)
T ss_pred             ---------------------------------------------------------------------------c-Cch
Confidence                                                                                       1 347


Q ss_pred             EEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          236 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      ..+.|-|..=+|+++ ..|-++.-|+.+++...        .+....+.+..++-+|-+ -.+-+|...|+|.+|.....
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa--------~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA--------SIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeechhhhhH--------HHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCc
Confidence            788899987777777 69999999999887654        334456778889999987 88999999999999998776


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE  393 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      +...+                +..|.++|.+|++.++|+|+++.+ |..++|||+++ ...+.++.....          
T Consensus       284 ePLvK----------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~-~~ql~t~~tp~~----------  336 (545)
T KOG1272|consen  284 EPLVK----------------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN-FYQLHTYRTPHP----------  336 (545)
T ss_pred             chHHH----------------HHhcCCCcceEEECCCCcEEeecccccceeEeeecc-ccccceeecCCC----------
Confidence            55322                345678999999999999999855 69999999997 444444433111          


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEec-CCCC-ccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC-SEGS-AESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~-~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                            ...+++|..|  +++.+....+.+|.- -.+. .....+-.  -..+|..+.|.|-...|-.|-..|.-.+
T Consensus       337 ------a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  337 ------ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             ------cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence                  1267788665  334455567999943 2211 11111112  2358899999998888877766666555

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.2e-11  Score=111.71  Aligned_cols=312  Identities=9%  Similarity=0.091  Sum_probs=180.5

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ..+++..++|++|+++|.+.. ..++|++......                      ....+.               ..
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~----------------------~lt~~~---------------~~   75 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV----------------------VLCVEL---------------KK   75 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE----------------------EEEecc---------------ce
Confidence            344788899999999998764 4799999766532                      111111               24


Q ss_pred             ceeEEEeecCCCceEEEe-----ecC-----CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          115 INKIRWCQSANSALYLLS-----TND-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~-----s~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                      ++++.|+|  .+.+|.+-     ..+     ..+++|+++++............              .+ .+.|++|..
T Consensus        76 ~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--------------~W-~~qfs~dEs  138 (566)
T KOG2315|consen   76 TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--------------GW-VPQFSIDES  138 (566)
T ss_pred             eeeeeecc--cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--------------Cc-ccccccchh
Confidence            78888865  55566551     122     34779999885433222221111              01 234444433


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEE---E---cCCeEE
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS---A---DDLRIN  256 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s---~---~d~~i~  256 (513)
                      .             +.--..+.+.+++...-...        .-.-|...|..+.++|.+  ..+++   +   .-..++
T Consensus       139 l-------------~arlv~nev~f~~~~~f~~~--------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr  197 (566)
T KOG2315|consen  139 L-------------AARLVSNEVQFYDLGSFKTI--------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR  197 (566)
T ss_pred             h-------------hhhhhcceEEEEecCCccce--------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence            2             22234556777776552221        123456778889998863  34443   1   256799


Q ss_pred             EEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC--CC---------cEEEEEcCCcccccccceeec
Q 010287          257 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KG---------SIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       257 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg---------~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      +|...... ....+..  ..+  ....=..+.|++-+..+|+.++.  |.         .+++.++. +..     ..+.
T Consensus       198 i~~~~~~~-~~~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-----~~V~  266 (566)
T KOG2315|consen  198 IYKYPEEG-QHQPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-----VSVP  266 (566)
T ss_pred             Eecccccc-ccchhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-----EEEe
Confidence            99876222 1111100  011  12223467788877555554443  32         45555554 211     1111


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                      ..           -.++|.++.|+|+++.+++..  . ..+.|||++  +.++..+....  ++               .
T Consensus       267 L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egp--RN---------------~  316 (566)
T KOG2315|consen  267 LL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGP--RN---------------T  316 (566)
T ss_pred             cC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCC--cc---------------c
Confidence            11           127899999999998877743  3 899999998  77776664322  22               7


Q ss_pred             EEEeCCCCEEEEEeC---CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          403 CCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       403 ~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +-|+|.|++|+.++-   .|.|-|||..+. +.+..++...  -.-+.|+|||.+++++...=.+|+
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence            889999999987764   588999999985 4434443322  234567777777777654444444

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=4.1e-11  Score=100.69  Aligned_cols=161  Identities=11%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~vwd~  311 (513)
                      .+|.++.+.++  .|++.-++.|+||.+...-+....++..    . ......+++-+.+. .+||. |-.-|.|+|-|+
T Consensus        95 ~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL  166 (346)
T KOG2111|consen   95 SEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDL  166 (346)
T ss_pred             cceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeecCCCCc-eEEEcCCCccceEEEEEh
Confidence            55888888765  6777778999999987443333322211    1 11123333322232 34443 334689999998


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ......              +..++..|.+.|.|++++-+|..+|+++. | -|+|||..+ +..+.+++......    
T Consensus       167 ~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A----  227 (346)
T KOG2111|consen  167 ASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA----  227 (346)
T ss_pred             hhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh----
Confidence            764431              12346778899999999999999999886 4 579999997 88888775433221    


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                               .+.+++|||+..+|+++|+.|+++||.++..
T Consensus       228 ---------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 ---------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ---------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                     2559999999999999999999999998754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.4e-12  Score=117.75  Aligned_cols=198  Identities=13%  Similarity=0.174  Sum_probs=134.4

Q ss_pred             EEEecc-CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287          237 SISNNS-DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  315 (513)
Q Consensus       237 ~~~~~~-~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  315 (513)
                      .++++. ...+++.|....|+-++++.+.-+-        .+......++++..++.. .+|++|+.+|.|..||.+...
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEcccccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhh
Confidence            344443 4556666677788889998665432        344456889999999988 899999999999999999876


Q ss_pred             cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccccccc
Q 010287          316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN  394 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      .+..    ++....-.. .........|+++.|+.+|-.+++|+. |.+.|||++. .+++..- -|....         
T Consensus       209 rv~~----l~~~~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~k-dh~~e~---------  272 (703)
T KOG2321|consen  209 RVGT----LDAASSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLVK-DHGYEL---------  272 (703)
T ss_pred             hhee----eecccccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEccc-CCceeec-ccCCcc---------
Confidence            6432    222111000 001112246999999999999999986 9999999997 5555432 333321         


Q ss_pred             CCccceeeEEEeCC--CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          395 DSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       395 ~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                          +|..+.|.+.  ++.|++. +...++|||-.+++. ...++. ...++.+++-|++..+.++..+..+..
T Consensus       273 ----pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  273 ----PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ----ceeeecccccCCCceEEec-chHHhhhcccccCCc-eeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence                1447788665  3455544 456899999998843 344443 334889999999999999887766554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=2.1e-11  Score=112.14  Aligned_cols=292  Identities=12%  Similarity=0.095  Sum_probs=160.4

Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      ..+.|  ++|++++++++.||.|.++|+.+++........                                        
T Consensus        40 ~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----------------------------------------   77 (369)
T PF02239_consen   40 AGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----------------------------------------   77 (369)
T ss_dssp             EEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------------------------------------
T ss_pred             eEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------------------------------------
Confidence            34567  568889999999999999999998755432211                                        


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccC
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                           ....++++++||++++++  ..+.+.++|.++.+....+- ..
T Consensus        78 -------------------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~-~~  119 (369)
T PF02239_consen   78 -------------------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP-TG  119 (369)
T ss_dssp             -------------------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---
T ss_pred             -------------------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc-cc
Confidence                                                 225789999999999987  49999999998766544331 10


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                      ..........+..+..+|..+.++++.-..+.|.+-|........  .+.++..             .......|+|+++
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~g-------------~~~~D~~~dpdgr  184 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKVG-------------RFPHDGGFDPDGR  184 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSS
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeeccc-------------ccccccccCcccc
Confidence            001111345678888888884455555556888888876643211  1222221             3567889999999


Q ss_pred             EEEEEe-C-CeEEEEEccCCCCCeeeeeccccc-ccccccccccCCccceeeEEEe--CCCCEEEEEeCCCcEEEEecCC
Q 010287          354 HILSRD-Y-MTLKLWDINMDSGPVATFQVHEHL-RPKLCDLYENDSIFDKFECCLS--GDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       354 ~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      +++++. . ..|-++|.+. ++.+..+...... ......+.+..     ....|.  ..+...++.-....+.+||..+
T Consensus       185 y~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             eeeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhc
Confidence            988754 3 8999999885 5554443321111 00011111110     012232  2233333333334566788887


Q ss_pred             CCccceeecCCCCceeEEEEcCCCCceeee----cCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEeCCCCEEEEE
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~  503 (513)
                      . +....++....+ .-+..+|+++++...    ...+.|.+++...+.   ...... .-...+.++.|++||+.+-++
T Consensus       259 w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  259 W-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             T-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             C-eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCEEEEE
Confidence            6 445667766666 677889999999887    445777774444332   111110 112359999999999986644


Q ss_pred             c--CC-cEEEEeC
Q 010287          504 A--SN-SLYMYYA  513 (513)
Q Consensus       504 ~--~~-~~~i~~~  513 (513)
                      .  .+ .+.+|.+
T Consensus       334 ~~~~~~~i~v~D~  346 (369)
T PF02239_consen  334 VWDGNGAIVVYDA  346 (369)
T ss_dssp             EE--TTEEEEEET
T ss_pred             EecCCCEEEEEEC
Confidence            3  44 6888864

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.4e-12  Score=122.01  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=120.9

Q ss_pred             cccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          230 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .|...+.+.+|+|||+.|+..    .+..|.+||+.++...         .+..+...+....|+|+|..++++.+.++.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence            455668899999999988875    2578999999866532         223345567788999999444556666665


Q ss_pred             --EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeee
Q 010287          306 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       306 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~  379 (513)
                        |.+||+.++..     +.+.            .+........|+|||+.|+..++    ..|+++|+.  +...+.+.
T Consensus       270 ~~Iy~~d~~~~~~-----~~Lt------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt  330 (435)
T PRK05137        270 TDIYTMDLRSGTT-----TRLT------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRIS  330 (435)
T ss_pred             ceEEEEECCCCce-----EEcc------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEee
Confidence              66678776653     1111            12234567899999998887553    367777765  33334443


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      .....               +....|+|||++|+..+.+   ..|.+||+..+...  .+.. ...+....|+|+|+.|+
T Consensus       331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence            22211               1257899999999876543   36888888654322  2221 22456789999999987


Q ss_pred             eecC
Q 010287          457 LGSL  460 (513)
Q Consensus       457 ~~~~  460 (513)
                      ..+.
T Consensus       393 ~~~~  396 (435)
T PRK05137        393 FFRQ  396 (435)
T ss_pred             EEEc
Confidence            6544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.1e-12  Score=124.74  Aligned_cols=219  Identities=13%  Similarity=0.110  Sum_probs=131.9

Q ss_pred             cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .+...+.+.+|+|||+.|+.. .   ...|.+||+.++... .        +......+....|+||+..++++.+.+|.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~--------l~~~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V--------VANFKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E--------eecCCCCccceEECCCCCEEEEEEccCCC
Confidence            344567889999999998875 2   346999999866532 1        12223445688999999444456777888


Q ss_pred             EEEEEcC--CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc
Q 010287          306 IRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       306 i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      ..+|.+.  .+..     +.+.            .+.+......|+|||+.|+..++  +...+|.+...+.....+...
T Consensus       264 ~~Iy~~d~~~~~~-----~~lt------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~  326 (427)
T PRK02889        264 SQIYTVNADGSGL-----RRLT------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT  326 (427)
T ss_pred             ceEEEEECCCCCc-----EECC------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence            7777653  3221     1111            12233556789999998886553  667777665323333333222


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ...               .....|+|||++|+..+.++   .|++||+.++...  .+... .......|+|+++.|+..
T Consensus       327 g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        327 GSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYILYA  388 (427)
T ss_pred             CCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEEEE
Confidence            111               11578999999998766544   6999999877433  22222 234577999999998887


Q ss_pred             cCCCe-EEE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          459 SLSGV-VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       459 ~~d~~-i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      +.++. -.+  .......    ......+.+.+...+|+|-
T Consensus       389 ~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        389 TQQGGRSVLAAVSSDGRI----KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EecCCCEEEEEEECCCCc----eEEeecCCCCCCCCccCCC
Confidence            65442 222  1111100    0011123567788888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.5e-12  Score=124.30  Aligned_cols=216  Identities=15%  Similarity=0.155  Sum_probs=129.9

Q ss_pred             cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-
Q 010287          230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-  304 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-  304 (513)
                      .+...+.+.+|+|+++.|+.. .   +..|++||+.++...         .+........++.|+|++..++++.+.+| 
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------LVASFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence            344557889999999988875 2   356999999865432         11222334457899999944555666666 


Q ss_pred             -cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--Ce--EEEEEccCCCCCeeeee
Q 010287          305 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATFQ  379 (513)
Q Consensus       305 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~--v~iwd~~~~~~~~~~~~  379 (513)
                       .|.+||+.++..     +.+.            .+.......+|+|||+.|+..++  +.  |+++|+.. ++ ...+.
T Consensus       272 ~~Iy~~d~~~g~~-----~~lt------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt  332 (433)
T PRK04922        272 PEIYVMDLGSRQL-----TRLT------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERLT  332 (433)
T ss_pred             ceEEEEECCCCCe-----EECc------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEee
Confidence             588899887653     1111            11133466899999998887654  44  55556553 32 33332


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      .....               ....+|+|||++|+..+.++   .|.+||+.++...  .+.. ........|+|+|+.++
T Consensus       333 ~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~-~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        333 FQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLTP-GSLDESPSFAPNGSMVL  394 (433)
T ss_pred             cCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECCC-CCCCCCceECCCCCEEE
Confidence            22111               12579999999998765432   6899999876433  2222 22344678999999887


Q ss_pred             eecCC-Ce--EEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          457 LGSLS-GV--VRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       457 ~~~~d-~~--i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      ..+.+ +.  +.+.......    ......+.+.+...+|+|
T Consensus       395 ~~s~~~g~~~L~~~~~~g~~----~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        395 YATREGGRGVLAAVSTDGRV----RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEecCCceEEEEEECCCCc----eEEcccCCCCCCCCccCC
Confidence            76653 33  3332111100    001112345677788887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=9.8e-13  Score=109.62  Aligned_cols=147  Identities=19%  Similarity=0.336  Sum_probs=101.0

Q ss_pred             EEEeccCCCEEEEE-c---C-------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE--EeCC
Q 010287          237 SISNNSDGETFISA-D---D-------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSK  303 (513)
Q Consensus       237 ~~~~~~~~~~l~s~-~---d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~d  303 (513)
                      .+.|+++|++|+.- .   |       +...+|.++..+.....+     .+. ..++|.+++|+|++ +.|+.  |..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence            57899999888753 2   1       335566654333333221     222 24569999999999 55443  4467


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeee
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~  379 (513)
                      +.|.+||++. +.    +..+..              ..+..+.|+|+|++|++++  .  |.|.+||++. .+.+....
T Consensus        83 ~~v~lyd~~~-~~----i~~~~~--------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~  142 (194)
T PF08662_consen   83 AKVTLYDVKG-KK----IFSFGT--------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE  142 (194)
T ss_pred             cccEEEcCcc-cE----eEeecC--------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc
Confidence            8999999962 22    233321              4578899999999999865  2  7899999985 66655543


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeC------CCcEEEEecC
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS  427 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~  427 (513)
                      ...                 ++.++|+|||++|++++.      |+.++||+..
T Consensus       143 ~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  143 HSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            222                 348999999999998764      7889999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=4.7e-12  Score=120.85  Aligned_cols=169  Identities=13%  Similarity=0.165  Sum_probs=100.9

Q ss_pred             eEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCc--EE
Q 010287          235 INSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IR  307 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--i~  307 (513)
                      ..+.+|+|+|+.|+..  .+  ..|++||+.++.. .        .+..+......++|+|++ +.|+..+ .+|.  |.
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~--------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T--------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIY  319 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEE
Confidence            3467899999877643  33  4699999986542 2        223344445678999999 6666555 4555  55


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeecccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      ++|+.++...  .+ ++.+              ......+|+|||++|+..+ +   ..|.+||+.. ++.. .+.... 
T Consensus       320 ~~dl~~g~~~--~l-t~~g--------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-  379 (433)
T PRK04922        320 RVAASGGSAE--RL-TFQG--------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPGS-  379 (433)
T ss_pred             EEECCCCCeE--Ee-ecCC--------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCCC-
Confidence            5565554321  01 1111              2344689999999998743 2   3689999874 4332 332111 


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                      .               .....|+|||++|+..+.+   +.|+++++..+  ....+..+...+...+|+|
T Consensus       380 ~---------------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        380 L---------------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence            1               1157899999988866643   45777777533  3344444444455555654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=5.2e-12  Score=120.10  Aligned_cols=172  Identities=12%  Similarity=0.172  Sum_probs=98.7

Q ss_pred             eEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEc
Q 010287          235 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~  311 (513)
                      +.+.+|+|||+.|+. . .++...+|.++.......       .+..+........|+||| +.|+..+ .+|...+|.+
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence            456889999998875 3 477666665432221111       233344455678899999 6555444 4567777765


Q ss_pred             C--CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeecccccc
Q 010287          312 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       312 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      .  ++..  +.+ .+.+              .......|+|||++|+..+.    ..|.+||+.. ++. ..+.... . 
T Consensus       314 ~~~~g~~--~~l-t~~g--------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~-  372 (427)
T PRK02889        314 PASGGAA--QRV-TFTG--------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-R-  372 (427)
T ss_pred             ECCCCce--EEE-ecCC--------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-C-
Confidence            4  3221  001 1111              12345789999999987543    3699999875 433 2332111 1 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                                    .....|+|||++|+..+.++   .+++.++. + .....+..+...+...+|+|-
T Consensus       373 --------------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        373 --------------DESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             --------------ccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence                          11678999999988776443   35555553 2 333444444455555666653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=2.9e-12  Score=110.37  Aligned_cols=166  Identities=14%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             eEEEEeccCCCEEEE-E-cC--CeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCC--CCeEEEEEeCCCcEE
Q 010287          235 INSISNNSDGETFIS-A-DD--LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPT--HCNMLAYSSSKGSIR  307 (513)
Q Consensus       235 v~~~~~~~~~~~l~s-~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~l~~~~~dg~i~  307 (513)
                      +..+.-++....|++ | ..  ..+.+||++..++.++-..+++..+.- -.-+++++.|-+.  . +.|++++.-+.++
T Consensus       151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR  229 (412)
T KOG3881|consen  151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVR  229 (412)
T ss_pred             eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEE
Confidence            444555555445554 5 35  789999999776665544333322211 1345678889876  5 8999999999999


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee-eecccccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLR  385 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~-~~~~~~~~  385 (513)
                      +||.+.++.   ++..++-.+            .+++++...|++.++++|+. +.+..||++. ++.+.. +.+-.+. 
T Consensus       230 ~YDt~~qRR---PV~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGs-  292 (412)
T KOG3881|consen  230 LYDTRHQRR---PVAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGS-  292 (412)
T ss_pred             EecCcccCc---ceeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCC-
Confidence            999987653   244444333            57999999999999999987 9999999996 554443 5555544 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                    +.++..+|..++|++++-|..+||+|+++.+.+
T Consensus       293 --------------irsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  293 --------------IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             --------------cceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence                          348889999999999999999999999986333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=4.5e-13  Score=119.88  Aligned_cols=188  Identities=13%  Similarity=0.127  Sum_probs=129.2

Q ss_pred             cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc----
Q 010287          242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL----  316 (513)
Q Consensus       242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----  316 (513)
                      +.+--++.| .-|.+++.|... .....++..   ...-....++|+.|-|.+...|+.+-.+|.+.+||......    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p  258 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP  258 (636)
T ss_pred             CCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence            456667777 789999888764 222221111   11113478999999998878999999999999998642110    


Q ss_pred             cccc--------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccc
Q 010287          317 CDTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       317 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      ....        +.+........+...+.--.+.|..++|+|||++||+.+ ||.++|||..+ .+.+..++..-+.   
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGG---  334 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGG---  334 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccc---
Confidence            0000        001111111111112222335889999999999999966 59999999986 5555444333322   


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                                  .++++|||||+||++|++|..|.||.+... +.+..-.+|..+|..++|.|
T Consensus       335 ------------LLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  335 ------------LLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ------------eEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence                        459999999999999999999999999866 55577789999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=7.1e-10  Score=95.53  Aligned_cols=206  Identities=17%  Similarity=0.151  Sum_probs=136.0

Q ss_pred             EEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCC----------eEEEEEeCCCCeEEEEEeC-
Q 010287          236 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS-  302 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~-  302 (513)
                      ..+++++++++++++  ..|.|.++-++....+...++     +..|.+.          +....+.|++ +++++... 
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG  165 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG  165 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence            678999999999998  589999999976554433321     1222222          8899999999 66666554 


Q ss_pred             CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeec
Q 010287          303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~  380 (513)
                      -..|.+|++..+.+.......++.             ...-+.|.|+|++++...-.+  ++|.+|........+..++.
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             CceEEEEEcccCccccccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence            568999999977654322222211             145688999999999988765  99999999864344455444


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCcccee---ecCCCCceeEEEEcCCCCcee
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTT---LEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      +........   ...   ..-++.+++||++|.++. ....|.+|.+......+..   ...+...-+...+++.+++|+
T Consensus       233 i~tlP~dF~---g~~---~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         233 IDTLPEDFT---GTN---WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             eccCccccC---CCC---ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            332211111   011   123789999999999876 3457888887654333222   223344467899999999998


Q ss_pred             eecCCC-eEEE
Q 010287          457 LGSLSG-VVRR  466 (513)
Q Consensus       457 ~~~~d~-~i~~  466 (513)
                      .+..++ .+.+
T Consensus       307 aa~q~sd~i~v  317 (346)
T COG2706         307 AANQKSDNITV  317 (346)
T ss_pred             EEccCCCcEEE
Confidence            887653 3444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=3.8e-12  Score=106.13  Aligned_cols=139  Identities=13%  Similarity=0.228  Sum_probs=86.9

Q ss_pred             EEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          285 TSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      ..+.|+|+|..+++....         -+...+|.++.....   ...+..           ...++|.+++|+|+|..+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l-----------~~~~~I~~~~WsP~g~~f   74 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIEL-----------KKEGPIHDVAWSPNGNEF   74 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeec-----------cCCCceEEEEECcCCCEE
Confidence            467899998555554441         234455555332211   111111           122569999999999987


Q ss_pred             EEE--eC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---CCcEEEEecCCC
Q 010287          356 LSR--DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEG  429 (513)
Q Consensus       356 ~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~  429 (513)
                      ++.  .. ..|.+||++  .+.+..+....                 +..+.|+|+|++|++++.   .|.|.+||.++.
T Consensus        75 avi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   75 AVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             EEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            653  33 899999997  56666654222                 237999999999998874   467999999955


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeec
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  459 (513)
                      + .+...+  ...+..+.|+|+|++++++.
T Consensus       136 ~-~i~~~~--~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  136 K-KISTFE--HSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             E-Eeeccc--cCcEEEEEEcCCCCEEEEEE
Confidence            2 222222  22345667777777776664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=8e-10  Score=102.09  Aligned_cols=215  Identities=14%  Similarity=0.126  Sum_probs=127.1

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc------CccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ...++++|++++|+++  .+|.|.++++............      .+...........++.++|++..++++.-....|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            4578899999999998  5999999999875433332110      0111112345678999999994444444446789


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      .+|++............+..+.           ....+.+.|+|++++++...+  +.|.+|++......+.....-...
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~-----------G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPP-----------GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECST-----------TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEEEeCCCceEEEeecccccc-----------CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            9999876542111112222211           145788999999999988664  999999998322222222111100


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCC-Cccc--eeecCCCCceeEEEEcCCCCceeeec-
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG-SAES--TTLEASKNPMRRQVQTPSRPSRPLGS-  459 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-  459 (513)
                      ...    +...  .....+.++|||++|+++. .++.|.+|++... +.+.  ..+.......+.+.++|+|++|+++. 
T Consensus       238 ~~~----~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  238 PEG----FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             ETT----SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             ccc----cccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            000    0000  0123799999999988765 5678999999432 1221  23333344478999999999998775 


Q ss_pred             CCCeEEE
Q 010287          460 LSGVVRR  466 (513)
Q Consensus       460 ~d~~i~~  466 (513)
                      .++.|.+
T Consensus       312 ~s~~v~v  318 (345)
T PF10282_consen  312 DSNTVSV  318 (345)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEE
Confidence            4455555

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=1.5e-11  Score=113.17  Aligned_cols=288  Identities=12%  Similarity=0.103  Sum_probs=165.0

Q ss_pred             EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      ..+.|+|||+++.+.+.||.|.++|+.+.+.+                       .++.             .......+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v-----------------------~~i~-------------~G~~~~~i   83 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV-----------------------ATIK-------------VGGNPRGI   83 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE-----------------------EEEE--------------SSEEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEE-----------------------EEEe-------------cCCCcceE
Confidence            44779999999999999999999998776642                       2222             12446778


Q ss_pred             EEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          119 RWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       119 ~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      +++  +||++++++ ..++.+.++|.++.+..........+                                       
T Consensus        84 ~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------------  122 (369)
T PF02239_consen   84 AVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------------  122 (369)
T ss_dssp             EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE----------------------------------------
T ss_pred             EEc--CCCCEEEEEecCCCceeEeccccccceeeccccccc---------------------------------------
Confidence            884  588898887 46899999999987765543221100                                       


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                    .......+.++..++....++..  +.+.|.+.|....+....       
T Consensus       123 ------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------  165 (369)
T PF02239_consen  123 ------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------  165 (369)
T ss_dssp             ------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------
T ss_pred             ------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------
Confidence                                          00122446778788888866665  568888888775543321       


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE-------EE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI-------KF  348 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-------~~  348 (513)
                      .............|+|++..++++...+..|-++|..+++..    ..++....+        |..+...+       .|
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v----~~i~~g~~p--------~~~~~~~~php~~g~vw  233 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV----ALIDTGKKP--------HPGPGANFPHPGFGPVW  233 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE----EEEE-SSSB--------EETTEEEEEETTTEEEE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccceEE----EEeeccccc--------cccccccccCCCcceEE
Confidence            112234557789999999445565677889999999887652    222221111        11122211       12


Q ss_pred             e--ecCCEEEE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE----eCCCcE
Q 010287          349 A--RNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLF  421 (513)
Q Consensus       349 s--p~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i  421 (513)
                      .  ..+...++ -+...+.+||... .+.++.+.......                -+..+|+++++.+.    ...+.|
T Consensus       234 ~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~gl----------------Fi~thP~s~~vwvd~~~~~~~~~v  296 (369)
T PF02239_consen  234 ATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGGL----------------FIKTHPDSRYVWVDTFLNPDADTV  296 (369)
T ss_dssp             EEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-E
T ss_pred             eeccccceecccccCCccccchhhc-CeEEEEEECCCCcc----------------eeecCCCCccEEeeccCCCCCceE
Confidence            2  22333322 1224555677775 77788777654431                47889999999987    456899


Q ss_pred             EEEecCCCCccceeec-CCCCceeEEEEcCCCCceeeecC--CCeEEEecCC
Q 010287          422 RVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSL--SGVVRRVKGA  470 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~~~~  470 (513)
                      .++|.++. +...++. .....+..+.|+++|+.+.....  ++.|.+++..
T Consensus       297 ~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  297 QVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             EEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             EEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            99999977 3334443 23345889999999997655443  3357774433

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=3.3e-12  Score=114.46  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=146.3

Q ss_pred             eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE-----eCCCCeEEEEEeCCCcEEEE
Q 010287          235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~l~~~~~dg~i~vw  309 (513)
                      +....++-.|.+|+-.-...+++|+.+.+.....-++.  ..+.  ....+|=.|     .|.+ --++.+-.-|.+.+.
T Consensus       126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~--gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYK--GTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI  200 (636)
T ss_pred             eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hccc--CCCCceecccccccCCCC-cceEEeeccCceEEe
Confidence            34444555677887765677899988843332221110  1111  112233333     3444 557778888999998


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCC---C-e------ee
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSG---P-V------AT  377 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~---~-~------~~  377 (513)
                      |....+.    .+.+.....        -.+..++++.|-|.+.  ++++=.+|.+++||......   + .      ..
T Consensus       201 dp~~~~~----sklfne~r~--------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~  268 (636)
T KOG2394|consen  201 DPINFEV----SKLFNEERL--------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ  268 (636)
T ss_pred             cchhhHH----HHhhhhccc--------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence            8766322    111221110        0125799999999443  33333459999998643100   0 0      01


Q ss_pred             eeccc-----ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287          378 FQVHE-----HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR  452 (513)
Q Consensus       378 ~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  452 (513)
                      +..+.     ...+..+......   .+...+|+|||++||+.+.||.++|||..+. +++..++.......+++|+|||
T Consensus       269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG  344 (636)
T KOG2394|consen  269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG  344 (636)
T ss_pred             eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence            11111     0000011111112   3558999999999999999999999999965 5556777778889999999999


Q ss_pred             CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          453 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       453 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      +|+++|++|--|.+   |............+|.+.|..++|.|
T Consensus       345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence            99999999999999   54443334445557899999999996

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=6.2e-10  Score=95.88  Aligned_cols=293  Identities=13%  Similarity=0.183  Sum_probs=180.5

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecC---CCcEEEEEeeC--CCCCCCccCccccccccccCC
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRH   87 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~   87 (513)
                      .-..|++..--|+....+.+.+.+.++-++|+|++++|.++-.   +|.|.-|.+..  +...                 
T Consensus        17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------------   79 (346)
T COG2706          17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------------   79 (346)
T ss_pred             ceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-----------------
Confidence            3456777644466677778888999999999999999888764   46788888764  3321                 


Q ss_pred             CcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccC-ceeeeeeccccCCCcccCCC
Q 010287           88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNG  165 (513)
Q Consensus        88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~  165 (513)
                        +.-.....++.              -+-++.  ++++++++++.. -|.|.++.++. |.+........+.+      
T Consensus        80 --~ln~~~~~g~~--------------p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g------  135 (346)
T COG2706          80 --FLNRQTLPGSP--------------PCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG------  135 (346)
T ss_pred             --EeeccccCCCC--------------CeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC------
Confidence              01111222322              366777  668889988854 68899998865 43332211111100      


Q ss_pred             CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287          166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  245 (513)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  245 (513)
                                        .                                .   ...     ......+....+.|+++
T Consensus       136 ------------------~--------------------------------~---p~~-----rQ~~~h~H~a~~tP~~~  157 (346)
T COG2706         136 ------------------S--------------------------------G---PHE-----RQESPHVHSANFTPDGR  157 (346)
T ss_pred             ------------------C--------------------------------C---CCc-----cccCCccceeeeCCCCC
Confidence                              0                                0   000     01112366788999999


Q ss_pred             EEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCCCcEEEEEcCCcccccccce
Q 010287          246 TFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       246 ~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      ++++.  ..-+|.+|++..+.....    .+..+ .-....+.|.|+|++ ++.. .+-.+++|.+|...........+.
T Consensus       158 ~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         158 YLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             EEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence            99997  466799999985543221    11122 234567899999999 5554 444599999999876311111111


Q ss_pred             eecc-ccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287          323 LFEE-QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       323 ~~~~-~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      .... +++      +.+ ..+...|.++|||++|.++..  ..|.+|.+...+..+..........         .+.  
T Consensus       232 ~i~tlP~d------F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg---------~~P--  293 (346)
T COG2706         232 TIDTLPED------FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG---------QFP--  293 (346)
T ss_pred             eeccCccc------cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC---------cCC--
Confidence            1111 111      111 146788999999999999875  7899999886444444333222110         011  


Q ss_pred             eeeEEEeCCCCEEEEEeC-CCcEEEEecCCC
Q 010287          400 KFECCLSGDGGRVATGSY-SNLFRVFGCSEG  429 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~  429 (513)
                       ....|++.+++|+++.. +..|.+|.....
T Consensus       294 -R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         294 -RDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             -ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             16789999999998885 457889977643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=9.2e-11  Score=98.61  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             CCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCccccccc
Q 010287          244 GETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTH  320 (513)
Q Consensus       244 ~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~  320 (513)
                      ..+|+. | .-|.|+|-|+......      .|..+..|...|.|++.+-+| .++|++|..|+ |||||..++....  
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~--  218 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQ--  218 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEee--
Confidence            334444 3 4799999999855431      122568899999999999999 99999999996 7899999998743  


Q ss_pred             ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC
Q 010287          321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  370 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~  370 (513)
                        .+....+          ...|.+|+|||+..+|++++| |+|+||.++.
T Consensus       219 --E~RRG~d----------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  219 --ELRRGVD----------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             --eeecCCc----------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence              3332211          157999999999999999998 9999999974

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.2e-11  Score=114.52  Aligned_cols=151  Identities=11%  Similarity=0.060  Sum_probs=93.1

Q ss_pred             CeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCC--cE
Q 010287          234 HINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SI  306 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i  306 (513)
                      .+.+.+|+|||+.|+..  .+  ..|++||+.++.. .        .+..+........|+||+ +.|+..+ .+|  .|
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I  316 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-T--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL  316 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-E--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence            35577899999887643  34  4477778875542 2        234445556779999999 6666555 344  57


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .++|+..+..     +.+..            +.+.+....|+|||+.|+... +   ..|.+||+..  .....+....
T Consensus       317 y~~d~~g~~~-----~~lt~------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~~  377 (435)
T PRK05137        317 YVMNADGSNP-----RRISF------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSGF  377 (435)
T ss_pred             EEEECCCCCe-----EEeec------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCCC
Confidence            7778765442     11111            113456688999999998754 2   3677788753  3333332111


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCC------CcEEEEecCCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEG  429 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~  429 (513)
                       .               +....|+|||++|+..+.+      ..++++|+..+
T Consensus       378 -~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        378 -L---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             -C---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence             1               1267899999998765432      25777887654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.8e-10  Score=102.85  Aligned_cols=317  Identities=15%  Similarity=0.215  Sum_probs=187.4

Q ss_pred             EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      +-+.|||.|.||+|--..| |.+|--..-...                       . .-.|             ..|.-+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~-----------------------~-RF~H-------------p~Vq~i  255 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRI-----------------------Q-RFYH-------------PGVQFI  255 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHH-----------------------H-hccC-------------CCceee
Confidence            6789999999999988776 899973322211                       1 1123             458888


Q ss_pred             EEeecCCCceEEEeec-----------CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          119 RWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       119 ~~~~~~~~~~l~s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      .|+|  +.++|++=+.           ...++|||+.+|..+..+.....                              
T Consensus       256 dfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------------------------  303 (698)
T KOG2314|consen  256 DFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------------------------  303 (698)
T ss_pred             ecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------------------------
Confidence            9966  6668888543           15688999999876654332100                              


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCccee
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF  267 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~  267 (513)
                                        ..                         ..-.-..||.|++++|--....|.||+...    +
T Consensus       304 ------------------~~-------------------------~~WP~frWS~DdKy~Arm~~~sisIyEtps----f  336 (698)
T KOG2314|consen  304 ------------------PY-------------------------LKWPIFRWSHDDKYFARMTGNSISIYETPS----F  336 (698)
T ss_pred             ------------------Cc-------------------------cccceEEeccCCceeEEeccceEEEEecCc----e
Confidence                              00                         001236799999999876557899998763    3


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      .+++.++..    -..|....|+|.+ ++||.=...     -.+.+-.+.+++.    +++-...+            -.
T Consensus       337 ~lld~Kslk----i~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~----iRt~nlfn------------Vs  395 (698)
T KOG2314|consen  337 MLLDKKSLK----ISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKRE----IRTKNLFN------------VS  395 (698)
T ss_pred             eeecccccC----CccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccce----eeecccee------------ee
Confidence            333333322    3458889999997 777753321     1333444433332    11111110            11


Q ss_pred             EEEEEEeecCCEEEEEeC-----------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          343 ISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      =..+.|-.+|.+|+.--+           ..+.|+.++...-++..+...+.                |...+|-|.|+.
T Consensus       396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~----------------vi~FaWEP~gdk  459 (698)
T KOG2314|consen  396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES----------------VIAFAWEPHGDK  459 (698)
T ss_pred             ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh----------------eeeeeeccCCCe
Confidence            123456668888875211           35667777643444444443332                458899999987


Q ss_pred             EEEEe---CCCcEEEEecCCC-CccceeecCCCCceeEEEEcCCCCceeee---cCCCeEEEecCCCCCccccCCccccc
Q 010287          412 VATGS---YSNLFRVFGCSEG-SAESTTLEASKNPMRRQVQTPSRPSRPLG---SLSGVVRRVKGADNSALDANGNAFDF  484 (513)
Q Consensus       412 l~~~~---~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~  484 (513)
                      +++-+   ...++.+|.+++. .......+......+.+.|+|.|++++.+   |..|.+..++..-.   ........-
T Consensus       460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~e  536 (698)
T KOG2314|consen  460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPE  536 (698)
T ss_pred             EEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCcc
Confidence            76443   2467899998843 22223333444667789999999998766   34566666322210   001111111


Q ss_pred             cCCeeEEEEeCCCCEEEEEc-------CCcEEEEe
Q 010287          485 SMKLLHLAWHPSENSIACAA-------SNSLYMYY  512 (513)
Q Consensus       485 ~~~i~~~~~sp~~~~la~~~-------~~~~~i~~  512 (513)
                      ....+.+.|.|.|+++++++       +++..||.
T Consensus       537 h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~t  571 (698)
T KOG2314|consen  537 HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFT  571 (698)
T ss_pred             ccccccceECCCCCEEEEeeehhhhccccceEEEE
Confidence            23468899999999999765       55666653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.2e-09  Score=100.84  Aligned_cols=275  Identities=13%  Similarity=0.177  Sum_probs=159.6

Q ss_pred             ccccEEEEEEcCCCCEEEeecC----CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      -....+.++++|++++|.+...    +|.|..|++.....                   ............         
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g---------   86 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG---------   86 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence            4456677899999999888765    57899999876421                   001111111011         


Q ss_pred             cccccceeEEEeecCCCceEEEee-cCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                         .....++.  ++++.+|+++. .+|.|.++++.. +.+..........+                   ..|+-    
T Consensus        87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g-------------------~g~~~----  138 (345)
T PF10282_consen   87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG-------------------SGPNP----  138 (345)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE-------------------EESST----
T ss_pred             ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC-------------------CCCcc----
Confidence               23456777  55788888885 589999999986 44433221110000                   00000    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~  265 (513)
                                                              .........++.++|+++++++.  ....|.+|++.....
T Consensus       139 ----------------------------------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~  178 (345)
T PF10282_consen  139 ----------------------------------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG  178 (345)
T ss_dssp             ----------------------------------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred             ----------------------------------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence                                                    01112446789999999999887  477899999986552


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC--CcccccccceeeccccCCCCccccccccccE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      .+....  ...+ ......+.+.|+|++..++++.-.++.|.++++.  ++..  +.+.........     ..+ ....
T Consensus       179 ~l~~~~--~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~-----~~~-~~~~  247 (345)
T PF10282_consen  179 KLTPVD--SIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEG-----FTG-ENAP  247 (345)
T ss_dssp             TEEEEE--EEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETT-----SCS-SSSE
T ss_pred             eEEEee--cccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce--eEEEEeeecccc-----ccc-cCCc
Confidence            221100  0011 2355689999999995555666678999999988  3322  111111111000     000 1257


Q ss_pred             EEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCc
Q 010287          344 SDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL  420 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~  420 (513)
                      ..|.++|||++|+++..  +.|.+|++......+..+..-....         ..   -..+.++|+|++|+++. .++.
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---------~~---Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---------KF---PRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---------SS---EEEEEE-TTSSEEEEEETTTTE
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---------CC---ccEEEEeCCCCEEEEEecCCCe
Confidence            88999999999998764  8999999953233333322111000         00   12789999999999877 6678


Q ss_pred             EEEEecC
Q 010287          421 FRVFGCS  427 (513)
Q Consensus       421 i~vwd~~  427 (513)
                      |.+|++.
T Consensus       316 v~vf~~d  322 (345)
T PF10282_consen  316 VSVFDID  322 (345)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=2.2e-11  Score=113.01  Aligned_cols=302  Identities=11%  Similarity=0.149  Sum_probs=198.6

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .......|++|+....|||+|+.||.+++-.+.+...-... +.|...       ......+.+.||.            
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-~glaa~-------snLsmNQtLeGH~------------   71 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-SGLAAA-------SNLSMNQTLEGHN------------   71 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-cccccc-------cccchhhhhccCc------------
Confidence            34568899999999999999999999999998765542211 112111       1334557789999            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|..+.|  +.+...|-++..+|.|.+|-+-.+.......                                       
T Consensus        72 ~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------------------------------  110 (1189)
T KOG2041|consen   72 ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------------------------------  110 (1189)
T ss_pred             ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh---------------------------------------
Confidence            88999999  4566788888899999999988775321100                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         .....+-|.+++|+.+|..++.. .||.|.+=.++ +++.+..  
T Consensus       111 -----------------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK--  152 (1189)
T KOG2041|consen  111 -----------------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK--  152 (1189)
T ss_pred             -----------------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch--
Confidence                                               01122448899999999999988 79999888776 3333321  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEEEEe-
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFA-  349 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-  349 (513)
                          .+++  .....+.|++|. ..++.+-.+|.+.+||........-. .....+..      .+......|..+.|. 
T Consensus       153 ----eLkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg------~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  153 ----ELKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG------IFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             ----hcch--heccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee------eecCCCccccceeecc
Confidence                2222  224578899998 78888888999999996543211000 00001000      011111224455553 


Q ss_pred             -------ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---
Q 010287          350 -------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---  418 (513)
Q Consensus       350 -------p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  418 (513)
                             |+...|+.+-+ |.+.|..-.++..++-.-.+-.                 +....|+++|.+|+.++.+   
T Consensus       220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDSDA  282 (1189)
T ss_pred             CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcccc
Confidence                   57788888876 8888876654344433222211                 3478999999999988764   


Q ss_pred             ------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          419 ------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       419 ------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                            +.|.+|..-  +....+++.....++.+.|-..|-.+|.+ .|+.|.+
T Consensus       283 ~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  283 DEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF  333 (1189)
T ss_pred             cCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence                  356777655  46677888888889999997766666554 4666665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=2.5e-11  Score=102.90  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=136.1

Q ss_pred             CCeEEEEeccCCC---EEEEEcCCeEEEEEcCCCccee-----------------ee---------cccCccc--ccccc
Q 010287          233 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSF-----------------NI---------VDVKPAN--MEDLT  281 (513)
Q Consensus       233 ~~v~~~~~~~~~~---~l~s~~d~~i~vwd~~~~~~~~-----------------~~---------~~~~~~~--~~~~~  281 (513)
                      ..|..+.|.++++   +|+++.|.+|++|.+.......                 ++         +...|..  -..|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            3477888887643   4455589999999876432211                 00         0001111  14678


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEE-e
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSR-D  359 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~-~  359 (513)
                      -.|.++.++.|. ..+++ ..|=.|.+|++.-....   ....+.....     +.....-|++..|+|. ...++-. +
T Consensus       165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP~n-----mEeLteVITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKPAN-----MEELTEVITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccccC-----HHHHHHHHhhhccCHhHccEEEEecC
Confidence            889999999997 55554 47789999998653321   2222211110     2333456888999994 3444444 4


Q ss_pred             CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287          360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                      .|+|++-|++...-+...-+.-+.+......-+-...+..|..+.|+++|+|+++-.. -+|++||+....+...+...|
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            5999999998422111111111111111111122234456779999999999997665 589999996554444555433


Q ss_pred             C------------Cc---eeEEEEcCCCCceeeecCCCeEEEec
Q 010287          440 K------------NP---MRRQVQTPSRPSRPLGSLSGVVRRVK  468 (513)
Q Consensus       440 ~------------~~---v~~~~~~~~~~~l~~~~~d~~i~~~~  468 (513)
                      .            ..   -..++|+.++.++.+|+....+++..
T Consensus       314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            2            11   23578899999999999999999943

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=2.1e-10  Score=102.65  Aligned_cols=323  Identities=14%  Similarity=0.140  Sum_probs=185.6

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ..-++..++|||.|.+|++....| |.+|.-......                       ..+. |             .
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l-----------------------~~~~-~-------------~   72 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKL-----------------------VRFR-H-------------P   72 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhhe-----------------------eeee-c-------------C
Confidence            346889999999999999987764 999985433321                       1111 1             3


Q ss_pred             cceeEEEeecCCCceEEEeecCC---------------eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287          114 KINKIRWCQSANSALYLLSTNDK---------------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (513)
                      .|..+.|+|  ++.+|.+-+...               .+.+||+.++.+...+.....+            ...+..+.
T Consensus        73 ~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~Wp~~k  138 (561)
T COG5354          73 DVKYLDFSP--NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGWPVLK  138 (561)
T ss_pred             CceecccCc--ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------------ccccceee
Confidence            477777754  666777755433               4899999999887766544332            01112333


Q ss_pred             eccCCCcccccc----------------------CCCCCCCCcCCCCCCc-eeceeeccCCcccccceeeE----eeccc
Q 010287          179 YMANGGCGERNF----------------------GCASNDSSFPPGGVSS-LRLPVVTSQETNLVAGCRRI----YAHAH  231 (513)
Q Consensus       179 ~~~~g~~~~~~~----------------------~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~----~~~~h  231 (513)
                      |+.+.++...+.                      .....++.+++.+++. +..|-....+..........    .+..+
T Consensus       139 ~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk  218 (561)
T COG5354         139 FSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK  218 (561)
T ss_pred             eeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence            444433322111                      1112245555553333 34443332222111111100    00000


Q ss_pred             c---CCeEEEEeccCCCEEEEE------------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeE
Q 010287          232 D---YHINSISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM  296 (513)
Q Consensus       232 ~---~~v~~~~~~~~~~~l~s~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (513)
                      +   -.=..+.|.+.|++|+.-            ++..++++++...  .+.+      . ....++|...+|.|.+ +.
T Consensus       219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V------~-~~~~~pVhdf~W~p~S-~~  288 (561)
T COG5354         219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPV------E-KDLKDPVHDFTWEPLS-SR  288 (561)
T ss_pred             eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccce------e-ccccccceeeeecccC-Cc
Confidence            0   001246677777776631            1345667766622  1111      1 1457899999999998 55


Q ss_pred             EEEE--eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccC
Q 010287          297 LAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINM  370 (513)
Q Consensus       297 l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~  370 (513)
                      |++.  ..+-.+.++|++..-.       +..++            +.-..+.|+|.+++++.++ +   |.+.+||...
T Consensus       289 F~vi~g~~pa~~s~~~lr~Nl~-------~~~Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         289 FAVISGYMPASVSVFDLRGNLR-------FYFPE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             eeEEecccccceeecccccceE-------EecCC------------cccccccccCcccEEEEecCCccccceEEeccCC
Confidence            5544  4688999999886521       11111            2345678999999998853 2   9999999885


Q ss_pred             CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe------CCCcEEEEecCCCCccceeecCCCCcee
Q 010287          371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGCSEGSAESTTLEASKNPMR  444 (513)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~v~  444 (513)
                      ....+..+.+....                 -+.|+||++++.+..      .|..+.|||+... ...        ...
T Consensus       350 rf~~~~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~f--------el~  403 (561)
T COG5354         350 RFKVAGAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KVF--------ELT  403 (561)
T ss_pred             ceEEEEEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEecCc-hhh--------hhh
Confidence            33333345444322                 578999999988664      3788999998744 211        344


Q ss_pred             EEEEcCCCCceeeecCCCe
Q 010287          445 RQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       445 ~~~~~~~~~~l~~~~~d~~  463 (513)
                      .+.|.|.+++..+.+.+..
T Consensus       404 ~~~W~p~~~~~ttsSs~~~  422 (561)
T COG5354         404 NITWDPSGQYVTTSSSCPK  422 (561)
T ss_pred             hccccCCcccceeeccCCC
Confidence            6677777777766666553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=4.6e-10  Score=107.63  Aligned_cols=148  Identities=10%  Similarity=0.138  Sum_probs=89.3

Q ss_pred             eEEEEeccCCCEEEEE--c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CC--cEE
Q 010287          235 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR  307 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~  307 (513)
                      +.+++|+|+++.|+..  .  ...|++|++.++...         .+..+........|+|++ +.|+..+. ++  .|.
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy  305 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIY  305 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEE
Confidence            4567899999877653  2  346888898755322         222333444567899998 66655444 44  566


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C---eEEEEEccCCCCCeeeeecccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~---~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      ++|+.+++.     ..+..            +........|+|+|++++.+.. +   .|.+||+.. + ....+.....
T Consensus       306 ~~d~~~~~~-----~~l~~------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~  366 (417)
T TIGR02800       306 MMDADGGEV-----RRLTF------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-G-GERVLTDTGL  366 (417)
T ss_pred             EEECCCCCE-----EEeec------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-C-CeEEccCCCC
Confidence            777665442     11111            1134567889999999887653 3   788888774 2 2233322111


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecC
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCS  427 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~  427 (513)
                                      .....|+||+++|+..+.++   .+++.+..
T Consensus       367 ----------------~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       367 ----------------DESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             ----------------CCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence                            11568999999988776543   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=2.2e-10  Score=109.85  Aligned_cols=186  Identities=14%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             ccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--
Q 010287          231 HDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--  304 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--  304 (513)
                      +...+...+|+|++++|+.+ .   ...|++||+.++...         .+..+...+.++.|+|++..++++.+.++  
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  258 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP  258 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            33457788899999999876 2   357999999866432         12233455667899999944445555555  


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeeeec
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~~~  380 (513)
                      .|.+||+.++...     .+..            +........|+|||+.|+..++  +  .|+++|+.. ++ ...+..
T Consensus       259 ~i~~~d~~~~~~~-----~l~~------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~  319 (417)
T TIGR02800       259 DIYVMDLDGKQLT-----RLTN------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTF  319 (417)
T ss_pred             cEEEEECCCCCEE-----ECCC------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeec
Confidence            5888888765431     1111            1123345689999998876543  3  577777663 33 333332


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      +...               .....|+|+|++|+.++.++   .|.+||+.++..  ..+... .......|+|+++.|+.
T Consensus       320 ~~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       320 RGGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPNGRMILY  381 (417)
T ss_pred             CCCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCCCCEEEE
Confidence            2211               22678999999999887765   788999886532  222222 12345689999998887


Q ss_pred             ecCCC
Q 010287          458 GSLSG  462 (513)
Q Consensus       458 ~~~d~  462 (513)
                      .+.++
T Consensus       382 ~~~~~  386 (417)
T TIGR02800       382 ATTRG  386 (417)
T ss_pred             EEeCC
Confidence            76654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=7.1e-10  Score=105.88  Aligned_cols=167  Identities=13%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             EEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCc--EEEE
Q 010287          237 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGS--IRLI  309 (513)
Q Consensus       237 ~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~--i~vw  309 (513)
                      ..+|+|||+.|+..  .++  .|+++|+.+++. .        .+..+........|+||+ +.|+. ...++.  |.++
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence            57899999988754  355  477778875432 1        223344456778999999 55544 444454  5555


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-C--eEEEEEccCCCCCeeeeecccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~--~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      |+.+++...  + ++..              ......+|+|||++|+..+ . +  .|.++|+.. +. ...+...... 
T Consensus       336 dl~~g~~~~--L-t~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d-  395 (448)
T PRK04792        336 NLASGKVSR--L-TFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD-  395 (448)
T ss_pred             ECCCCCEEE--E-ecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCCCC-
Confidence            666554310  1 1111              1223468999999988743 2 4  455566653 32 2333211100 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeC-CCc--EEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                                     ....|+|||++|+..+. ++.  +++++.. + .....+..+...+....|+|
T Consensus       396 ---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        396 ---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ---------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence                           14579999998876553 343  6677764 3 23344444444455566665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=5.2e-10  Score=93.11  Aligned_cols=192  Identities=10%  Similarity=0.011  Sum_probs=126.4

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      ..++.|++.+..++++ ++|.+.+-+..... +.+.     +..+.|...+....|+...++++++|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee-eeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4578899988889998 79998855543222 1111     256789999999999998889999999999999999984


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ...     ..+..         .+-|...|.+|.-+| .+.+|++|+. ..|++||.++-++++..-....         
T Consensus       198 p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G---------  254 (339)
T KOG0280|consen  198 PKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG---------  254 (339)
T ss_pred             Ccc-----eeeec---------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc---------
Confidence            321     11111         234667899998887 6889999986 9999999997577775443332         


Q ss_pred             cccCCccceeeEEEeCCC--CEEEEEeCCCcEEEEecCCCCccc----eeecCCCCceeEEEEcCCCCceeeec-CCCe
Q 010287          392 YENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPSRPLGS-LSGV  463 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~  463 (513)
                             +|+.+.++|.-  ..|+++-.+| .+|-+.+.+..+.    ...+.|.+-...--|.....++|+++ .|+.
T Consensus       255 -------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  255 -------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             -------ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence                   26788888853  3455555555 5666666543331    22233443333333333334567664 3444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.1e-09  Score=99.37  Aligned_cols=196  Identities=11%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeE
Q 010287          285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL  363 (513)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v  363 (513)
                      .+++++.-. --|+.++....|.-+++..|..    +..|...            .+.+++|..++...+|++|+. |.|
T Consensus       137 RDm~y~~~s-cDly~~gsg~evYRlNLEqGrf----L~P~~~~------------~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  137 RDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRF----LNPFETD------------SGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             ccccccCCC-ccEEEeecCcceEEEEcccccc----ccccccc------------cccceeeeecCccceEEecccCceE
Confidence            355565444 2344555667788888888775    2223322            267999999999999999985 999


Q ss_pred             EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCce
Q 010287          364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM  443 (513)
Q Consensus       364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v  443 (513)
                      ..||.+. ...+..+......    ......+....|+++.|+.+|-.+++|+.+|.+.|||+++....+..-.+..-|+
T Consensus       200 EfwDpR~-ksrv~~l~~~~~v----~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  200 EFWDPRD-KSRVGTLDAASSV----NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             EEecchh-hhhheeeeccccc----CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            9999986 5555555443321    1111112233478999999999999999999999999998765544444556688


Q ss_pred             eEEEEcCCC--CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287          444 RRQVQTPSR--PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS  507 (513)
Q Consensus       444 ~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~  507 (513)
                      ..+.|.+.+  ..+++. ....++|   |+... -......+....++.+++-|++.++.+|-++.
T Consensus       275 ~~l~~~~~~~q~~v~S~-Dk~~~ki---Wd~~~-Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSM-DKRILKI---WDECT-GKPMASIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             eeecccccCCCceEEec-chHHhhh---ccccc-CCceeeccccCCcCceeeecCCceEEEecCCC
Confidence            888886663  334433 2344555   43321 11223334567799999999999998887554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.30  E-value=2.7e-08  Score=102.10  Aligned_cols=359  Identities=13%  Similarity=0.132  Sum_probs=188.9

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ..+.|.++.|-++...++.+..+|.|.+.........                 ........               ++.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-----------------~~~E~VG~---------------vd~  121 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-----------------DEIEIVGS---------------VDS  121 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-----------------ceeEEEEE---------------EcC
Confidence            3478999999999999999999999999832211100                 00011111               127


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEcc----C---------ceeee--------eeccccCCCcccC---------
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ----E---------KKVKK--------VFDWNVHPEKAAG---------  163 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~----~---------~~~~~--------~~~~~~~~~~~~~---------  163 (513)
                      .|.+++|+|  |+..|+..+.++++.+-.-.    .         +.-+.        ..+++...++..+         
T Consensus       122 GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  122 GILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            799999966  77799999888888765321    1         00000        0111111111100         


Q ss_pred             ---CCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe
Q 010287          164 ---NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN  240 (513)
Q Consensus       164 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  240 (513)
                         .+... .......++|..||.+..+....      ...+....+++|+-. +......+       .-.+--.+++|
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~------~~~~~~R~iRVy~Re-G~L~stSE-------~v~gLe~~l~W  264 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE------PETGSRRVIRVYSRE-GELQSTSE-------PVDGLEGALSW  264 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEE------cCCCceeEEEEECCC-ceEEeccc-------cCCCccCCccC
Confidence               11111 22234466777888875321110      011124567777654 11111111       11122347899


Q ss_pred             ccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287          241 NSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       241 ~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      -|.|++|++. .   ...|.+|..+ |-+-.+ +.+   .+......|..+.|++++ ..||....|. |.+|-..+...
T Consensus       265 rPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  265 RPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             CCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE
Confidence            9999999987 2   4667777655 222111 111   222456779999999998 8888876555 99998877553


Q ss_pred             ccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEeC-CeEEEEEcc----CC-C------CCeeeeecc--
Q 010287          317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDIN----MD-S------GPVATFQVH--  381 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~-~~v~iwd~~----~~-~------~~~~~~~~~--  381 (513)
                      ..+....+...             ..+..+.|+|. ...|..... +.+..++..    .. +      ..+..+.+.  
T Consensus       338 YLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l  404 (928)
T PF04762_consen  338 YLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL  404 (928)
T ss_pred             EEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence            32211112111             22344777773 233333332 444443321    10 0      001111111  


Q ss_pred             ------cccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-------ceee----------cC
Q 010287          382 ------EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTL----------EA  438 (513)
Q Consensus       382 ------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~----------~~  438 (513)
                            ...++.-...+.-....+|.+++|++++..+++-..||.|.+|........       ...+          ..
T Consensus       405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (928)
T PF04762_consen  405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL  484 (928)
T ss_pred             EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence                  111111111122222234679999999988999999999999985443111       0111          11


Q ss_pred             CCCceeEEEEcCCCCceeeecCC
Q 010287          439 SKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       439 ~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      .......++|..+..+++....+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  485 PLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             ccccEEEEEEeCCCEEEEEEecC
Confidence            23456778887777766665544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=4.2e-10  Score=107.45  Aligned_cols=215  Identities=12%  Similarity=0.150  Sum_probs=123.4

Q ss_pred             cccCCeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          230 AHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .+...+.+..|+|||+.|+..  .+  ..|++||+.+++.. .+        ...........|+||+..++++.+.+|.
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l--------t~~~g~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV--------TSFPGINGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee--------cCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence            445668889999999998875  23  36888898765432 11        1112233468999999444455666775


Q ss_pred             --EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeeee
Q 010287          306 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       306 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~~  379 (513)
                        |.++|+.++..     +.+.            .+.......+|+|||+.|+..++  +  .|+++|+.. ++ ...+.
T Consensus       286 ~~Iy~~dl~tg~~-----~~lt------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt  346 (448)
T PRK04792        286 PEIYVVDIATKAL-----TRIT------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLT  346 (448)
T ss_pred             eEEEEEECCCCCe-----EECc------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEe
Confidence              66678776543     1111            11134566889999998876543  4  455556653 33 33332


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      .....               ....+|+|||++|+..+. ++  .|.++|+.++...  .+.... ......|+|+++.|+
T Consensus       347 ~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I~  408 (448)
T PRK04792        347 FEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMVI  408 (448)
T ss_pred             cCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEEE
Confidence            11111               115689999999886654 44  4555677766322  222211 222457999999887


Q ss_pred             eecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          457 LGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       457 ~~~~-d~~--i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      ..+. ++.  +.+.  ++....      ......+.+...+|+|-
T Consensus       409 ~~~~~~g~~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        409 YSTTYQGKQVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEecCCceEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence            6554 333  3331  222111      11123456777888873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=3.2e-10  Score=105.57  Aligned_cols=247  Identities=10%  Similarity=0.093  Sum_probs=158.5

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      +.||...|.-+.|+.+.+.|.++ .+|-|.+|-+-.+.-.-+.+      -....+.|.+++|+.+| ..+.....||.|
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~SmsWn~dG-~kIcIvYeDGav  139 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVSMSWNLDG-TKICIVYEDGAV  139 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEEEEEcCCC-cEEEEEEccCCE
Confidence            57999999999999999999999 59999999988665333322      12245778999999999 889999999999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee------e
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF------Q  379 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~------~  379 (513)
                      .+=.+...+.-.   +.+++              .....+.|++|.+.++.+-. |.+.+||..-  .....+      .
T Consensus       140 IVGsvdGNRIwg---KeLkg--------------~~l~hv~ws~D~~~~Lf~~ange~hlydnqg--nF~~Kl~~~c~Vn  200 (1189)
T KOG2041|consen  140 IVGSVDGNRIWG---KELKG--------------QLLAHVLWSEDLEQALFKKANGETHLYDNQG--NFERKLEKDCEVN  200 (1189)
T ss_pred             EEEeeccceecc---hhcch--------------heccceeecccHHHHHhhhcCCcEEEecccc--cHHHhhhhceEEe
Confidence            887665433211   11222              23567899999988877655 9999999762  211111      1


Q ss_pred             cccc---cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          380 VHEH---LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       380 ~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                      +...   ...++....++...    -.-.-||...|+.+-..|.+.+-.-.+.... ..+.. .-.+....|+++|..||
T Consensus       201 ~tg~~s~~~~kia~i~w~~g~----~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-vv~dt-gm~~vgakWnh~G~vLA  274 (1189)
T KOG2041|consen  201 GTGIFSNFPTKIAEIEWNTGP----YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-VVVDT-GMKIVGAKWNHNGAVLA  274 (1189)
T ss_pred             eeeeecCCCccccceeeccCc----cccCCCCCCEEEEEEcCceehhhhhcCCCCC-eEEec-ccEeecceecCCCcEEE
Confidence            1000   00011111111100    1122368889999999999988876655332 22222 24566889999999999


Q ss_pred             eecCCCe---------EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          457 LGSLSGV---------VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       457 ~~~~d~~---------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                      .++.+..         |.+   ..+.+ ...+...--...|++++|-..|-.+|.+-+.-+++
T Consensus       275 vcG~~~da~~~~d~n~v~F---ysp~G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf  333 (1189)
T KOG2041|consen  275 VCGNDSDADEPTDSNKVHF---YSPYG-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF  333 (1189)
T ss_pred             EccCcccccCccccceEEE---eccch-hheEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence            9987632         222   11110 11112222367899999999999999888875554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.6e-09  Score=102.54  Aligned_cols=168  Identities=12%  Similarity=0.153  Sum_probs=96.3

Q ss_pred             EEEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCC--cEEE
Q 010287          236 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRL  308 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~v  308 (513)
                      ...+|+|+|+.|+..  .++  .|++||+.++...         .+..+........|+|++ +.|+..+ .+|  .|.+
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~  315 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYK  315 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEE
Confidence            357899999988753  333  6888898865422         223344445678899999 5554444 444  4666


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeeccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      +|+.+++...  + .+..              .......|+|+|++|+....    ..|.+||+.+ +. ...+... ..
T Consensus       316 ~d~~~g~~~~--l-t~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~  375 (430)
T PRK00178        316 VNVNGGRAER--V-TFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SL  375 (430)
T ss_pred             EECCCCCEEE--e-ecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CC
Confidence            6766654310  1 1111              12335689999999987542    3578888875 33 2333211 11


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCC-C--cEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                      .               ....|+|||++++..+.+ +  .|+++++...  ....+..+...+....|+|
T Consensus       376 ~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        376 D---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence            0               146899999998866543 3  4666676533  2233333334445555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.1e-09  Score=104.96  Aligned_cols=187  Identities=14%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             ccccCCeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          229 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      ..+...+....|+|||+.|+..  .+  ..|.+|++.++... .        +......+....|+|++..++++...+|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q--------ITNFEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E--------ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            3555678899999999998764  22  46899999866432 1        1222334457899999944444555555


Q ss_pred             --cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeee
Q 010287          305 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATF  378 (513)
Q Consensus       305 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~  378 (513)
                        .|.+||+.++..     +.+..            +........|+|||+.|+..++  +  .|+++|+.. ++ ...+
T Consensus       266 ~~~Iy~~d~~~~~~-----~~lt~------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~l  326 (430)
T PRK00178        266 NPEIYVMDLASRQL-----SRVTN------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERV  326 (430)
T ss_pred             CceEEEEECCCCCe-----EEccc------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEe
Confidence              577889877653     11111            1123456789999998876543  3  566667654 33 3333


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCccceeecCCCCceeEEEEcCCCCce
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR  455 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  455 (513)
                      ......               .....|+|||++|+..+. ++  .|.+||+.++....  +... .......|+|+|+.+
T Consensus       327 t~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~~-~~~~~p~~spdg~~i  388 (430)
T PRK00178        327 TFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTDT-SLDESPSVAPNGTML  388 (430)
T ss_pred             ecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccCC-CCCCCceECCCCCEE
Confidence            211111               115789999999986654 33  57888988764322  2211 122356899999998


Q ss_pred             eeecCC
Q 010287          456 PLGSLS  461 (513)
Q Consensus       456 ~~~~~d  461 (513)
                      +..+.+
T Consensus       389 ~~~~~~  394 (430)
T PRK00178        389 IYATRQ  394 (430)
T ss_pred             EEEEec
Confidence            876543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.7e-09  Score=96.86  Aligned_cols=129  Identities=16%  Similarity=0.254  Sum_probs=93.8

Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE--EEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .++++.+++.....+.        + ...++|.++.|+|++ +.|+  .|-+--.+.+||++-.-.       ++-.+  
T Consensus       251 q~Lyll~t~g~s~~V~--------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df~e--  311 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVP--------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDFPE--  311 (566)
T ss_pred             ceEEEEEecCceEEEe--------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeCCC--
Confidence            4677777763332222        1 137899999999998 5443  455678899999864321       22222  


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                                ++-+++-|+|.|++|+.++   - |.+.|||+.+ .+.+..+......                 -+.|+
T Consensus       312 ----------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~  363 (566)
T KOG2315|consen  312 ----------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWS  363 (566)
T ss_pred             ----------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEc
Confidence                      5678899999999998754   2 9999999997 7888777665543                 68999


Q ss_pred             CCCCEEEEEeC------CCcEEEEecCC
Q 010287          407 GDGGRVATGSY------SNLFRVFGCSE  428 (513)
Q Consensus       407 ~~~~~l~~~~~------dg~i~vwd~~~  428 (513)
                      |||++++|++.      |+.++||+...
T Consensus       364 PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  364 PDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CCCcEEEEEeccccEEecCCeEEEEecC
Confidence            99999998875      68899999873

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.27  E-value=1.4e-09  Score=99.44  Aligned_cols=187  Identities=15%  Similarity=0.177  Sum_probs=136.1

Q ss_pred             cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe------C-------------CCCeEEEEEe
Q 010287          242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH------P-------------THCNMLAYSS  301 (513)
Q Consensus       242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~  301 (513)
                      |...+++.. .||.+++|+...++...++.+.     ..-.+.-++..|.      |             .+...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccc-----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            446788887 7999999999977655443211     1112333344442      2             1225788889


Q ss_pred             CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287          302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       302 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~  380 (513)
                      ..|.|.+|++..++..    ..+..          ..|-+.|.++.++.+-..|.+++. +.+..|+... ...++.+..
T Consensus        78 ~~g~v~~ys~~~g~it----~~~st----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~  142 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEIT----AKLST----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE  142 (541)
T ss_pred             CCccEEEEEecCCeEE----EEEec----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc
Confidence            9999999999888762    23332          235588999999998899998764 9999999985 777777776


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC-----CCce
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-----RPSR  455 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l  455 (513)
                      ....+               .+++.+||+..+++++  +.|++||++++ +...++.+|.++|+.+.|..+     |.++
T Consensus       143 ~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~v  204 (541)
T KOG4547|consen  143 QKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYV  204 (541)
T ss_pred             CCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccccccee
Confidence            66543               3899999999999887  68999999987 667999999999999999776     6665


Q ss_pred             eee-cCCCeEEE
Q 010287          456 PLG-SLSGVVRR  466 (513)
Q Consensus       456 ~~~-~~d~~i~~  466 (513)
                      +++ ..++.+.+
T Consensus       205 Lssa~~~r~i~~  216 (541)
T KOG4547|consen  205 LSSAAAERGITV  216 (541)
T ss_pred             eeccccccceeE
Confidence            554 34444444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=3.7e-10  Score=109.65  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=120.2

Q ss_pred             EeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287          239 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  317 (513)
Q Consensus       239 ~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  317 (513)
                      -++++.-++++| .-+.|.+|+....+.        |..+.+|.+.|.++.++-+| .++++.|.|.++++|++.+.+..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~--------p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNK--------PIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCC--------cceecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence            345666678888 589999999983322        22578999999999999999 99999999999999999987652


Q ss_pred             cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCC
Q 010287          318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS  396 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (513)
                      .               ...-+|.+.+..+.|.|+  .+++++ |-+.++|+..  +..+..+..|...            
T Consensus       211 ~---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------  259 (967)
T KOG0974|consen  211 G---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------  259 (967)
T ss_pred             C---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc------------
Confidence            2               113568899999999998  777765 5999999776  6777777777653            


Q ss_pred             ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                        .++.++..++...++|++.|+.+++|++...
T Consensus       260 --~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  260 --GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             --ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence              2568999999999999999999999998754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.24  E-value=5.7e-10  Score=94.90  Aligned_cols=209  Identities=11%  Similarity=0.189  Sum_probs=138.3

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...-..+++++++++....|.+|-.+|++.-+.+...-.                   ...+.+....|.          
T Consensus        64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~----------  114 (404)
T KOG1409|consen   64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ----------  114 (404)
T ss_pred             hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh----------
Confidence            334468899999999999999999999999888643211                   111223344555          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|..+-|.  .....+++.+.|+.+.-.-.+.+....-..+...                ++.+.+..         
T Consensus       115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~---------  165 (404)
T KOG1409|consen  115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDA---------  165 (404)
T ss_pred             --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceee---------
Confidence              889999994  4556899999999876555554432211111000                00000000         


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                           .+.+.+...+.+..-.+.....     ..-..+.+|.+.+.+++|.+..+.|++| .|..+.+||+--.... . 
T Consensus       166 -----~~~fvGd~~gqvt~lr~~~~~~-----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~-  233 (404)
T KOG1409|consen  166 -----LYAFVGDHSGQITMLKLEQNGC-----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-A-  233 (404)
T ss_pred             -----EEEEecccccceEEEEEeecCC-----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-e-
Confidence                 0224444555555444322211     2223358999999999999999999999 7999999999733322 1 


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  315 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  315 (513)
                           ..+.+|...|..+...+.- ..+.+++.||.|.+||+....
T Consensus       234 -----~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  234 -----YELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             -----eeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence                 2567899999999888876 889999999999999987643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.6e-09  Score=98.92  Aligned_cols=207  Identities=13%  Similarity=0.173  Sum_probs=146.1

Q ss_pred             CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCC
Q 010287          125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (513)
Q Consensus       125 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  204 (513)
                      ...+++....||.+++|+...++....+...                                           ....+.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-------------------------------------------~~~s~t   40 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-------------------------------------------ASLSGT   40 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccc-------------------------------------------hhccCc
Confidence            3468999999999999999998765543221                                           112233


Q ss_pred             CceeceeeccCCcccccceeeEeeccccCCeEEEEe----ccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccc
Q 010287          205 SSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN----NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED  279 (513)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  279 (513)
                      +.-..|.+........              ..++.+    +.+...++-| ..|.|.+|+...++....+      .-..
T Consensus        41 ~~~~~w~L~~~~s~~k--------------~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~  100 (541)
T KOG4547|consen   41 CTYTKWGLSADYSPMK--------------WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------STDK  100 (541)
T ss_pred             ceeEEEEEEeccchHH--------------HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ecCC
Confidence            3444555432222111              111111    2244456667 7999999999876654433      3367


Q ss_pred             ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                      |.+.|.++.++.+- ..|.+++.|+.+..|+......    ++.+....            ..+.+++.+||+..+++++
T Consensus       101 h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~------------~~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen  101 HYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----IRIWKEQK------------PLVSSLCISPDGKILLTAS  163 (541)
T ss_pred             CCCcceeeeccccc-CceEecCCceeEEEEeccccee----eeeeccCC------------CccceEEEcCCCCEEEecc
Confidence            89999999999887 8999999999999999987765    45555443            4689999999999999888


Q ss_pred             CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-----CCEEEEE-eCCCcEEEEecCC
Q 010287          360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVATG-SYSNLFRVFGCSE  428 (513)
Q Consensus       360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~vwd~~~  428 (513)
                       +.|++||+.+ .+.+..+++|...++               .+.|..+     |.++.++ ..+.-+.+|-...
T Consensus       164 -~~ik~~~~~~-kevv~~ftgh~s~v~---------------t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 -RQIKVLDIET-KEVVITFTGHGSPVR---------------TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEccC-ceEEEEecCCCcceE---------------EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence             6999999997 999999999998854               6667665     6666643 4556677886654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=5.4e-09  Score=99.05  Aligned_cols=221  Identities=14%  Similarity=0.097  Sum_probs=121.1

Q ss_pred             ccCCeEEEEeccCCCE--E-EEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CC
Q 010287          231 HDYHINSISNNSDGET--F-ISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK  303 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~--l-~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d  303 (513)
                      ......+-+|+|||+.  + +++ .  ...|.+.++..++.. .        +...........|+||| +.|+..+ .+
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~--------lt~~~g~~~~p~wSPDG-~~Laf~s~~~  252 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K--------ILALQGNQLMPTFSPRK-KLLAFISDRY  252 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E--------eecCCCCccceEECCCC-CEEEEEECCC
Confidence            3344667899999875  3 234 3  346777788765432 1        22233445568999999 5555544 33


Q ss_pred             C----cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEE--ccCCCCCe
Q 010287          304 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWD--INMDSGPV  375 (513)
Q Consensus       304 g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd--~~~~~~~~  375 (513)
                      |    .+..|++..+... ........            ..+.....+|+|||+.|+..++  +...+|.  +...+...
T Consensus       253 g~~di~~~~~~~~~g~~g-~~~~lt~~------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIG-KPRRLLNE------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             CCcceeEEEeecccCCCC-cceEeecC------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence            3    3444666543110 00111111            1123456799999998886543  5555554  43212223


Q ss_pred             eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287          376 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR  452 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  452 (513)
                      ..+......               +....|+|||+.|+..+.+   ..|++||+.+++..  .+......+....|+|+|
T Consensus       320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS  382 (428)
T ss_pred             EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence            333322211               2268899999998866543   46999999877433  232223345678999999


Q ss_pred             Cceeeec-CC--CeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287          453 PSRPLGS-LS--GVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSE  497 (513)
Q Consensus       453 ~~l~~~~-~d--~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~  497 (513)
                      +.|+... .+  ..+.+.  .+....      ......+.+...+|+|..
T Consensus       383 ~~L~f~~~~~g~~~L~~vdl~~g~~~------~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        383 LHLVYSAGNSNESELYLISLITKKTR------KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEE------EeecCCCcccCceecCCC
Confidence            9887543 22  334431  222111      111124456778888754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=8.3e-10  Score=112.92  Aligned_cols=198  Identities=18%  Similarity=0.311  Sum_probs=141.9

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .+-..|.++.=+|.-.+.+||+.||.|++|.+..++.+                      ..-..+-.            
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v----------------------~~~rt~g~------------ 2251 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV----------------------VCFRTAGN------------ 2251 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------------EEeeccCc------------
Confidence            44578888988999999999999999999998766642                      11111122            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|+.+.|  +..|+.+..+..||.+.+|.+.....   ..                                       
T Consensus      2252 s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~---~s--------------------------------------- 2287 (2439)
T KOG1064|consen 2252 SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY---TS--------------------------------------- 2287 (2439)
T ss_pred             chhhhhhh--cccCCceeeeccCCceeecccCCcce---ec---------------------------------------
Confidence            67999999  55788999999999999999873211   00                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~  268 (513)
                                                         ...|......+.|-.  ..++++    +++.+.+||........-
T Consensus      2288 -----------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2288 -----------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             -----------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence                                               134555555666654  445553    488999999764433221


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      +      . ..|.+.++++++.|.. ++|++|+.+|.|++||++..++..    .|+                 .    +
T Consensus      2331 v------~-~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h----~~~-----------------~----~ 2377 (2439)
T KOG1064|consen 2331 V------H-TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRH----TFQ-----------------A----L 2377 (2439)
T ss_pred             e------e-eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHH----Hhh-----------------h----h
Confidence            1      1 6799999999999998 999999999999999999876532    111                 1    3


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~  380 (513)
                      . ...++++|+. |.++||++.. -..+.+++.
T Consensus      2378 ~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2378 D-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred             h-hhheeeccCcccceEEEEccc-cchhhcCch
Confidence            3 4568888876 9999999985 455555543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=2.4e-09  Score=104.16  Aligned_cols=188  Identities=13%  Similarity=0.056  Sum_probs=135.4

Q ss_pred             EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEE
Q 010287          289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD  367 (513)
Q Consensus       289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd  367 (513)
                      +.-+. ..++.++.+..+-+||...+....+    ....+        ...-....-+.++++.-++++|+- +.|.+|+
T Consensus        95 l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~e--------r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~  161 (967)
T KOG0974|consen   95 LFEEN-KKIALVTSRNSLLIRDSKNSSVLSK----IQSDE--------RCTLYSSLIIGDSAEELYIASGSVFGEIIVWK  161 (967)
T ss_pred             hhhhc-ceEEEEEcCceEEEEecccCceehh----cCCCc--------eEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence            33344 6788888899999999876654211    11100        000012223344566668888886 9999999


Q ss_pred             ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEE
Q 010287          368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV  447 (513)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~  447 (513)
                      ..- ......+.+|++.               ++++.++-||+++++.|+|.++++|++.+.+....+.-+|...+.+++
T Consensus       162 ~~~-dn~p~~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  162 PHE-DNKPIRLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             ccc-cCCcceecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            884 3333367888876               569999999999999999999999999998666567779999999999


Q ss_pred             EcCCCCceeeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                      +.|.  .+++++.|.+.++   |.....++. ...+| ...|..++.+++...+++++ |+++.+|
T Consensus       226 ~~~n--~i~t~gedctcrv---W~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  226 FLPN--RIITVGEDCTCRV---WGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             eccc--eeEEeccceEEEE---Eecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            9999  9999999999999   433322222 33344 45799999999998888777 6666655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=6.3e-08  Score=91.85  Aligned_cols=176  Identities=11%  Similarity=0.077  Sum_probs=96.9

Q ss_pred             EEEEeccCCCEEEEE-c-CC--e--EEEEEcCCC--cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcE
Q 010287          236 NSISNNSDGETFISA-D-DL--R--INLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSI  306 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-~-d~--~--i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i  306 (513)
                      ...+|+|||+.|+.. + +|  .  +..|++..+  .....+       ...........+|+||| +.|+..+ .+|..
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~~  305 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGRP  305 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCCc
Confidence            357899999888864 2 23  3  334666542  111111       11122334578999999 6555544 56766


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .+|.+...... ...+.+            ..+...+....|||||+.|+... .   ..|.+||+.. ++. ..+....
T Consensus       306 ~ly~~~~~~~g-~~~~~l------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~  370 (428)
T PRK01029        306 RIYIMQIDPEG-QSPRLL------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSP  370 (428)
T ss_pred             eEEEEECcccc-cceEEe------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCC
Confidence            66654221000 001111            11123467789999999888643 2   5789999875 433 3332221


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeC---CCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      ..               +....|+|||++|+....   ...|+++|+..++..  .+......+...+|+|-
T Consensus       371 ~~---------------~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~--~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        371 EN---------------KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR--KIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CC---------------ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCcccCceecCC
Confidence            11               126889999998875432   356888898866332  22223334455666654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=2.8e-08  Score=81.97  Aligned_cols=169  Identities=9%  Similarity=0.014  Sum_probs=109.3

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      +.+++++++++++++. +...|..|.+......+.-+     ......+.=.+..|+... ..||++..||++.|||+|.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence            6789999999999886 78899999887654433211     122334445688899988 8999999999999999997


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      .....    ......       -..|.+.++.+.|++-|.  +|+.... +.+.+.|+++ .+..+.+...+....    
T Consensus       235 ~~tpm----~~~sst-------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~----  298 (344)
T KOG4532|consen  235 MATPM----AEISST-------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVER----  298 (344)
T ss_pred             cccch----hhhccc-------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCccccc----
Confidence            55321    111111       234779999999998553  3444443 9999999997 665555543332200    


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                       .  ..-+.++...|+.++.-+.+.+.+ .+.-|++.+.
T Consensus       299 -~--~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  299 -K--HNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             -c--ccccccccccccCCCcccccccch-hhheeecccc
Confidence             0  001124467777777766665544 3555666543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=7.7e-07  Score=91.61  Aligned_cols=201  Identities=14%  Similarity=0.122  Sum_probs=117.4

Q ss_pred             ccCCeEEEEEeCCCCeEEEEEeC---C---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          280 LTEVITSAEFHPTHCNMLAYSSS---K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       280 ~~~~i~~~~~~~~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                      ....-..++|-.|| .+||+.+.   .   +.++||+- .|.+.    .+-+...            +--.+++|.|.|.
T Consensus       208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~R-eG~L~----stSE~v~------------gLe~~l~WrPsG~  269 (928)
T PF04762_consen  208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSR-EGELQ----STSEPVD------------GLEGALSWRPSGN  269 (928)
T ss_pred             cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECC-CceEE----eccccCC------------CccCCccCCCCCC
Confidence            34456789999999 88888775   2   57899984 45531    1111110            2235689999999


Q ss_pred             EEEEEeC----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          354 HILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       354 ~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +|++...    ..|.+|.-.  |-....+.......           -..|..+.|++|+..||..-.|. |.+|-..+.
T Consensus       270 lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~~-----------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  270 LIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDPE-----------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             EEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCCC-----------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            9998542    666777643  44333333322100           00145899999999999877665 999988875


Q ss_pred             Cc-cceeecCC-CCceeEEEEcCCCCc-eeeecCCCeEEE-----------------------ecCCCCCccc-------
Q 010287          430 SA-ESTTLEAS-KNPMRRQVQTPSRPS-RPLGSLSGVVRR-----------------------VKGADNSALD-------  476 (513)
Q Consensus       430 ~~-~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~i~~-----------------------~~~~~~~~~~-------  476 (513)
                      -- +.+.+... ...+..+.|+|...+ |.....+|.+..                       ++|..+.-..       
T Consensus       336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence            21 11333322 223334777775443 333333333322                       2333221111       


Q ss_pred             --cCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          477 --ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       477 --~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                        +....+....+|.+++|++++..+|+-. ++.+.+|.
T Consensus       416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence              1122224578999999999988666554 55588775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.11  E-value=6.2e-07  Score=80.23  Aligned_cols=144  Identities=16%  Similarity=0.238  Sum_probs=104.3

Q ss_pred             cccCCeEEEEeccCCCEEEEE-cCC-eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          230 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      +|...|.-..+.-+++-++.| .|| .+-++|.++++..         .+...-+.|.++..+|+| +.++.+.....+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~  426 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW  426 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence            555667777777777788888 566 8999999866532         334556789999999999 8889888899999


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE---e-C-CeEEEEEccCCCCCeeeeeccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---D-Y-MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~-~-~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      +.|+.++..     +..+..+           -+-|+.+.|+|+++++|-+   + . ..|++||+.. ++... .+...
T Consensus       427 vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~t  488 (668)
T COG4946         427 VIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTPT  488 (668)
T ss_pred             EEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCCc
Confidence            999999874     3333222           1579999999999999974   2 2 7899999984 44433 22222


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      ...               ++-+|.||+++|.--+
T Consensus       489 a~D---------------fsPaFD~d~ryLYfLs  507 (668)
T COG4946         489 AYD---------------FSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ccc---------------cCcccCCCCcEEEEEe
Confidence            111               2678999999887443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.08  E-value=8.4e-08  Score=80.29  Aligned_cols=271  Identities=13%  Similarity=0.106  Sum_probs=155.4

Q ss_pred             CCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccc
Q 010287          204 VSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANME  278 (513)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~  278 (513)
                      .|.+.++++...+.......++    .....+..+.|..   ++. .++-+ ..|.|.++..........+..++...+.
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             ccceEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence            4556666665554433111111    1223355666643   344 33344 5899999977644433333222111111


Q ss_pred             cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEE
Q 010287          279 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS  357 (513)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~  357 (513)
                        .....++.|++.+ ..++++-.+|.+.+-+.....+  +....            ++.|.-+.+...|+. +..++.+
T Consensus       121 --~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l--e~vq~------------wk~He~E~Wta~f~~~~pnlvyt  183 (339)
T KOG0280|consen  121 --VVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVL--EKVQT------------WKVHEFEAWTAKFSDKEPNLVYT  183 (339)
T ss_pred             --heeeeEEEeeccC-ceEEEEcCCCcEEEEecceeee--eeccc------------ccccceeeeeeecccCCCceEEe
Confidence              1135678899988 7788888899988554333222  11223            344557788888986 4457778


Q ss_pred             EeC-CeEEEEEccCCCCCeee-eecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCCCCccce
Q 010287          358 RDY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAEST  434 (513)
Q Consensus       358 ~~~-~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~  434 (513)
                      |+| +.+..||++.+++.+.. .+.|...               |.++.-+| .+.+++||+.|-.|++||.++-++.+.
T Consensus       184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~G---------------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSG---------------VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             cCCCceEEEEEecCCcceeeecceeeecc---------------eEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            876 99999999964544433 3444433               33555444 677999999999999999996544432


Q ss_pred             eecCCCCceeEEEEcCCCC--ceeeecCCCeEEEecCCCCCccc-cCCccccccCCeeEEEEeCCCCEEEEEc--CCcEE
Q 010287          435 TLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLY  509 (513)
Q Consensus       435 ~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~  509 (513)
                      .- .-.+.|+.+..+|.-.  .|+++-.+|.-.+.......+.. .......|.+-...-.|.....+||+++  ++.++
T Consensus       249 ~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~  327 (339)
T KOG0280|consen  249 KA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR  327 (339)
T ss_pred             cC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence            22 2237899999988644  55565555554431111111101 1122224566677777765567788866  55533


Q ss_pred             -EE
Q 010287          510 -MY  511 (513)
Q Consensus       510 -i~  511 (513)
                       +|
T Consensus       328 ~~W  330 (339)
T KOG0280|consen  328 QLW  330 (339)
T ss_pred             eee
Confidence             44

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=2.8e-09  Score=89.54  Aligned_cols=222  Identities=16%  Similarity=0.153  Sum_probs=128.1

Q ss_pred             CeEEEEeccC---CCEEEEEcCCeEEEEEcCCCcc-------------------ee--------------eecccCccc-
Q 010287          234 HINSISNNSD---GETFISADDLRINLWNLEISNQ-------------------SF--------------NIVDVKPAN-  276 (513)
Q Consensus       234 ~v~~~~~~~~---~~~l~s~~d~~i~vwd~~~~~~-------------------~~--------------~~~~~~~~~-  276 (513)
                      .|..+.|..+   ...|+++.|.+|++|.+.....                   +.              .++-.+|.. 
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            3677777654   3456677999999998864310                   00              001112221 


Q ss_pred             -cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--C
Q 010287          277 -MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--R  353 (513)
Q Consensus       277 -~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~  353 (513)
                       ...|.-.|.++.++.|. ..++ ...|=.|.+|++.-...+   ....+.....     +.+...-|++..|+|..  .
T Consensus       167 yaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~s---FnIVDiKP~n-----meeLteVItSaeFhp~~cn~  236 (460)
T COG5170         167 YANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGS---FNIVDIKPHN-----MEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             ccccceeEeeeeeecCch-heee-eccceeeeeccccccCCc---eEEEeccCcc-----HHHHHHHHhhcccCHhHcce
Confidence             24577778999999886 5554 457789999998653321   2222211110     23333568888999943  3


Q ss_pred             EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287          354 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES  433 (513)
Q Consensus       354 ~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  433 (513)
                      ++.+.+.|.|++-|++...-+...-+..+.....+..-+-...+..|..+.|+++|+++++-+. -++++||....+..+
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi  315 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI  315 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence            4445556999999998421111111000000000000011122334568999999999987765 579999998776665


Q ss_pred             eeecCCC------------Cce---eEEEEcCCCCceeeecCCCeEEE
Q 010287          434 TTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       434 ~~~~~~~------------~~v---~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++..|.            ..|   ..+.|+.+.+.+.+|+.....-+
T Consensus       316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence            5554322            222   24677888888888876655444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.07  E-value=1.9e-08  Score=85.88  Aligned_cols=196  Identities=9%  Similarity=0.043  Sum_probs=139.9

Q ss_pred             cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ..+++++.+.++...|+.| ..|++.-+.+...-.....    ++....|...+..+-|+-.. .++++.+.|..+.---
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc  142 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHC  142 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEe
Confidence            3568889999999999999 7999998876532221111    12456789999999998876 8999999998887555


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC-CCCCeeeeeccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~-~~~~~~~~~~~~~~~~~~  388 (513)
                      .+.+.....+  .+...               .+++.+.-.  +...|+. |.|.+-.+.. .-.++.++.+|...    
T Consensus       143 ~e~~~~lg~Y--~~~~~---------------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----  199 (404)
T KOG1409|consen  143 TESGNRLGGY--NFETP---------------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----  199 (404)
T ss_pred             eccCCcccce--Eeecc---------------CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc----
Confidence            5555432221  11111               111111111  3344554 6665555432 14566777777765    


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                 +.+++|.|....|++|..|..+.+||+-........+.+|...|..+...+--+.|.+++.||.|.+
T Consensus       200 -----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  200 -----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             -----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence                       4599999999999999999999999998776666889999999999988888889999999999988

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.07  E-value=1.2e-06  Score=78.96  Aligned_cols=252  Identities=10%  Similarity=0.063  Sum_probs=135.2

Q ss_pred             cCCCceEEEe-e---------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          123 SANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       123 ~~~~~~l~s~-s---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|++.++++ +         .+..|.+||..+.+......+...|....        .......+++|||+.+.+    
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~--------~~~~~~~~ls~dgk~l~V----  121 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV--------GTYPWMTSLTPDNKTLLF----  121 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc--------cCccceEEECCCCCEEEE----
Confidence            4577777776 4         58899999999998776665543322111        112236689999998722    


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCccccc---ceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVA---GCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                            ..-..+..+.+.|+...+...+.   .|...+           ..+ +...++-+.||......+...++... 
T Consensus       122 ------~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy-----------~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~-  182 (352)
T TIGR02658       122 ------YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF-----------PTA-NDTFFMHCRDGSLAKVGYGTKGNPKI-  182 (352)
T ss_pred             ------ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE-----------Eec-CCccEEEeecCceEEEEecCCCceEE-
Confidence                  12234677888888765542211   111111           111 12222223333333333332222110 


Q ss_pred             cccCccccccccCCe-EEEEEeC-CCCeEEEEEeCCCcEEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEE
Q 010287          270 VDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i-~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      ...  ..+.....++ ..-.|.+ ++ .++....+ |.|.+.|+......... ...+.......     .-..+.+.-+
T Consensus       183 ~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~-----~wrP~g~q~i  253 (352)
T TIGR02658       183 KPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD-----GWRPGGWQQV  253 (352)
T ss_pred             eee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccccc-----ccCCCcceeE
Confidence            000  0000000000 0014456 66 55555555 99999997554322111 11111110000     0011344559


Q ss_pred             EEeecCCEEEEEe---------C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEE
Q 010287          347 KFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVAT  414 (513)
Q Consensus       347 ~~sp~~~~l~~~~---------~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~  414 (513)
                      +++|+++.++...         +  +.|.++|..+ .+.+..+.....                +..++++||++ +|++
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKPLLYA  316 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCeEEEE
Confidence            9999998888732         1  5899999987 777776654332                24899999999 7776


Q ss_pred             Ee-CCCcEEEEecCCCCc
Q 010287          415 GS-YSNLFRVFGCSEGSA  431 (513)
Q Consensus       415 ~~-~dg~i~vwd~~~~~~  431 (513)
                      .. .++.|.++|..+++.
T Consensus       317 tn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       317 LSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             eCCCCCcEEEEECcCCeE
Confidence            65 678899999998743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.6e-07  Score=85.45  Aligned_cols=291  Identities=13%  Similarity=0.179  Sum_probs=158.3

Q ss_pred             cccccccEEEEEEcCCCCEEEeecC-----------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   99 (513)
                      ...| ..|.-+.|||+.+||+|=+.           ...++|||+.++...                       ..|..-
T Consensus       246 RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-----------------------rsF~~~  301 (698)
T KOG2314|consen  246 RFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-----------------------RSFPVI  301 (698)
T ss_pred             hccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-----------------------cceecc
Confidence            3446 47899999999999998652           246999999988753                       111110


Q ss_pred             CCcccccccccccccc-eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287          100 EPEFDYLKSLEIEEKI-NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (513)
Q Consensus       100 ~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (513)
                      ..          ...+ --..|  +.|+.++|.-.. .+|.||+...-.+.....+....               .....
T Consensus       302 ~~----------~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g---------------Ir~Fs  353 (698)
T KOG2314|consen  302 KS----------PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG---------------IRDFS  353 (698)
T ss_pred             CC----------CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCCcc---------------ccCcc
Confidence            00          0112 23467  568778877655 55889987764433332222211               11345


Q ss_pred             eccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c---C--
Q 010287          179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---D--  252 (513)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d--  252 (513)
                      |+|.+..+..    ++....-.+..   +.+..+.....      +++. .-|.-.=..+.|-.+|.+|+.- +   .  
T Consensus       354 wsP~~~llAY----wtpe~~~~par---vtL~evPs~~~------iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~  419 (698)
T KOG2314|consen  354 WSPTSNLLAY----WTPETNNIPAR---VTLMEVPSKRE------IRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSK  419 (698)
T ss_pred             cCCCcceEEE----EcccccCCcce---EEEEecCccce------eeec-cceeeeccEEEeccCCcEEEEEEEeecccc
Confidence            5665544311    11111111111   11111111111      1110 0111001135677788888763 1   1  


Q ss_pred             -----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eC--CCcEEEEEcCCcccccccceee
Q 010287          253 -----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SS--KGSIRLIDMRQSALCDTHSKLF  324 (513)
Q Consensus       253 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~--dg~i~vwd~~~~~~~~~~~~~~  324 (513)
                           ..+-|+.++.....+..        ......|...+|-|.| +.|++- +.  ..++.+|-+.+.....+.++.+
T Consensus       420 ~~g~f~n~eIfrireKdIpve~--------velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~  490 (698)
T KOG2314|consen  420 VKGQFSNLEIFRIREKDIPVEV--------VELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL  490 (698)
T ss_pred             ccceEeeEEEEEeeccCCCcee--------eecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence                 12445555543333322        2346778999999999 544443 33  3578888877532222223333


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccCCCCCee-eeecccccccccccccccCCccc
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      +.              ...+.+.|+|.|++++.+.   . |.+.++|+.. ..... ....|..                
T Consensus       491 dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~----------------  539 (698)
T KOG2314|consen  491 DK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA----------------  539 (698)
T ss_pred             cc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------------
Confidence            32              3478899999999999753   3 8999999874 11111 1111221                


Q ss_pred             eeeEEEeCCCCEEEEEeC------CCcEEEEecC
Q 010287          400 KFECCLSGDGGRVATGSY------SNLFRVFGCS  427 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~------dg~i~vwd~~  427 (513)
                      .+.+.|.|.|+|++|++.      |.--++|++.
T Consensus       540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            247899999999999876      3445677766

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.03  E-value=2.9e-09  Score=99.67  Aligned_cols=288  Identities=15%  Similarity=0.222  Sum_probs=181.4

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      -.+++.++..+|.|+-+|.++.-| +.+-|+...-.                   ..+....+..              -
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp--------------w   68 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP--------------W   68 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc--------------c
Confidence            457889999999999999999887 55666654321                   1111121111              2


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|..+.|+|.+...+-++......-.+|++....-                                             
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~---------------------------------------------  103 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS---------------------------------------------  103 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCc---------------------------------------------
Confidence            37778898876666766666666667888754321                                             


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                 .                 .....+.+|...|+.+.|++.. ..++++ -|..+..||++.....+... 
T Consensus       104 -----------~-----------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-  154 (1081)
T KOG0309|consen  104 -----------N-----------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-  154 (1081)
T ss_pred             -----------c-----------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-
Confidence                       1                 1112357999999999999964 456667 59999999999877665432 


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-  350 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-  350 (513)
                            ..-......++|+...+..+| .+....|++||++.+...   ..            .+++|...|..+.|.. 
T Consensus       155 ------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---l~------------s~K~~vs~vn~~~fnr~  212 (1081)
T KOG0309|consen  155 ------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---LC------------SLKGHVSSVNSIDFNRF  212 (1081)
T ss_pred             ------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---eE------------EecccceeeehHHHhhh
Confidence                  222344678999987755554 567789999999987642   11            1345667888888876 


Q ss_pred             -cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC--EEE---------EEeCC
Q 010287          351 -NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVA---------TGSYS  418 (513)
Q Consensus       351 -~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------~~~~d  418 (513)
                       .++.+-+..|++|+.||.....+.........               ++++.-++.|=|+  +++         ----+
T Consensus       213 ~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~---------------~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~  277 (1081)
T KOG0309|consen  213 KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN---------------FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE  277 (1081)
T ss_pred             hhhhhcccCCCCceeeecccccccccceecccc---------------CcceeccccccCceeEeccccCCeeeeecccc
Confidence             23333345569999999875222111111111               1123334444322  221         11123


Q ss_pred             CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC----------ceeeecCCCeEEE
Q 010287          419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP----------SRPLGSLSGVVRR  466 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~~~~~d~~i~~  466 (513)
                      +....|+..++...+.++.+|...|....|...+.          .|++=+.|..+++
T Consensus       278 n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl  335 (1081)
T KOG0309|consen  278 NSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL  335 (1081)
T ss_pred             chhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence            33445666666666788999999888777753322          5788899999998

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.02  E-value=4.5e-07  Score=81.77  Aligned_cols=121  Identities=9%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             ecc-CCCEEEEEcCCeEEEEEcCCCcce----eeecccCccccccccCCeEEEEEeCCCCeEEEEEe---------CCCc
Q 010287          240 NNS-DGETFISADDLRINLWNLEISNQS----FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------SKGS  305 (513)
Q Consensus       240 ~~~-~~~~l~s~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------~dg~  305 (513)
                      |.+ +++++..+.+|+|.+.|+......    +.++......-......+.-++++|++.++++...         ..+.
T Consensus       201 ~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       201 YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence            455 888888886699999997543221    11111100000112334445999999844444331         2258


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeee
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF  378 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~  378 (513)
                      |.++|..+++.    +..+...             ..+..++++||++ +|++.+  .+.|.++|..+ ++.+..+
T Consensus       281 V~ViD~~t~kv----i~~i~vG-------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i  338 (352)
T TIGR02658       281 LFVVDAKTGKR----LRKIELG-------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV  338 (352)
T ss_pred             EEEEECCCCeE----EEEEeCC-------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence            99999988876    3333322             3688999999999 777655  38899999986 7777766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=5e-09  Score=94.93  Aligned_cols=244  Identities=17%  Similarity=0.155  Sum_probs=138.2

Q ss_pred             ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      ..|+.+|.++.|-.+.++++++ ||-|.+||.-.+..+.++.+-   .-.+-.+.|.|+.-- +..-+++.++...+|++
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLENV-DRHILIAGCSAESTVKL  855 (1034)
T ss_pred             hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEecccC-cchheeeeccchhhhee
Confidence            6899999999999998888876 466999998766654433211   112223344444321 22234555578999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      +|.|.....    ..++.-+.+       +..+-+++++..+.|.+++++-. |.|.+.|.++ ++.+..++.-+..   
T Consensus       856 ~DaRsce~~----~E~kVcna~-------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecd---  920 (1034)
T KOG4190|consen  856 FDARSCEWT----CELKVCNAP-------GPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECD---  920 (1034)
T ss_pred             eecccccce----eeEEeccCC-------CCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccch---
Confidence            999987652    223322211       12256899999999999998754 9999999997 7766655433221   


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE-EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                  ...++ .|..+.|+....|.++.+ |....+.. ....+....|..  ....-|..|++......+.+
T Consensus       921 ------------llqla-apsdq~L~~saldHslaVnWhaldgim-h~q~kpppepah--flqsvgpSLV~a~~Gn~lgV  984 (1034)
T KOG4190|consen  921 ------------LLQLA-APSDQALAQSALDHSLAVNWHALDGIM-HLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGV  984 (1034)
T ss_pred             ------------hhhhc-CchhHHHHhhcccceeEeeehhcCCee-eeccCCCCcchh--hhhccCceeEEeccCcEEEE
Confidence                        00122 355567777778888888 87765522 222332222211  11223445555554445555


Q ss_pred             e-cCCCCCcccc--CCccccccCCeeEEEEeCCCCEEEEEc-CCcE
Q 010287          467 V-KGADNSALDA--NGNAFDFSMKLLHLAWHPSENSIACAA-SNSL  508 (513)
Q Consensus       467 ~-~~~~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~  508 (513)
                      + +..+......  ....-++.+..++++--|-..-+..|. .+.+
T Consensus       985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen  985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred             EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence            1 1111110000  111123456677787777654444443 4443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=1.7e-07  Score=88.70  Aligned_cols=413  Identities=11%  Similarity=0.057  Sum_probs=195.8

Q ss_pred             ccccccEEEEEEcCC------------CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287           32 VQEVDIISAIEFDKS------------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~------------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   99 (513)
                      ..|...|+.+.|.|-            .-+||+++..|+|.+||......+                       ..++.|
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~  108 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHS  108 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCC
Confidence            357899999999873            136899999999999998765532                       345556


Q ss_pred             CCcccccccccccccceeEEEeecCCCc--eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287          100 EPEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (513)
Q Consensus       100 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (513)
                      .            ++|..++|.|..+..  .|++-....++.+|+..+|+...........-..+....     .....+
T Consensus       109 ~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP-----fd~rh~  171 (1062)
T KOG1912|consen  109 N------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP-----FDSRHF  171 (1062)
T ss_pred             C------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC-----CCcceE
Confidence            6            889999999865543  455557788999999999876554433221100000000     000011


Q ss_pred             eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEe-eccccC---------CeEEEEeccCCCE-
Q 010287          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIY-AHAHDY---------HINSISNNSDGET-  246 (513)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~h~~---------~v~~~~~~~~~~~-  246 (513)
                      .++-.+..+-..      ++.-....+...+.+.+...........+... ...+..         -...++|+|.-+. 
T Consensus       172 ~~l~s~g~vl~~------~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  172 CVLGSKGFVLSC------KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             EEEccCceEEEE------eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            111111111000      00000111112222222111000000000000 000000         0124567776444 


Q ss_pred             EEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccc-cceee
Q 010287          247 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDT-HSKLF  324 (513)
Q Consensus       247 l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~  324 (513)
                      ++..--..+.++|++-......+      .++  .+.+.-+.+-|+.. ..+++.-.||.+.+|-.+......+ ....+
T Consensus       246 lfi~~prellv~dle~~~~l~vv------pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l  317 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVV------PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL  317 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEE------Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence            44446778999999855443322      222  33455566666642 4678888999999997544211000 00000


Q ss_pred             cc--ccCCCCccccccccccEEEEEEeecCCE-EEE-EeCCeEEEEEccCCCCCeeeeecc-------------ccc--c
Q 010287          325 EE--QEAPGTRSFFTEIIASISDIKFARNGRH-ILS-RDYMTLKLWDINMDSGPVATFQVH-------------EHL--R  385 (513)
Q Consensus       325 ~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~-~~~~~v~iwd~~~~~~~~~~~~~~-------------~~~--~  385 (513)
                      ..  .+.-........  -.+......|..+- ++. -++|.+.+|.+.+ ++.-......             ...  .
T Consensus       318 ~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~~~~v~k  394 (1062)
T KOG1912|consen  318 SMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLSTKLVGK  394 (1062)
T ss_pred             ccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCceeehhh
Confidence            00  000000000000  01111222343222 221 2346777888774 2211111000             000  0


Q ss_pred             cccccccccCC-cccee-----------eEEEeCCC-------CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287          386 PKLCDLYENDS-IFDKF-----------ECCLSGDG-------GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ  446 (513)
Q Consensus       386 ~~~~~~~~~~~-~~~v~-----------~~~~s~~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  446 (513)
                      ..+.++...+. ..+.+           ...-.|-+       ..++.|+..|+|.++|+.++ .....+..|...|..+
T Consensus       395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~Vkgl  473 (1062)
T KOG1912|consen  395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGL  473 (1062)
T ss_pred             ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeee
Confidence            00000000000 00000           11111222       26789999999999999987 5557888999999999


Q ss_pred             EEcCCCCceeeecC-----CCeE----EE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          447 VQTPSRPSRPLGSL-----SGVV----RR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       447 ~~~~~~~~l~~~~~-----d~~i----~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      -|.....++-.+..     .|.+    .+  ...+...  .+.+....-..+|+.+.-|..+++||..-
T Consensus       474 eW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk--~fR~l~~~despI~~irvS~~~~yLai~F  540 (1062)
T KOG1912|consen  474 EWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK--RFRGLQKPDESPIRAIRVSSSGRYLAILF  540 (1062)
T ss_pred             eeccceeEEEeeeccccccccceeeeEEEEEccccccc--ccccCCCCCcCcceeeeecccCceEEEEe
Confidence            88766555432211     1111    11  1111111  12222233468999999999999999764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=3.4e-09  Score=99.23  Aligned_cols=186  Identities=17%  Similarity=0.229  Sum_probs=128.4

Q ss_pred             eEEEEeccC--CC-EEEEEcCCeEEEEEcCCCc-ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          235 INSISNNSD--GE-TFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       235 v~~~~~~~~--~~-~l~s~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      |-...|++.  .. .+++.+...-.+|++.... +.+++      .+-+|...|+.+.|+|..+..+++++.|-.+..||
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd  143 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD  143 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeee
Confidence            334455553  22 3444355666789886443 22332      45789999999999999999999999999999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      +++...   +++.+..-.            .....+.|+- ++..+++.....|.+||.+.++.++..+++|...+    
T Consensus       144 ~rSp~~---p~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v----  204 (1081)
T KOG0309|consen  144 MRSPHR---PFYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV----  204 (1081)
T ss_pred             ccCCCc---ceeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee----
Confidence            998543   233333211            3456788986 56666666668999999999888999988865542    


Q ss_pred             cccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          390 DLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                                 ..++|..- ...+++.+.||+|++||.+..............++..-.+.|-|.-..
T Consensus       205 -----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  205 -----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             -----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence                       24555431 235778899999999998866444444455667788878887766443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.99  E-value=3.8e-07  Score=82.31  Aligned_cols=326  Identities=12%  Similarity=0.077  Sum_probs=185.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      -++..++|+|  .|.+|++....+ |.+|.-........  +...               ...-+.++|.+++|......
T Consensus        33 ~p~~~~~~SP--~G~~l~~~~~~~-V~~~~g~~~~~l~~--~~~~---------------~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          33 WPVAYVSESP--LGTYLFSEHAAG-VECWGGPSKAKLVR--FRHP---------------DVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             cchhheeecC--cchheehhhccc-eEEccccchhheee--eecC---------------CceecccCcccceeeeeccC
Confidence            5688899955  787888876655 88898766542111  1111               11145688888887654322


Q ss_pred             CC--CCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeE-EEEeccCCCEEEEEcCCeEEEEEcCCCcceee
Q 010287          193 AS--NDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNSDGETFISADDLRINLWNLEISNQSFN  268 (513)
Q Consensus       193 ~~--~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~  268 (513)
                      ..  .+...++ ..++.+.+||...+........+.     ...-.+ -+.|+.+.++.+---...+.++++ +......
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~  166 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEH  166 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccC-----CcccccceeeeeecchhhhhhccCeEEEEec-CCccccC
Confidence            22  2333333 233478999987766533221111     011122 577888887776545677999997 3332210


Q ss_pred             ecccCccccccc-cCCeEEEEEeCCCC-eEEEE-----EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          269 IVDVKPANMEDL-TEVITSAEFHPTHC-NMLAY-----SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       269 ~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                             .+... ...|....|+|.+. ..|+.     ...++.+++|.+..+..... ...++               .
T Consensus       167 -------p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~lfk---------------~  223 (561)
T COG5354         167 -------PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KNLFK---------------V  223 (561)
T ss_pred             -------chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-eeeEe---------------e
Confidence                   11111 35678888888631 22332     34567888888875443211 11111               1


Q ss_pred             cEEEEEEeecCCEEEEE------------eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          342 SISDIKFARNGRHILSR------------DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~------------~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      .=..+.|.+.|.+|+.-            ++..++++++..  .-+.....-.+.               |...+|.|.+
T Consensus       224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~p---------------Vhdf~W~p~S  286 (561)
T COG5354         224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDP---------------VHDFTWEPLS  286 (561)
T ss_pred             cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceecccccc---------------ceeeeecccC
Confidence            22457888889887741            115677777762  222222111222               5589999998


Q ss_pred             CEEEEE--eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC---CeEEEecCCCCCccccCCccccc
Q 010287          410 GRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS---GVVRRVKGADNSALDANGNAFDF  484 (513)
Q Consensus       410 ~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~  484 (513)
                      +.+++.  -.+-.+.++|++..    .........-+.+.|+|.+++++.++.|   |.+.+   +.+.+.......+ -
T Consensus       287 ~~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i---~~~~~rf~~~~~~-~  358 (561)
T COG5354         287 SRFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI---FDPAGRFKVAGAF-N  358 (561)
T ss_pred             CceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEE---eccCCceEEEEEe-e
Confidence            876644  46788999998854    2333344455678999999999987766   55555   2222100000000 0


Q ss_pred             cCCeeEEEEeCCCCEEEEEc-------CCcEEEEe
Q 010287          485 SMKLLHLAWHPSENSIACAA-------SNSLYMYY  512 (513)
Q Consensus       485 ~~~i~~~~~sp~~~~la~~~-------~~~~~i~~  512 (513)
                      .....-+.|+||+.++-++.       |+++.||.
T Consensus       359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             cCCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence            12345568999999977553       67777775

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=7.8e-07  Score=93.39  Aligned_cols=189  Identities=13%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             eEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc------cccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          235 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       235 v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ...++++|+ +..+++. .++.|++||..++....-.-+.......      ..-.....++++|++..++++-+.++.|
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            457899995 4455554 6899999998754321100000000001      1123457899999984477777778999


Q ss_pred             EEEEcCCcccccc---------cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee
Q 010287          307 RLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA  376 (513)
Q Consensus       307 ~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~  376 (513)
                      ++||+.++.....         ....+........    ...-.....++++++|.++++-.. +.|++||..+ +. +.
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~  838 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VT  838 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EE
Confidence            9999987542100         0000000000000    001123468999999987777555 9999999874 33 33


Q ss_pred             eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      .+.+...... ...............++++++|+++++-+.++.|++||+.++.
T Consensus       839 tiaG~G~~G~-~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        839 TLAGTGKAGF-KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEeccCCcCC-CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            3322111000 0000000111112378999999988888899999999998764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.96  E-value=1.3e-06  Score=82.49  Aligned_cols=182  Identities=9%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287          246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  323 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  323 (513)
                      .++.+ .++.|..||.++++...+.....+ ..+...    .+.... +  ..++.+..++.+..+|+++++...+..  
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~----~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~--  217 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS----ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQR--  217 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC----CCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeec--
Confidence            44444 789999999988776554311000 000000    111122 2  356777888999999999887643211  


Q ss_pred             eccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                      +........   .    ..+..+.-+|  .+..++.++ ++.+..||..+ ++.+-.......                 
T Consensus       218 ~~~~~g~~~---~----~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~-----------------  272 (377)
T TIGR03300       218 VALPKGRTE---L----ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDASSY-----------------  272 (377)
T ss_pred             cccCCCCCc---h----hhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeeccCCc-----------------
Confidence            100000000   0    0000011111  234555544 59999999986 665543331110                 


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ....  .++..++.++.||.++.+|..+++.+ -..+. ..........  .+..+++++.+|.+.+
T Consensus       273 ~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       273 QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW  334 (377)
T ss_pred             cCce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence            0122  24567888889999999999888432 22211 1111112122  3568888889999888

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=9.2e-09  Score=93.26  Aligned_cols=295  Identities=15%  Similarity=0.183  Sum_probs=173.4

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      -.+.+|+..|..++--.+.+-+++++.|.+|++|.++.....                .....+..+++.|+        
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----------------~~tsaCQfTY~aHk--------  784 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----------------IGTSACQFTYQAHK--------  784 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----------------cccceeeeEhhhcc--------
Confidence            357899999999887667788999999999999998654321                00112445678888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          .+|+++-|..  +.+  ..++.|+.|.+||.--+.......-.  +                              
T Consensus       785 ----k~i~~igfL~--~lr--~i~ScD~giHlWDPFigr~Laq~~da--p------------------------------  824 (1034)
T KOG4190|consen  785 ----KPIHDIGFLA--DLR--SIASCDGGIHLWDPFIGRLLAQMEDA--P------------------------------  824 (1034)
T ss_pred             ----Ccccceeeee--ccc--eeeeccCcceeecccccchhHhhhcC--c------------------------------
Confidence                8899999964  422  44567899999998766532211100  0                              


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcce
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  266 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~  266 (513)
                                                             ..+-.+.|.|+. +-+...++.+  ...+|+++|.+..+-.
T Consensus       825 ---------------------------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~  864 (1034)
T KOG4190|consen  825 ---------------------------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT  864 (1034)
T ss_pred             ---------------------------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence                                                   001112233331 1133444444  4899999998865533


Q ss_pred             eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      .++.   -..-.+-...+++++..+.| +.++.+-.+|.|.+.|.|+|...    ..|..-+            -....+
T Consensus       865 ~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrpme------------cdllql  924 (1034)
T KOG4190|consen  865 CELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRPME------------CDLLQL  924 (1034)
T ss_pred             eeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCccc------------chhhhh
Confidence            2211   01223445678899999999 99999999999999999999863    2222111            011111


Q ss_pred             EEeecCCEEEE-EeCCeEEE-EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          347 KFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       347 ~~sp~~~~l~~-~~~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      + .|..+.|+. +.+.++.+ |.... +......+....+.                 --.-.-|.-|+++...+.+.+|
T Consensus       925 a-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepa-----------------hflqsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  925 A-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPA-----------------HFLQSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             c-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcch-----------------hhhhccCceeEEeccCcEEEEE
Confidence            1 245556664 44566776 76543 33222222222110                 0011234557777777777777


Q ss_pred             ecCCCCccc---eee--cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          425 GCSEGSAES---TTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       425 d~~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .-.......   ..+  ....+..++++.-|-..-++.|+..|.|.+
T Consensus       986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            532211111   111  122345567788888888888888888876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.91  E-value=3.1e-06  Score=89.05  Aligned_cols=223  Identities=10%  Similarity=0.101  Sum_probs=130.4

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc--Ccccccc-------ccCCeEEEEEeCCCCeEEEEEeC
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--KPANMED-------LTEVITSAEFHPTHCNMLAYSSS  302 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~  302 (513)
                      ....++++++++.|+.+  ..+.|+++|+.++. ...+...  ......+       .-.....++++|++..++++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            35789999988877776  46889999987543 2111100  0000000       01234689999954478888888


Q ss_pred             CCcEEEEEcCCcccccccceeeccccCCCCc---cccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeee
Q 010287          303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~  377 (513)
                      ++.|++||..++..     ..+.+.......   ......-.....|+++|++..|++++ + +.|++||+.+ +.. ..
T Consensus       704 ~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~-~~  776 (1057)
T PLN02919        704 QHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS-RL  776 (1057)
T ss_pred             CCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-EE
Confidence            99999999877643     222111000000   00001113467799999998666554 3 8999999885 332 11


Q ss_pred             eecccc-ccccccccccc------CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-------------
Q 010287          378 FQVHEH-LRPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-------------  437 (513)
Q Consensus       378 ~~~~~~-~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------  437 (513)
                      +.+... .......+...      .....-..++++++|+++++-+.++.|++||..++...  ++.             
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCCCCccc
Confidence            111000 00000000000      00011137899999998888889999999999865221  221             


Q ss_pred             -CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          438 -ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       438 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       +.......++++++|+.+++.+.++.|++
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence             12234568899999999898889999988

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.88  E-value=5.7e-08  Score=84.89  Aligned_cols=80  Identities=16%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .+|-..++.++|+||++.|+++ .|..|++-........ +      .-.-+|...|..++.-++  +.|++++.|++++
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-e------sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-E------SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-h------hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            5888889999999999999999 5999998876532211 1      123679999999999987  4699999999999


Q ss_pred             EEEcCCcccc
Q 010287          308 LIDMRQSALC  317 (513)
Q Consensus       308 vwd~~~~~~~  317 (513)
                      +||+++++..
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=4.5e-07  Score=85.47  Aligned_cols=179  Identities=11%  Similarity=0.043  Sum_probs=108.4

Q ss_pred             CeEEEEeccCCCE-EEE-E-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcE
Q 010287          234 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI  306 (513)
Q Consensus       234 ~v~~~~~~~~~~~-l~s-~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i  306 (513)
                      ......|+|+|+. ++. . .  +..|.++|+.+++..         .+....+......|+||+..++++.+.+  ..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            5678999999984 553 3 2  467889999866532         1222344456788999995555555555  457


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeeccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .++|+.++..     +.+...            ........|+|||+.|+-.++    ..|.+.|+.. ++. +.+....
T Consensus       260 y~~dl~~g~~-----~~LT~~------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g  320 (419)
T PRK04043        260 YLYDTNTKTL-----TQITNY------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG  320 (419)
T ss_pred             EEEECCCCcE-----EEcccC------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence            7778766543     111111            111234579999998886543    3677777764 333 2222111


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCC---------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP  453 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  453 (513)
                      ..                 ...|+|||++|+..+..         ..|.+.|+.++...  .+... .......|+|+|+
T Consensus       321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~  380 (419)
T PRK04043        321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG  380 (419)
T ss_pred             Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence            11                 24799999998865543         36888898877432  22222 1233578999999


Q ss_pred             ceeeecC
Q 010287          454 SRPLGSL  460 (513)
Q Consensus       454 ~l~~~~~  460 (513)
                      .++....
T Consensus       381 ~I~f~~~  387 (419)
T PRK04043        381 SIMFIKY  387 (419)
T ss_pred             EEEEEEc
Confidence            8876653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=1.6e-06  Score=72.93  Aligned_cols=182  Identities=17%  Similarity=0.175  Sum_probs=109.3

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccc-c-ccccCCeEEEEEeCCC-----CeEEEEEeCCCc
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSSSKGS  305 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~  305 (513)
                      .-+.++|+||+..|+.+ +.|+|+++|+.. ..++.+   .|.. . ..-...|..+.|.+..     ...|+.-..+|.
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            35689999999999999 799999999983 333322   2211 1 1223566677665432     135666778888


Q ss_pred             EEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C--C---------eEEEEEccCCC
Q 010287          306 IRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--M---------TLKLWDINMDS  372 (513)
Q Consensus       306 i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~--~---------~v~iwd~~~~~  372 (513)
                      ++=|-+..+.. .-+....+..         ...+...|.++.++|..++|+.|+ .  .         -+..|.+-. +
T Consensus       121 L~Sy~vs~gt~q~y~e~hsfsf---------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~  190 (282)
T PF15492_consen  121 LRSYLVSVGTNQGYQENHSFSF---------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-D  190 (282)
T ss_pred             eeeEEEEcccCCcceeeEEEEe---------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-C
Confidence            88777643211 0011112211         122346899999999988888753 1  1         367787764 4


Q ss_pred             CCeeee-eccccccc------c---ccc--cc--ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          373 GPVATF-QVHEHLRP------K---LCD--LY--ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       373 ~~~~~~-~~~~~~~~------~---~~~--~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      .+.... ...+....      .   +..  ++  ..+....|+.|..||||+.||+...+|.|.+|++.+-
T Consensus       191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            333221 11111000      0   000  11  1122234679999999999999999999999999865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.5e-06  Score=82.07  Aligned_cols=177  Identities=9%  Similarity=0.029  Sum_probs=105.2

Q ss_pred             CeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-
Q 010287          283 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-  358 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-  358 (513)
                      ......|+|++...++..+.+   ..|.++|+.+++..     .+..            ..+......|+|||+.|+.. 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~lt~------------~~g~~~~~~~SPDG~~la~~~  251 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KIAS------------SQGMLVVSDVSKDGSKLLLTM  251 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EEec------------CCCcEEeeEECCCCCEEEEEE
Confidence            677899999994345544443   46888898877541     1111            11345667899999877753 


Q ss_pred             e-C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCcc
Q 010287          359 D-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE  432 (513)
Q Consensus       359 ~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~  432 (513)
                      + +  ..|.++|+.. +. ...+..+...               .....|+|||+.|+..+. .+  .|++.|+.++...
T Consensus       252 ~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~---------------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        252 APKGQPDIYLYDTNT-KT-LTQITNYPGI---------------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             ccCCCcEEEEEECCC-Cc-EEEcccCCCc---------------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            2 2  6788888764 33 4444333221               014679999998776553 33  5778888876443


Q ss_pred             ceeecCCCCceeEEEEcCCCCceeeecCC-------C--eEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEE
Q 010287          433 STTLEASKNPMRRQVQTPSRPSRPLGSLS-------G--VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       433 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~--~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                      ..+..+..    ...|+|+|++|+.....       +  .|.++  .+....  .+..     ........|+|||+.|+
T Consensus       315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-----~~~~~~p~~SPDG~~I~  383 (419)
T PRK04043        315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-----NGVNQFPRFSSDGGSIM  383 (419)
T ss_pred             eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-----CCCcCCeEECCCCCEEE
Confidence            33332221    24899999998876543       2  34442  222221  1111     12334689999999988


Q ss_pred             EEc
Q 010287          502 CAA  504 (513)
Q Consensus       502 ~~~  504 (513)
                      ..+
T Consensus       384 f~~  386 (419)
T PRK04043        384 FIK  386 (419)
T ss_pred             EEE
Confidence            554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=8.4e-07  Score=79.40  Aligned_cols=169  Identities=9%  Similarity=0.064  Sum_probs=120.1

Q ss_pred             CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-cEEEEEcCCcccccccc
Q 010287          243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHS  321 (513)
Q Consensus       243 ~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~  321 (513)
                      +|.+++..+.|...+.+...+- .++         .++...|.-..+..+. +-++.|..|| .+-++|.++++.     
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~-~iq---------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-----  394 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGY-SIQ---------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-----  394 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCe-eEE---------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----
Confidence            5788888788888888876433 222         3466778888888777 6788999999 999999998773     


Q ss_pred             eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                      +.++..            -+.|.++..+|+|++++++.+ ..+.+.|+.+ +.....-+.....               |
T Consensus       395 kr~e~~------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~l---------------I  446 (668)
T COG4946         395 KRIEKD------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGL---------------I  446 (668)
T ss_pred             EEeeCC------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEecccccce---------------e
Confidence            222222            267999999999999999988 9999999986 5443322222222               5


Q ss_pred             eeEEEeCCCCEEEEEeCCC----cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          401 FECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      +...|+|+++++|-+--+|    .|++||+..++ .. .......--.+-+|.|++++|..
T Consensus       447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy-~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IY-DVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EE-EecCCcccccCcccCCCCcEEEE
Confidence            6899999999999776554    68999999763 32 22222223346678888887643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3.4e-07  Score=81.30  Aligned_cols=325  Identities=14%  Similarity=0.158  Sum_probs=194.3

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      -|.+.|+.+.-+ -.+++.+++.||.++.|.-....                    -..+.+.+..|-            
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------   53 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------   53 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence            478888887644 35799999999999999843211                    123556677777            


Q ss_pred             ccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      ..|.+++.  +-++..+.+.+. |..++++|+++-.......+...|+...               .+...|.       
T Consensus        54 ~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~---------------wv~skGd-------  109 (558)
T KOG0882|consen   54 GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE---------------WVTSKGD-------  109 (558)
T ss_pred             HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE---------------EecCCCC-------
Confidence            77888887  457778888777 9999999999877665555444332110               0000110       


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC-cceee-
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQSFN-  268 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~-~~~~~-  268 (513)
                       ....+.++.-.++.+.++|-.....     +...+-.-|..+|.++.+++.+..+++. ..|.|.-|..... +..-. 
T Consensus       110 -~~s~IAVs~~~sg~i~VvD~~~d~~-----q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~  183 (558)
T KOG0882|consen  110 -KISLIAVSLFKSGKIFVVDGFGDFC-----QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN  183 (558)
T ss_pred             -eeeeEEeecccCCCcEEECCcCCcC-----ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc
Confidence             0011223334556666665432211     1222335788999999999999999998 5999999988731 10000 


Q ss_pred             -ecccCc----cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc-ccCCCCcc--------
Q 010287          269 -IVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRS--------  334 (513)
Q Consensus       269 -~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~--------  334 (513)
                       .++++.    ..+..-.....++.|+|++ ..+.+-+.|..|++++++++++....--.... +..+....        
T Consensus       184 l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg  262 (558)
T KOG0882|consen  184 LNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG  262 (558)
T ss_pred             ccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh
Confidence             011111    1122335667899999999 89999999999999999998864221000000 00000000        


Q ss_pred             -------ccccc-cccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccC-----------
Q 010287          335 -------FFTEI-IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND-----------  395 (513)
Q Consensus       335 -------~~~~~-~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  395 (513)
                             -+..| ...-..+.|...+.+|+.|+---|++.++.+ +...+.+...+..+.....+|+..           
T Consensus       263 RRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~  341 (558)
T KOG0882|consen  263 RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVA  341 (558)
T ss_pred             hhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhh
Confidence                   00111 1234567788899999998875689999986 665555433332111111111100           


Q ss_pred             -CccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          396 -SIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       396 -~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                       ...+  .+.+.+|..+++++-..+.+++|
T Consensus       342 a~~np--~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  342 ASNNP--LLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hccCc--ccccCCCCeEEEeeeecceEEEE
Confidence             0001  23466777788888888888888

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.79  E-value=1.7e-07  Score=77.09  Aligned_cols=72  Identities=24%  Similarity=0.382  Sum_probs=60.0

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-
Q 010287          283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-  360 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-  360 (513)
                      .|++++-+|...+++++|+.||.+-+||.|+....               ...+..|+.+++.+-|+| ++..|+++++ 
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            38999999988788899999999999999986431               223667788999999999 7788888775 


Q ss_pred             CeEEEEEcc
Q 010287          361 MTLKLWDIN  369 (513)
Q Consensus       361 ~~v~iwd~~  369 (513)
                      |.+..||..
T Consensus       246 Gslw~wdas  254 (319)
T KOG4714|consen  246 GSLWHWDAS  254 (319)
T ss_pred             CcEEEEcCC
Confidence            999999976

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.78  E-value=7.9e-08  Score=99.07  Aligned_cols=184  Identities=12%  Similarity=0.160  Sum_probs=134.4

Q ss_pred             cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      .+-..|.++.=+|...+.++| .||.+++|....+++....      . ......|+.+.|+.+| +.+..+..||.+.+
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCceee
Confidence            444668888888888888888 7999999998877665432      1 2223889999999999 89999999999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE---eC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      |.... +    ....++.            |......+.|-.  ..++++   ++ +.+.+||...+...-..-..|.+.
T Consensus      2278 ~q~~p-k----~~~s~qc------------hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2278 WQASP-K----PYTSWQC------------HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred             cccCC-c----ceecccc------------CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence            99762 1    1333333            334566666654  566653   34 999999976533322222566654


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV  464 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  464 (513)
                                     ++.+++.|..+.|++|+.+|.|++||++.. +++..++.         +. ...++++|+..|.+
T Consensus      2339 ---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2339 ---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred             ---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccce
Confidence                           458999999999999999999999999866 33344433         33 66789999999999


Q ss_pred             EE
Q 010287          465 RR  466 (513)
Q Consensus       465 ~~  466 (513)
                      +|
T Consensus      2393 kI 2394 (2439)
T KOG1064|consen 2393 KI 2394 (2439)
T ss_pred             EE
Confidence            99

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=1.7e-06  Score=82.17  Aligned_cols=256  Identities=14%  Similarity=0.146  Sum_probs=159.0

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      .--.++.|+|.| +||.|+.. .|.+-|..+-+.                       ...+.-|.            ..|
T Consensus        16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~-----------------------iqsie~h~------------s~V   58 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQL-----------------------IQSIELHQ------------SAV   58 (1062)
T ss_pred             ccccccccCccc-eEEEecCc-eEEEEehhhhhh-----------------------hhccccCc------------cce
Confidence            336788999987 78888865 688888655443                       24455565            789


Q ss_pred             eeEEEeecC----------CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          116 NKIRWCQSA----------NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       116 ~~i~~~~~~----------~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                      +.++|.|-+          ..-.++++...|.|.+||...+.....                                  
T Consensus        59 ~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~----------------------------------  104 (1062)
T KOG1912|consen   59 TSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW----------------------------------  104 (1062)
T ss_pred             eEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh----------------------------------
Confidence            999998722          112455566679999999877643221                                  


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEE--cCCeEEEEEc
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA--DDLRINLWNL  260 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~--~d~~i~vwd~  260 (513)
                                                                +..|.+++..++|-+   +.+.+..+  ....|.+|+.
T Consensus       105 ------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt  142 (1062)
T KOG1912|consen  105 ------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT  142 (1062)
T ss_pred             ------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence                                                      234556677777754   44344444  6899999999


Q ss_pred             CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC---c--cc
Q 010287          261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---R--SF  335 (513)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~--~~  335 (513)
                      .+++..++        .........|+.+.|-+.+.+...+..|.+.+-+.-.........+.+....+...   .  ..
T Consensus       143 dtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~  214 (1062)
T KOG1912|consen  143 DTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET  214 (1062)
T ss_pred             cCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence            99887664        22234456779999977777877788888877765433222222222222111000   0  00


Q ss_pred             cc--ccc---------ccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          336 FT--EII---------ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       336 ~~--~~~---------~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                      ..  .+.         -....++|+|.-+.++-... ..+.++|++. ..++.......+...               -+
T Consensus       215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak---------------fv  278 (1062)
T KOG1912|consen  215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK---------------FV  278 (1062)
T ss_pred             hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------ee
Confidence            00  000         01233567885554444333 7899999986 667766665554322               35


Q ss_pred             EEeCCC--CEEEEEeCCCcEEEEecCC
Q 010287          404 CLSGDG--GRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       404 ~~s~~~--~~l~~~~~dg~i~vwd~~~  428 (513)
                      .+-|++  ..|++.-.||.+.+|-.+.
T Consensus       279 ~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  279 DVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EeccCCCcceEEEEecCCeEEEEEeec
Confidence            666665  4788999999999997765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=1.9e-07  Score=81.78  Aligned_cols=158  Identities=11%  Similarity=0.184  Sum_probs=96.2

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEEE
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLID  310 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vwd  310 (513)
                      ...+..++.+++++.+ ++....++++.......++++.     .......+.+.|..+. .....+..-|   .+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence            3455677888999988 6777667777644432222111     0111122333333333 2222222222   333333


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee-eccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKL  388 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~  388 (513)
                      ...+                 ......+|..-+..++|+||+++|++++. ..|++-.... ...+..+ -+|...++  
T Consensus       139 ~~~~-----------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS--  198 (390)
T KOG3914|consen  139 ADSG-----------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS--  198 (390)
T ss_pred             cccc-----------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence            2211                 11225788899999999999999999985 9999988774 3344443 45776643  


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                   .++.-++ ..|++++.|++|++||+.+++.+
T Consensus       199 -------------~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  199 -------------TISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -------------eeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence                         6666644 55899999999999999999554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.72  E-value=2.5e-06  Score=70.76  Aligned_cols=230  Identities=9%  Similarity=-0.015  Sum_probs=134.6

Q ss_pred             CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287          244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      ..+|+.| ..|...+|...+.+....+.+       .|...|+-+.=.-+....+..++.|.++++.++.-+...     
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-----  151 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-----  151 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence            4567777 799999999987665444322       122211111101111134666788999998887654321     


Q ss_pred             eeccccCCCCccccccccc--cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287          323 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                                   +..|..  .+.++++++|++++++.+| ..|..|.+..+++-+.........          +.   
T Consensus       152 -------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~---  205 (344)
T KOG4532|consen  152 -------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DH---  205 (344)
T ss_pred             -------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CC---
Confidence                         011112  2788999999999999776 999999998655444332211111          00   


Q ss_pred             eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc----eeecCCCCceeEEEEcCCCCc--eeeecCCCeEEEecCCCCC
Q 010287          400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADNS  473 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~  473 (513)
                      -++..|+.....+|+++.||.+.|||++......    .+-..|.+.++.+.|++-|.+  |...-.-+.+.+.+.....
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            1378899999999999999999999998753322    222357889999999986542  3222223334441111111


Q ss_pred             ccc---cCCc-cccc-cCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          474 ALD---ANGN-AFDF-SMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       474 ~~~---~~~~-~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      ..+   ...+ .+.| +..|..-.|+.++.-+-++++....-|
T Consensus       286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~  328 (344)
T KOG4532|consen  286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEY  328 (344)
T ss_pred             eeeEEecCccccccccccccccccccCCCcccccccchhhhee
Confidence            101   0000 1122 234777788887776666665544444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.72  E-value=4.2e-05  Score=67.36  Aligned_cols=145  Identities=11%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             CeEEEEeccCCCEEEEE-cC--------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          234 HINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      ..+.+++.++|++.++. ..        |.|..++.. ++ ...        +...-...+.++|+|++..++++-+..+
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~--------~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTV--------VADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEE--------EEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEE--------EecCcccccceEECCcchheeecccccc
Confidence            37889999999977764 21        456666665 22 211        1223455789999999944556777889


Q ss_pred             cEEEEEcCCcccccccceee-ccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287          305 SIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .|..+++..........+.+ +...          ..+..-.+++..+|.+.++.-. +.|.+++.+  ++.+..+....
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~----------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~  224 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPG----------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV  224 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SS----------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred             eeEEEeccccccceeeeeeEEEcCC----------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence            99999986432211111222 1111          1134788999999988887655 999999977  77777776653


Q ss_pred             ccccccccccccCCccceeeEEEe-CCCCEEEEE
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVATG  415 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~  415 (513)
                      ..               +++++|. ++.+.|+..
T Consensus       225 ~~---------------~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  225 PR---------------PTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             SS---------------EEEEEEESTTSSEEEEE
T ss_pred             CC---------------EEEEEEECCCCCEEEEE
Confidence            22               3589994 666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=0.0001  Score=64.90  Aligned_cols=184  Identities=16%  Similarity=0.185  Sum_probs=106.5

Q ss_pred             eEEEEec-cCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCC--------C
Q 010287          235 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G  304 (513)
Q Consensus       235 v~~~~~~-~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g  304 (513)
                      ...+++. +++ .|+.+..+.+.++|+.+++.. .+...   .... .....+.+++.|+| ++.++....        |
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~-~~~~~---~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVT-VLADL---PDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTCEEEEETTTTEEE-EEEEE---ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCC-EEEEEEcCceEEEecCCCcEE-EEeec---cCCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence            5567777 554 555554455566688865422 22111   0011 34567899999999 777766543        4


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeee--c
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQ--V  380 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~--~  380 (513)
                      .|..++.. ++.    ......             ....+.|+|+|+++.|+..+ . +.|..|++...+..+....  .
T Consensus       116 ~v~~~~~~-~~~----~~~~~~-------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~  177 (246)
T PF08450_consen  116 SVYRIDPD-GKV----TVVADG-------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI  177 (246)
T ss_dssp             EEEEEETT-SEE----EEEEEE-------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceEEECCC-CeE----EEEecC-------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence            56666655 332    111111             13578899999999887655 3 8999999875333222111  1


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE-cCCCCce
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSR  455 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l  455 (513)
                      +......        .   .-.+++..+|++.++....+.|.+++.+ + +....+......+..++| -++.+.|
T Consensus       178 ~~~~~~g--------~---pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  178 DFPGGPG--------Y---PDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             E-SSSSC--------E---EEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             EcCCCCc--------C---CCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            1100000        0   1168999999988887788999999988 4 444555544457778888 3554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.69  E-value=4.2e-05  Score=64.65  Aligned_cols=231  Identities=16%  Similarity=0.181  Sum_probs=120.9

Q ss_pred             EEeccCCCEEEEEcCCeEEEEEcCCCccee-eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287          238 ISNNSDGETFISADDLRINLWNLEISNQSF-NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       238 ~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      ++.+.+|+.||.-.|..|-+-..+..-... ....    .-+.-.-.-+.++|+||+ .+||.+...|+|++||+....+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcq----VpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l   77 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQ----VPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL   77 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEe----cCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee
Confidence            566789999988888888777655322111 1000    011112234789999999 9999999999999999865432


Q ss_pred             ccccceeeccccCCCCccccccccccEEEEEEeec-------CCEEEEEeCCeEEEEEccC----CCCCeeeeecccccc
Q 010287          317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-------GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLR  385 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-------~~~l~~~~~~~v~iwd~~~----~~~~~~~~~~~~~~~  385 (513)
                           ..+.....     ........|..+.|-+-       .++|+..-.|.++-|-+..    ..+....+...... 
T Consensus        78 -----f~I~p~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y-  146 (282)
T PF15492_consen   78 -----FVIPPAMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY-  146 (282)
T ss_pred             -----EEcCcccc-----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC-
Confidence                 22222110     11122356777777542       2344444457777666532    11222222221111 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCc-----------EEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-----------FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS  454 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----------i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  454 (513)
                                 ..+|.++.++|..++|+.|+....           +.-|.+-++..           -.....+.+...
T Consensus       147 -----------p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~  204 (282)
T PF15492_consen  147 -----------PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDI  204 (282)
T ss_pred             -----------CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCccc
Confidence                       113568999999998887764221           33344333311           111111111111


Q ss_pred             eeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          455 RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       455 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      -......+..++...+      +-.........|..|+.||||+.||+.. ++.+.+|.
T Consensus       205 ~~~~~~~~~~~~~~~~------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFK------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             cccccccceeecccee------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence            1111111122220000      0000011256799999999999999777 78888874

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=2.7e-08  Score=95.36  Aligned_cols=220  Identities=13%  Similarity=0.220  Sum_probs=143.3

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+..|....+|++|+-+.++|++|+..|.|++|++.++...                       ....+|.         
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ--------- 1143 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc---------
Confidence            34567889999999999999999999999999999887742                       3456777         


Q ss_pred             cccccceeEEEeecCCCceEEEeec-CC-eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTN-DK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~-d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                         .+|+-+.=  +.+|..+++.+. .. -..+|++..- ....                                    
T Consensus      1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~------------------------------------ 1181 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-GGPR------------------------------------ 1181 (1516)
T ss_pred             ---cccccccc--cCCcceeeeeccccCchHHHhccccc-cCcc------------------------------------
Confidence               78888775  567777776543 22 4567887541 0000                                    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                           ..|     ..-.++.|+...+.-+.| ......+||+++...+
T Consensus      1182 -------------------------------------Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1182 -------------------------------------HSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             -------------------------------------ccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence                                                 000     123467777654433334 4456789999988766


Q ss_pred             eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      .+.+..    ..+....-++..|+|++ .+++   .||  .+||+|..+.    ++.|+....             -..-
T Consensus      1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft~-------------~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFTD-------------YGGG 1272 (1516)
T ss_pred             HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhee-------------cccc
Confidence            543211    11122233788999998 7765   555  4799988654    444443221             1223


Q ss_pred             EEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          347 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       347 ~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                      .|+|.|..++..++    |||+++ .+.++..+.-...                 .+.|+..|..++.
T Consensus      1273 ~FHP~g~eVIINSE----IwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINSE----IWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMYA 1318 (1516)
T ss_pred             cccCCCceEEeech----hhhhHH-HHHHhcCccccce-----------------EEEeccCccchhh
Confidence            58999998887664    999997 6666655443332                 6788888876653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.65  E-value=4.3e-05  Score=66.62  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             ccccCCeEEEEEeCCCCeEEEEEeCCCc-------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          278 EDLTEVITSAEFHPTHCNMLAYSSSKGS-------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                      .-|...|..+++.++| ..++..-..|.       +-+++.  +..    +..+..+..     ......+.+-+|++++
T Consensus       159 ~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~--g~~----~~~~~~p~~-----~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR--GGA----LRLLPAPEE-----QWRRLNGYIGSIAADR  226 (305)
T ss_pred             cccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC--CCc----ceeccCChH-----HHHhhCCceEEEEEeC
Confidence            3477789999999998 55554444332       222321  111    111221111     1233447899999999


Q ss_pred             cCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          351 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       351 ~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      ++.++++.+ . +.+.+||..+ +..+.........                 .++-.+++ ++++.+. |.+
T Consensus       227 ~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~c-----------------Gva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDAC-----------------GVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             CCCEEEEECCCCCEEEEEECCC-CCEeeccccCcee-----------------eeeecCCc-eEEeCCC-ccE
Confidence            999888765 4 9999999986 7776665544422                 55666565 5665554 443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.3e-07  Score=81.04  Aligned_cols=160  Identities=16%  Similarity=0.243  Sum_probs=112.1

Q ss_pred             EeccC--CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287          239 SNNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       239 ~~~~~--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      +|+-+  +-.+.+|.+-.+-+-+++++-+.         .+. ..+.|.++.|...+ +++..|+.+|.|..+|+|.+..
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnq  286 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQ  286 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeeccc
Confidence            55543  33344556778888999877543         333 46778999999887 8999999999999999997632


Q ss_pred             ccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCC---eeeeecccccccccccc
Q 010287          317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDL  391 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~  391 (513)
                      -..    +        ....--|.+.|+++..-. ++++|.+.+. |.|++||++. -+.   +..+.+|......+   
T Consensus       287 G~~----~--------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l---  350 (425)
T KOG2695|consen  287 GNG----W--------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL---  350 (425)
T ss_pred             CCC----c--------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc---
Confidence            100    0        001122456788887766 6788887764 9999999986 555   78888887642211   


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL  436 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  436 (513)
                                -+-..+....++++++|...+||.+..+ .++.++
T Consensus       351 ----------~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~ti  384 (425)
T KOG2695|consen  351 ----------PAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTI  384 (425)
T ss_pred             ----------ccccccccceEEEccCeeEEEEEecccC-ceeecc
Confidence                      2345667778899999999999999988 444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.60  E-value=2.8e-05  Score=73.43  Aligned_cols=304  Identities=10%  Similarity=0.065  Sum_probs=156.7

Q ss_pred             CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCC
Q 010287           46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN  125 (513)
Q Consensus        46 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~  125 (513)
                      .+..+.+++.+|.|..+|..+++..                     ....+.+.-.           ..   +..    +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~~~~-----------~~---p~v----~  104 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDERLS-----------GG---VGA----D  104 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCCCcc-----------cc---eEE----c
Confidence            4668888889999999998877765                     1111111110           11   122    1


Q ss_pred             CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (513)
Q Consensus       126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  205 (513)
                      +..++.++.++.+..+|..+|+..............               ... .++.             ++....++
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---------------p~v-~~~~-------------v~v~~~~g  155 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---------------PLV-ANGL-------------VVVRTNDG  155 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---------------CEE-ECCE-------------EEEECCCC
Confidence            346777888888888888888776655544332100               000 0111             13334556


Q ss_pred             ceeceeeccCCcccccceeeE-e-eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccC
Q 010287          206 SLRLPVVTSQETNLVAGCRRI-Y-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE  282 (513)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~-~-~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  282 (513)
                      .+..+|..+++.......... . ......    .... + ..++.+ .++.+..+|.++++...+.-...+.. .....
T Consensus       156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s----p~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~  228 (377)
T TIGR03300       156 RLTALDAATGERLWTYSRVTPALTLRGSAS----PVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELE  228 (377)
T ss_pred             eEEEEEcCCCceeeEEccCCCceeecCCCC----CEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchh
Confidence            667776655543221110000 0 000001    1111 2 355566 68899999998876554321000000 00000


Q ss_pred             C---e-EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          283 V---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       283 ~---i-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      .   + .+..+.  + ..++.++.+|.+..||..+++....    .+.              .......  .++..++.+
T Consensus       229 ~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~~W~----~~~--------------~~~~~p~--~~~~~vyv~  285 (377)
T TIGR03300       229 RLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRVLWK----RDA--------------SSYQGPA--VDDNRLYVT  285 (377)
T ss_pred             hhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcEEEe----ecc--------------CCccCce--EeCCEEEEE
Confidence            0   0 111122  3 4677788899999999998875332    110              0111111  235555555


Q ss_pred             e-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec
Q 010287          359 D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE  437 (513)
Q Consensus       359 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  437 (513)
                      + +|.+..+|..+ ++.+-.........              ......  .+..|++++.+|.|+++|..++ +++..++
T Consensus       286 ~~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~  347 (377)
T TIGR03300       286 DADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLK  347 (377)
T ss_pred             CCCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEE
Confidence            5 59999999986 65553331111100              001222  4568889999999999999888 4445555


Q ss_pred             CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          438 ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       438 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+..++..--...++ .|..++.||.+..
T Consensus       348 ~~~~~~~~sp~~~~~-~l~v~~~dG~l~~  375 (377)
T TIGR03300       348 TDGSGIASPPVVVGD-GLLVQTRDGDLYA  375 (377)
T ss_pred             cCCCccccCCEEECC-EEEEEeCCceEEE
Confidence            444333222222233 4667777887754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.1e-06  Score=76.46  Aligned_cols=243  Identities=16%  Similarity=0.140  Sum_probs=136.1

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCe-EEE-EEeCCC
Q 010287          229 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLA-YSSSKG  304 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~-~~~~dg  304 (513)
                      ..|...|.+++.+.++..+.+. . |..++++|++.-... ..+     .+......+.. ..++.... .++ +.-.++
T Consensus        50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-nmi-----KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg  122 (558)
T KOG0882|consen   50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI-NMI-----KLVDLPGFAEW-VTSKGDKISLIAVSLFKSG  122 (558)
T ss_pred             HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh-hhc-----ccccCCCceEE-ecCCCCeeeeEEeecccCC
Confidence            5677778899999999999996 5 999999999865432 111     11111222221 12222111 333 334578


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC-C----Ceeee
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS-G----PVATF  378 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~-~----~~~~~  378 (513)
                      .|.++|-+......   ..           +..-|.++|.++.+.|-+..+++.+. |.|.-|....+- .    ....+
T Consensus       123 ~i~VvD~~~d~~q~---~~-----------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~  188 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQD---GY-----------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL  188 (558)
T ss_pred             CcEEECCcCCcCcc---ce-----------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence            99999976543211   11           12336689999999999999998876 999999976211 1    11111


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      +....    +..+...+  ....++.|+|++..+.+-+.|..|++++.+++ ++.+.+......-   ...|...+-+. 
T Consensus       189 K~eTd----Ly~f~K~K--t~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~---~~q~ks~y~l~-  257 (558)
T KOG0882|consen  189 KHETD----LYGFPKAK--TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDA---QYQPKSPYGLM-  257 (558)
T ss_pred             cccch----hhcccccc--cCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhh---hhccccccccc-
Confidence            11111    11111111  11348999999999999999999999999988 3334433211111   11111111000 


Q ss_pred             cCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          459 SLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       459 ~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                          .+.+  +.+.+   .......| +..-+.+.|...+++|.-++-=++.+++
T Consensus       258 ----~Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin  303 (558)
T KOG0882|consen  258 ----HVEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN  303 (558)
T ss_pred             ----eeeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence                0111  11111   00001112 2344677888889999888877777765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=9.5e-08  Score=56.41  Aligned_cols=34  Identities=21%  Similarity=0.435  Sum_probs=32.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE   63 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~   63 (513)
                      ...+|.+.|++++|+|++.+||+|+.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4568999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=4.6e-07  Score=77.71  Aligned_cols=137  Identities=15%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          231 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ..+.|.++.|...++++..| ..|.|..+|++...+-- .   .+...--|.+.|+++..-......|++.+.+|.|++|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~-~---~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN-G---WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-C---cceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            34568888888888888888 89999999998652210 0   0112235888999998877333788999999999999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeeecccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      |+|.-+.. +.++.+++|-...          .-.-+...+....+++ |+|...+||.++. ++.+.+++....
T Consensus       327 D~R~~K~~-~~V~qYeGHvN~~----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~s  389 (425)
T KOG2695|consen  327 DLRATKCK-KSVMQYEGHVNLS----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPYS  389 (425)
T ss_pred             eehhhhcc-cceeeeecccccc----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCCc
Confidence            99875532 2356666654321          1112334455555665 5569999999996 888887765543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.49  E-value=0.0002  Score=62.63  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=113.7

Q ss_pred             EEeccCCCEEEEE------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe----------
Q 010287          238 ISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------  301 (513)
Q Consensus       238 ~~~~~~~~~l~s~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------  301 (513)
                      -+|++||++|++.      ..|.|-|||...+-....       .+..|.-....+.+.||+ ..|+.+-          
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-------E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~G  127 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-------EFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSG  127 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-------EecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccC
Confidence            3599999999986      268899999983322222       456666667788899998 4555442          


Q ss_pred             --------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-------eEEE
Q 010287          302 --------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-------TLKL  365 (513)
Q Consensus       302 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-------~v~i  365 (513)
                              ++..+.+.|.++|++..+    ...+        -.-|..+|..+++.++|..++...+ |       -|-+
T Consensus       128 R~kLNl~tM~psL~~ld~~sG~ll~q----~~Lp--------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~  195 (305)
T PF07433_consen  128 RAKLNLDTMQPSLVYLDARSGALLEQ----VELP--------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVAL  195 (305)
T ss_pred             ceecChhhcCCceEEEecCCCceeee----eecC--------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEE
Confidence                    122333444445544221    1110        0235568999999999998887543 2       2334


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCcee
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMR  444 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~  444 (513)
                      ++.   +..+..+.........+. -|       +-++++++++.++++.+ ..+.+.+||..++..+ ..  ..-..+.
T Consensus       196 ~~~---g~~~~~~~~p~~~~~~l~-~Y-------~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~-~~--~~l~D~c  261 (305)
T PF07433_consen  196 HRR---GGALRLLPAPEEQWRRLN-GY-------IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL-GS--VPLPDAC  261 (305)
T ss_pred             EcC---CCcceeccCChHHHHhhC-Cc-------eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe-ec--cccCcee
Confidence            432   333433333222111110 01       33899999998886555 7889999999988322 11  1123344


Q ss_pred             EEEEcCCCCceeeecCCCeEEE
Q 010287          445 RQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       445 ~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++..+++ ++++.+....+.+
T Consensus       262 Gva~~~~~-f~~ssG~G~~~~~  282 (305)
T PF07433_consen  262 GVAPTDDG-FLVSSGQGQLIRL  282 (305)
T ss_pred             eeeecCCc-eEEeCCCccEEEc
Confidence            55666665 7777766555555

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.46  E-value=7.5e-06  Score=67.70  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             cEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCC
Q 010287          342 SISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYS  418 (513)
Q Consensus       342 ~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  418 (513)
                      .|.+++-+|..+ .+++|++ |.+-+||.+....+...+..|...               ++.+-|+| ++..|+++++|
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~---------------i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE---------------IWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh---------------hhheeccCCCchheeEecCC
Confidence            488999999555 4555666 999999999755666777777765               44889998 56789999999


Q ss_pred             CcEEEEecCC
Q 010287          419 NLFRVFGCSE  428 (513)
Q Consensus       419 g~i~vwd~~~  428 (513)
                      |.+.-||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.45  E-value=0.0001  Score=64.67  Aligned_cols=154  Identities=13%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             CCEEEEEcCCeEEEEEcCCCcceeeecccCcccccccc-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287          244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       244 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      +..++...++.|..+|..+++...+.....   ..... .......+.  + ..++.+..++.|..+|+++|+...+   
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~---  147 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWK---  147 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred             cccccccceeeeEecccCCcceeeeecccc---ccccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence            333333467899999988888766521100   00011 111122222  4 5778888899999999999987433   


Q ss_pred             eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCe-EEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                       ........... +. ....+..-....++ .++.++ ++. +.+ |+.+ ++.+-... ....                
T Consensus       148 -~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~----------------  204 (238)
T PF13360_consen  148 -YPVGEPRGSSP-IS-SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI----------------  204 (238)
T ss_dssp             -EESSTT-SS---EE-EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred             -eecCCCCCCcc-ee-eecccccceEEECC-EEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence             22211000000 00 00111222222245 444444 554 555 8886 54332222 1111                


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                       ......++..|+.++.++.|..||+++++
T Consensus       205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             -cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence             12245677888888899999999999983

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.44  E-value=4.5e-05  Score=76.76  Aligned_cols=239  Identities=14%  Similarity=0.125  Sum_probs=131.5

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      +.|.++.|..+...++.+ ..|.|.+-|.++....  +       ...-...|.+++|+||+ .+++..+.++++.+-+ 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--i-------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT-  137 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--I-------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMT-  137 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee--e-------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe-
Confidence            568999999988888887 7999999988755432  1       23346779999999999 8888888877776643 


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      .+-.....  +.+.....         -.+....+-|-.... =+-|+.|.....+.....+.+.....+..        
T Consensus       138 ~~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrkeT-qfrgs~gr~~~~~~~~~ek~~~~~~~~~~--------  197 (1265)
T KOG1920|consen  138 KDFEPIAE--KPLDADDE---------RKSKFVNVGWGRKET-QFRGSEGRQAARQKIEKEKALEQIEQDDH--------  197 (1265)
T ss_pred             ccccchhc--cccccccc---------cccccceecccccce-eeecchhhhcccccccccccccchhhccC--------
Confidence            22111110  00100000         001222233322111 11122222221111110111111111111        


Q ss_pred             cccCCccceeeEEEeCCCCEEEEE-----eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee---cCCCe
Q 010287          392 YENDSIFDKFECCLSGDGGRVATG-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG---SLSGV  463 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~  463 (513)
                              -+.++|--||+++++.     .....|+|||.+ + .+..+-+....--.++.|.|.|.++|+-   ..|+.
T Consensus       198 --------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  198 --------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             --------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence                    1279999999999873     333789999987 3 3323333333444578999999999875   34555


Q ss_pred             EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE---EcCCc-EEEEe
Q 010287          464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY  512 (513)
Q Consensus       464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~---~~~~~-~~i~~  512 (513)
                      |.+.+...+.-.++......-..++..++|+.++..||+   ...+. +.+|.
T Consensus       268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            666222222211111111111344999999999999997   44555 88875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.00017  Score=70.15  Aligned_cols=127  Identities=13%  Similarity=0.146  Sum_probs=80.0

Q ss_pred             cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ..++.+++++.+-+.++.| .+|.|..+.-+-.+....    +..-......+|+.+.+..++ ..++....-..|.+|.
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----r~~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~  199 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----RQDYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLYS  199 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----ceeeeccCCCCceeeEEecCC-ceeEEEEecceeEEEE
Confidence            3568889999999999999 899999884321111100    001122346889999999888 4423344556788898


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeee
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~  379 (513)
                      +......   ...            +..|...+.|..+++....++++....+.+|+... ..+...+.
T Consensus       200 l~gr~p~---~~~------------ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~  252 (933)
T KOG2114|consen  200 LSGRTPS---LKV------------LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFE  252 (933)
T ss_pred             ecCCCcc---eee------------eccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeec
Confidence            8633210   111            23344678999998755545555556899999874 44444444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.40  E-value=0.00039  Score=70.37  Aligned_cols=112  Identities=17%  Similarity=0.273  Sum_probs=72.2

Q ss_pred             EEEEeccCCCEEEEE-----cC-CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC---CCcE
Q 010287          236 NSISNNSDGETFISA-----DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSI  306 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i  306 (513)
                      ..++|--||+++++.     .+ ..|++||.+ +... .       .-......=.+++|-|.| .++++-..   |+.|
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-s-------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-S-------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDI  268 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-c-------ccCcccccccceeecCCC-CeEeeeeecCCCCcE
Confidence            468999999999983     24 899999987 3211 1       011122333589999988 78776543   5678


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE---EeC-CeEEEEEccC
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS---RDY-MTLKLWDINM  370 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~---~~~-~~v~iwd~~~  370 (513)
                      .+|. ++|-........+...            ...+..++|+.++..|++   ... ..|++|-+.+
T Consensus       269 vffE-rNGL~hg~f~l~~p~d------------e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  269 VFFE-RNGLRHGEFVLPFPLD------------EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             EEEe-cCCccccccccCCccc------------ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            8887 4444322111111111            134899999999999997   233 5599999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.37  E-value=1e-06  Score=51.88  Aligned_cols=34  Identities=35%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      .+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            568899999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.35  E-value=0.0016  Score=61.16  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          279 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      .....|.+++++|+. ..++.|+.||.|.+||...+...     ..+.             .-..+.++|+|+|.++++|
T Consensus       257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~-----~~ka-------------~~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL-----LAKA-------------EFIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee-----eeee-------------cccceEEEEcCCCcEEEEE
Confidence            457789999999998 89999999999999998765321     1111             1246889999999999999


Q ss_pred             eC-CeEEEEEccC
Q 010287          359 DY-MTLKLWDINM  370 (513)
Q Consensus       359 ~~-~~v~iwd~~~  370 (513)
                      ++ |.+.+||+..
T Consensus       318 s~qGelQ~FD~AL  330 (545)
T PF11768_consen  318 SEQGELQCFDMAL  330 (545)
T ss_pred             cCCceEEEEEeec
Confidence            98 9999999975

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.34  E-value=0.001  Score=63.14  Aligned_cols=183  Identities=10%  Similarity=0.033  Sum_probs=90.9

Q ss_pred             EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287          246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  323 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  323 (513)
                      .++.+ .++.+.-+|.++++...+.....+ ..+.....++    .. ++  .++.++.+|.+..+|..+++...+..  
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~--  232 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQR--  232 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EE-CC--EEEEEcCCCEEEEEEccCChhhheec--
Confidence            34444 688888899888876655311000 0001111111    11 22  46667789999999999887644311  


Q ss_pred             eccccCCCCccccccccccEEEEEEee---cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                      +........   +    .....+.-+|   ++..++.+.++.+..+|..+ ++.+-.......                 
T Consensus       233 ~~~~~~~~~---~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~-----------------  287 (394)
T PRK11138        233 ISQPTGATE---I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV-----------------  287 (394)
T ss_pred             cccCCCccc---h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence            000000000   0    0011111122   34444444458999999986 654433221110                 


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ..+.  .++..|+.++.+|.+..+|..+++.+-..-..........++  .+..+..++.||.+..
T Consensus       288 ~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        288 NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence            0111  245677778889999999998874321111000011111111  2456677788888876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=2.1e-05  Score=75.57  Aligned_cols=192  Identities=14%  Similarity=0.167  Sum_probs=121.6

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ....+.++|++++  ++++|-|+.+|.|++++......                         ..-.|.           
T Consensus        36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s-----------   77 (846)
T KOG2066|consen   36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS-----------   77 (846)
T ss_pred             HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc-----------
Confidence            3456888888887  57999999999999999654321                         111222           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       ..        ..+|.++++||.||+|.|-.+.+.+......+                                     
T Consensus        78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-------------------------------------  111 (846)
T KOG2066|consen   78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-------------------------------------  111 (846)
T ss_pred             -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEec-------------------------------------
Confidence             11        45788999999999999988877654333221                                     


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-----CCEEEEEc-CCeEEEEEcCCCcc
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISAD-DLRINLWNLEISNQ  265 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~-d~~i~vwd~~~~~~  265 (513)
                                                              ..++.+++++|+     .+.+++|+ .| +.++.-+--+.
T Consensus       112 ----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn  150 (846)
T KOG2066|consen  112 ----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN  150 (846)
T ss_pred             ----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence                                                    134778888887     56788874 55 77775432222


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ...+      .+....++|.++.|..   +++|-++.+| |++||+.+++..    ..++.+......      ......
T Consensus       151 k~~v------~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l----~~i~~p~~~~R~------e~fpph  210 (846)
T KOG2066|consen  151 KDSV------VLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRL----TNIPPPSQSVRP------ELFPPH  210 (846)
T ss_pred             ccce------eeecCccceEEEEecC---cEEEEecCCC-cEEEecccccee----eccCCCCCCCCc------ccCCCc
Confidence            1111      2344578999999975   6788876665 899999877642    222222111000      123345


Q ss_pred             EEEeecCCEEEEEeCCeEEEEEcc
Q 010287          346 IKFARNGRHILSRDYMTLKLWDIN  369 (513)
Q Consensus       346 i~~sp~~~~l~~~~~~~v~iwd~~  369 (513)
                      +.|.++.++++ |-..+|+|..++
T Consensus       211 l~W~~~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  211 LHWQDEDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             eEecCCCeEEE-ecCCeEEEEEEe
Confidence            77876655444 444578888887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=3.8e-05  Score=74.19  Aligned_cols=72  Identities=10%  Similarity=0.051  Sum_probs=48.0

Q ss_pred             CCceeEEEEcCCCCceeeecCCCeEEE-ec-CCCCCccc-----cCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          440 KNPMRRQVQTPSRPSRPLGSLSGVVRR-VK-GADNSALD-----ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~-~~~~~~~~-----~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      ...+.+++++..+..|+.|...|.+.+ .+ +....+.+     ......+..+.|+.+.|.|-.+.+|+.+...+++.
T Consensus       303 ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll  381 (1416)
T KOG3617|consen  303 GEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLL  381 (1416)
T ss_pred             CCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeee
Confidence            356789999999999999999999888 11 11111111     11112234678999999998888887776655553

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.0002  Score=63.39  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceee
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK  149 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  149 (513)
                      ..|..++|+|...| ++..++.+++|+|.|+++..+.
T Consensus       194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~v  229 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVV  229 (463)
T ss_pred             hhhhhhccCccccc-eeeeeccCceEEEEecccceee
Confidence            78999999886553 7888999999999999987544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.24  E-value=2.1e-06  Score=79.97  Aligned_cols=211  Identities=15%  Similarity=0.210  Sum_probs=125.5

Q ss_pred             ccccEEEEEEcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           34 EVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        34 h~~~V~~v~~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ....+.|++++-+  ..++++|..+|.|.+-........                     -.....+|.           
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a-----------  102 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA-----------  102 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc-----------
Confidence            3467788886654  458999999999999886543320                     000112333           


Q ss_pred             cccceeEEEeecCCCceEEEe----ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          112 EEKINKIRWCQSANSALYLLS----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                       ...++++|++- |.+.|+.|    -.|-.+.|||+.++-........                                
T Consensus       103 -r~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~--------------------------------  148 (783)
T KOG1008|consen  103 -RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL--------------------------------  148 (783)
T ss_pred             -ccccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccccc--------------------------------
Confidence             77999999753 44566665    23667999999876321110000                                


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                 +++                            +......+++|..+.+.+.+| ....+.++|++.....
T Consensus       149 -----------fs~----------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~  189 (783)
T KOG1008|consen  149 -----------FSS----------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS  189 (783)
T ss_pred             -----------ccc----------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence                       100                            011234578888888888888 6889999999833211


Q ss_pred             eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE-cCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ..         .-.+..+..+...|-.++++++- .||.|-+|| .++-+   .++......+.+.+        ..+..
T Consensus       190 ~~---------svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnie---npl~~i~~~~N~~~--------~~l~~  248 (783)
T KOG1008|consen  190 VS---------SVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIE---NPLQIILRNENKKP--------KQLFA  248 (783)
T ss_pred             hh---------hhhhhhcccceecCCCCCceecc-ccCceeeccchhhhc---cHHHHHhhCCCCcc--------cceee
Confidence            11         11233566777888444666654 499999999 33322   11222221111111        25889


Q ss_pred             EEEeecC-CEEEEE-eC-CeEEEEEccC
Q 010287          346 IKFARNG-RHILSR-DY-MTLKLWDINM  370 (513)
Q Consensus       346 i~~sp~~-~~l~~~-~~-~~v~iwd~~~  370 (513)
                      ++|+|.. ..+++. .+ ++|++||+..
T Consensus       249 ~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  249 LAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             EEeccCCcchhhhhccCcceEEEecccc
Confidence            9999943 334443 34 9999999874

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=0.00014  Score=70.02  Aligned_cols=149  Identities=15%  Similarity=0.159  Sum_probs=98.2

Q ss_pred             ccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC----CCeEEEEEeCCCcEEEEEcCCcc
Q 010287          241 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSA  315 (513)
Q Consensus       241 ~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~  315 (513)
                      .-+|+++++| .||+|.|-.+-+.+...+         .....++.+++++|+    ..+.+++|+..| +.++.-+--.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCcccee---------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            3469999999 799999998887665432         224678999999998    226899999999 7776533211


Q ss_pred             cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287          316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND  395 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (513)
                      ..   ...           .+..-.++|.++.|.  |.++|=++|-.|++||+.. ++.+..++.....+.  .+.+.  
T Consensus       150 nk---~~v-----------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp--  208 (846)
T KOG2066|consen  150 NK---DSV-----------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP--  208 (846)
T ss_pred             Cc---cce-----------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC--
Confidence            10   000           122334789999996  7899988886799999986 665555544332211  11111  


Q ss_pred             CccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                           ..+.|.++.+. +.|-.| +|+|..++
T Consensus       209 -----phl~W~~~~~L-VIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  209 -----PHLHWQDEDRL-VIGWGD-SVKICSIK  233 (846)
T ss_pred             -----CceEecCCCeE-EEecCC-eEEEEEEe
Confidence                 16788877654 444443 68888877

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.00053  Score=65.09  Aligned_cols=137  Identities=9%  Similarity=-0.002  Sum_probs=77.7

Q ss_pred             CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287          243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       243 ~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      ++..++.+.++.+..+|..+++...+.      .+.    ....+..  .+ ..++.++.+|.+..+|..+++...+...
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~  322 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD  322 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence            344444447899999999988765542      111    1112222  23 4667778899999999998875432110


Q ss_pred             eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287          323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                       ...              ....+...  .+..++.++ +|.|.+.|..+ ++.+...........              .
T Consensus       323 -~~~--------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s  370 (394)
T PRK11138        323 -LLH--------------RLLTAPVL--YNGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------S  370 (394)
T ss_pred             -cCC--------------CcccCCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------e
Confidence             000              00111111  244555555 59999999986 777666544321100              0


Q ss_pred             eEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          402 ECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      ...+  .+..|+.++.||.|+.+++
T Consensus       371 ~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        371 EPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE--ECCEEEEEeCCceEEEEeC
Confidence            1122  2447888899999988764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.00061  Score=64.97  Aligned_cols=124  Identities=14%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .|...|.--+++..+++++.|+.-|.+++|+..+++..                      .....+-+            
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------   76 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------   76 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------
Confidence            45667777778888999999999999999998877642                      01111211            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..+..+..+  .+..+++.|+..|.|.++.+..+..... .+                                      
T Consensus        77 ~~~~~~~vs--~~e~lvAagt~~g~V~v~ql~~~~p~~~-~~--------------------------------------  115 (726)
T KOG3621|consen   77 GITCVRSVS--SVEYLVAAGTASGRVSVFQLNKELPRDL-DY--------------------------------------  115 (726)
T ss_pred             ceEEEEEec--chhHhhhhhcCCceEEeehhhccCCCcc-ee--------------------------------------
Confidence            334445553  3555777778888898888776321100 00                                      


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  262 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~  262 (513)
                            ++                         ..-..|...|++++|++++..+++| +.|+|..-.+..
T Consensus       116 ------~t-------------------------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 ------VT-------------------------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ------ec-------------------------cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                  00                         0013477889999999999999999 699999888875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.08  E-value=0.0069  Score=56.45  Aligned_cols=251  Identities=9%  Similarity=0.053  Sum_probs=115.5

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeec-ccCccccccc---------cCCeEEEEEeCCCCeEEEEEe-
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV-DVKPANMEDL---------TEVITSAEFHPTHCNMLAYSS-  301 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~---------~~~i~~~~~~~~~~~~l~~~~-  301 (513)
                      ..+....|+|+|+.++...++.|.+++..++. ..++. +.....+.+-         -+.-..+-|+||+ +.|+... 
T Consensus        43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~  120 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRF  120 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEE
T ss_pred             cccccceeecCCCeeEEEecCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEEE
Confidence            34677889999999999988999999887553 22221 1000000000         1223568899999 5555544 


Q ss_pred             CCCcEEEEEcCCccccc------c--------------cceeeccccCCCCc-c---ccccccccEEEEEEeecCC-EEE
Q 010287          302 SKGSIRLIDMRQSALCD------T--------------HSKLFEEQEAPGTR-S---FFTEIIASISDIKFARNGR-HIL  356 (513)
Q Consensus       302 ~dg~i~vwd~~~~~~~~------~--------------~~~~~~~~~~~~~~-~---~~~~~~~~v~~i~~sp~~~-~l~  356 (513)
                      .+..|+.+.+.......      .              .+..++........ .   .+..-...+..+.|.++++ +++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            44555544332111000      0              00111111110000 0   0112245788999999998 444


Q ss_pred             E-Ee-C---CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEe-CCCC-EEEEEeCCCcEEEEecCC
Q 010287          357 S-RD-Y---MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       357 ~-~~-~---~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~~~~~dg~i~vwd~~~  428 (513)
                      . .+ +   ..+.++|..+ +....... .....+..            -....|. +++. +|.....||.-+||-+..
T Consensus       201 ~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~------------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDV------------YDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSS------------SSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             EEcccCCCEEEEEEEECCC-CceeEEEEecCCcceee------------ecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            3 22 2   4556667664 33322221 11222110            0145554 5555 444555777655554443


Q ss_pred             CCccceeecCCCCceeE-EEEcCCCCcee-eecC----CCeEEEecCC-CCCccccCCccccccCCe-eEEEEeCCCCEE
Q 010287          429 GSAESTTLEASKNPMRR-QVQTPSRPSRP-LGSL----SGVVRRVKGA-DNSALDANGNAFDFSMKL-LHLAWHPSENSI  500 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~----d~~i~~~~~~-~~~~~~~~~~~~~~~~~i-~~~~~sp~~~~l  500 (513)
                      .......+......|.. +.+.++++.+. ++..    ...+..+... ...     ..++...... ..++|||+++++
T Consensus       268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----~~~LT~~~~~~~~~~~Spdg~y~  342 (353)
T PF00930_consen  268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----PKCLTCEDGDHYSASFSPDGKYY  342 (353)
T ss_dssp             TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----EEESSTTSSTTEEEEE-TTSSEE
T ss_pred             cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----eEeccCCCCCceEEEECCCCCEE
Confidence            33333344444555644 56677766543 3333    2233332112 111     0111122222 599999999998


Q ss_pred             EEE
Q 010287          501 ACA  503 (513)
Q Consensus       501 a~~  503 (513)
                      +..
T Consensus       343 v~~  345 (353)
T PF00930_consen  343 VDT  345 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            843

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.07  E-value=0.00041  Score=64.99  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      +.+.+++++|+...++.|. ||.|.+||... +  +.......-.               .+.++|+|+|.++++|+..|
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~---------------P~~iaWHp~gai~~V~s~qG  321 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAEFI---------------PTLIAWHPDGAIFVVGSEQG  321 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeeccc---------------ceEEEEcCCCcEEEEEcCCc
Confidence            6799999999998888866 69999999874 2  1111111111               23799999999999999999


Q ss_pred             cEEEEecCCC
Q 010287          420 LFRVFGCSEG  429 (513)
Q Consensus       420 ~i~vwd~~~~  429 (513)
                      .+.+||+.-.
T Consensus       322 elQ~FD~ALs  331 (545)
T PF11768_consen  322 ELQCFDMALS  331 (545)
T ss_pred             eEEEEEeecC
Confidence            9999998865

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0019  Score=63.15  Aligned_cols=156  Identities=8%  Similarity=0.073  Sum_probs=91.2

Q ss_pred             CCEEEE-E-cCC----eEEEEEcCCCcc-----eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          244 GETFIS-A-DDL----RINLWNLEISNQ-----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       244 ~~~l~s-~-~d~----~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ..+|++ | +++    .+++|+++..+.     +.....+-+........++.+++.+.+- +.+|.|-.+|.|..+.-.
T Consensus        77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCc
Confidence            345555 4 333    699999975421     1100011111222346778899999987 899999999999988532


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-EEEEeCCeEEEEEccCCCCCe-eeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~~~~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~  390 (513)
                      -.+.  +..+.--          ......+|+.+.+..+++. +++++-..|.+|.+.. ..+. ..+..+...      
T Consensus       156 i~RD--rgsr~~~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~------  216 (933)
T KOG2114|consen  156 ILRD--RGSRQDY----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS------  216 (933)
T ss_pred             chhc--cccceee----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc------
Confidence            1111  0011111          1112368999999988876 4555557899999984 3332 334433332      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                               +.+..+++....+++++. ..+.+|+....
T Consensus       217 ---------lnCss~~~~t~qfIca~~-e~l~fY~sd~~  245 (933)
T KOG2114|consen  217 ---------LNCSSFSDGTYQFICAGS-EFLYFYDSDGR  245 (933)
T ss_pred             ---------ceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence                     236667765554555554 46999998743

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.04  E-value=0.00013  Score=71.30  Aligned_cols=180  Identities=16%  Similarity=0.152  Sum_probs=118.5

Q ss_pred             eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC
Q 010287          295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG  373 (513)
Q Consensus       295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~  373 (513)
                      ..++.|+....+..+|+++.+..    +......            +.+.-+  ..+++++.+|+. |+|.+-|.++ .+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~a------------~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s-~~  208 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKET----RTTNVSA------------SGVTIM--RYNNRNLFCGDTRGTVFLRDPNS-FE  208 (1118)
T ss_pred             cceeecchhhheeeeecccceee----eeeeccC------------CceEEE--EecCcEEEeecccceEEeecCCc-Cc
Confidence            56777888888999999886642    2211111            123333  347899999987 9999999997 89


Q ss_pred             CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---------CCcEEEEecCCCCccceeecCCCCcee
Q 010287          374 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------SNLFRVFGCSEGSAESTTLEASKNPMR  444 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~v~  444 (513)
                      .++++..|.+.                 -.+|+-.|+.|++++.         |..|+|||++.... +..+..+..| .
T Consensus       209 ~iht~~aHs~s-----------------iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~  269 (1118)
T KOG1275|consen  209 TIHTFDAHSGS-----------------ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-Q  269 (1118)
T ss_pred             eeeeeeccccc-----------------eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-h
Confidence            99999999976                 3467888999998875         45678999986532 2333333333 2


Q ss_pred             EEEEcCCC-CceeeecCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          445 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       445 ~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      -+.|.|.- ..++.++..|...+.+.............. ..+..|..+.+|+.++.||.+. ++.+-+|.
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            34455543 346677778888873322122111111111 2245599999999999999887 66677763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.04  E-value=1.9e-06  Score=80.26  Aligned_cols=166  Identities=14%  Similarity=0.168  Sum_probs=107.1

Q ss_pred             ccccCCeEEEEecc-CCCEEEEE-c----CCeEEEEEcCCCcce-eeecccCcccccc-ccCCeEEEEEeCCCCeEEEEE
Q 010287          229 HAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQS-FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYS  300 (513)
Q Consensus       229 ~~h~~~v~~~~~~~-~~~~l~s~-~----d~~i~vwd~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~  300 (513)
                      .+|....++++|++ |.+.|+.| +    |..+.|||+.+.-.. .+.     ..+.+ ......+++|..+. +++.+|
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG  172 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG  172 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence            45556688999998 67788887 2    788999999865211 110     01111 33445688999776 889999


Q ss_pred             eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeCCeEEEEE-ccCCCCCeeee
Q 010287          301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWD-INMDSGPVATF  378 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd-~~~~~~~~~~~  378 (513)
                      ...+.+.++|+|.......   .+..              ..+..+..+| .+.++++..+|.|.+|| .+.-..++..+
T Consensus       173 m~sr~~~ifdlRqs~~~~~---svnT--------------k~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i  235 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSVS---SVNT--------------KYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQII  235 (783)
T ss_pred             cccchhhhhhhhhhhhhhh---hhhh--------------hhcccceecCCCCCceeccccCceeeccchhhhccHHHHH
Confidence            9999999999985322111   1110              2467788889 88899988899999999 43323344443


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCCC-EEEEEe-CCCcEEEEecCC
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLFRVFGCSE  428 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~  428 (513)
                      ........           ..++.++|.|... .+++.+ +.+.|++|++..
T Consensus       236 ~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  236 LRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            33322111           1145899998543 444444 567899999864

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.02  E-value=0.0042  Score=53.67  Aligned_cols=174  Identities=15%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc--ccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP--ANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ..-.|++..++.++++. .++.+.++++.........-+.+.  ..+ ..+...+-.++|+|.+ +.|+.+-+..-..+|
T Consensus        66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLY  144 (248)
T ss_dssp             SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEE
T ss_pred             CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhE
Confidence            36678888888777777 599999998854332211110000  011 2345668999999987 555556677667777


Q ss_pred             EcCC--cccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          310 DMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       310 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      .++.  ...... .........      .......+.+++++|.. ++++..+. ..|..+|..  ++++..+.......
T Consensus       145 ~~~~~~~~~~~~-~~~~~~~~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~  215 (248)
T PF06977_consen  145 EVNGFPGGFDLF-VSDDQDLDD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFH  215 (248)
T ss_dssp             EEESTT-SS--E-EEE-HHHH-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGG
T ss_pred             EEccccCcccee-ecccccccc------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCccc
Confidence            7654  110000 000000000      01122457889999954 45555554 889899954  77777665544211


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      .-...+.+      --.++|.++|++.++ +.-+.+++|
T Consensus       216 gl~~~~~Q------pEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  216 GLSKDIPQ------PEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             G-SS---S------EEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             CcccccCC------ccEEEECCCCCEEEE-cCCceEEEe
Confidence            10001111      127999999965554 556666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.96  E-value=0.00023  Score=69.62  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=77.4

Q ss_pred             eccccCCeEEEEeccCCCEEEEE--c--------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEE
Q 010287          228 AHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML  297 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~--~--------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  297 (513)
                      +.+|.+.|.++.  -.|+.|+++  +        |.-|+|||++..+.+..        +.-+.+ ..-+.|+|.-...+
T Consensus       213 ~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~~~~~-P~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  213 FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQFPYG-PQFLRFHPSLTTRL  281 (1118)
T ss_pred             eeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCC--------cccccC-chhhhhcccccceE
Confidence            357777776544  457777774  2        34588999986654432        222222 25677888877889


Q ss_pred             EEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEc
Q 010287          298 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI  368 (513)
Q Consensus       298 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~  368 (513)
                      +.++..|...+-|..+-......+..+..            ....+..+++|+++..++.|+. |.|.+|.-
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNP------------NGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEcc------------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            99999999999984332111000111111            1145899999999999999986 99999983

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.94  E-value=0.0056  Score=52.88  Aligned_cols=128  Identities=10%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC--CcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          231 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ++..+-.++|++.++.|+.+ ......++.+..  ............ .........+.+++++|..+.+++.+..+..+
T Consensus       116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l  195 (248)
T PF06977_consen  116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL  195 (248)
T ss_dssp             -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred             CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence            44558899999988888877 566666666653  111111110000 00122344578999999877888888889999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEE
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW  366 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iw  366 (513)
                      ..+| ..|+..    ..+......   .-+.......-.|+|.++|.+.+++.-+..++|
T Consensus       196 ~~~d-~~G~~~----~~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  196 LELD-RQGRVV----SSLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEE--TT--EE----EEEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EEEC-CCCCEE----EEEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            9999 556542    111111100   000111135788999999977766543555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.93  E-value=0.0026  Score=55.77  Aligned_cols=143  Identities=11%  Similarity=0.107  Sum_probs=81.6

Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      ++|+|..||..+++...+.      .+..-.....+.....+  ..+++++.++.+..||..+|+...+    ++.....
T Consensus         1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~~~   68 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWR----FDLPGPI   68 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEE----EECSSCG
T ss_pred             CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEE----eeccccc
Confidence            3688999999888776653      12111122222233233  4566678999999999999986432    2221100


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeee-ecccccccccccccccCCccceeeEEEeCCC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                               ...    ....++..++...++.+..+|..+ ++.+... ........          .  ........++
T Consensus        69 ---------~~~----~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~  122 (238)
T PF13360_consen   69 ---------SGA----PVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG  122 (238)
T ss_dssp             ---------GSG----EEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred             ---------cce----eeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence                     011    122244444444458999999886 7776653 32211100          0  0022233337


Q ss_pred             CEEEEEeCCCcEEEEecCCCCc
Q 010287          410 GRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      ..++.+..++.|..+|+++++.
T Consensus       123 ~~~~~~~~~g~l~~~d~~tG~~  144 (238)
T PF13360_consen  123 DRLYVGTSSGKLVALDPKTGKL  144 (238)
T ss_dssp             TEEEEEETCSEEEEEETTTTEE
T ss_pred             CEEEEEeccCcEEEEecCCCcE
Confidence            7888888899999999999844

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.00043  Score=65.11  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             cCCeEEEEeccCCCEEEEE--c-C--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          232 DYHINSISNNSDGETFISA--D-D--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~--~-d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      ...+..-+|+|+++.++.-  . .  ..+.++++++++....+      .+.   ..-...+|+|||.+++++...||..
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~---g~~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFN---GNNGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccC---CccCCccCCCCCCEEEEEECCCCCc
Confidence            3446677899999887754  2 3  35999999977654321      222   3334678999997777777778865


Q ss_pred             E--EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccc
Q 010287          307 R--LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       307 ~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .  ++|+.++....  +....               +.-..=.|+|||+.|+-.+|  |.-.||-+..++.....+....
T Consensus       263 ~iy~~dl~~~~~~~--Lt~~~---------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~  325 (425)
T COG0823         263 DIYLMDLDGKNLPR--LTNGF---------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG  325 (425)
T ss_pred             cEEEEcCCCCccee--cccCC---------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence            4  55666554211  11111               11224568999999997665  5555555444355445554433


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCc--EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ....               .-.|+|||++|+..+. +|.  |.+.++.++... ..+ ..........+.++++.+...
T Consensus       326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~-~~l-t~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI-RIL-TSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCcE-EEc-cccccCCCCCcCCCCceEEEe
Confidence            3211               4579999999986663 344  666677665421 111 111122234556666655443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.0082  Score=56.92  Aligned_cols=217  Identities=12%  Similarity=0.089  Sum_probs=111.3

Q ss_pred             cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ......+.++|+++.++.+++|.-.++.....+.             ...+.-..+.|.+.+  .+|+-...+.|.++.-
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-------------k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-------------KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKN   96 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-------------EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEET
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-------------cccCceeEEEEecCc--cEEEEECCCeEEEEEc
Confidence            3447889999999999999999999998432221             113445678899954  5777777899999632


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      -....    .+.++.+             ..+..|-.   |.+|...+++.|.+||..+ ++.+..+....         
T Consensus        97 ~~~~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~---------  146 (443)
T PF04053_consen   97 FKNEV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA---------  146 (443)
T ss_dssp             TEE-T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E---------
T ss_pred             Ccccc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC---------
Confidence            22211    1112211             11333322   8888888777899999997 88888876543         


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC---------Cc-cceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                              |..+.|+++|++++..+.+ .+.+++....         -. ....+..-...|.+.+|..+  .++.....
T Consensus       147 --------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~  215 (443)
T PF04053_consen  147 --------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN  215 (443)
T ss_dssp             ---------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred             --------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence                    2379999999999988865 6777765422         00 12223222456667777655  33333223


Q ss_pred             CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                       .++...+++..      .......++.-+...|..+.|.... +.+++.+
T Consensus       216 -~lkYl~~Ge~~------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  216 -HLKYLVNGETG------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY  259 (443)
T ss_dssp             -EEEEEETTEEE------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred             -eEEEEEcCCcc------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence             33331111111      1111245677777777666665443 4455443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.00031  Score=68.24  Aligned_cols=105  Identities=15%  Similarity=0.242  Sum_probs=77.5

Q ss_pred             EEeccCCCEEEEE-----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          238 ISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       238 ~~~~~~~~~l~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ..|+|...+|+++     ..|.|.||- ++++....+      +.   .-.+++++|+|.. -+|+.|-.-|.+.+|...
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~---P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TY---PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------cc---ceehhhhccChHH-HHHhhccccceeEEEecC
Confidence            5689988888875     278888884 334432211      11   2335679999997 788888889999999876


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEcc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN  369 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~  369 (513)
                      +.+.     .+.           ...|..+|..+.|||+|..+++++. |.|.+|...
T Consensus        90 ~~e~-----htv-----------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTET-----HTV-----------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             Ccee-----eee-----------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5442     111           2346688999999999999999998 999999876

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.87  E-value=0.001  Score=64.12  Aligned_cols=109  Identities=9%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             ccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCC------------eeeeecccccccccccccccCCccceeeEEEe
Q 010287          341 ASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                      .....+.++|||+++++++.  .+|.|+|+.. .+.            +.....-..+                ...+|.
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFD  383 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFD  383 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEEC
Confidence            35688999999999998764  9999999986 221            1111111111                157899


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCC------C---ccceeecCCCCcee-----EEEEcCCCCceeeec---CCCeEEE
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEG------S---AESTTLEASKNPMR-----RQVQTPSRPSRPLGS---LSGVVRR  466 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~------~---~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~---~d~~i~~  466 (513)
                      ++|+...+-..|..|..|++...      .   .++..+..|-.+-.     .-.-.|+|+||++..   .|+.+-+
T Consensus       384 g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~v  460 (635)
T PRK02888        384 GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPV  460 (635)
T ss_pred             CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCC
Confidence            99988888889999999998862      1   23333444443332     223478999998863   3444443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00079  Score=63.40  Aligned_cols=186  Identities=14%  Similarity=0.115  Sum_probs=103.0

Q ss_pred             cCCeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          281 TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       281 ~~~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      ...+..-.|+|++..+....-..   ..+.++|+.++....  +..+.               +.-..-+|+|||+.|+-
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~f  254 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLAF  254 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEEE
Confidence            45567788999984433332222   358889988876421  11122               22344679999998886


Q ss_pred             Ee--C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCc--EEEEecCCCC
Q 010287          358 RD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEGS  430 (513)
Q Consensus       358 ~~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~--i~vwd~~~~~  430 (513)
                      ..  +  -.|+++|+..  +....+.......               +.-.|+|||++|+-.+ ..|.  |.+++++...
T Consensus       255 ~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~---------------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         255 SSSRDGSPDIYLMDLDG--KNLPRLTNGFGIN---------------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             EECCCCCccEEEEcCCC--CcceecccCCccc---------------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            43  2  4566667764  3333333222211               1467999999988555 4454  5566666554


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCC-CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ....+.......  .-.++|+|++++..+.. |...+.. ..+..... ...+........-.|.|+++.+...+
T Consensus       318 ~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~-~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         318 VTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDK-NDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             eeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEE-eccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence            433444433333  77899999999887643 4433300 11100000 11222334455667788887766443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.85  E-value=0.0041  Score=62.35  Aligned_cols=144  Identities=15%  Similarity=0.131  Sum_probs=88.3

Q ss_pred             eEEEEE-eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee------cCCEEEEEeCCeEEEEE
Q 010287          295 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD  367 (513)
Q Consensus       295 ~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp------~~~~l~~~~~~~v~iwd  367 (513)
                      ++|+.. .....+.-.|+..|+.    +..|+.+..           .+|..++-..      ..+.++.-++..+..||
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKV----V~eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD  558 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKV----VEEWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID  558 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcE----EEEeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence            444443 3457888899999887    555665542           2244433211      12334444558999999


Q ss_pred             ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEE
Q 010287          368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV  447 (513)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~  447 (513)
                      .+..+..+..-..+...         ..  ....+++-+.+| +||+|+.+|.||+||- .+..-...+.+-..||..+.
T Consensus       559 pR~~~~k~v~~~~k~Y~---------~~--~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD  625 (794)
T PF08553_consen  559 PRLSGNKLVDSQSKQYS---------SK--NNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID  625 (794)
T ss_pred             cCCCCCceeeccccccc---------cC--CCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence            98644222211122111         00  012356666555 7899999999999994 34344466778889999999


Q ss_pred             EcCCCCceeeecCCCeEEE
Q 010287          448 QTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++.||+|++.-+..-.+-+
T Consensus       626 vt~DGkwilaTc~tyLlLi  644 (794)
T PF08553_consen  626 VTADGKWILATCKTYLLLI  644 (794)
T ss_pred             ecCCCcEEEEeecceEEEE
Confidence            9999999876654444443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.84  E-value=0.0055  Score=55.63  Aligned_cols=105  Identities=10%  Similarity=0.049  Sum_probs=50.9

Q ss_pred             ccEEEEEEeec-CCEEEEEeC---Ce--EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          341 ASISDIKFARN-GRHILSRDY---MT--LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       341 ~~v~~i~~sp~-~~~l~~~~~---~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                      ..+..+.|||. ..+|.-|.+   ..  -+||-++..+.....+..+.....             +.-=-|.|||..|.-
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~-------------~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES-------------VGHEFWVPDGSTIWY  254 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE-------------EEEEEE-TTSS-EEE
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc-------------cccccccCCCCEEEE
Confidence            57888999994 445554543   23  378888776666555544332110             123358999987653


Q ss_pred             E-----eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          415 G-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       415 ~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      -     +.+..|.-+|+.++.... ..  ...+...+..++++++++--+.|
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEecCCC
Confidence            2     224456777888774332 11  11234467778899888765554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=3.3e-05  Score=75.07  Aligned_cols=145  Identities=18%  Similarity=0.212  Sum_probs=107.2

Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      .+..|....+|++|+.+. +.|+.|+..|.|++|++.+|.....                ...|.+.|+.+.-+.+|..+
T Consensus      1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s----------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEES----------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred             hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccccc----------------ccccccccccccccCCccee
Confidence            566788899999999998 9999999999999999999875221                35566889999988899988


Q ss_pred             EEEeC---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          356 LSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       356 ~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      ++.+.   --..+|++...+.+.+++....                   ++.|+.....-+.|+......+||+.++...
T Consensus      1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~-------------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDK-------------------AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             eeeccccCchHHHhccccccCccccccccc-------------------eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            87542   4678999987666666665433                   6778876555556665567899999998655


Q ss_pred             ceeecC---CCCceeEEEEcCCCCcee
Q 010287          433 STTLEA---SKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       433 ~~~~~~---~~~~v~~~~~~~~~~~l~  456 (513)
                      ...+.+   ....-+...|+|..+++.
T Consensus      1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHhcCcchhhhhhccccccCCCcceEe
Confidence            433432   233345678888877765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.77  E-value=0.018  Score=54.64  Aligned_cols=178  Identities=18%  Similarity=0.129  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      .|.+|+.. ++...++      .+.  .+.+.++.|+.+.  .|+.-..||.+++||+.. ..      .+........ 
T Consensus        62 ~I~iys~s-G~ll~~i------~w~--~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G-~~------~fsl~~~i~~-  122 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSI------PWD--SGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFG-EF------QFSLGEEIEE-  122 (410)
T ss_pred             EEEEECCC-CCEeEEE------EEC--CCCEEEEEECCCC--eEEEEEcCCEEEEEeCCC-ce------eechhhhccc-
Confidence            58888876 4433322      222  3789999999875  555677999999999863 22      1111000000 


Q ss_pred             cccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe--eeeeccccccccccc-ccccCCccceeeEEEeCCCC
Q 010287          334 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV--ATFQVHEHLRPKLCD-LYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~  410 (513)
                        ..-....+....+..+|-.+++++ +.+.+.  ....++.  +.+.  ..  ..... .........  ...++.+..
T Consensus       123 --~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v--~n~~~~~~~~~~~--~~--p~~~~~~~~~~~~~~--i~~l~~~~~  191 (410)
T PF04841_consen  123 --EKVLECRIFAIWFYKNGIVVLTGN-NRFYVV--NNIDEPVKLRRLP--EI--PGLWTKFHWWPSWTV--IPLLSSDRV  191 (410)
T ss_pred             --cCcccccccccccCCCCEEEECCC-CeEEEE--eCccccchhhccc--cC--CCccccccccccccc--ceEeecCcc
Confidence              000001122223333554444433 333332  2211111  1111  00  00000 000000000  123555666


Q ss_pred             EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ..+....++.+.+.+-.....    + ...+++..+++||+++++|.-..+|.+.+
T Consensus       192 ~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v  242 (410)
T PF04841_consen  192 VEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWV  242 (410)
T ss_pred             eEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence            555556666666444332211    1 12468999999999999999999999877

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.0098  Score=55.59  Aligned_cols=291  Identities=15%  Similarity=0.157  Sum_probs=130.1

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-Ccc-Cccccc--cccccCCC-cceEeccccC-C-CCcccccccc
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQR-RDLEMM--DYSMSRHP-EFRYKTEFQS-H-EPEFDYLKSL  109 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~-~~~~~~--~~~~~~~~-~~~~~~~~~~-h-~~~~~~~~~~  109 (513)
                      .|+.+.|+++..-||+|...|.|.||.+...+.-+ ... ..++..  .......+ .......... . +..|.++.-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999998889999999999999987654422 000 000000  00000000 0001110000 0 1123332222


Q ss_pred             cc-cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec-----cCC
Q 010287          110 EI-EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-----ANG  183 (513)
Q Consensus       110 ~~-~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g  183 (513)
                      +. .++|++++.+   |=.+++.|..+|.+.|.|++...++....+...-......       ...+.+.|.     .|+
T Consensus        83 ~~~~g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~-------~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   83 DAKQGPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS-------SYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-----------EEEEEEEEEE-TTSS
T ss_pred             eccCCcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc-------cCeeEEEEEEEecCCCc
Confidence            11 3889999984   3348999999999999999887766553333200000000       001112222     122


Q ss_pred             CccccccCCCCCCCCcCCCCCCceeceeecc-CCcccccceeeEeeccccCCeEEEE-eccC-C----------------
Q 010287          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTS-QETNLVAGCRRIYAHAHDYHINSIS-NNSD-G----------------  244 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~----------------  244 (513)
                      .         ..-..+.+...|.+.++.+.. ............. ..+.+.|..+. ++.+ |                
T Consensus       153 y---------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  153 Y---------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             S---------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             c---------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence            1         111225556667887777743 2221111111111 24555555554 3221 1                


Q ss_pred             ----CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-----CCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287          245 ----ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSKGSIRLIDMRQSA  315 (513)
Q Consensus       245 ----~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~  315 (513)
                          .+++.+.+..++++..-+.+...+.+        ........+.+-     ..+ ..|++-..+|.|++|.+..-+
T Consensus       223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             ----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--
T ss_pred             CCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCch
Confidence                24555678889999988766554422        111112223332     234 788889999999999998755


Q ss_pred             cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEc
Q 010287          316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  368 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~  368 (513)
                      .    +..+..+...        ....+....++++|..++-.+...+.++.+
T Consensus       294 e----i~~~~l~~~~--------d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  294 E----IKSVSLPPPL--------DSRRLSSSSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             E----EEEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             H----hhcccCCCcc--------ccccccccEECCCCCEEEEeCcccEEEEEE
Confidence            4    2222221100        112344566788999777655444444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.02  Score=53.61  Aligned_cols=211  Identities=10%  Similarity=0.051  Sum_probs=102.9

Q ss_pred             eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc-ccccccCCeEEEEEeC----CCC---eEEE
Q 010287          228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP----THC---NMLA  298 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~----~~~---~~l~  298 (513)
                      +....++|++++.+.-| +++.| .+|.+.|.|++.....+. ..+... .-......|+++.|..    ++.   -.++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            35557899999997544 78888 799999999985554433 111110 0112346788888862    111   3678


Q ss_pred             EEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE-Eeec---------------------CCEEE
Q 010287          299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL  356 (513)
Q Consensus       299 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~---------------------~~~l~  356 (513)
                      +|...|.+.+|.+.-... ......+....        ..+.++|..|. ++.+                     ..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSN-GRFSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             EEETTSEEEEEEEEE-GG-G-EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             EEeCCCCEEEEEEecCCC-CceEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            889999999998741100 00011111100        11223343333 2111                     23666


Q ss_pred             EEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE-----eCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          357 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       357 ~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      ++++..++++...+ .+...... .....              ...+++     ...+..|++-..+|.+++|.+..-+.
T Consensus       231 vvSe~~irv~~~~~-~k~~~K~~-~~~~~--------------~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  231 VVSESDIRVFKPPK-SKGAHKSF-DDPFL--------------CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             EE-SSEEEEE-TT----EEEEE--SS-EE--------------EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             EEcccceEEEeCCC-Ccccceee-ccccc--------------cceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            67778899998875 44433332 11110              113344     23556788888999999999987633


Q ss_pred             cceeecCC----CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          432 ESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       432 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + ..++..    ........++++|..++-.+......+
T Consensus       295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~  332 (395)
T PF08596_consen  295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF  332 (395)
T ss_dssp             E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred             h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence            3 333322    223446677888887766655444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.73  E-value=0.067  Score=53.88  Aligned_cols=227  Identities=11%  Similarity=0.083  Sum_probs=126.3

Q ss_pred             CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--------------cEEEE
Q 010287          244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--------------SIRLI  309 (513)
Q Consensus       244 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------~i~vw  309 (513)
                      ...++++..+.+.+..++.-+....      +++. -......+++.+.. ..+.+.+...              .++++
T Consensus       684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  684 PDSLASANGGALTIGTIDEIQKLHI------RTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             CceEEEecCCceEEEEecchhhcce------eeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence            4467777778888887764332211      1222 23445677777744 4454444322              24455


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEe----------C-CeEEEEEccCCCCCeee
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~----------~-~~v~iwd~~~~~~~~~~  377 (513)
                      |-.+-+.       +..++-..     .+....+.++.|..| +.++++|+          . |.|.+|.+.. ...++.
T Consensus       756 D~nTf~v-------l~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~  822 (1096)
T KOG1897|consen  756 DQNTFEV-------LSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL  822 (1096)
T ss_pred             cCCceeE-------Eeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence            5444222       11111100     111135666778776 67777652          1 6777777764 333333


Q ss_pred             eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      ...+.-  ...           +.++.. -+|++||  +-+..|++|+..+. +++..-..+..++..+.....+..++.
T Consensus       823 v~e~~v--~Ga-----------v~aL~~-fngkllA--~In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V  885 (1096)
T KOG1897|consen  823 VAETVV--KGA-----------VYALVE-FNGKLLA--GINQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV  885 (1096)
T ss_pred             eeeeee--ccc-----------eeehhh-hCCeEEE--ecCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence            322211  100           112211 1566665  44568999999876 444555678889999999999999999


Q ss_pred             ecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          458 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       458 ~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                      |..-+.+.+  ++..+-.  ......--+...++++.+-.+..++.+-..+.+++
T Consensus       886 gDlm~Sitll~y~~~eg~--f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~  938 (1096)
T KOG1897|consen  886 GDLMRSITLLQYKGDEGN--FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFT  938 (1096)
T ss_pred             eeccceEEEEEEeccCCc--eEEeehhhCccceeeEEEecCceEEeecccccEEE
Confidence            999999888  2222211  01111111456788888888888777666666654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00024  Score=67.64  Aligned_cols=109  Identities=13%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---cCC
Q 010287          403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---ANG  479 (513)
Q Consensus       403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~  479 (513)
                      -+++..+++++.|+.-|.+++|+...+........+....+..+.++++..++|.|+..|.|.+.+.......+   ...
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            46677889999999999999999887755556666666677788899999999999999999982222111111   111


Q ss_pred             ccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      .-..|...|++++|++++..+.+|.+.|.+++
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEE
Confidence            22237889999999999999999997777654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.042  Score=51.25  Aligned_cols=278  Identities=13%  Similarity=0.120  Sum_probs=122.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc-----cCcccccCceeccCCCccc
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF-----GSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~  187 (513)
                      ..+....|+|  +|+.++-. .++.|.+++..++...++..-.   ...+..|...     ........+.|||||+.+.
T Consensus        43 ~~~~~~~~sP--~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la  116 (353)
T PF00930_consen   43 PKLQDAKWSP--DGKYIAFV-RDNNLYLRDLATGQETQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA  116 (353)
T ss_dssp             TTBSEEEE-S--SSTEEEEE-ETTEEEEESSTTSEEEESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred             cccccceeec--CCCeeEEE-ecCceEEEECCCCCeEEecccc---ceeEEcCccceeccccccccccceEECCCCCEEE
Confidence            5688899976  66676665 4678999998877554443322   1111111110     0012234778899988752


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc--CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD--YHINSISNNSDGETFISADDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~  265 (513)
                      ....           .+..++.+.+..            +...+.  -.+..+.+-.-|...   ..-.+.++|+.+++.
T Consensus       117 ~~~~-----------d~~~v~~~~~~~------------~~~~~~~yp~~~~~~YPk~G~~n---p~v~l~v~~~~~~~~  170 (353)
T PF00930_consen  117 FLRF-----------DEREVPEYPLPD------------YSPPDSQYPEVESIRYPKAGDPN---PRVSLFVVDLASGKT  170 (353)
T ss_dssp             EEEE-----------E-TTS-EEEEEE------------ESSSTESS-EEEEEE--BTTS------EEEEEEEESSSTCC
T ss_pred             EEEE-----------CCcCCceEEeec------------cCCccccCCcccccccCCCCCcC---CceEEEEEECCCCcE
Confidence            2110           111111111100            000000  012222221111111   122466678875553


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEE--eCCC---cEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      . .+ +. +..+..-...+..+.|.+++ ..|+..  ..+.   .+.++|..++....    .......        +-.
T Consensus       171 ~-~~-~~-~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----~~~e~~~--------~Wv  234 (353)
T PF00930_consen  171 T-EL-DP-PNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRV----VLEETSD--------GWV  234 (353)
T ss_dssp             C-EE-----HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEE----EEEEESS--------SSS
T ss_pred             E-Ee-ee-ccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeE----EEEecCC--------cce
Confidence            2 11 00 00112335668899999998 533333  2222   45566776654311    1111110        000


Q ss_pred             ccEEEEEEe-ecCCEEE-EEe-C--CeEEEEEccCCCCCeeeeecccccccccccccccCCcccee-eEEEeCCCCEEE-
Q 010287          341 ASISDIKFA-RNGRHIL-SRD-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVA-  413 (513)
Q Consensus       341 ~~v~~i~~s-p~~~~l~-~~~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~-  413 (513)
                      ..-....+. +++..++ ... +  ..|.+++..  +.....+......               |. -+.++++++.|+ 
T Consensus       235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~---------------V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWE---------------VTSILGWDEDNNRIYF  297 (353)
T ss_dssp             SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS----------------EEEEEEEECTSSEEEE
T ss_pred             eeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceeccccCcee---------------ecccceEcCCCCEEEE
Confidence            112344444 6555444 333 2  455555554  4434444322222               22 367888887665 


Q ss_pred             EEeCC--C--cEEEEecC-CCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          414 TGSYS--N--LFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       414 ~~~~d--g--~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      ++..+  +  .|+.-++. .+  ....+.........+.++|++++++.
T Consensus       298 ~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  298 TANGDNPGERHLYRVSLDSGG--EPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EESSGGTTSBEEEEEETTETT--EEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             EecCCCCCceEEEEEEeCCCC--CeEeccCCCCCceEEEECCCCCEEEE
Confidence            45442  2  44444555 33  22334333333368999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.65  E-value=0.054  Score=50.60  Aligned_cols=48  Identities=15%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      +......+.+++.+|++++.++.+. |.|.++|+.. +..++.+++....
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA  351 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA  351 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence            3445567889999999998888766 9999999996 7777777776543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.62  E-value=0.0043  Score=62.21  Aligned_cols=102  Identities=21%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      .+.| +++.++.||.+.....+  +... ...........|++-..+|  .||.|+.+|.||+|| +.+..         
T Consensus       545 tflGls~n~lfriDpR~~~~k~--v~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~---------  609 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKL--VDSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKR---------  609 (794)
T ss_pred             eEEEECCCceEEeccCCCCCce--eecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchh---------
Confidence            3445 89999999998654211  1000 0111234567888888887  899999999999999 33321         


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  369 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~  369 (513)
                            .+..+.+...+|..|..+.||++|++.++..|-+++..
T Consensus       610 ------AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  610 ------AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ------hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence                  11224455579999999999999999888788888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0019  Score=57.38  Aligned_cols=88  Identities=17%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-  354 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-  354 (513)
                      -+..+...|.+++|+|....++..++.+..|+|.|+++.....    .+..+             ..+++++|.-|... 
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs----sy~a~-------------~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS----SYIAY-------------NQIWSCCWDLDERHV  250 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee----heecc-------------CCceeeeeccCCcce
Confidence            3466788899999999984489999999999999999876532    22222             47999999987654 


Q ss_pred             EEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287          355 ILSRDY-MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       355 l~~~~~-~~v~iwd~~~~~~~~~~~~~  380 (513)
                      |.+|.. |.|.|||++.+..++..+.+
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhh
Confidence            455555 99999999986666655544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.45  E-value=0.014  Score=42.59  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe---CCCCeEEEEEeCCCcEEE
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~dg~i~v  308 (513)
                      ..|.+++-... ..|+.+ .+|+|-+|+-.  .+.+++        + ....+.++.+.   .+|...|++|-.+|.|-+
T Consensus        43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   43 DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            34666766655 557777 89999999764  334332        1 12335666553   455457889988888753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.45  E-value=0.042  Score=46.34  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEc
Q 010287          290 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI  368 (513)
Q Consensus       290 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~  368 (513)
                      -++...+++.|+..+.+.--|..+|.+.++.+.-                 ..+.+-+.- -|.+++.|.. |.+++.+.
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~   80 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLCV   80 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence            3444478889999999999999998875432111                 122222222 4667888876 99999999


Q ss_pred             cCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE
Q 010287          369 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ  448 (513)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  448 (513)
                      ++ +.....+..-+....               .....+++..+..|+.|++++..|.++.... ...+-......+-+.
T Consensus        81 ~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV-ykskcgG~~f~sP~i  143 (354)
T KOG4649|consen   81 KT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFVSPVI  143 (354)
T ss_pred             cc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE-EecccCCceecccee
Confidence            97 766665554443211               4566789999999999999999999877444 333333333333444


Q ss_pred             cC
Q 010287          449 TP  450 (513)
Q Consensus       449 ~~  450 (513)
                      .|
T Consensus       144 ~~  145 (354)
T KOG4649|consen  144 AP  145 (354)
T ss_pred             cC
Confidence            44

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.43  E-value=0.0094  Score=56.51  Aligned_cols=180  Identities=10%  Similarity=0.123  Sum_probs=89.1

Q ss_pred             ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                      ....+..+.++|++ +.++. +.||.-.++.....+.     +                ..+.-....|.+++++.+.-.
T Consensus        31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~-----k----------------~~G~g~~~vw~~~n~yAv~~~   87 (443)
T PF04053_consen   31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRN-----K----------------AFGSGLSFVWSSRNRYAVLES   87 (443)
T ss_dssp             -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEE-----E----------------EEEE-SEEEE-TSSEEEEE-T
T ss_pred             CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCcc-----c----------------ccCceeEEEEecCccEEEEEC
Confidence            34557899999998 76666 6677777777322111     0                113456788998666544444


Q ss_pred             CCeEEEE-EccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC
Q 010287          360 YMTLKLW-DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA  438 (513)
Q Consensus       360 ~~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  438 (513)
                      ...|.|+ ++.  ......+......                ..+ |.  |..|...+.+ .|.+||..++ ..+..+..
T Consensus        88 ~~~I~I~kn~~--~~~~k~i~~~~~~----------------~~I-f~--G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v  144 (443)
T PF04053_consen   88 SSTIKIYKNFK--NEVVKSIKLPFSV----------------EKI-FG--GNLLGVKSSD-FICFYDWETG-KLIRRIDV  144 (443)
T ss_dssp             TS-EEEEETTE--E-TT-----SS-E----------------EEE-E---SSSEEEEETT-EEEEE-TTT---EEEEESS
T ss_pred             CCeEEEEEcCc--cccceEEcCCccc----------------ceE-Ec--CcEEEEECCC-CEEEEEhhHc-ceeeEEec
Confidence            5889996 333  2222233222111                011 22  7777777654 8999999987 44344443


Q ss_pred             CCCceeEEEEcCCCCceeeecCCCeEEEecCCC------CCccccCCc-cccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287          439 SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------NSALDANGN-AFDFSMKLLHLAWHPSENSIACAASNSLY  509 (513)
Q Consensus       439 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~------~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~  509 (513)
                        .+|..+.|++++.++|..+.+....+....+      ..+.+.... ..+...+|.+..|..|  .++-.+.+.+.
T Consensus       145 --~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lk  218 (443)
T PF04053_consen  145 --SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLK  218 (443)
T ss_dssp             ---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEE
T ss_pred             --CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEE
Confidence              3488999999999999998776666511111      000010111 1123678999999987  54444433443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.33  E-value=0.04  Score=49.25  Aligned_cols=212  Identities=11%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             eEEEeecCCCceEEEe--ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          117 KIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      .+++  +.++++++..  +---+|.|-|+..++.........                   +...-|.+..         
T Consensus        99 ~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~~~---------  148 (342)
T PF06433_consen   99 MFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSGNR---------  148 (342)
T ss_dssp             GEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEETT---------
T ss_pred             ceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecCCC---------
Confidence            3445  4466666664  445667888888877665444332                   1111122210         


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe-EEEEeccC-CCEEEEEcCCeEEEEEcCCCcceee-ecc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI-NSISNNSD-GETFISADDLRINLWNLEISNQSFN-IVD  271 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~-~~~l~s~~d~~i~vwd~~~~~~~~~-~~~  271 (513)
                        -..+-+.+|++.-..+....... .+....| ....+++ ..-++... +.++..+.+|.|+--|+........ .+.
T Consensus       149 --~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  149 --GFSMLCGDGSLLTVTLDADGKEA-QKSTKVF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             --EEEEEETTSCEEEEEETSTSSEE-EEEEEES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             --ceEEEecCCceEEEEECCCCCEe-Eeecccc-CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence              00344677777777665333222 1112222 2222322 23344443 4455566788888888875432211 110


Q ss_pred             cCc---cccccccCCeEEEEEeCCCCeEEEEEeC--C-------CcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287          272 VKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS--K-------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  339 (513)
Q Consensus       272 ~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (513)
                      +-.   ..-....+.-.-+++++....+++.--.  +       ..|-++|+.+++.    +..++..            
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l~------------  288 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPLE------------  288 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEEE------------
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeCC------------
Confidence            000   0001112223456777655243332211  1       1577888888776    3444432            


Q ss_pred             cccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeec
Q 010287          340 IASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       340 ~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~  380 (513)
                       .++.+|..+.+.+ +|++.+  ++.+.+||..+ ++.+.++..
T Consensus       289 -~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~  330 (342)
T PF06433_consen  289 -HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQ  330 (342)
T ss_dssp             -EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred             -CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence             3577999998765 555543  38999999997 888877753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.32  E-value=0.13  Score=47.13  Aligned_cols=175  Identities=13%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---C-cEEEEEcCCcccccccceeeccc
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---G-SIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g-~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ...|.-.|+.+++..         .+-.-...+..+.|+|..+.+|+.|-+.   . .-|+|-+++-...   .+.+..+
T Consensus       167 ~~~i~~idl~tG~~~---------~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~  234 (386)
T PF14583_consen  167 HCRIFTIDLKTGERK---------VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRR  234 (386)
T ss_dssp             -EEEEEEETTT--EE---------EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS--
T ss_pred             CceEEEEECCCCcee---------EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecC
Confidence            344556667655432         1222456788999999998888887652   2 1255655432211   1111111


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEE-Ee-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILS-RD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                      ..          ...+..=-|.|||..|.- +.     +..|.-+|+.+ ++.........                 ..
T Consensus       235 ~~----------~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~-----------------~~  286 (386)
T PF14583_consen  235 ME----------GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPW-----------------CS  286 (386)
T ss_dssp             -T----------TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EEEEEEE-S-----------------EE
T ss_pred             CC----------CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC-CCceEEEeCCc-----------------ee
Confidence            10          124555568889887764 21     13455566664 32222111111                 01


Q ss_pred             eEEEeCCCCEEEEEeCCC----------------cEEEEecCCCCccc--------eeecCCCC-ceeEEEEcCCCCcee
Q 010287          402 ECCLSGDGGRVATGSYSN----------------LFRVFGCSEGSAES--------TTLEASKN-PMRRQVQTPSRPSRP  456 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~dg----------------~i~vwd~~~~~~~~--------~~~~~~~~-~v~~~~~~~~~~~l~  456 (513)
                      -...++||++++-=+.|.                -|++++++.+....        ..+.++.. .=....|+||+++++
T Consensus       287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~Vl  366 (386)
T PF14583_consen  287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVL  366 (386)
T ss_dssp             EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEE
T ss_pred             eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEE
Confidence            455678888876433332                46677877553211        01122221 124678999999987


Q ss_pred             eec-CCCeEEE
Q 010287          457 LGS-LSGVVRR  466 (513)
Q Consensus       457 ~~~-~d~~i~~  466 (513)
                      ..| ..|...|
T Consensus       367 F~Sd~~G~~~v  377 (386)
T PF14583_consen  367 FRSDMEGPPAV  377 (386)
T ss_dssp             EEE-TTSS-EE
T ss_pred             EECCCCCCccE
Confidence            654 4454444

>smart00320 WD40 WD40 repeats

Probab=97.32  E-value=0.00037  Score=40.26  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFE   63 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~   63 (513)
                      ..|...|++++|++++.++++++.|+.+++|+
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.30  E-value=0.17  Score=48.13  Aligned_cols=193  Identities=12%  Similarity=0.053  Sum_probs=91.8

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +.+.++.|+.+.++++...||.++++|+. ++..+.+- .......-....+....+..+|   ++.-..++.+.+..--
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~-~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLG-EEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cceeechh-hhccccCcccccccccccCCCC---EEEECCCCeEEEEeCc
Confidence            67999999998888877799999999987 33211110 0000011112223333444455   3333345554443221


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      .....   .+.+.  +.+........+.....-..++.+....+... ++.+.+.+-.. .+.   +....         
T Consensus       156 ~~~~~---~~~~~--~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~~---------  217 (410)
T PF04841_consen  156 DEPVK---LRRLP--EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSDG---------  217 (410)
T ss_pred             cccch---hhccc--cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCCC---------
Confidence            11100   01110  00000000000001000123444444444433 35555444321 111   11111         


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCcee
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~  456 (513)
                             ++..+++||++++||.-..+|.+.+....-.+ ....+... ..+...+.|.-+...++
T Consensus       218 -------~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~dav~l  275 (410)
T PF04841_consen  218 -------PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDAVVL  275 (410)
T ss_pred             -------CeEEEEECCCCCEEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCCcEEE
Confidence                   14589999999999999999999988755432 22333322 34556788876644333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.061  Score=46.12  Aligned_cols=201  Identities=17%  Similarity=0.154  Sum_probs=111.0

Q ss_pred             eEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe---
Q 010287          284 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---  359 (513)
Q Consensus       284 i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---  359 (513)
                      -..++++|..+.-++.+-.-|+ ..++|....+...    ++...+.    ..+.+|      =.|||||++|.+..   
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s~~~----RHfyGH------Gvfs~dG~~LYATEndf  135 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVSQEG----RHFYGH------GVFSPDGRLLYATENDF  135 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEecccC----ceeecc------cccCCCCcEEEeecCCC
Confidence            3457777776666666666664 4578887765422    2211110    012233      35899999999731   


Q ss_pred             C---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------------------
Q 010287          360 Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------------------  418 (513)
Q Consensus       360 ~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------  418 (513)
                      +   |.|-|||.+..-..+-++..|.-..               ..+.|.+||+.|+.+...                  
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe  200 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME  200 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence            2   8999999985445555565554321               268899999998866431                  


Q ss_pred             CcEEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeE-----EE---ecCCCCCccccCCc-cccccC
Q 010287          419 NLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVV-----RR---VKGADNSALDANGN-AFDFSM  486 (513)
Q Consensus       419 g~i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i-----~~---~~~~~~~~~~~~~~-~~~~~~  486 (513)
                      -++.+.|..++..+. .++.  .+...++.+...+++..+.-+-..|.-     -+   .++..+........ ...+..
T Consensus       201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an  280 (366)
T COG3490         201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN  280 (366)
T ss_pred             ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence            122333433442221 2333  345567778888777766554332221     01   22222221111111 112445


Q ss_pred             CeeEEEEeCCCCEEEEEc--CCcEEEEeC
Q 010287          487 KLLHLAWHPSENSIACAA--SNSLYMYYA  513 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~--~~~~~i~~~  513 (513)
                      -|-+++-+-+..+++..+  .|..++|.+
T Consensus       281 YigsiA~n~~~glV~lTSP~GN~~vi~da  309 (366)
T COG3490         281 YIGSIAANRRDGLVALTSPRGNRAVIWDA  309 (366)
T ss_pred             hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence            677888887777777555  667777764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.13  Score=48.49  Aligned_cols=189  Identities=13%  Similarity=0.144  Sum_probs=118.2

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID  310 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd  310 (513)
                      ...+++++.+..+...  +++.|.+.|..+.......         .-......++++|++..+.++-.  .++.+.+.|
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            4567888888865554  5899999997655433221         11225678999999845555544  368899999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCCee-----eeecccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHEH  383 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~~~-----~~~~~~~  383 (513)
                      ..++....    ......            .+ ..++++|+|..++...  ++.|.+.|... ....+     .......
T Consensus       147 ~~t~~~~~----~~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~  208 (381)
T COG3391         147 AATNKVTA----TIPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTG  208 (381)
T ss_pred             CCCCeEEE----EEecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCC
Confidence            88776532    111110            23 7799999999888765  49999999764 32222     0111111


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec-
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-  459 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  459 (513)
                      +                ..+.++|+|.++......   +.+...|..++................+...|+++.+.+.. 
T Consensus       209 P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         209 P----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             C----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence            1                268999999976655433   58888888876332221222111345688999999887763 


Q ss_pred             CCCeEEE
Q 010287          460 LSGVVRR  466 (513)
Q Consensus       460 ~d~~i~~  466 (513)
                      ..+.+.+
T Consensus       273 ~~~~V~v  279 (381)
T COG3391         273 QGGTVSV  279 (381)
T ss_pred             CCCeEEE
Confidence            3466666

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.26  E-value=0.15  Score=46.94  Aligned_cols=175  Identities=10%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCC-c--ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc-cccccceeecccc
Q 010287          253 LRINLWNLEIS-N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE  328 (513)
Q Consensus       253 ~~i~vwd~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~  328 (513)
                      |.|.++++... .  ..++++     .-....++|++++-- .+ .+++  +..+.|.+|++...+ ...  ...++.+ 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~lv~--~~g~~l~v~~l~~~~~l~~--~~~~~~~-  129 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-RLVV--AVGNKLYVYDLDNSKTLLK--KAFYDSP-  129 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-EEEE--EETTEEEEEEEETTSSEEE--EEEE-BS-
T ss_pred             cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-EEEE--eecCEEEEEEccCcccchh--hheecce-
Confidence            88999999863 1  122221     123347889998877 33 4333  345899999998766 211  1111111 


Q ss_pred             CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                                  ..+.++..  .+.+++.|+- ..+.++..+.....+..+......             ..++++.|-+
T Consensus       130 ------------~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~  182 (321)
T PF03178_consen  130 ------------FYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLV  182 (321)
T ss_dssp             ------------SSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-
T ss_pred             ------------EEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEec
Confidence                        23555544  4669999886 888888666423333333322211             1256888886


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC------C--ccceeecCC-CCceeEE---EEcCC--CC------ceeeecCCCeEEE
Q 010287          408 DGGRVATGSYSNLFRVFGCSEG------S--AESTTLEAS-KNPMRRQ---VQTPS--RP------SRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~------~--~~~~~~~~~-~~~v~~~---~~~~~--~~------~l~~~~~d~~i~~  466 (513)
                      +++.++.+..+|.+.++.....      .  .+......| ...+.++   .+.|.  +.      .++.++.+|.|-.
T Consensus       183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            7678999999999999987631      1  111122222 3456666   43441  21      3777788888874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.24  E-value=0.16  Score=46.70  Aligned_cols=188  Identities=11%  Similarity=0.084  Sum_probs=99.0

Q ss_pred             eEEEEEeC----------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEE
Q 010287          295 NMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK  364 (513)
Q Consensus       295 ~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~  364 (513)
                      .+|+.|+.          .|.|.++++.........++....          ....++|++++--  +..|+++..+.|.
T Consensus        43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~----------~~~~g~V~ai~~~--~~~lv~~~g~~l~  110 (321)
T PF03178_consen   43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS----------TEVKGPVTAICSF--NGRLVVAVGNKLY  110 (321)
T ss_dssp             EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE----------EEESS-EEEEEEE--TTEEEEEETTEEE
T ss_pred             CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE----------EeecCcceEhhhh--CCEEEEeecCEEE
Confidence            67776654          288999999874100001111111          1223678888765  4447777778999


Q ss_pred             EEEccCCCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec--CCCC
Q 010287          365 LWDINMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKN  441 (513)
Q Consensus       365 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~  441 (513)
                      +|++.. .+ ....-..+...                ...+....+++++.|..-..+.++...........+.  ....
T Consensus       111 v~~l~~-~~~l~~~~~~~~~~----------------~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~  173 (321)
T PF03178_consen  111 VYDLDN-SKTLLKKAFYDSPF----------------YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR  173 (321)
T ss_dssp             EEEEET-TSSEEEEEEE-BSS----------------SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred             EEEccC-cccchhhheecceE----------------EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence            999996 44 22222221211                1334444466999999888888886654323222332  2344


Q ss_pred             ceeEEEEcCCCCceeeecCCCeEEEecCCC--CC---cc-cc-CCccccccCCeeEE---EEeCC--CC-------EEEE
Q 010287          442 PMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NS---AL-DA-NGNAFDFSMKLLHL---AWHPS--EN-------SIAC  502 (513)
Q Consensus       442 ~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~~---~~-~~-~~~~~~~~~~i~~~---~~sp~--~~-------~la~  502 (513)
                      .+.++.+-+++..++.+..+|.+.+.+-..  ..   +. .+ ....+.....|+++   +..|.  +.       .+..
T Consensus       174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~  253 (321)
T PF03178_consen  174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG  253 (321)
T ss_dssp             EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred             cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE
Confidence            577777776667899999999998821111  11   00 01 11222346778888   66662  22       4445


Q ss_pred             EcCCcEEEE
Q 010287          503 AASNSLYMY  511 (513)
Q Consensus       503 ~~~~~~~i~  511 (513)
                      +.++++...
T Consensus       254 T~~G~Ig~l  262 (321)
T PF03178_consen  254 TVDGSIGVL  262 (321)
T ss_dssp             ETTS-EEEE
T ss_pred             ecCCEEEEE
Confidence            557777643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.002  Score=60.87  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ..+.-+.|+|.-..||.+ .+|.|.+..++ .++.+        .+.-+...++ +++|.||| ++++.|-.||+|++.|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw--------tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW--------TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeE--------eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence            347778999999999999 79999999988 44444        3343555566 99999998 9999999999999999


Q ss_pred             cCCccccc
Q 010287          311 MRQSALCD  318 (513)
Q Consensus       311 ~~~~~~~~  318 (513)
                      +.++....
T Consensus        91 ve~~~~l~   98 (665)
T KOG4640|consen   91 VEKGGRLV   98 (665)
T ss_pred             ccCCCcee
Confidence            99887643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.18  E-value=0.27  Score=48.16  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      .+..|+.++.||.|+.+|.++++.+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCcee
Confidence            5568888899999999999998433

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0016  Score=39.37  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEe
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER   64 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~   64 (513)
                      -...|++++|+|..++||.|+.+|.|.|+.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            3567999999999999999999999999998

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.03  E-value=0.059  Score=52.43  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=44.3

Q ss_pred             eEEEeCCCCEEEEEe-CCCcEEEEecCCCCc-----------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          402 ECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .+.++|||+++++++ .++.+.|.|+.+.+.           +....+.-..| ...+|.++|....+-..|..|-.
T Consensus       325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEE
Confidence            789999999988655 689999999987532           11222222233 36678888887777777766655

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.01  E-value=0.23  Score=44.47  Aligned_cols=230  Identities=13%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287          242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  320 (513)
Q Consensus       242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  320 (513)
                      ..++.|+.| ++| +.+++........++         .+...|..+...|+- +.+++- .|+.+.++++..-......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---------LKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE---------eecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence            356778888 677 999998333333222         123349999999986 555444 3599999998775432210


Q ss_pred             ceeeccccCCCCccccccccccEEEEE---EeecCCEEEEEeCCeEEEEEccCC---C-CCeeeeecccccccccccccc
Q 010287          321 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMD---S-GPVATFQVHEHLRPKLCDLYE  393 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~---~sp~~~~l~~~~~~~v~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      . ......... ..........+..++   -......|+.+....|.+|.....   . +..+.+.....          
T Consensus        73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~----------  140 (275)
T PF00780_consen   73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP----------  140 (275)
T ss_pred             c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence            0 000000000 000000112344444   122445666676789999988742   1 34444444433          


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-eeecC----------CCCceeEEEEcCCCCceeeecCCC
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEA----------SKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                            +..++|.  ++.++.|..++ ..+.|+.++.... .....          ...++..+. -+++.+|++- .+-
T Consensus       141 ------~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~~  209 (275)
T PF00780_consen  141 ------PSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DNI  209 (275)
T ss_pred             ------cEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cce
Confidence                  2378888  55777777554 7888998663321 11111          112332223 3345566543 344


Q ss_pred             eEEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          463 VVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       463 ~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      .+.+ ..|....     ...+.-+..+.++++.  ..+|..-.++++-||+.
T Consensus       210 g~fv~~~G~~~r-----~~~i~W~~~p~~~~~~--~pyli~~~~~~iEV~~~  254 (275)
T PF00780_consen  210 GVFVNKNGEPSR-----KSTIQWSSAPQSVAYS--SPYLIAFSSNSIEVRSL  254 (275)
T ss_pred             EEEEcCCCCcCc-----ccEEEcCCchhEEEEE--CCEEEEECCCEEEEEEC
Confidence            4455 2222111     1122235677777774  46888888888988863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.97  E-value=0.17  Score=45.33  Aligned_cols=280  Identities=9%  Similarity=0.020  Sum_probs=134.5

Q ss_pred             CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccC
Q 010287          136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQ  215 (513)
Q Consensus       136 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  215 (513)
                      +.+.+.|..+++.+-.......+                 .+..+|+|+.+....-...  =...+....-|.+||..+.
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~-----------------~~~~spdgk~~y~a~T~~s--R~~rG~RtDvv~~~D~~TL   77 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG-----------------NVALSPDGKTIYVAETFYS--RGTRGERTDVVEIWDTQTL   77 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE-----------------EEEE-TTSSEEEEEEEEEE--ETTEEEEEEEEEEEETTTT
T ss_pred             ceEEEEECCCCcEEEEeecccCC-----------------ceeECCCCCEEEEEEEEEe--ccccccceeEEEEEecCcC
Confidence            36888888887766544433221                 4567888886622100000  0001123446788887665


Q ss_pred             Ccccccceee--EeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe
Q 010287          216 ETNLVAGCRR--IYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH  290 (513)
Q Consensus       216 ~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  290 (513)
                      ....+.....  .....  .....++++.++++++..   -...|.|-|+...+-..++      ..      .-|...-
T Consensus        78 ~~~~EI~iP~k~R~~~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei------~~------PGC~~iy  143 (342)
T PF06433_consen   78 SPTGEIEIPPKPRAQVV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI------DT------PGCWLIY  143 (342)
T ss_dssp             EEEEEEEETTS-B--BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE------EG------TSEEEEE
T ss_pred             cccceEecCCcchheec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee------cC------CCEEEEE
Confidence            4322111110  00000  112335677788777765   2667777787754432221      11      1133334


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEeCCeEEEEEc
Q 010287          291 PTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDYMTLKLWDI  368 (513)
Q Consensus       291 ~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~~~v~iwd~  368 (513)
                      |.++.-|.+.|.||.+.-..+. .|+...+....|....+           ..+..-.++.. +++++..-.|.|+--|+
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d-----------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD-----------PLFEHPAYSRDGGRLYFVSYEGNVYSADL  212 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS------------B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc-----------ccccccceECCCCeEEEEecCCEEEEEec
Confidence            5444568899999999988887 44443222223332221           12222334443 34555544588888777


Q ss_pred             cCCCCCeeeeecccccc-cccccccccCCccceeeEEEeCCCCEEEEEeC---C-------CcEEEEecCCCCccceeec
Q 010287          369 NMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSY---S-------NLFRVFGCSEGSAESTTLE  437 (513)
Q Consensus       369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-------g~i~vwd~~~~~~~~~~~~  437 (513)
                      ..  ........-+-.. .....-......   .-+++++..+.|++.-.   +       ..|.++|+.+++. +..+.
T Consensus       213 sg--~~~~~~~~~~~~t~~e~~~~WrPGG~---Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~  286 (342)
T PF06433_consen  213 SG--DSAKFGKPWSLLTDAEKADGWRPGGW---QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIP  286 (342)
T ss_dssp             TT--SSEEEEEEEESS-HHHHHTTEEE-SS---S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEE
T ss_pred             cC--CcccccCcccccCccccccCcCCcce---eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEe
Confidence            63  2221111100000 000000000111   15788876665554221   1       2478889988743 33333


Q ss_pred             CCCCceeEEEEcCCCC-ceee-ecCCCeEEE
Q 010287          438 ASKNPMRRQVQTPSRP-SRPL-GSLSGVVRR  466 (513)
Q Consensus       438 ~~~~~v~~~~~~~~~~-~l~~-~~~d~~i~~  466 (513)
                      . ..++.++.++.+.+ +|.. ...++.+.+
T Consensus       287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDV  316 (342)
T ss_dssp             E-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred             C-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence            2 23566888888876 4433 345788888

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0036  Score=59.19  Aligned_cols=88  Identities=13%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee-EEEEcCCCCceeeecCCCeEEEe---cCCCCCccc
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRRV---KGADNSALD  476 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~---~~~~~~~~~  476 (513)
                      ..+.|+|.-..+|++..+|.|.+..+. . +++-++..+..+++ +++|.|||++||.|-.||.|++.   ++..+..  
T Consensus        24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~--   99 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS--   99 (665)
T ss_pred             EEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec--
Confidence            378999999999999999999999888 3 55577777777777 99999999999999999999992   2222221  


Q ss_pred             cCCccccccCCeeEEEEeC
Q 010287          477 ANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       477 ~~~~~~~~~~~i~~~~~sp  495 (513)
                         ..+....+|..+-|+|
T Consensus       100 ---~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 ---FLFSVETDISKGIWDR  115 (665)
T ss_pred             ---cccccccchheeeccc
Confidence               1223367888888874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.052  Score=50.70  Aligned_cols=140  Identities=10%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--------CEEEEEeCCeEEEE
Q 010287          295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--------RHILSRDYMTLKLW  366 (513)
Q Consensus       295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~l~~~~~~~v~iw  366 (513)
                      -++.++.....++-.|+..|+.    +..|+.+.             .|.-+.+.|+.        +.|+.-++..|.-|
T Consensus       347 lil~~~~~~~~l~klDIE~GKI----VeEWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKI----VEEWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             eEeeCCCCcCcceeeeccccee----eeEeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEe
Confidence            3455666677788888888887    44455443             25555666643        23444456889999


Q ss_pred             EccCCCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287          367 DINMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR  445 (513)
Q Consensus       367 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  445 (513)
                      |.+-.+. .+...++|+....           +...+.+-. ...++++||.+|.|++||. .+......+.+-..+|..
T Consensus       410 DpRv~~~~kl~~~q~kqy~~k-----------~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYSTK-----------NNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             cccccCcceeeeeeccccccc-----------cccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence            9886444 2333333332211           001133333 3448999999999999997 454445778889999999


Q ss_pred             EEEcCCCCceeeecCCCeE
Q 010287          446 QVQTPSRPSRPLGSLSGVV  464 (513)
Q Consensus       446 ~~~~~~~~~l~~~~~d~~i  464 (513)
                      +..+.+|++++.-...-.+
T Consensus       477 VdvtadGKwil~Tc~tyLl  495 (644)
T KOG2395|consen  477 VDVTADGKWILATCKTYLL  495 (644)
T ss_pred             EEeeccCcEEEEecccEEE
Confidence            9999999998765544333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.78  E-value=0.15  Score=43.93  Aligned_cols=195  Identities=14%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             EeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----------
Q 010287          239 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----------  302 (513)
Q Consensus       239 ~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------  302 (513)
                      .|+|||.+|... +     .|.|-+||.+..-+..       ..+..|.-....+.+.+|| ..++.+..          
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR  191 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGR  191 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeCCceecccccCc
Confidence            389999999975 2     4789999998433222       2566777778899999999 66655422          


Q ss_pred             --------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeE----EEEEcc
Q 010287          303 --------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL----KLWDIN  369 (513)
Q Consensus       303 --------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v----~iwd~~  369 (513)
                              .-.+.+.|..++.++.+....            -..+.-++..++..+||..++.+.. |.-    -+--..
T Consensus       192 ~~lNldsMePSlvlld~atG~liekh~Lp------------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~  259 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEKHTLP------------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF  259 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhhccCc------------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec
Confidence                    112233343444432221110            0123356888999999998887643 210    011111


Q ss_pred             CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEE
Q 010287          370 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ  448 (513)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  448 (513)
                      ..+++++.+...+.....+..        -|-+++.+.+..+++..+ ..+...+||..++.....   ..-..  +.-+
T Consensus       260 ~~g~~l~~~~~pee~~~~~an--------YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~---a~l~d--aaGv  326 (366)
T COG3490         260 RKGEPLEFLDLPEEQTAAFAN--------YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE---AALPD--AAGV  326 (366)
T ss_pred             cCCCcCcccCCCHHHHHHHHh--------hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec---ccccc--cccc
Confidence            124555544433322111110        022677776555655444 566788999999833211   00000  1112


Q ss_pred             cCCCCceeeecCCCeEEE
Q 010287          449 TPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       449 ~~~~~~l~~~~~d~~i~~  466 (513)
                      -+.+.-++..+.+|.+++
T Consensus       327 a~~~~gf~vssg~G~~~~  344 (366)
T COG3490         327 AAAKGGFAVSSGQGRIIF  344 (366)
T ss_pred             eeccCceEEecCCceEEe
Confidence            233444555556777776

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.77  E-value=0.46  Score=44.13  Aligned_cols=119  Identities=13%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeCCCcEEEEEc-CCcccccccceeecccc
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQE  328 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~  328 (513)
                      ..++.+||+.+.+ ..+.++     +......+..+.|.  |+...-|+.+.....|..|-- ..+.-..+.+..+....
T Consensus       221 G~~l~vWD~~~r~-~~Q~id-----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  221 GHSLHVWDWSTRK-LLQTID-----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             --EEEEEETTTTE-EEEEEE-----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             cCeEEEEECCCCc-EeeEEe-----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence            5789999998654 343332     22222335566664  444344555555666655543 33332222122221111


Q ss_pred             C-----CCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCee
Q 010287          329 A-----PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVA  376 (513)
Q Consensus       329 ~-----~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~  376 (513)
                      .     +.-...+..-..-|+.|.+|.|.++|..+.-  |.|+.||+..+..+..
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence            0     0000011122356899999999999999874  9999999986555543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>smart00320 WD40 WD40 repeats

Probab=96.75  E-value=0.0025  Score=36.52  Aligned_cols=34  Identities=35%  Similarity=0.536  Sum_probs=29.8

Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      .+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus         7 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            345678889999999988 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.67  E-value=0.13  Score=37.56  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             eEEEEE---eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287          284 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY  360 (513)
Q Consensus       284 i~~~~~---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~  360 (513)
                      |+++++   ..++.+.|+.|+.|..|++|+-..  .    +..+...             ..|.++.-...+++.++-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N   62 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I----VAEITET-------------DKVTSLCSLGGGRFAYALAN   62 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence            344444   456668899999999999998432  2    2222222             46777777766554444344


Q ss_pred             CeEEEEEcc
Q 010287          361 MTLKLWDIN  369 (513)
Q Consensus       361 ~~v~iwd~~  369 (513)
                      |+|-+|+-.
T Consensus        63 GTVGvY~~~   71 (111)
T PF14783_consen   63 GTVGVYDRS   71 (111)
T ss_pred             CEEEEEeCc
Confidence            899888753

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.068  Score=49.96  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=68.1

Q ss_pred             EEEEcCCeEEEEEcCCCcc-eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          247 FISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       247 l~s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      |+.-++..|+-||.+-... .+...+.+  .+ .......|++-..+|  +|+.|+.+|.|++||- .+...        
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A--------  463 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA--------  463 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence            4333899999999985543 11111110  11 113445677766666  8999999999999995 44321        


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  369 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~  369 (513)
                             +..+.+...+|..|..+.+|++|++..+..+-+-++.
T Consensus       464 -------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  464 -------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             -------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                   1124455578999999999999998877777777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.66  E-value=0.0051  Score=37.18  Aligned_cols=30  Identities=20%  Similarity=0.671  Sum_probs=26.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEcc
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ  144 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~  144 (513)
                      ..|..++|||..|  +++.++.||.|.++.+.
T Consensus        12 ~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMD--LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence            6799999988544  99999999999999983

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.52  E-value=0.077  Score=52.62  Aligned_cols=139  Identities=12%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             ccEEEEEEeecCCEEEEEe-------C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          341 ASISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~-------~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      ..+.+.+++|+|+.++...       +  ..|.+++..  +.......+..                 .+.-.|+|||+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~  410 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADA  410 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCc
Confidence            3578899999999887632       3  456666643  33322222221                 126789999887


Q ss_pred             EEEEeCC------------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---e--cCCCCCc
Q 010287          412 VATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---V--KGADNSA  474 (513)
Q Consensus       412 l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~--~~~~~~~  474 (513)
                      |++....            +.+.+.++..+... .   .....|..+.|+|||..+|... ++.|.+   .  .++. ..
T Consensus       411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~  484 (591)
T PRK13616        411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YA  484 (591)
T ss_pred             eEEEecCcceEEEeccCCCceEEEEeccCchhh-h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-ee
Confidence            7766532            23333344332111 1   2245699999999999888765 577777   1  1221 10


Q ss_pred             cccCCcc-ccccCCeeEEEEeCCCCEEEEEc
Q 010287          475 LDANGNA-FDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       475 ~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ....... ......+.++.|.+++.+++...
T Consensus       485 l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~  515 (591)
T PRK13616        485 LTNPREVGPGLGDTAVSLDWRTGDSLVVGRS  515 (591)
T ss_pred             ecccEEeecccCCccccceEecCCEEEEEec
Confidence            0000001 12234468899999999665433

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.51  E-value=0.36  Score=48.08  Aligned_cols=202  Identities=13%  Similarity=0.138  Sum_probs=102.1

Q ss_pred             CCeEEEEeccCCCEEEEEc-------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-C
Q 010287          233 YHINSISNNSDGETFISAD-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G  304 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g  304 (513)
                      ..+...+++|+|+.++...       |..-.+|-...+.....+       ..  ....+...|+|++ ..+.+.... .
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~--g~~~t~PsWspDG-~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE--GHSLTRPSWSLDA-DAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec--CCCCCCceECCCC-CceEEEecCcc
Confidence            3577889999999887642       333344433222222111       11  2237789999997 666555432 2


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccC--CCCCeeeeeccc
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVHE  382 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~--~~~~~~~~~~~~  382 (513)
                      .+++.+......    +......... ..   ....+.|..+.|||||..++.-.++.|.+--+..  .+.  ..+....
T Consensus       420 ~~~v~~~~~~gq----l~~~~vd~ge-~~---~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~  489 (591)
T PRK13616        420 VVRVIRDPATGQ----LARTPVDASA-VA---SRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPR  489 (591)
T ss_pred             eEEEeccCCCce----EEEEeccCch-hh---hccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccE
Confidence            233332211100    1111110000 00   0123579999999999998876667777633221  132  2221100


Q ss_pred             ccccccccccccCCccc-eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeec
Q 010287          383 HLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~  459 (513)
                      ....         .+.+ +.++.|.+++.++ ++..++.-.+|.+.-.......+..  ...++..++-+++  -+....
T Consensus       490 ~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~  557 (591)
T PRK13616        490 EVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD  557 (591)
T ss_pred             Eeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence            0000         0001 2378999999855 5555554555655433333222222  2566777777763  355556


Q ss_pred             CCCeEEE
Q 010287          460 LSGVVRR  466 (513)
Q Consensus       460 ~d~~i~~  466 (513)
                      .++.+.+
T Consensus       558 ~~g~~~l  564 (591)
T PRK13616        558 ARAVLQL  564 (591)
T ss_pred             CCceEEe
Confidence            7777777

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.51  E-value=0.58  Score=41.95  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecc-cCcc-----ccccccCCeEEEE--EeCCCCeEEEEEeCCCcE
Q 010287          235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVD-VKPA-----NMEDLTEVITSAE--FHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~-~~~~-----~~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~i  306 (513)
                      |..+...++-+.+++-.|+.+.++++..-........ ..+.     ........+..++  -...+ ...+.......|
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEE
Confidence            8888888888888877779999999875443321000 0000     0011122344444  12333 344445556699


Q ss_pred             EEEEcCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe
Q 010287          307 RLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV  375 (513)
Q Consensus       307 ~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~  375 (513)
                      .+|......... +..+.+..+             ..+.+++|.  +..++.|......+.|+.+ +...
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~  170 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS  170 (275)
T ss_pred             EEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence            998876642221 223444433             467888888  6677777777788999985 4443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.50  E-value=0.21  Score=43.95  Aligned_cols=144  Identities=11%  Similarity=0.083  Sum_probs=86.7

Q ss_pred             cEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287          342 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY  417 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  417 (513)
                      .+.+.+++++++.++...  +  ..+.++...  +.....+.+..                 ++...|++++...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence            588899999999887644  3  556665543  33222222221                 237789999887777676


Q ss_pred             CCcEEEEe-cCCCCccceeecCCC--CceeEEEEcCCCCceeeec---CCCeEEE----ecCCC-CCccccCCccc-ccc
Q 010287          418 SNLFRVFG-CSEGSAESTTLEASK--NPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGNAF-DFS  485 (513)
Q Consensus       418 dg~i~vwd-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~---~d~~i~~----~~~~~-~~~~~~~~~~~-~~~  485 (513)
                      +...+++. ...+......+....  ..|..+.++|||..+|...   .++.+.+    ..... +.......... ...
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            67777774 333322223333221  2899999999999877654   3577777    22222 11000000011 224


Q ss_pred             CCeeEEEEeCCCCEEEEEc
Q 010287          486 MKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~~  504 (513)
                      ..+++++|.+++.+++.+.
T Consensus       166 ~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             CcceeeeecCCCEEEEEeC
Confidence            6899999999999887665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.32  E-value=1.5  Score=44.71  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCC----------cc--eeeecccCcccc-ccccCCeEEEEEeCCC--CeEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEIS----------NQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML  297 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~l  297 (513)
                      ..|..+.++++|..++..+...|.|-.+-..          +.  ..+.+.+....+ ..+...|..+.|+|.+  ...|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4588999999999999875555666555321          11  111111111111 2345678999999973  3788


Q ss_pred             EEEeCCCcEEEEEcCCcc
Q 010287          298 AYSSSKGSIRLIDMRQSA  315 (513)
Q Consensus       298 ~~~~~dg~i~vwd~~~~~  315 (513)
                      +.-..|+.+|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            889999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.24  E-value=0.87  Score=41.13  Aligned_cols=97  Identities=12%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             ccEEEEEEeecCCEEEEEeC--CeEEEEEccC-CCCCee-----eeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287          341 ASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPVA-----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                      ..-+.|+||||++.|+.++.  +.|.-|++.. .+....     .+....+..         +      .++...+|.+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------D------G~~vDadG~lw  227 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------D------GMAVDADGNLW  227 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------C------ceEEeCCCCEE
Confidence            44678999999998888764  8888887762 111110     011111110         0      57788888887


Q ss_pred             EEEeCCC-cEEEEecCCCCccceeecCCCCceeEEEE-cCCCCc
Q 010287          413 ATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPS  454 (513)
Q Consensus       413 ~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~  454 (513)
                      +++-.+| .|.+|+.. + ++...++.....+.+++| .++.+.
T Consensus       228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCE
Confidence            6555444 89999998 5 555566555455556666 344443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.12  E-value=0.0092  Score=59.00  Aligned_cols=116  Identities=11%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             CCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc
Q 010287          203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME  278 (513)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~  278 (513)
                      .-|.+.+|++...+.........+........+.-+.|.|   +.-++..+ .+++|++...++..+  .       -+.
T Consensus       151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~-------l~r  221 (1283)
T KOG1916|consen  151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S-------LFR  221 (1283)
T ss_pred             HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--H-------HHH
Confidence            3466778887654443333222222222223344455554   55566666 688888888765443  1       223


Q ss_pred             cccCCeEEEE-----------EeCCCCeEEEEEeCCCcEEEEEcC-Ccccccccceeecccc
Q 010287          279 DLTEVITSAE-----------FHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQE  328 (513)
Q Consensus       279 ~~~~~i~~~~-----------~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~  328 (513)
                      +|..++..++           .+||| +.|++++.||.++.|.+. ++....++...++.+.
T Consensus       222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            4555544433           58999 999999999999998764 3333334445555543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.11  E-value=1.6  Score=42.92  Aligned_cols=28  Identities=14%  Similarity=0.026  Sum_probs=22.9

Q ss_pred             ceEEEeecCCeEEEEEccCceeeeeecc
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~  154 (513)
                      ..++.++.++.|.-+|.++|+.......
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            4788888999999999999987766543

The alignment model contains an 8-bladed beta-propeller.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.04  E-value=2.1  Score=43.82  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=57.7

Q ss_pred             ccceeeEEEeCC-CCEEEEEeC----------CCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCe
Q 010287          397 IFDKFECCLSGD-GGRVATGSY----------SNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       397 ~~~v~~~~~s~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      ...+.++.|..| +.++++|+.          .|.|.+|.....+.+. ...  .-.+.+.++.. -+|+++|.  -+..
T Consensus       774 ~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~-~v~e~~v~Gav~aL~~-fngkllA~--In~~  849 (1096)
T KOG1897|consen  774 ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE-LVAETVVKGAVYALVE-FNGKLLAG--INQS  849 (1096)
T ss_pred             eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-eeeeeeeccceeehhh-hCCeEEEe--cCcE
Confidence            334556778888 677777753          4778888877632221 111  11233333322 25566554  4677


Q ss_pred             EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      |++++-....   .......+..++..+...-.++.+|+|.
T Consensus       850 vrLye~t~~~---eLr~e~~~~~~~~aL~l~v~gdeI~VgD  887 (1096)
T KOG1897|consen  850 VRLYEWTTER---ELRIECNISNPIIALDLQVKGDEIAVGD  887 (1096)
T ss_pred             EEEEEccccc---eehhhhcccCCeEEEEEEecCcEEEEee
Confidence            8883222211   1122234577888888888899888886

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.98  E-value=1.6  Score=41.90  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=25.1

Q ss_pred             ccEEEEEEcCCCCEEEee-cCCC----cEEEEEeeCCCC
Q 010287           36 DIISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRD   69 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg-~~dg----~i~iw~~~~~~~   69 (513)
                      ..+...++||+|++||.+ +..|    .|+++|+.+++.
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~  162 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF  162 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence            355578899999999865 3334    499999887754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=1  Score=39.28  Aligned_cols=185  Identities=10%  Similarity=0.132  Sum_probs=106.0

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.++.|+|  +.+.|++..+...-.||=..+|++.....+..-                                   
T Consensus        86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----------------------------------  128 (316)
T COG3204          86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----------------------------------  128 (316)
T ss_pred             ccccceeeCC--CcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence            5599999966  556788877777777776667776654332210                                   


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                              ...-.+.+..++++.++- .+..+.++.+...........
T Consensus       129 ----------------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~  168 (316)
T COG3204         129 ----------------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKV  168 (316)
T ss_pred             ----------------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccc
Confidence                                                    112345666666666665 588888887765543332211


Q ss_pred             cC--ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          272 VK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       272 ~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      .+  .............++|.|.+ ..|..+-+..-+.||.......... ......+...     ..-....+.++.|+
T Consensus       169 ~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~-~~~~~~~~~~-----~~~f~~DvSgl~~~  241 (316)
T COG3204         169 QKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLS-VHASLDPTAD-----RDLFVLDVSGLEFN  241 (316)
T ss_pred             eEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccc-cccccCcccc-----cceEeeccccceec
Confidence            10  01112225567899999998 7777788888788877653221000 0000000000     00011357788888


Q ss_pred             e-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287          350 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       350 p-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      + .+.+|+-+.+ +.+.-.|..  +.++..+..+.+
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g  275 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKG  275 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC--CCeeeeEEeccC
Confidence            7 4555555665 777777776  666665554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.90  E-value=0.66  Score=38.87  Aligned_cols=143  Identities=11%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             cCCeEEEEeccCCCEEEEE-c---------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe
Q 010287          232 DYHINSISNNSDGETFISA-D---------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS  301 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  301 (513)
                      ..+.+.-..+|+|++++.. .         .|.++.|-..  .+.-.        +...-.--+.++|+.+...+.++-+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~--------i~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVEL--------IWNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCcee--------eehhccCCccccccccCcEEEEEcc
Confidence            3445667789999996643 2         2445555433  11111        1111122357889888755666777


Q ss_pred             CCCcEEEEE--cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287          302 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       302 ~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~  378 (513)
                      .+-.|.-||  ..+|....+. ..++..+...    +.  ....-.++...+|.+.++.-. ++|...|..+ ++.+.++
T Consensus       178 ln~~V~a~dyd~~tG~~snr~-~i~dlrk~~~----~e--~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei  249 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRK-VIFDLRKSQP----FE--SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI  249 (310)
T ss_pred             CceEEeeeecCCCcccccCcc-eeEEeccCCC----cC--CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence            788887787  6777654321 1222211100    00  011223444557777776544 9999999997 9999988


Q ss_pred             ecccccccccccccccCCccceeeEEEeC
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      ..+...               +++++|--
T Consensus       250 klPt~q---------------itsccFgG  263 (310)
T KOG4499|consen  250 KLPTPQ---------------ITSCCFGG  263 (310)
T ss_pred             EcCCCc---------------eEEEEecC
Confidence            877554               45888864

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.83  E-value=1.3  Score=39.75  Aligned_cols=152  Identities=12%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             ccEEEEEEeecCCEEEEEeCCeE-EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          341 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~~~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      +.+..+..++||++++++..|.+ .-||--  ............              ..+.++.|+|++.+.+.+ ..|
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~--------------~riq~~gf~~~~~lw~~~-~Gg  207 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSS--------------RRIQSMGFSPDGNLWMLA-RGG  207 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SS--------------S-EEEEEE-TTS-EEEEE-TTT
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCcc--------------ceehhceecCCCCEEEEe-CCc
Confidence            67888889999999999987554 466643  111222111111              014489999998876654 788


Q ss_pred             cEEEEecCCCCcc----ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287          420 LFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP  495 (513)
Q Consensus       420 ~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  495 (513)
                      .|++=+.......    ..........+..+++.+++...|+|+....++-.++.+.+.....  ........+.+.|.+
T Consensus       208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~--~~~~~~n~~~i~f~~  285 (302)
T PF14870_consen  208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRV--GENVPSNLYRIVFVN  285 (302)
T ss_dssp             EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GG--GTTSSS---EEEEEE
T ss_pred             EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECcc--ccCCCCceEEEEEcC
Confidence            8887762211111    1111122334678899999888888875544444666666632211  122356789999998


Q ss_pred             CCCEEEEEcCCcEEEE
Q 010287          496 SENSIACAASNSLYMY  511 (513)
Q Consensus       496 ~~~~la~~~~~~~~i~  511 (513)
                      +.+-+|.|.++-+.-|
T Consensus       286 ~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  286 PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             TTEEEEE-STTEEEEE
T ss_pred             CCceEEECCCcEEEEe
Confidence            8888888888776655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.78  E-value=1.4  Score=39.61  Aligned_cols=238  Identities=13%  Similarity=0.098  Sum_probs=110.7

Q ss_pred             cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ...+..|.|..+..-+++|..+.|  +....+....+....   .... ......++.|..+  ..+++ +..+.|.  .
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~iv-G~~g~ll--~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIV-GEPGLLL--H   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEE-EETTEEE--E
T ss_pred             CCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEE-cCCceEE--E
Confidence            346889999977788888877754  444445544432211   1111 1234567777654  44554 4455432  2


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ...+-...+.+.. .. .          ..+....+....++..++++..|.  ||.....++.-+.+.....       
T Consensus        86 T~DgG~tW~~v~l-~~-~----------lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~-------  144 (302)
T PF14870_consen   86 TTDGGKTWERVPL-SS-K----------LPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS-------  144 (302)
T ss_dssp             ESSTTSS-EE-----T-T-----------SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S---------
T ss_pred             ecCCCCCcEEeec-CC-C----------CCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc-------
Confidence            2222221111110 00 0          002233444444444444444343  4444433444443322111       


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec--
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK--  468 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~--  468 (513)
                             -.+..+.-++||++++++.....+.-||.-.. .-...-......+..+.|.|++.+.+.+ ..|.++..+  
T Consensus       145 -------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  145 -------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             ---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred             -------ceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence                   01347778899999998877666667775422 1112223356789999999998876655 788888822  


Q ss_pred             -CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          469 -GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       469 -~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                       ..+.+.... .....-.-.+..++|.+++...|+++.+.++.
T Consensus       216 ~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  216 DDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             TEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             CCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence             111111000 00111133489999999999999888876654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.72  E-value=0.23  Score=48.93  Aligned_cols=109  Identities=13%  Similarity=0.065  Sum_probs=68.4

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE--cCCCCceeeecCCCeEEEecCC-------CC-
Q 010287          403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGA-------DN-  472 (513)
Q Consensus       403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~~~~-------~~-  472 (513)
                      +.-+.-++.-++-+....+.|||...+..+....-...++|..+.|  .|+++.+++.+....|.++...       .+ 
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3344455555555556789999998774222111144677888766  6899999999999999882111       11 


Q ss_pred             CccccCCcccccc-CCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          473 SALDANGNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       473 ~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      +..-......+|+ .+|.+..|.++|. |++|+.+.++||.
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~d  154 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFD  154 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEEC
Confidence            1000011112343 6899999999986 6677788888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.60  E-value=0.087  Score=53.65  Aligned_cols=103  Identities=14%  Similarity=0.233  Sum_probs=72.8

Q ss_pred             eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC
Q 010287          295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG  373 (513)
Q Consensus       295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~  373 (513)
                      ..++.|+..|.+-..|.... +..    ...+.          .-.++|++++|+.+|..++.|-. |.|.+||+.. ++
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L~~----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k  163 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-LGP----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK  163 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-cch----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence            57889999999999887653 110    00010          11268999999999999999865 9999999996 78


Q ss_pred             CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          374 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +++.+..+..+..            .+.-+.+..++..++++...|.  +|.+.
T Consensus       164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            8888877665432            1335566667777888887776  56543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.45  E-value=0.44  Score=48.45  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC-CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCC
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN  472 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  472 (513)
                      +...+.|..+.++|+|.+|+..|..| |.|-.+.. .+.. ..+++....+.+-.+.-+..++.+.              
T Consensus        81 ~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~--------------  144 (717)
T PF10168_consen   81 NPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSN--------------  144 (717)
T ss_pred             CCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCC--------------
Confidence            34556788999999999999888766 44545432 1111 1222223333333333332222111              


Q ss_pred             CccccCCccccccCCeeEEEEeCCC---CE-EEEEcCCcEEEEe
Q 010287          473 SALDANGNAFDFSMKLLHLAWHPSE---NS-IACAASNSLYMYY  512 (513)
Q Consensus       473 ~~~~~~~~~~~~~~~i~~~~~sp~~---~~-la~~~~~~~~i~~  512 (513)
                                 .+..|..+.|||.+   .. ++-.+++.+++|+
T Consensus       145 -----------~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~  177 (717)
T PF10168_consen  145 -----------SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD  177 (717)
T ss_pred             -----------CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence                       24567778888774   33 4466677777776

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.34  E-value=1.7  Score=41.92  Aligned_cols=70  Identities=9%  Similarity=-0.010  Sum_probs=45.2

Q ss_pred             EEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          237 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       237 ~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      .+.|+|....|+.- ....-.+++.......++.      .+ ...+.|.|.+|.+||.+++++.+..=.-.+||-..
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka------Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA------DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEE------ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            45688988887764 3222234565544433321      22 23677999999999977777767666778898544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.34  E-value=2.1  Score=38.74  Aligned_cols=91  Identities=8%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      +-...+.++|+||+..++++=+..+.|.-|++..  +....+.....           .....+..-.++...+|.+.++
T Consensus       161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----------~~~~~G~PDG~~vDadG~lw~~  229 (307)
T COG3386         161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----------FDEEPGLPDGMAVDADGNLWVA  229 (307)
T ss_pred             cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----------ccCCCCCCCceEEeCCCCEEEe
Confidence            3445678999999944445545568888887753  22211111111           1112255666788888888865


Q ss_pred             EeC--CeEEEEEccCCCCCeeeeecccc
Q 010287          358 RDY--MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       358 ~~~--~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      +-.  +.|.+|+.+  ++.+..+..+..
T Consensus       230 a~~~g~~v~~~~pd--G~l~~~i~lP~~  255 (307)
T COG3386         230 AVWGGGRVVRFNPD--GKLLGEIKLPVK  255 (307)
T ss_pred             cccCCceEEEECCC--CcEEEEEECCCC
Confidence            433  499999987  788887776643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.29  E-value=2.9  Score=40.13  Aligned_cols=114  Identities=15%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             eEEEEeccCCCEEEEE-c-C----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC----
Q 010287          235 INSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----  304 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----  304 (513)
                      +...+++|++++++.+ + .    ..|+++|+++++.....       +..  .....+.|.+++ +.|+....+.    
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCccccc
Confidence            4467899999999976 3 3    34999999987544321       111  112349999998 5554444332    


Q ss_pred             -------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccC
Q 010287          305 -------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINM  370 (513)
Q Consensus       305 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~  370 (513)
                             .|..|++.+.....  ...++.....          .....+..++|+++|+...    . ..+.+.++..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                   26666665544321  2344443321          1256788999999988632    2 4577777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.21  E-value=1.7  Score=37.09  Aligned_cols=63  Identities=11%  Similarity=0.080  Sum_probs=38.0

Q ss_pred             eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..+++..+..| .|++.+..|..+.....+.        +.......+.+..|-. ..|..+...|.+.--..
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVyks--------kcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--------KCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTK  164 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEec--------ccCCceeccceecCCC-ceEEEEeccceEEEEcc
Confidence            45678888888 7999999999876655431        2223333455566633 34455556665544433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=0.12  Score=52.65  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=65.9

Q ss_pred             cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      .+..++.|++ |.+-..|...+-.+     .|.+.          ....+|++++|+.+|..++.|-.+|.|.+||...+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP-----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch-----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            5667888887 88888887742111     12211          11124679999999999999999999999999976


Q ss_pred             CccceeecCCCCceeEEEE---cCCCCceeeecCCCe
Q 010287          430 SAESTTLEASKNPMRRQVQ---TPSRPSRPLGSLSGV  463 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~  463 (513)
                       ++.+.+..+..|...+.+   ..++..++++..-|.
T Consensus       163 -k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  163 -KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             -cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence             555667666666555443   344445667666663

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.83  E-value=1.4  Score=43.69  Aligned_cols=116  Identities=10%  Similarity=0.139  Sum_probs=71.0

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      +.-+.-+.-++.-++- +..++.|||.+.+....+.      .+ ...+.|.++.|.  |++ +.+++.+....|.+|--
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence            3344444444444444 5788999999866533321      22 346789999985  677 77888889999998854


Q ss_pred             CC-----cccccccceeeccccCCCCcccccccc-ccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287          312 RQ-----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN  369 (513)
Q Consensus       312 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~l~~~~~~~v~iwd~~  369 (513)
                      ..     .......++.++.          ..|. .+|.+..|-++|.++++++ ..+.|+|-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i----------~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDI----------SSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEe----------ecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence            21     1111122222222          1222 4688999999887776544 578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.64  E-value=0.15  Score=29.87  Aligned_cols=33  Identities=21%  Similarity=0.598  Sum_probs=27.4

Q ss_pred             CCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCc
Q 010287          282 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       282 ~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~  314 (513)
                      +.|.++.|+|...  .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999998763  58888888999999999863

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.42  E-value=3.3  Score=36.48  Aligned_cols=155  Identities=12%  Similarity=0.124  Sum_probs=86.5

Q ss_pred             CeEEEEeccCCCEEEEEc--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE-
Q 010287          234 HINSISNNSDGETFISAD--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd-  310 (513)
                      .+.+.+++++++.++...  ++.-.+|-...+.....+       +  ....+....|++++ .+.+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence            478899999999877642  444444444433332211       1  23367888999997 7777666666667664 


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----CCeEEEEEccCCCCC-eeeeecccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR  385 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~~~v~iwd~~~~~~~-~~~~~~~~~~~  385 (513)
                      ...+....   ...+...          ..+.|..+.+||||..++.-.    ++.|.+--+..+..- ...+.......
T Consensus        95 ~~~g~~~~---~~v~~~~----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~  161 (253)
T PF10647_consen   95 SASGTGEP---VEVDWPG----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA  161 (253)
T ss_pred             cCCCccee---EEecccc----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence            33333211   1111111          012699999999999887632    378887766532221 11111110000


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      .        .....++.+.|.+++.+++.+...+
T Consensus       162 ~--------~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  162 P--------PLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             c--------cccCcceeeeecCCCEEEEEeCCCC
Confidence            0        0111356899999998877665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=4.8  Score=38.07  Aligned_cols=157  Identities=11%  Similarity=0.114  Sum_probs=100.3

Q ss_pred             eEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          235 INSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ...++++++++.+..+ .   ++++.+.|..+.......        .....+ ..+++.|++...+++-..++.|.+.|
T Consensus       118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            5678899999888876 3   578888887765544331        111233 88999999954666666899999999


Q ss_pred             cCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeee-eeccccc
Q 010287          311 MRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEHL  384 (513)
Q Consensus       311 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~-~~~~~~~  384 (513)
                      ..+..... ........             ......+.++|+|.++....+    +.+...|... +..... .......
T Consensus       189 ~~~~~v~~~~~~~~~~~-------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~  254 (381)
T COG3391         189 TSGNSVVRGSVGSLVGV-------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA  254 (381)
T ss_pred             CCCcceecccccccccc-------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence            76654320 00000111             123466889999997777543    4788888775 333332 2221110


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCC
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG  429 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  429 (513)
                                     -..+.++|+|+++.+.. ..+.+.+-|..+.
T Consensus       255 ---------------~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         255 ---------------PRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ---------------CCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence                           12688999999988774 4488888888765

>PRK13684 Ycf48-like protein; Provisional

Probab=94.24  E-value=4.5  Score=37.38  Aligned_cols=153  Identities=9%  Similarity=0.040  Sum_probs=86.6

Q ss_pred             ccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          341 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      +.+.++.+.|++.+++++..|.+..- .+..++...........              .++.+.+.++++.++++. .|.
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~--------------~l~~i~~~~~g~~~~vg~-~G~  236 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSR--------------RLQSMGFQPDGNLWMLAR-GGQ  236 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcc--------------cceeeeEcCCCCEEEEec-CCE
Confidence            56888999999988888877755432 11112223222221110              134788999998777654 576


Q ss_pred             EEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          421 FRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       421 i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      +++=....+..-. ....  .....+..+.+.+++..++.+ .+|.+.. ..+..-+......  .......+.+.|..+
T Consensus       237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~--~~~~~~~~~~~~~~~  313 (334)
T PRK13684        237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVG--EEVPSNFYKIVFLDP  313 (334)
T ss_pred             EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcC--CCCCcceEEEEEeCC
Confidence            6432233321111 0111  122346678888887766555 5676666 3433344211110  112346888999988


Q ss_pred             CCEEEEEcCCcEEEEe
Q 010287          497 ENSIACAASNSLYMYY  512 (513)
Q Consensus       497 ~~~la~~~~~~~~i~~  512 (513)
                      ++.+|+|..+.|..|.
T Consensus       314 ~~~~~~G~~G~il~~~  329 (334)
T PRK13684        314 EKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CceEEECCCceEEEec
Confidence            8999988888777664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.18  E-value=0.19  Score=29.47  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=26.6

Q ss_pred             ccEEEEEEcCC-C--CEEEeecCCCcEEEEEeeC
Q 010287           36 DIISAIEFDKS-G--DHLATGDRGGRVVLFERTD   66 (513)
Q Consensus        36 ~~V~~v~~sp~-g--~~latg~~dg~i~iw~~~~   66 (513)
                      ++|.++.|||. +  ++||.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999985 4  6999999999999999763

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.09  E-value=2.8  Score=42.19  Aligned_cols=74  Identities=7%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             CCeEEEEec--cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC--Ce---EEEEEeCCC
Q 010287          233 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG  304 (513)
Q Consensus       233 ~~v~~~~~~--~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg  304 (513)
                      ..+++++++  ...++||++ ....|.||-+.........   .  .-..+...|.+++|-++.  +.   .+++++-.|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~---~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G  238 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH---V--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG  238 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc---c--cccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence            358899998  778888888 5777888766542211110   0  112356778899997654  12   788899999


Q ss_pred             cEEEEEc
Q 010287          305 SIRLIDM  311 (513)
Q Consensus       305 ~i~vwd~  311 (513)
                      .+.+|++
T Consensus       239 ~v~~~~I  245 (717)
T PF08728_consen  239 EVWTFKI  245 (717)
T ss_pred             cEEEEEE
Confidence            9998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.86  E-value=9.7  Score=39.86  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +....+.|.++...|+.++...+.++|+++......+      ........|.++.-+|..+..++.. ....|...|+.
T Consensus       204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~  276 (765)
T PF10214_consen  204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK  276 (765)
T ss_pred             CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence            3356788999988999998889999999866542212      1233457789999888843444443 33678778877


Q ss_pred             Cc
Q 010287          313 QS  314 (513)
Q Consensus       313 ~~  314 (513)
                      ..
T Consensus       277 ~~  278 (765)
T PF10214_consen  277 SS  278 (765)
T ss_pred             CC
Confidence            63

These proteins are found in fungi.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.86  E-value=7.2  Score=39.42  Aligned_cols=166  Identities=13%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             CCEEEEEcCCeEEEEEcCCCcceee-----ecccCccccc---------cccCCeEEEEEe--CCCCeEEEEEeCCCcEE
Q 010287          244 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANME---------DLTEVITSAEFH--PTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       244 ~~~l~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~  307 (513)
                      ..+++.+..+.|.||++........     .+..+|....         .....|+.|...  -.. ..|+.|..||.|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~-EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE-EVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe-eEEEEEecCCeEE
Confidence            6788888889999999875433221     0111110000         011224444332  233 6889999999999


Q ss_pred             EEEcCCcccccccceeeccccC-----CCCc-cccccccccEEEEEEe--ecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287          308 LIDMRQSALCDTHSKLFEEQEA-----PGTR-SFFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~v~~i~~s--p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~  378 (513)
                      +|.+.+-...   +........     ...+ .+.......+++++++  ...++||+++. ..|.||-...........
T Consensus       128 ~Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  128 AYYTETIIEA---IERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV  204 (717)
T ss_pred             EEEHHHHHHH---HHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence            9976431100   000000000     0000 1112233578999998  77888888876 888888766411111111


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCC---C---EEEEEeCCCcEEEEec
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC  426 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~vwd~  426 (513)
                      ..+..             ...|-+++|-++.   .   +|++++-.|.+.+|++
T Consensus       205 ~s~~~-------------~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  205 PSHQH-------------SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccc-------------ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11110             0013378887643   2   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=0.9  Score=47.13  Aligned_cols=153  Identities=12%  Similarity=0.007  Sum_probs=91.8

Q ss_pred             CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCc----cccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      -.+..+...+|+...++.   .+-.|..||+++-...... ..+|    ...........++.|+|.-+...+.+..|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-hccccccccchhccccccccccccCCccchhhhhccccc
Confidence            345566667776665553   3557889998753321100 0011    0111122345688999987677888889999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      |++..+......   +..+..             ....++++|+|.|+.++.|.. |++.-|...  .+....+......
T Consensus       180 l~V~~~~~~~~~---v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~  241 (1405)
T KOG3630|consen  180 LRVKSTKQLAQN---VTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE  241 (1405)
T ss_pred             hhhhhhhhhhhh---hcccCc-------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC
Confidence            998876432221   111111             146899999999999999987 988888765  3333333333221


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATG  415 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  415 (513)
                      .           .+.|.+++|-....++++-
T Consensus       242 e-----------~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  242 E-----------NYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             C-----------CcceeEEEEecceeEEEEe
Confidence            1           2236688898877777643

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.61  E-value=3.8  Score=38.52  Aligned_cols=155  Identities=9%  Similarity=-0.013  Sum_probs=75.4

Q ss_pred             CCeEEEEEeCCCCeEEEEEe-----------CCC-cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          282 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      .....|+|.++| +++++-.           ..+ .|.+++-.++.-.......+-.            .......+++.
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------------~l~~p~Gi~~~   80 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------------ELSMVTGLAVA   80 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------------CCCCccceeEe
Confidence            346789999998 7666543           223 6766664433211111122211            11345788999


Q ss_pred             ecCCEEEEEeCCeEEEE-EccCCCCC---ee-eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------
Q 010287          350 RNGRHILSRDYMTLKLW-DINMDSGP---VA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------  418 (513)
Q Consensus       350 p~~~~l~~~~~~~v~iw-d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  418 (513)
                      +++ ++++ +...|..| |....++.   .. .+..-....     .+...   ....++|.|||.+.++-+..      
T Consensus        81 ~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~~~~---~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        81 VGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NNHHH---SLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             cCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Ccccc---cccCceECCCCCEEEecccCCCceec
Confidence            888 5544 33444434 54321111   11 111100000     00000   02378999999876644411      


Q ss_pred             -------------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          419 -------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       419 -------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                                   |.|.-++...+. ....-.++.+ ...++|++++.++++-..+
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQN-PYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCe-EEEEecCcCC-CccceECCCCCEEEEccCC
Confidence                         345555555432 2122223333 3478999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=1.5  Score=41.53  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=54.1

Q ss_pred             ceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccC
Q 010287          399 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN  478 (513)
Q Consensus       399 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  478 (513)
                      .|..+..++.|..++-.+.+|.+..+=.+..++- ..++.....|.+-.+.-+.+++.+.   -                
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~-s~~eDgk~~v~CRt~~i~~~~ftss---~----------------  164 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN-SEFEDGKSTVNCRTTPVAERFFTSS---T----------------  164 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCcc-ceecCCCceEEEEeecccceeeccC---C----------------
Confidence            5668889999999999998986655433322221 2333333445555555443333221   0                


Q ss_pred             CccccccCCeeEEEEeCCC----CEEEEEcCCcEEEEe
Q 010287          479 GNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY  512 (513)
Q Consensus       479 ~~~~~~~~~i~~~~~sp~~----~~la~~~~~~~~i~~  512 (513)
                            .-.+.+++|||+.    .+++..+++.+++|+
T Consensus       165 ------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~  196 (741)
T KOG4460|consen  165 ------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS  196 (741)
T ss_pred             ------ceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence                  2345788999986    456677889899886

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.38  E-value=7.2  Score=36.86  Aligned_cols=149  Identities=13%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             cEEEEEEeecCCEEEEEeCCeEEE-EEccCCCCC-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          342 SISDIKFARNGRHILSRDYMTLKL-WDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~~~v~i-wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      ....+..++++.+++.+..|.+.. ||-   +.. -.........              .++++.+.+++.+++++ .+|
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~~--------------~l~~v~~~~dg~l~l~g-~~G  301 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASAR--------------RIQNMGWRADGGLWLLT-RGG  301 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCcc--------------ceeeeeEcCCCCEEEEe-CCc
Confidence            455566778999888888765433 332   222 1222211111              13478899999887765 456


Q ss_pred             cEEEEecCCCCc----cceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEE
Q 010287          420 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA  492 (513)
Q Consensus       420 ~i~vwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~  492 (513)
                      .+. +....+..    .......  ....+..+.+.+++..+++| .+|.+.. ..+.+.+.....  .-......+.+.
T Consensus       302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~--~~~~~~~ly~v~  377 (398)
T PLN00033        302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKG--ADNIAANLYSVK  377 (398)
T ss_pred             eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccc--cCCCCcceeEEE
Confidence            553 33333321    1122221  22357788899888877766 4666665 455555421111  112246788999


Q ss_pred             EeCCCCEEEEEcCCcEEEEe
Q 010287          493 WHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       493 ~sp~~~~la~~~~~~~~i~~  512 (513)
                      |.++++.+++|..+.+..|.
T Consensus       378 f~~~~~g~~~G~~G~il~~~  397 (398)
T PLN00033        378 FFDDKKGFVLGNDGVLLRYL  397 (398)
T ss_pred             EcCCCceEEEeCCcEEEEeC
Confidence            99998888888887776653

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=93.36  E-value=13  Score=39.82  Aligned_cols=70  Identities=16%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             EEEEEeecCCEEEEEeC-CeE-EEEEccCCCCCeeeeecccccccccccccc-cCC------------ccceeeEEEeCC
Q 010287          344 SDIKFARNGRHILSRDY-MTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDS------------IFDKFECCLSGD  408 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~~-~~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~v~~~~~s~~  408 (513)
                      .+|+++++|.+.++-+| ..| ++-.+.+++ .+..+.+....-.  |..-. .+|            +....+++.+||
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~--C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd  672 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCS--CDVAACCDCFSLRDVAATQAKLNSPYALAVSPD  672 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCC--cccccCCccccccchhhhccccCCcceEEECCC
Confidence            78899999998888665 222 233333323 4444444332211  11111 111            123457899999


Q ss_pred             CCEEEEEe
Q 010287          409 GGRVATGS  416 (513)
Q Consensus       409 ~~~l~~~~  416 (513)
                      |...++-.
T Consensus       673 g~v~IAD~  680 (1899)
T KOG4659|consen  673 GDVIIADS  680 (1899)
T ss_pred             CcEEEecC
Confidence            98766543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.27  E-value=0.44  Score=39.77  Aligned_cols=66  Identities=11%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287          244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      +..+++| .+|.|.+|..+........       .......|.++--.-+...+..+++.||.|+.|++.-++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh-------hhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence            4556667 8999999998743332221       1112233333322222225888999999999999876543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.25  E-value=7.4  Score=36.57  Aligned_cols=233  Identities=13%  Similarity=0.126  Sum_probs=95.9

Q ss_pred             CCCEEEEE--cCCeEEEEEcCCCcceeeecc-cCcccccc--ccCCeEEEEEeCCCCeEEEEEeC------CCcEEEEEc
Q 010287          243 DGETFISA--DDLRINLWNLEISNQSFNIVD-VKPANMED--LTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDM  311 (513)
Q Consensus       243 ~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~------dg~i~vwd~  311 (513)
                      +.++|+..  ..++|++.|..+.-...++.. +.+..+..  .-.....+..-|+| .+++++-.      -|-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence            45666664  699999999985433222211 11111111  11233455556787 67766532      245677776


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--------------------C-CeEEEEEccC
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------Y-MTLKLWDINM  370 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--------------------~-~~v~iwd~~~  370 (513)
                      .+-+.    ...++.....         ...-..+-|.|....+++..                    . .++.+||+..
T Consensus       165 ~tf~v----~g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~  231 (461)
T PF05694_consen  165 ETFEV----KGRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST  231 (461)
T ss_dssp             TT--E----EEE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred             ccccc----cceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence            65443    2233322111         12335556666666666531                    2 5799999996


Q ss_pred             CCCCeeeeecccccccccccccccCCccceeeEEEe--CCCCEEEE-EeCCCcEEEEec-CCCCc---cceeec-----C
Q 010287          371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS--GDGGRVAT-GSYSNLFRVFGC-SEGSA---ESTTLE-----A  438 (513)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~-~~~dg~i~vwd~-~~~~~---~~~~~~-----~  438 (513)
                       .+.++++.......-             ...+.|.  |+..+=++ +.-..+|..|-. ..+.-   ....+.     +
T Consensus       232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence             888888865542211             1245554  44444332 224445555433 33311   111111     1


Q ss_pred             C------------CCceeEEEEcCCCCceeee-cCCCeEEEecCCCCCccccCCccc----------------cccCCee
Q 010287          439 S------------KNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAF----------------DFSMKLL  489 (513)
Q Consensus       439 ~------------~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~----------------~~~~~i~  489 (513)
                      -            ..-++.+.+|.|.++|... -.+|.++.++-.++....+.++..                ...+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq  377 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ  377 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence            1            1236788999999998654 568999884444433322222111                1233457


Q ss_pred             EEEEeCCCCEEEEE
Q 010287          490 HLAWHPSENSIACA  503 (513)
Q Consensus       490 ~~~~sp~~~~la~~  503 (513)
                      -+..|-||++|-+.
T Consensus       378 MvqlS~DGkRlYvT  391 (461)
T PF05694_consen  378 MVQLSLDGKRLYVT  391 (461)
T ss_dssp             -EEE-TTSSEEEEE
T ss_pred             eEEEccCCeEEEEE
Confidence            78899999988754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.22  E-value=5.5  Score=35.02  Aligned_cols=212  Identities=12%  Similarity=0.097  Sum_probs=110.6

Q ss_pred             cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287          277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  356 (513)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~  356 (513)
                      +.+....+.++.|+|+. +.|++......-.|+=...|+..    +.+.....           .....|.+..+|++.+
T Consensus        81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gdli----rtiPL~g~-----------~DpE~Ieyig~n~fvi  144 (316)
T COG3204          81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLI----RTIPLTGF-----------SDPETIEYIGGNQFVI  144 (316)
T ss_pred             cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceE----EEeccccc-----------CChhHeEEecCCEEEE
Confidence            44555669999999998 66666666666666655666653    33221110           2244577777777777


Q ss_pred             EEeC-CeEEEEEccCCCCCeeeeecccccccccccccc-cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-
Q 010287          357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-  433 (513)
Q Consensus       357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-  433 (513)
                      +-.. +.+.++.+..+...+ ......-   .+..... |..   .-.++|+|..+.|+.+-+-.-+.||......... 
T Consensus       145 ~dER~~~l~~~~vd~~t~~~-~~~~~~i---~L~~~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         145 VDERDRALYLFTVDADTTVI-SAKVQKI---PLGTTNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             EehhcceEEEEEEcCCccEE-eccceEE---eccccCCCCcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence            7554 888888887522222 1111000   0000000 111   2279999999999988887778887766432111 


Q ss_pred             -eeecCC-------CCceeEEEEcCCCC-ceeeecCCCeEEE--ecCCCCCccccCCccccccC---CeeEEEEeCCCCE
Q 010287          434 -TTLEAS-------KNPMRRQVQTPSRP-SRPLGSLSGVVRR--VKGADNSALDANGNAFDFSM---KLLHLAWHPSENS  499 (513)
Q Consensus       434 -~~~~~~-------~~~v~~~~~~~~~~-~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~---~i~~~~~sp~~~~  499 (513)
                       .....+       -..+..+.+.+... +|+.+.+++.+.-  ..+.......+.....+.+.   ....++..++|.+
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence             111111       12344556665433 4444444444332  11111110011111112222   3456788888887


Q ss_pred             EEEEcCCcEEEE
Q 010287          500 IACAASNSLYMY  511 (513)
Q Consensus       500 la~~~~~~~~i~  511 (513)
                      -+++=-|.++.|
T Consensus       298 YIvSEPnlfy~F  309 (316)
T COG3204         298 YIVSEPNLFYRF  309 (316)
T ss_pred             EEEecCCcceec
Confidence            666666666555

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.15  E-value=3.3  Score=40.03  Aligned_cols=156  Identities=11%  Similarity=0.057  Sum_probs=85.1

Q ss_pred             CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC---eEEEEEeCCCcE
Q 010287          233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSI  306 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i  306 (513)
                      .++..++|....+.+.+.   .+|.+++=|-.               .-+.-..|..+.|.|-+.   -.+++......|
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV   84 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV   84 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence            458889998554555554   25655544432               123345689999988521   245556778899


Q ss_pred             EEEEcCCcccccccc---eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287          307 RLIDMRQSALCDTHS---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      .||.+..........   .+.+..+.   ..      ---..+.|+|....|+.-.. ..-.+++++.+...++.--...
T Consensus        85 tVWqL~~s~~e~~K~l~sQtcEi~e~---~p------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~  155 (671)
T PF15390_consen   85 TVWQLCPSTTERNKLLMSQTCEIREP---FP------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS  155 (671)
T ss_pred             EEEEeccCccccccceeeeeeeccCC---cc------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC
Confidence            999986322111100   11111110   00      11245779999888887443 2334555554333332211112


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS  427 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  427 (513)
                      +.               |.+.+|.+||+.|+.+- ..=.-++||-.
T Consensus       156 G~---------------IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  156 GL---------------IHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ce---------------EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            21               44899999999877553 33356788754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.04  E-value=10  Score=37.62  Aligned_cols=28  Identities=14%  Similarity=-0.004  Sum_probs=22.3

Q ss_pred             ceEEEeecCCeEEEEEccCceeeeeecc
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~  154 (513)
                      ..++.++.|+.+.-.|.++|+.......
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            3677788899999999999988766544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.89  E-value=1.6  Score=36.44  Aligned_cols=102  Identities=12%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCceeEEEEcCCCCceeeecCC---C---eEEEecCCCCCcc-------
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLS---G---VVRRVKGADNSAL-------  475 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~~~~~~~~~~~-------  475 (513)
                      +.|..+...+.|.+|++...... ...+. .-+.|..+.++..|.+|++--.+   .   .+|++..|+....       
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555466788999999843333 23333 34788899999999999986433   2   4555333333210       


Q ss_pred             ccCC------------c-----cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          476 DANG------------N-----AFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       476 ~~~~------------~-----~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .+.+            .     -+..+.++.+++-.|-..-|++|+.+.+.+|.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~  161 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT  161 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence            0111            0     11235678999999998889999999999985

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=3.3  Score=43.26  Aligned_cols=151  Identities=9%  Similarity=0.077  Sum_probs=86.8

Q ss_pred             cEEEEEEeecCCEEEEEe---CCeEEEEEccCCCCCe----eeeecccccccccccccccCCccceeeEEEeCCCC-EEE
Q 010287          342 SISDIKFARNGRHILSRD---YMTLKLWDINMDSGPV----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVA  413 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~---~~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  413 (513)
                      ++..+...+|+...++..   +-.|..||++.-....    ..+..+..      .++  +..+ ..++.|.|.-. ..+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t------s~e--k~vf-~~~~~wnP~vp~n~a  172 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT------SFE--KPVF-QLKNVWNPLVPLNSA  172 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc------hhc--cccc-cccccccCCccchhh
Confidence            456666677877666532   2578999987511111    11111111      011  0111 22677887643 345


Q ss_pred             EEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287          414 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       414 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  493 (513)
                      ....|+.|++..+....+....+ .......+++|+|.|+.++.|..+|.+.-+...-....++......-..+|.++.|
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence            66788999988776442222221 23456789999999999999999998866222211111122221112578999999


Q ss_pred             eCCCCEEEE
Q 010287          494 HPSENSIAC  502 (513)
Q Consensus       494 sp~~~~la~  502 (513)
                      -....+|++
T Consensus       252 l~t~eflvv  260 (1405)
T KOG3630|consen  252 LSTQEFLVV  260 (1405)
T ss_pred             ecceeEEEE
Confidence            998888874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.20  E-value=1.1  Score=38.41  Aligned_cols=79  Identities=9%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEc
Q 010287          289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  368 (513)
Q Consensus       289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~  368 (513)
                      +..++ .++++.+.+|.+++||+.+++.....+.....-......  -......|..+.++.+|.-+++-++|..+.|+.
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            33455 678999999999999999987654332111110000000  002346789999999999888877788899987


Q ss_pred             cC
Q 010287          369 NM  370 (513)
Q Consensus       369 ~~  370 (513)
                      ..
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            74

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.68  E-value=0.59  Score=39.04  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~  466 (513)
                      -+.-+++|+.+|.|++|+.............-..++-.+ ....++.+..++..|+.||.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~  128 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRA  128 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceee
Confidence            345688999999999998774333222222222333332 23344557788899999998

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.48  E-value=5.1  Score=30.64  Aligned_cols=80  Identities=16%  Similarity=0.279  Sum_probs=50.6

Q ss_pred             EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      +.-.|.....-|+.++..|+|.|++.......                          ..+  ....++.|.+...|++|
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~--------------------------~~~--~~~~i~~LNin~~ital   53 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR--------------------------TGR--QDSDISFLNINQEITAL   53 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccc--------------------------ccc--ccCceeEEECCCceEEE
Confidence            44567777778999999999999996543321                          000  11225555566778888


Q ss_pred             EEee---cCCCceEEEeecCCeEEEEEccCce
Q 010287          119 RWCQ---SANSALYLLSTNDKTIKLWKVQEKK  147 (513)
Q Consensus       119 ~~~~---~~~~~~l~s~s~d~~i~vw~~~~~~  147 (513)
                      +--+   ......|+.|+ ...+..||+....
T Consensus        54 aaG~l~~~~~~D~LliGt-~t~llaYDV~~N~   84 (136)
T PF14781_consen   54 AAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS   84 (136)
T ss_pred             EEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence            6544   33344566655 4568999998764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.06  E-value=11  Score=33.84  Aligned_cols=191  Identities=10%  Similarity=0.063  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC-----eEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      .|.+||+.+.+ ..+.+.+.+.... ..+.+..+.+....+     ..+++=+..+-|.|+|+.+++.    -+......
T Consensus        35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s----~Rv~~~~~  108 (287)
T PF03022_consen   35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS----WRVLHNSF  108 (287)
T ss_dssp             EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE----EEEETCGC
T ss_pred             EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE----EEEecCCc
Confidence            57778888765 3333333322222 356688888877321     2344444457899999998764    22222211


Q ss_pred             CCCC--ccc-----cccccccEEEEEEee---cCCEEEEEeCCeEEEEEccCC----CCCeeeeeccccccccccccccc
Q 010287          329 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYEN  394 (513)
Q Consensus       329 ~~~~--~~~-----~~~~~~~v~~i~~sp---~~~~l~~~~~~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      .+.+  ..+     .-.....+..++.+|   +++.|.-..-..-++|.+.+.    .......    .....+..+...
T Consensus       109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~----~~~~~v~~lG~k  184 (287)
T PF03022_consen  109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ----ALASQVQDLGDK  184 (287)
T ss_dssp             TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-----HHHT-EEEEE-
T ss_pred             ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc----cccccceecccc
Confidence            1111  000     001223477778776   667777655433345554420    0000000    000000000000


Q ss_pred             CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc--ceeec--CC-CCceeEEEEcC--CCCcee
Q 010287          395 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE--STTLE--AS-KNPMRRQVQTP--SRPSRP  456 (513)
Q Consensus       395 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~--~~-~~~v~~~~~~~--~~~~l~  456 (513)
                      .  ...-.++++++|.+.++--..+.|..|+....-..  ...+.  .. -.....+.+.+  ++.+.+
T Consensus       185 ~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v  251 (287)
T PF03022_consen  185 G--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV  251 (287)
T ss_dssp             ----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred             C--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence            0  00126889999988888889999999998862111  11111  11 23456777776  544433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.92  E-value=10  Score=35.62  Aligned_cols=127  Identities=10%  Similarity=0.090  Sum_probs=74.2

Q ss_pred             EEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          236 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      +.+-|....+.+++...|.+.-|.....+....+      .+ -...++|.++.|++|. +.+|.--.+..|.+++....
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpi------Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI------SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCc------eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence            4555665566666555566666766533321110      11 1235689999999998 99999999999999987332


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      +.........+.            ....|....|+.+ .-++.-.+..+.+|.+......++..+.+.
T Consensus        99 ~~~l~~~~~ck~------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~  153 (657)
T KOG2377|consen   99 NSQLEYTQECKT------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN  153 (657)
T ss_pred             chhhHHHHHhcc------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence            221111111111            1145888999865 555555554577777765344444444444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.64  E-value=3.3  Score=38.55  Aligned_cols=168  Identities=13%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceee-ecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEE
Q 010287          230 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .....|..+-..|||+.+..-...++.++++.+.....+ +.+..|.   .....|+ .+..-..+ .-+..+..||.|.
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg---~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vs  293 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG---DSRHQVTEQLYLLSGG-FSLLVVHEDGLVS  293 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC---chHHHHHHHHHHHhCc-eeEEEEcCCCcee
Confidence            344567788889999999887668888998874322211 1111110   0001111 11112233 6677888899887


Q ss_pred             EE-EcCCcc-cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287          308 LI-DMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       308 vw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      -| |.+.+. ..-.+++.++-..            .++..+.-..+.+-+++-+. |++.++.... .+++-.-+..+. 
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~-  359 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQA-  359 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcC-
Confidence            76 554432 1111222222111            22332222223344444444 7777766553 332221111111 


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                                     ..-+++||.+.+|++-. .|.++++.+++...
T Consensus       360 ---------------~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         360 ---------------PQLVAMSPNQAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             ---------------cceeeeCcccchheeec-CCceEEEEecCCCC
Confidence                           11578999999988654 57899999987633

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.56  E-value=15  Score=34.65  Aligned_cols=112  Identities=9%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             CeEEEEeccCCCEEEEEc------------CC-eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287          234 HINSISNNSDGETFISAD------------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  300 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~------------d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  300 (513)
                      ....|+|.++|+++++..            .+ .|.+++-..+.......    ..+.......+.+++.+++  +++ +
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV-~   87 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV-A   87 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-e
Confidence            467899999999888741            12 67777654332211100    0112223346788998886  444 3


Q ss_pred             eCCCcEEEEEcCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          301 SSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      +.....++.|........ +....++.....     -..+......+.|.|||.+.++
T Consensus        88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             CCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence            444333343443211111 111111111100     0001234778999999987775

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.45  E-value=14  Score=33.99  Aligned_cols=119  Identities=13%  Similarity=0.166  Sum_probs=61.6

Q ss_pred             CCeEEEEecc-CCCEEEEEcCCe------EEEEEcCCCc---ceeeecccCc------cccccccCCeEEEEEeCCCCeE
Q 010287          233 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKP------ANMEDLTEVITSAEFHPTHCNM  296 (513)
Q Consensus       233 ~~v~~~~~~~-~~~~l~s~~d~~------i~vwd~~~~~---~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~  296 (513)
                      +.+..+.+.+ ++.+++.++++.      +...++....   ....+....+      ..+........+|++.+++ .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            5578899985 566666667666      6555555311   1111111000      0111111234578887776 77


Q ss_pred             EEEEeCC------CcEEEEEcCCcccccccceeeccccCCCCcc---ccccccccEEEEEEeecCCEEEE
Q 010287          297 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS---FFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       297 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      +++.-.+      ..|..++.. +...    ..+..+.......   .-......+.+++++|+|+.|++
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            7766556      678888865 5542    2221111100000   01123357899999999996554

>PRK13684 Ycf48-like protein; Provisional

Probab=90.18  E-value=15  Score=33.92  Aligned_cols=106  Identities=17%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccc
Q 010287          400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALD  476 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~  476 (513)
                      +..+.+.|++.+++++. .|.+..- ...+.. -..........+..+.+.++++.++.+ ..|.+++  .++...+...
T Consensus       175 ~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        175 VRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             EEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccc
Confidence            34788899987776655 4544321 112211 111222345677888999998877765 4677766  2333333211


Q ss_pred             cCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287          477 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLY  509 (513)
Q Consensus       477 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~  509 (513)
                      ... ...-+..+.++++.|++..++++..+.++
T Consensus       252 ~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G~v~  283 (334)
T PRK13684        252 IIP-EITNGYGYLDLAYRTPGEIWAGGGNGTLL  283 (334)
T ss_pred             cCC-ccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence            100 01113457889999998877777665443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.18  E-value=15  Score=33.89  Aligned_cols=58  Identities=12%  Similarity=0.032  Sum_probs=37.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccc--e-eecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAES--T-TLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                      .|.++++.-..+.|....+.......  . .+......+..+++.|||.++++-+.+|.|.
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            34466665566788887876543322  1 2233444788999999999988877777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.89  E-value=24  Score=35.63  Aligned_cols=68  Identities=19%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      .+..+.|+.+..+|+...+|++++|++-.......-+     -.+.....|..+.+..+|   ++.-..+|.+.+-
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i  152 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRFFHNG---VAVLTVSGQVILI  152 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEEecCc---eEEEecCCcEEEE
Confidence            5788999999888888899999999987322211000     112234456666666666   3444455655543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.55  E-value=4.3  Score=38.32  Aligned_cols=37  Identities=24%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCC
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD   69 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~   69 (513)
                      .....+.+++.+|++.+.|+.+.-|+|.++|+..+..
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            3456799999999999999998889999999877654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.43  E-value=2.1  Score=39.73  Aligned_cols=156  Identities=9%  Similarity=0.014  Sum_probs=87.9

Q ss_pred             ccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee-eEEEeCCCCEEEEEeCCC
Q 010287          341 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg  419 (513)
                      ..+..+-..|||+.+..-+..++.++++.+..-..+++......          +....|+ ++..-..|.-|..++.||
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg----------~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG----------DSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC----------chHHHHHHHHHHHhCceeEEEEcCCC
Confidence            56778889999999998777889999987521111211111000          0000011 112223455677888899


Q ss_pred             cEEEE-ecCCCCcc-c---eeecCCCCceeEEEEcCCCCceeeecCCCeEEEe--cCCCCCccccCCccccccCCeeEEE
Q 010287          420 LFRVF-GCSEGSAE-S---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLA  492 (513)
Q Consensus       420 ~i~vw-d~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~  492 (513)
                      .|.-| |...+... .   ..++-...++..+.-....+.+++-..+|.+...  ...++.    ..  ...-+.+..++
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~--~~~~~~~~~~~  364 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LF--ERAYQAPQLVA  364 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----eh--hhhhcCcceee
Confidence            99887 54433221 1   1122222344444444555666777777777661  111111    00  01134678899


Q ss_pred             EeCCCCEEEEEcCCcEEEEe
Q 010287          493 WHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       493 ~sp~~~~la~~~~~~~~i~~  512 (513)
                      +||.+.+|++-..+++.+|.
T Consensus       365 ~Sp~~~~Ll~e~~gki~~~~  384 (733)
T COG4590         365 MSPNQAYLLSEDQGKIRLAQ  384 (733)
T ss_pred             eCcccchheeecCCceEEEE
Confidence            99999999988888887764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.31  E-value=2.6  Score=36.07  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc-------cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      +..+++++++- .+|.+++||+.+.+..+.-..+.|. +.       .....|..+.++.+| .-+++- .+|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecc
Confidence            34467777765 8999999999987655443222221 11       355678899999887 556554 4578888886


Q ss_pred             CC
Q 010287          312 RQ  313 (513)
Q Consensus       312 ~~  313 (513)
                      .-
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.23  E-value=14  Score=32.26  Aligned_cols=113  Identities=15%  Similarity=0.084  Sum_probs=67.2

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287          283 VITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY  360 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~  360 (513)
                      ....+.|..++ .++-+.+.-|  .|+.+|+.+++...    ....+..           -.-..++...|.-+.++-.+
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~----~~~l~~~-----------~FgEGit~~~d~l~qLTWk~  109 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ----SVPLPPR-----------YFGEGITILGDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE----EEE-TTT-------------EEEEEEETTEEEEEESSS
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE----EEECCcc-----------ccceeEEEECCEEEEEEecC
Confidence            34578887777 8888888877  78899999987532    1111110           11233444433333334445


Q ss_pred             CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +...+||..+ -+.+.++......                +.++  .|++.|+.......|+++|..+.+
T Consensus       110 ~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  110 GTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             SEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             CeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCcccc
Confidence            8999999986 6677766554321                2566  466667766667789999988763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.10  E-value=20  Score=33.75  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCC
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR   68 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~   68 (513)
                      .+....++|.++.||+|.+.||+--.+.+|.+++....+
T Consensus        61 fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   61 FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            445567899999999999999999999999999975443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=10  Score=31.60  Aligned_cols=31  Identities=3%  Similarity=-0.127  Sum_probs=21.6

Q ss_pred             CCceEEEeec--CCeEEEEEccCceeeeeeccc
Q 010287          125 NSALYLLSTN--DKTIKLWKVQEKKVKKVFDWN  155 (513)
Q Consensus       125 ~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~  155 (513)
                      ++.++.+.+.  ...|++||+.+++......+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~   87 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA   87 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC
Confidence            4556666654  446999999999876655544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.66  E-value=20  Score=33.08  Aligned_cols=167  Identities=12%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCc------EEEEEcCCcccc-----cccceeeccccCCCCccccccccccEEEEEEee
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALC-----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                      +.+..+.+.|++ ..+++.+.+|.      +..+++......     ......+......    .+..-....-+|++.+
T Consensus        20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~----~~~~~~~D~Egi~~~~   94 (326)
T PF13449_consen   20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQ----PFPKNGLDPEGIAVPP   94 (326)
T ss_pred             CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCC----cCCcCCCChhHeEEec
Confidence            457888898765 55666677777      555555431100     0001111111100    0111112455778877


Q ss_pred             cCCEEEEEe-C------CeEEEEEccCCCCCeeeeeccccccccc---ccccccCCccceeeEEEeCCCCEEEEEeC---
Q 010287          351 NGRHILSRD-Y------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY---  417 (513)
Q Consensus       351 ~~~~l~~~~-~------~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---  417 (513)
                      ++.++++.. +      ..|..++..  ++....+..+.......   .....|..   .-+++++|||+.|+++.+   
T Consensus        95 ~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~l  169 (326)
T PF13449_consen   95 DGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESPL  169 (326)
T ss_pred             CCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECccc
Confidence            888777743 2      456666644  66666654333221111   12222333   338999999996665433   


Q ss_pred             --CC--c-------EEEE--ecCCCCcc----ceeecC-----CCCceeEEEEcCCCCceeee
Q 010287          418 --SN--L-------FRVF--GCSEGSAE----STTLEA-----SKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       418 --dg--~-------i~vw--d~~~~~~~----~~~~~~-----~~~~v~~~~~~~~~~~l~~~  458 (513)
                        |+  .       ++++  |..+....    ...+..     ....+..+.+-+++++|+.-
T Consensus       170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence              22  1       4454  54442111    122222     34567788999999877654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.58  E-value=10  Score=36.15  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=83.0

Q ss_pred             eecCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC--------CEEEEEeCC
Q 010287          349 ARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--------GRVATGSYS  418 (513)
Q Consensus       349 sp~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~d  418 (513)
                      ..+..+|+. |.. ..++-.|+.. ++.+..+..+...                 -+.|.|+.        +.|+ |-.+
T Consensus       476 ~~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlv-GlS~  536 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLV-GLSD  536 (776)
T ss_pred             cCCcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEE-eecc
Confidence            345566665 444 7788888886 8888888877754                 35566653        2344 4445


Q ss_pred             CcEEEEecCCCCccceeecCCCCcee----EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEe
Q 010287          419 NLFRVFGCSEGSAESTTLEASKNPMR----RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH  494 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  494 (513)
                      ..|.-.|++-.+..+... ....-+.    +........++|.+|..|.|+++..-...   -....-.....|..+..+
T Consensus       537 ~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvt  612 (776)
T COG5167         537 YSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVT  612 (776)
T ss_pred             cceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEee
Confidence            555555665443222111 1111111    22334566799999999999992211111   111122367899999999


Q ss_pred             CCCCEEEEEcCCcEEE
Q 010287          495 PSENSIACAASNSLYM  510 (513)
Q Consensus       495 p~~~~la~~~~~~~~i  510 (513)
                      .+|++|.+...+.+.+
T Consensus       613 a~Gk~ilaTCk~yllL  628 (776)
T COG5167         613 ANGKHILATCKNYLLL  628 (776)
T ss_pred             cCCcEEEEeecceEEE
Confidence            9999988777776654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.30  E-value=17  Score=31.86  Aligned_cols=186  Identities=12%  Similarity=0.071  Sum_probs=101.2

Q ss_pred             cCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          232 DYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      ..-...+.|..++.++-+.   ....|+.+|+.+++...+.      .+.. .-.-..++...+  .++...-.++...+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~------~l~~-~~FgEGit~~~d--~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV------PLPP-RYFGEGITILGD--KLYQLTWKEGTGFV  114 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE------E-TT-T--EEEEEEETT--EEEEEESSSSEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE------ECCc-cccceeEEEECC--EEEEEEecCCeEEE
Confidence            3445678887777777765   3668999999987644322      1221 112234555544  56777778999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      ||..+-+..    ..+.-.             +.=+.++  .|++.|+..+. ..++++|..+ .+....+.......  
T Consensus       115 yd~~tl~~~----~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~--  172 (264)
T PF05096_consen  115 YDPNTLKKI----GTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGR--  172 (264)
T ss_dssp             EETTTTEEE----EEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTE--
T ss_pred             EccccceEE----EEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCE--
Confidence            999876542    222211             1234455  56777776654 8999999875 66666665443221  


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-----------C----CCCceeEEEEcCCC
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-----------A----SKNPMRRQVQTPSR  452 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~  452 (513)
                              .+..+..+.+- +|...|-.-....|...|+.+|... ..+.           .    ...-.+.+++.|..
T Consensus       173 --------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~  242 (264)
T PF05096_consen  173 --------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET  242 (264)
T ss_dssp             --------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred             --------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence                    11112355665 5655554445566777777777322 1111           0    12346789997765


Q ss_pred             C-ceeee
Q 010287          453 P-SRPLG  458 (513)
Q Consensus       453 ~-~l~~~  458 (513)
                      + ++++|
T Consensus       243 ~~l~vTG  249 (264)
T PF05096_consen  243 DRLFVTG  249 (264)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            4 34444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.09  E-value=22  Score=32.89  Aligned_cols=26  Identities=23%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFE   63 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~   63 (513)
                      .-++|+|.|||+++++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3578999999987665 5699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.35  E-value=27  Score=33.23  Aligned_cols=58  Identities=16%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             CEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          245 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       245 ~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +-++.-  -||.+.+++-+.-  .+..      .+.. .--...+.|.+.. ..|++++.+..+.-|...
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~--~f~~------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESF--AFSR------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcE--EEEE------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence            344443  5999999987632  2211      1111 2223456777776 788999999999888754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=86.79  E-value=37  Score=34.17  Aligned_cols=57  Identities=9%  Similarity=0.162  Sum_probs=33.0

Q ss_pred             CCCEEEEEeCCCc-----EEEEecCCCCccce-eecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          408 DGGRVATGSYSNL-----FRVFGCSEGSAEST-TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++.+.+.|+.|+.     |..||+.+.+-... .+......+  -+..-+++..+.|+.|+.-.+
T Consensus       475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~--g~~~~~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV--GVVVLGGKLYAVGGFDGNNNL  537 (571)
T ss_pred             CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc--cEEEECCEEEEEecccCcccc
Confidence            5667778887763     67788887633321 122222221  123345677788888887766

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.56  E-value=6.4  Score=32.24  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=24.4

Q ss_pred             ceeeEEEeCCC------CEEEEEeCCCcEEEEecCC
Q 010287          399 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       399 ~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~~  428 (513)
                      .+.+++|||-|      -+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            35689999955      3788999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.55  E-value=19  Score=30.62  Aligned_cols=96  Identities=5%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             EEEEEEeecCCEEEEEeC--CeEEEEEccCC-C-----CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          343 ISDIKFARNGRHILSRDY--MTLKLWDINMD-S-----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                      -+.++|+.+.+.+..-+.  -+|.-||...+ +     +.+..++..+......     .+      .+++..+|++.++
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-----PD------Gm~ID~eG~L~Va  228 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-----PD------GMTIDTEGNLYVA  228 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-----CC------cceEccCCcEEEE
Confidence            456788888777766443  67777884321 2     1222222111110000     01      4566778888888


Q ss_pred             EeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          415 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       415 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                      .-..++|.-.|+.++ +++.+++.....+++++|--
T Consensus       229 ~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecC
Confidence            888899999999998 66678887788888998853

>PHA02713 hypothetical protein; Provisional

Probab=86.36  E-value=25  Score=35.35  Aligned_cols=22  Identities=18%  Similarity=0.173  Sum_probs=17.5

Q ss_pred             CCCEEEEEeCCC--cEEEEecCCC
Q 010287          408 DGGRVATGSYSN--LFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~dg--~i~vwd~~~~  429 (513)
                      ++++.++|+.++  .+..||+.+.
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccc
Confidence            778888999888  6777887766

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.19  E-value=32  Score=37.18  Aligned_cols=80  Identities=18%  Similarity=0.283  Sum_probs=53.0

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcc-----eeeec-------ccCc--cccc-cccCCeEEEEEeCCCCeEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQ-----SFNIV-------DVKP--ANME-DLTEVITSAEFHPTHCNML  297 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~-----~~~~~-------~~~~--~~~~-~~~~~i~~~~~~~~~~~~l  297 (513)
                      ..|.|+....+|+.|++|.||.|+-.-......     +.++-       .+-|  ..+. .+.++|..++....- .++
T Consensus       179 ~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~Il  257 (1311)
T KOG1900|consen  179 VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NIL  257 (1311)
T ss_pred             ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-cee
Confidence            348899988899999999777444222221110     10000       0001  1233 567899999998876 899


Q ss_pred             EEEeCCCcEEEEEcCC
Q 010287          298 AYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       298 ~~~~~dg~i~vwd~~~  313 (513)
                      .+-++.|.|.+||+..
T Consensus       258 Y~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  258 YVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeccCceEEEEEccC
Confidence            9999999999999976

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.92  E-value=34  Score=32.97  Aligned_cols=59  Identities=10%  Similarity=0.088  Sum_probs=37.8

Q ss_pred             CCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC
Q 010287          233 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT  292 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  292 (513)
                      ...+.|+|.|++++|++-. .|.|++++..+.... .+..+..............|+++|+
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence            4478999999999888875 699999986543321 1111110001113566899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.54  E-value=11  Score=30.90  Aligned_cols=33  Identities=15%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             ccceeEEEeecC----CCceEEEeecCCeEEEEEccC
Q 010287          113 EKINKIRWCQSA----NSALYLLSTNDKTIKLWKVQE  145 (513)
Q Consensus       113 ~~i~~i~~~~~~----~~~~l~s~s~d~~i~vw~~~~  145 (513)
                      ..|.+++|+|..    .+.+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999832    245677779999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=85.15  E-value=25  Score=30.76  Aligned_cols=185  Identities=14%  Similarity=0.041  Sum_probs=97.0

Q ss_pred             eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      -..+...||+..-++-....|.-.|.++.+.  +.+.   ...+.-........|.+.| ++-+++.. |.---.|..++
T Consensus       106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev--t~f~---lp~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrLdPa~~  178 (353)
T COG4257         106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEV--TRFP---LPLEHADANLETAVFDPWG-NLWFTGQI-GAYGRLDPARN  178 (353)
T ss_pred             CceEEECCCCCeeEecCcceeEEecCcccce--EEee---cccccCCCcccceeeCCCc-cEEEeecc-ccceecCcccC
Confidence            4456667777666653222455555543321  1111   1222234567788899998 77777653 21111121111


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE  393 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      .     +++|..+..           ..-..|+..|+|+.-++.-. ..|-..|... + .-..+..........     
T Consensus       179 ~-----i~vfpaPqG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~gs-----  235 (353)
T COG4257         179 V-----ISVFPAPQG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKAGS-----  235 (353)
T ss_pred             c-----eeeeccCCC-----------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCcccccc-----
Confidence            1     333333322           24567888999998877432 4455555543 2 222232222211111     


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  456 (513)
                             ..+.-+|.|+.-++....+.+.-||.....-....+.+....-.++.+...++.-.
T Consensus       236 -------Rriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~  291 (353)
T COG4257         236 -------RRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL  291 (353)
T ss_pred             -------cccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence                   14556788888888778888999988766444455555554445555554444333

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.58  E-value=20  Score=34.31  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      ..+.|++.++..|-|++||.- +......+.+-...+..+..+.+|++++..+..
T Consensus       571 TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         571 TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            345699999999999999965 323346677778889999999999987665544

>PHA02713 hypothetical protein; Provisional

Probab=84.08  E-value=22  Score=35.63  Aligned_cols=23  Identities=0%  Similarity=0.023  Sum_probs=17.6

Q ss_pred             CCCeEEEEEeCCC--cEEEEEcCCcc
Q 010287          292 THCNMLAYSSSKG--SIRLIDMRQSA  315 (513)
Q Consensus       292 ~~~~~l~~~~~dg--~i~vwd~~~~~  315 (513)
                      ++ +++++|+.++  .+..||..+.+
T Consensus       512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DN-TIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CC-EEEEEeeecceeehhhcCccccc
Confidence            44 8899999988  67777777654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.72  E-value=3.3  Score=23.68  Aligned_cols=20  Identities=20%  Similarity=0.199  Sum_probs=15.6

Q ss_pred             cCCeeEEEEeCCCCEEEEEc
Q 010287          485 SMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       485 ~~~i~~~~~sp~~~~la~~~  504 (513)
                      .......+|||||+.|+-.+
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEE
T ss_pred             CccccCEEEecCCCEEEEEe
Confidence            55678899999999999555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.43  E-value=0.25  Score=45.98  Aligned_cols=138  Identities=9%  Similarity=0.062  Sum_probs=87.2

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE-EeC
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY  360 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~  360 (513)
                      .......|-|.+ .-++.++.+..+..||- .++......                 ..+....++|..++..++. +..
T Consensus        35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~-agq~~le~n-----------------~tg~aldm~wDkegdvlavlAek   95 (615)
T KOG2247|consen   35 VGPIIHRWRPEG-HNLAVACANTIVIYYDK-AGQVILELN-----------------PTGKALDMAWDKEGDVLAVLAEK   95 (615)
T ss_pred             cccceeeEecCC-CceehhhhhhHHHhhhh-hcceecccC-----------------CchhHhhhhhccccchhhhhhhc
Confidence            334456678887 44788888899999984 333211100                 0134566788887776665 333


Q ss_pred             -CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287          361 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       361 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                       +.+.+||+.++...--...+.... +               -+.|++....++.+...|.+.|++..+. ........|
T Consensus        96 ~~piylwd~n~eytqqLE~gg~~s~-s---------------ll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh  158 (615)
T KOG2247|consen   96 TGPIYLWDVNSEYTQQLESGGTSSK-S---------------LLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKH  158 (615)
T ss_pred             CCCeeechhhhhhHHHHhccCcchH-H---------------HHhhccCCccccccccccceEEEeccch-hhhhhhccc
Confidence             999999998521111111111110 0               2578988889999999999999998765 332344448


Q ss_pred             CCceeEEEEcCCCCce
Q 010287          440 KNPMRRQVQTPSRPSR  455 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l  455 (513)
                      ...+.++++.+.+..+
T Consensus       159 ~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  159 QRRGTQIAVTLEDYVI  174 (615)
T ss_pred             ccceeEEEecccceee
Confidence            8888888888765543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=80.97  E-value=42  Score=30.24  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      ....++++++| .++++--..+.|..|+..+
T Consensus       187 ~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  187 QSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred             CCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence            45678889988 8999999999999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.21  E-value=83  Score=33.18  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             cCCeEEEEec---c----CCCEEEEEcCCeEEEEEcCCCcc------eeeecccCc-cccc---cccCCeEEEEEeCCCC
Q 010287          232 DYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTHC  294 (513)
Q Consensus       232 ~~~v~~~~~~---~----~~~~l~s~~d~~i~vwd~~~~~~------~~~~~~~~~-~~~~---~~~~~i~~~~~~~~~~  294 (513)
                      ..+|..|+|.   .    ..++|++=....+.|+...-.+.      ....++..| ..+.   ....+..+++|+|...
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~  158 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ  158 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence            3567778877   2    22455554677777777321111      111111111 1111   1245677999999887


Q ss_pred             eEEEEEeCCCcEEEEEcCCcccccc-cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccC
Q 010287          295 NMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  370 (513)
Q Consensus       295 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~  370 (513)
                      ..||.....|...|||+........ ..+........  ...-.........|.|.++...|+.++...+.++|++.
T Consensus       159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gs--i~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~  233 (765)
T PF10214_consen  159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGS--IIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES  233 (765)
T ss_pred             ceEEEEeccCcEEEEEeccccccCCcceeeccCCCcc--ccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence            8999999999999999922211111 11111111000  00001112456678999998999999888999999985

These proteins are found in fungi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-127

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/511 (48%), Positives = 321/511 (62%), Gaps = 76/511 (14%)
Query: 4   GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
           GGG+       ++W FSQV G     ++V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5   GGGND------IQWCFSQVKG--AVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQ 56
Query: 64  RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
                    Q ++ ++  +S     E+   + FQSHEPEFDYLKSLEIEEKINKIRW   
Sbjct: 57  ---------QEQENKIQSHSRG---EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
            N+A +LLSTNDKTI               W +        G                  
Sbjct: 105 KNAAQFLLSTNDKTIKL-------------WKISERDKRPEG------------------ 133
Query: 184 GCGERNFGCASNDSSF-PPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 242
                 +     D  +  P  V++LR+PV    +  + A  RRI+A+AH YHINSIS NS
Sbjct: 134 ------YNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187
Query: 243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 302
           D ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSS
Sbjct: 188 DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247
Query: 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 362
           KG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY++
Sbjct: 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLS 307
Query: 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422
           +K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR
Sbjct: 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367
Query: 423 VFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGN 480
           +F     +    TLEAS+ N   R V                 R+V  +     D  + +
Sbjct: 368 MF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVD 411
Query: 481 AFDFSMKLLHLAWHPSENSIACAASNSLYMY 511
           + DF+ K+LH AWHP EN IA A +N+LY++
Sbjct: 412 SLDFNKKILHTAWHPKENIIAVATTNNLYIF 442

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.0
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.91
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.82
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.72
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.56
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.54
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.45
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.28
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.22
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.9
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.34
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.2
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.17
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.02
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.99
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.5
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.42
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.28
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.01
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.23
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.04
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.55
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.02
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.68
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.19
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.2
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	87.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.99
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.92
3ott_A	758	Two-component system sensor histidine kinase; beta	85.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	85.38
3ott_A	758	Two-component system sensor histidine kinase; beta	84.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.43
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.26
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	82.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	81.55

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-49  Score=383.96  Aligned_cols=440  Identities=55%  Similarity=0.913  Sum_probs=324.1

Q ss_pred             cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287           10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (513)
Q Consensus        10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (513)
                      +...+..|++.|+|++.  .+++.|.+.|++++|+|+|++||+|+.||.|+||++.+.+...            .....+
T Consensus         5 ~~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~   70 (447)
T 3dw8_B            5 GGGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGE   70 (447)
T ss_dssp             ---CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCC
T ss_pred             CCCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccc
Confidence            34678999999999974  4568899999999999999999999999999999988765210            011235


Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.+...+.+|.+++.++.++.++..|++++|+|..+...|++++.|++|++||+.++...... .....           
T Consensus        71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~-----------  138 (447)
T 3dw8_B           71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE-----------  138 (447)
T ss_dssp             EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC------------
T ss_pred             eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC-----------
Confidence            566778899999999999999999999999977443368999999999999999876643211 00000           


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                 .+|..             ........+.+..+...+......+.+.+..+|...|.+++|+|++++|++
T Consensus       139 -----------~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  194 (447)
T 3dw8_B          139 -----------EDGRY-------------RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS  194 (447)
T ss_dssp             -------------------------------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred             -----------ccccc-------------cCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence                       00100             000111112222222222222334445556789999999999999999999


Q ss_pred             EcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          250 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       250 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                      |.|+.|++||+++......++..++..+.+|...|.+++|+|+++.+|++++.||.|++||++++.........+..+..
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (447)
T 3dw8_B          195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED  274 (447)
T ss_dssp             ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred             eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence            99999999999966666665555666678999999999999997689999999999999999998765555667777665


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      +.....+.+|...|.+++|+|++++|++++++.|++||++..++++..+..|......++..+..+++++++.++|+|++
T Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~  354 (447)
T 3dw8_B          275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD  354 (447)
T ss_dssp             ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred             ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence            55555667777899999999999999998779999999986578888999988776666677777777777789999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL  489 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~  489 (513)
                      ++|++|+.||.|++||+.++..  ..++.+..+.......+.......+..            ..........++...|.
T Consensus       355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKR------------KKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCC------------CTTCEEGGGCCTTSCCC
T ss_pred             CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCc------------ccccccccccccCCcee
Confidence            9999999999999999997733  356666655543333333322222211            11122233445788999


Q ss_pred             EEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          490 HLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       490 ~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      +++|||++++||+++.+++++|++
T Consensus       421 ~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             EEEECSSSSEEEEECSSCEEEEEC
T ss_pred             EEEECCCCCEEEEEecceeeeecc
Confidence            999999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.6e-48  Score=385.21  Aligned_cols=418  Identities=14%  Similarity=0.148  Sum_probs=296.1

Q ss_pred             cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (513)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (513)
                      ...|++..  + .....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..                     ..
T Consensus        41 v~l~~~~~--~-~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------------~~   96 (611)
T 1nr0_A           41 VYTVPVGS--L-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LK   96 (611)
T ss_dssp             EEEEETTC--S-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EE
T ss_pred             EEEecCCC--c-ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------------ee
Confidence            34566643  1 122345689999999999999999999999999999998654321                     33


Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecC----CeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      ..+.+|.            ..|.+++|+|  ++.+|++++.+    +.|++||.  ++....+.  .+.           
T Consensus        97 ~~~~~~~------------~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~--gh~-----------  147 (611)
T 1nr0_A           97 TTIPVFS------------GPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT--GQA-----------  147 (611)
T ss_dssp             EEEECSS------------SCEEEEEECT--TSCEEEEEECCSSCSEEEEETTT--CCBCBCCC--CCS-----------
T ss_pred             EeecccC------------CceEEEEECC--CCCEEEEEECCCCceeEEEEeeC--CCCcceec--CCC-----------
Confidence            4567787            8899999955  78899988765    47888874  33222211  111           


Q ss_pred             CcccccCceeccCCCc-cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          170 SHVSAIPKSYMANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                        .....++|+|++.. +            ++++.++.+++|+....+      +.. .+.+|...|.+++|+|++++|+
T Consensus       148 --~~v~~v~f~p~~~~~l------------~s~s~D~~v~lwd~~~~~------~~~-~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          148 --RAMNSVDFKPSRPFRI------------ISGSDDNTVAIFEGPPFK------FKS-TFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             --SCEEEEEECSSSSCEE------------EEEETTSCEEEEETTTBE------EEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred             --CCceEEEECCCCCeEE------------EEEeCCCeEEEEECCCCe------Eee-eeccccCceEEEEECCCCCEEE
Confidence              22337788998863 4            788899999999975422      222 2578999999999999999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-------
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------  320 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------  320 (513)
                      ++ .|++|++||+.+++....+.. ......+|...|.+++|+|++ .+|++++.|+.|++||+++++.....       
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             EEECCCcEEEEECCCCcEeeeecc-ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            98 799999999987664432210 001123799999999999999 99999999999999999887642210       


Q ss_pred             ---------------------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287          321 ---------------------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       321 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~  378 (513)
                                           ++.++.. .......+.+|...|.+++|+|++++|++++. +.|++||+.+ +.....+
T Consensus       285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~  362 (611)
T 1nr0_A          285 DQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVF  362 (611)
T ss_dssp             GCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECS
T ss_pred             ceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cceeeec
Confidence                                 0001100 00112235689999999999999999999875 9999999985 4333222


Q ss_pred             -ecccccccccc-------------------------------------------cccccC-------------------
Q 010287          379 -QVHEHLRPKLC-------------------------------------------DLYEND-------------------  395 (513)
Q Consensus       379 -~~~~~~~~~~~-------------------------------------------~~~~~~-------------------  395 (513)
                       ..|...+..+.                                           .+....                   
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence             11111000000                                           000000                   


Q ss_pred             ----CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287          396 ----SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD  471 (513)
Q Consensus       396 ----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~  471 (513)
                          .-..+.+++|+|||++|++|+.|+.|++||+.++........+|...|.+++|+|++++|++++.|+.|++   |+
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~---w~  519 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP---YS  519 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE---EE
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEE---EE
Confidence                01235689999999999999999999999998653222223689999999999999999999999999999   33


Q ss_pred             CCc-cccCCc-cc-cccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          472 NSA-LDANGN-AF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       472 ~~~-~~~~~~-~~-~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ... .+.... .. .|...|.+++|+||+++||+++ ++.+++|+
T Consensus       520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            221 111111 22 3899999999999999999888 77899996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-45  Score=366.68  Aligned_cols=397  Identities=14%  Similarity=0.165  Sum_probs=290.7

Q ss_pred             ccccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++++|+|++. +|++|+.|++|++||..+.+                       +...+.+|.        
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~l~~H~--------  190 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----------------------FKSTFGEHT--------  190 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----------------------EEEEECCCS--------
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----------------------Eeeeecccc--------
Confidence            4568999999999999987 69999999999999965433                       445678898        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|++++|+|  ++.+|++++.|++|++||+.+++........... ..       ........++|+|+|+.+  
T Consensus       191 ----~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~-~~-------~h~~~V~~v~~spdg~~l--  254 (611)
T 1nr0_A          191 ----KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK-NV-------AHSGSVFGLTWSPDGTKI--  254 (611)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS-SC-------SSSSCEEEEEECTTSSEE--
T ss_pred             ----CceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc-cc-------ccCCCEEEEEECCCCCEE--
Confidence                8899999965  7889999999999999999988765543210000 00       001223478899999987  


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCccccc------------------------------------ceeeEeecccc
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVA------------------------------------GCRRIYAHAHD  232 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------------~~~~~~~~~h~  232 (513)
                                ++++.++.+++||+...+.....                                    ......+.+|.
T Consensus       255 ----------~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~  324 (611)
T 1nr0_A          255 ----------ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN  324 (611)
T ss_dssp             ----------EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred             ----------EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence                      88889999999998654322110                                    00112346899


Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..|.+++|+|++++|+++ .|++|++||+.++.....       ...+|...|.+++|++++  .+++++.|+.+++|++
T Consensus       325 ~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~-------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          325 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECS
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee-------cccCCcceEEEEEECCCC--cEEEEEcCCceEEeec
Confidence            999999999999999998 799999999987654321       125688999999999875  6889999999999998


Q ss_pred             CCcccccccc---------eeeccccCC---------------CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEE
Q 010287          312 RQSALCDTHS---------KLFEEQEAP---------------GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLW  366 (513)
Q Consensus       312 ~~~~~~~~~~---------~~~~~~~~~---------------~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iw  366 (513)
                      ..+.......         ..+....+.               ........|...+.+++|+|||++|++|+. +.|++|
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw  475 (611)
T 1nr0_A          396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  475 (611)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence            7654211000         000000000               000001125567899999999999999885 999999


Q ss_pred             EccCCCCC--eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccce--eecCCCCc
Q 010287          367 DINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST--TLEASKNP  442 (513)
Q Consensus       367 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~  442 (513)
                      |+.. +..  +.. ..|...               |++++|+|||++|++++.|+.|++|++.+..+...  .+..|...
T Consensus       476 d~~~-~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~  538 (611)
T 1nr0_A          476 KLSG-ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  538 (611)
T ss_dssp             EEET-TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             EccC-Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc
Confidence            9984 322  122 344443               56999999999999999999999999987323333  24459999


Q ss_pred             eeEEEEcCCCCceeeecCCCeEEEecCCCCCccc-cC-Cccccc-cCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD-AN-GNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~-~~~~~~-~~~i~~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      |.+++|+|++++||+|+.|+.|++   |+..... .. .....| ...|.+++|+|+++ |++++ ++.+++|+.
T Consensus       539 V~~v~fspdg~~lasgs~D~~v~l---W~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          539 VACVSWSPDNVRLATGSLDNSVIV---WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEE---EETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             eeEEEECCCCCEEEEEECCCcEEE---EECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            999999999999999999999999   4433211 11 123357 78999999999998 77665 788999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-44  Score=360.92  Aligned_cols=359  Identities=18%  Similarity=0.282  Sum_probs=290.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ....|...|++++|+|++++|++++.|+.|++|+....                        ....+.+|.         
T Consensus       216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~~~---------  262 (577)
T 2ymu_A          216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------  262 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------------EEEEECCCS---------
T ss_pred             EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------------EEEEEecCC---------
Confidence            34578999999999999999999999999999995322                        234567787         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|++++|+|  ++..+++++.|+.|++|+..... ......+.               .....++++|++..+   
T Consensus       263 ---~~v~~v~~~~--d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h~---------------~~v~~~~~~~~~~~l---  318 (577)
T 2ymu_A          263 ---SSVNGVAFRP--DGQTIASASDDKTVKLWNRNGQL-LQTLTGHS---------------SSVWGVAFSPDGQTI---  318 (577)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-EEEECCCS---------------SCEEEEEECTTSSEE---
T ss_pred             ---CCEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCcE-EEEEecCC---------------CCeEEEEECCCCCEE---
Confidence               8899999955  78899999999999999976543 22222111               122357888999877   


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                               ++++.++.+++|++.....        ..+.+|...|.+++|+|++++|+++ .|+.|++||.. ++ ...
T Consensus       319 ---------~t~~~d~~i~~w~~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~-~~~  379 (577)
T 2ymu_A          319 ---------ASASDDKTVKLWNRNGQHL--------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQ  379 (577)
T ss_dssp             ---------EEEETTSCEEEEETTSCEE--------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CC-EEE
T ss_pred             ---------EEEeCCCeEEEEeCCCCee--------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CC-EEE
Confidence                     7788899999999754321        1246889999999999999999998 79999999965 33 222


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++.    ...            +.+|...|.+++|
T Consensus       380 -------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~----~~~------------~~~~~~~v~~~~~  434 (577)
T 2ymu_A          380 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQT------------LTGHSSSVWGVAF  434 (577)
T ss_dssp             -------EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCE----EEE------------EECCSSCEEEEEE
T ss_pred             -------EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCE----EEE------------ecCCCCCeEEEEE
Confidence                   457789999999999999 899999999999999953 332    222            3456688999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++++|++++. +.|++||..  ++.+..+.+|...               |++++|+|++++|++++.|+.|++||..
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNRN  497 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence            999999999875 999999975  6777888877765               5589999999999999999999999964


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN  506 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~  506 (513)
                       + +....+.+|..+|.+++|+|++++|++++.|+.|++   |+..+ +......+|...|++++|+||+++|++++ |+
T Consensus       498 -~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l---wd~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          498 -G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL---WNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             -S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE---ECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             -C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE---EeCCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence             3 556788999999999999999999999999999999   44321 23334557999999999999999999887 66


Q ss_pred             cEEEEe
Q 010287          507 SLYMYY  512 (513)
Q Consensus       507 ~~~i~~  512 (513)
                      .+++|+
T Consensus       572 ~i~~Wd  577 (577)
T 2ymu_A          572 TVKLWN  577 (577)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            788985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.6e-44  Score=356.94  Aligned_cols=386  Identities=17%  Similarity=0.266  Sum_probs=282.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|++.|+|++|||||++||+|+.|+.|+|||.. ++                       ....+.+|.         
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-----------------------~~~~l~gh~---------   57 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----------------------LLQTLTGHS---------   57 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-----------------------EEEEEECCS---------
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-----------------------EEEEEeCCC---------
Confidence            356899999999999999999999999999999953 22                       335678898         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCC---------CcccCCCCccc-----------
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP---------EKAAGNGPIFG-----------  169 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-----------  169 (513)
                         ..|++++|+|  ++++|++++.|++|++||+.. +.......+..+         +..++.+....           
T Consensus        58 ---~~V~~l~fsp--dg~~las~~~d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~  131 (577)
T 2ymu_A           58 ---SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL  131 (577)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred             ---CCEEEEEECC--CCCEEEEEeCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce
Confidence               8899999955  888999999999999999754 333322221111         00000000000           


Q ss_pred             ------CcccccCceeccCCCccccc-----------------------------cCCCCCCCCcCCCCCCceeceeecc
Q 010287          170 ------SHVSAIPKSYMANGGCGERN-----------------------------FGCASNDSSFPPGGVSSLRLPVVTS  214 (513)
Q Consensus       170 ------~~~~~~~~~~~~~g~~~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~~~~~~  214 (513)
                            .........++|++..+...                             .......+.++++.++.+++|+...
T Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~  211 (577)
T 2ymu_A          132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG  211 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             eeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC
Confidence                  00000011222222211100                             0011223445667788888887532


Q ss_pred             CCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC
Q 010287          215 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH  293 (513)
Q Consensus       215 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  293 (513)
                             .... .+.+|...|.+++|+|++++|+++ .|+.|++||.. ++ ...       .+.+|...|.+++|+|++
T Consensus       212 -------~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~-~~~-------~~~~~~~~v~~v~~~~d~  274 (577)
T 2ymu_A          212 -------QLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQ-------TLTGHSSSVNGVAFRPDG  274 (577)
T ss_dssp             -------CEEE-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SC-EEE-------EECCCSSCEEEEEECTTS
T ss_pred             -------cEEE-EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-EEE-------EEecCCCCEEEEEEcCCC
Confidence                   1122 246899999999999999999998 79999999975 22 222       457899999999999998


Q ss_pred             CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC
Q 010287          294 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS  372 (513)
Q Consensus       294 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~  372 (513)
                       ..+++++.|+.|++||... +.    ...            +.+|...|.+++|+|++++|++++. +.|++||+.  +
T Consensus       275 -~~l~~~~~d~~i~~w~~~~-~~----~~~------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~--~  334 (577)
T 2ymu_A          275 -QTIASASDDKTVKLWNRNG-QL----LQT------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--G  334 (577)
T ss_dssp             -SEEEEEETTSCEEEEETTS-CE----EEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--S
T ss_pred             -CEEEEEeCCCEEEEEeCCC-cE----EEE------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--C
Confidence             8999999999999999643 22    222            3456688999999999999999875 999999986  5


Q ss_pred             CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287          373 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  452 (513)
                      ..+..+..|...               +.+++|+|++++|++++.|+.|++|+.. + .....+.+|..++.+++|+|++
T Consensus       335 ~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg  397 (577)
T 2ymu_A          335 QHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDG  397 (577)
T ss_dssp             CEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTS
T ss_pred             CeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCC
Confidence            566666666554               4589999999999999999999999965 3 4567888999999999999999


Q ss_pred             CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          453 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       453 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ++|++++.|+.|++   |+... +.......|...|++++|+||+++|++++ ++.+.+|+
T Consensus       398 ~~l~~~~~d~~v~~---~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~  454 (577)
T 2ymu_A          398 QTIASASDDKTVKL---WNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN  454 (577)
T ss_dssp             SCEEEEETTSEEEE---ECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCEEEE---EeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            99999999999999   33221 22233456899999999999999999887 55678875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-43  Score=336.23  Aligned_cols=282  Identities=17%  Similarity=0.255  Sum_probs=245.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.++|++++|+|++.+||+|+.||+|+|||+.+++.                       ...+.+|.         
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~---------  150 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------  150 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS---------
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC---------
Confidence            4568999999999999999999999999999999877663                       25678888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|.+++|+|  ++.+|++++.|++|++||+.++++...                                      
T Consensus       151 ---~~V~~v~~~~--~~~~l~sgs~D~~i~iwd~~~~~~~~~--------------------------------------  187 (410)
T 1vyh_C          151 ---DSVQDISFDH--SGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------  187 (410)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCCCEEETTSSCEEEC--------------------------------------
T ss_pred             ---CcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEE--------------------------------------
Confidence               8899999955  778999999999999999987654321                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|...|.+++|+|++++|++| .|++|++||++++.... 
T Consensus       188 --------------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-  228 (410)
T 1vyh_C          188 --------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-  228 (410)
T ss_dssp             --------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             --------------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence                                                  35788889999999999999998 79999999999766432 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|...|.++.++|++ .+|++++.|+.|++||++++..    ...            +.+|...|.+++|
T Consensus       229 -------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~----~~~------------~~~h~~~v~~~~~  284 (410)
T 1vyh_C          229 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAE------------LREHRHVVECISW  284 (410)
T ss_dssp             -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEE------------ECCCSSCEEEEEE
T ss_pred             -------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeE------------ecCCCceEEEEEE
Confidence                   457899999999999998 9999999999999999988764    222            3445678999999


Q ss_pred             eec--------------------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          349 ARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       349 sp~--------------------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      +|+                    +.+|++|+. +.|++||+++ +.++..+.+|...               |.+++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~~  348 (410)
T 1vyh_C          285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS  348 (410)
T ss_dssp             CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred             cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEcC
Confidence            996                    678999875 9999999996 8888888888765               45899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++.+|++|+.|+.|++
T Consensus       349 ~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          349 GGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             SSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            9999999999999999999876 455788999999999999999999999999999999

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-43  Score=323.74  Aligned_cols=284  Identities=14%  Similarity=0.219  Sum_probs=240.8

Q ss_pred             ccccccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287           30 EEVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      ...+|.+.|++++|+|+    +.+||+|+.|++|+||++.+...                     .....+.+|.     
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~-----   80 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ-----   80 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS-----
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC-----
Confidence            34579999999999985    67999999999999999876542                     1334578898     


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                             ..|.+++|+|  ++.++++++.|++|++||+.+++....                                  
T Consensus        81 -------~~v~~~~~~~--~~~~l~s~s~D~~i~lWd~~~~~~~~~----------------------------------  117 (321)
T 3ow8_A           81 -------LGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKS----------------------------------  117 (321)
T ss_dssp             -------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred             -------CCEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCEEEE----------------------------------
Confidence                   8899999955  777999999999999999998765432                                  


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                                +..|...+.+++|+|++++|+++ .++.|++|++++++
T Consensus       118 ------------------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A          118 ------------------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             ------------------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             ------------------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence                                                      23445567889999999999999 79999999999776


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      ...        .+..|...|.+++|+|++ ++|++++.||.|++||+++++.    +..+            .+|...|.
T Consensus       156 ~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~----~~~~------------~~h~~~v~  210 (321)
T 3ow8_A          156 KEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKL----LHTL------------EGHAMPIR  210 (321)
T ss_dssp             EEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEE------------CCCSSCCC
T ss_pred             eeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEE------------cccCCcee
Confidence            543        346678889999999999 9999999999999999988765    3333            44557899


Q ss_pred             EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      +++|+|++++|++++. +.|++||++. ......+.+|...               |++++|+|++++|++++.|+.|++
T Consensus       211 ~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~i  274 (321)
T 3ow8_A          211 SLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVKV  274 (321)
T ss_dssp             EEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEEE
Confidence            9999999999999885 9999999996 7778888888765               558999999999999999999999


Q ss_pred             EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ||+.++ .....+.+|...|..++|+|+++.|++++.|+.|++
T Consensus       275 wd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v  316 (321)
T 3ow8_A          275 WDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI  316 (321)
T ss_dssp             EETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             EeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            999987 455788899999999999999999999999999999

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-42  Score=316.53  Aligned_cols=285  Identities=17%  Similarity=0.203  Sum_probs=238.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+.+|.+.|++++|+|++++||+|+.||+|+|||+.++..                       ...+.+|.         
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------------~~~~~~~~---------   55 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------------VRSIQVTE---------   55 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS---------
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------------eEEeeccC---------
Confidence            4568999999999999999999999999999999876542                       24567777         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++++|++++.|++|++||+.+++....                                      
T Consensus        56 ---~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------   92 (304)
T 2ynn_A           56 ---TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------   92 (304)
T ss_dssp             ---SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred             ---CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEE--------------------------------------
Confidence               8899999976  677999999999999999988764332                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|...|.+++|+|++++|++| .|++|++||++++.....
T Consensus        93 --------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             --------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence                                                  35788899999999999999998 799999999987654433


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|...|.+++|+|+++.+|++|+.|+.|++||++++...    ..+           ..+|...+..+.|
T Consensus       135 -------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~-----------~~~~~~~v~~~~~  192 (304)
T 2ynn_A          135 -------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDY  192 (304)
T ss_dssp             -------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCEEEEEE
T ss_pred             -------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee-----------ccCCcCcEEEEEE
Confidence                   457899999999999954489999999999999999776532    111           1233467899999


Q ss_pred             ee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          349 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       349 sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      +|  ++.+|++++. +.|++||+++ ++.+..+.+|...               |..++|+|++++|++|+.||.|++||
T Consensus       193 ~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          193 YPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             CCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            87  7789999875 9999999996 8888889888765               45899999999999999999999999


Q ss_pred             cCCCCccceeecCCCCceeEEEEcCCCC--ceeeecCCCeEEE
Q 010287          426 CSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~  466 (513)
                      +.++ +....+..|...+.+++++|++.  ++++|+.||.+.+
T Consensus       257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          257 SSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (304)
T ss_dssp             TTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred             CCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence            9987 55578889999999999999876  5888888887666

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=321.50  Aligned_cols=295  Identities=15%  Similarity=0.118  Sum_probs=227.3

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ..|...|++++|+|||++|++++ |+++++||.......                       ....++.. ........+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~-----------------------~~~~~~~~-~~~~~~~~~   81 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK-----------------------DPCAAPNE-GFCSAGVQT   81 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES-----------------------SGGGTTCG-GGCSEEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec-----------------------cccccCCc-ceeeeeecc
Confidence            45778899999999999999888 678888874321100                       00000000 000111223


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      +..|.+++|+|  + ..|++++.||+|+|||+.+++......                                      
T Consensus        82 ~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~--------------------------------------  120 (344)
T 4gqb_B           82 EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSK--------------------------------------  120 (344)
T ss_dssp             SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------
T ss_pred             CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEee--------------------------------------
Confidence            37899999976  4 478999999999999998876433211                                      


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                        ....+|...|.+++|+|++++|++| .|++|++||+++++...   
T Consensus       121 ----------------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~---  163 (344)
T 4gqb_B          121 ----------------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---  163 (344)
T ss_dssp             ----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred             ----------------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---
Confidence                                              1135899999999999999999999 79999999999765443   


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           .+.+|...|.+++|+|++..+|++++.|+.|++||+++++..    ..+..          ..+...+.+++|+|
T Consensus       164 -----~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          164 -----SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC----------SAPGYLPTSLAWHP  224 (344)
T ss_dssp             -----EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--------------CCCEEEEEECS
T ss_pred             -----EEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----eeeec----------ceeeccceeeeecC
Confidence                 567899999999999998678999999999999999987652    22221          22335689999999


Q ss_pred             c-CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecC
Q 010287          351 N-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       351 ~-~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~  427 (513)
                      + +++|++|+. +.|++||+++ ++++..+.+|...               |++++|+|++ ++|++|+.|++|+|||+.
T Consensus       225 ~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          225 QQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             SCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             CCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            5 567888775 9999999997 8888999888876               5599999998 579999999999999998


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCc-eeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~  466 (513)
                      +++  ...+.+|...|.+++|+|+++. |++++.|+.|++
T Consensus       289 ~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          289 LSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             CCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            763  3567899999999999999875 679999999999

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-42  Score=318.77  Aligned_cols=287  Identities=14%  Similarity=0.200  Sum_probs=236.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++|++|+.||+|+|||..++..                       ...+..|.         
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~---------   97 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS---------   97 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC---------
Confidence            4668999999999999999999999999999999766553                       24456677         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.++++++.|+.|++|++.++.....                                      
T Consensus        98 ---~~v~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~~~~--------------------------------------  134 (340)
T 1got_B           98 ---SWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVR--------------------------------------  134 (340)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTCEEEEEETTTCSBSCE--------------------------------------
T ss_pred             ---ccEEEEEECC--CCCEEEEEeCCCeEEEEECccCCCcce--------------------------------------
Confidence               7899999965  778999999999999999876431100                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                        ....+.+|...|.++.|++++. ++++ .|++|++||++++.... 
T Consensus       135 ----------------------------------~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~-  178 (340)
T 1got_B          135 ----------------------------------VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT-  178 (340)
T ss_dssp             ----------------------------------EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-
T ss_pred             ----------------------------------eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-
Confidence                                              0011468889999999999876 5555 89999999998765443 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|...|.+++|+|++ .+|++++.|+.|++||++++..    ...            +.+|...|.+++|
T Consensus       179 -------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~----~~~------------~~~h~~~v~~v~~  234 (340)
T 1got_B          179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQT------------FTGHESDINAICF  234 (340)
T ss_dssp             -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEE------------ECCCSSCEEEEEE
T ss_pred             -------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCee----EEE------------EcCCcCCEEEEEE
Confidence                   457899999999999998 8999999999999999988764    223            3456688999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++.+|++|+. +.|++||++. ++.+..+..+..             ...|++++|+|++++|++|+.|+.|++||+.
T Consensus       235 ~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            999999999875 9999999986 555544432211             1125689999999999999999999999998


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++ .....+.+|..+|.++.|+|++.+|++|+.|+.|++
T Consensus       301 ~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i  338 (340)
T 1got_B          301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             TC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence            77 455788999999999999999999999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.7e-42  Score=321.73  Aligned_cols=301  Identities=16%  Similarity=0.186  Sum_probs=224.4

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecC------CCcEEEEEeeCCCCCCCccCccccccccccC
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSR   86 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   86 (513)
                      ....|++..       .....|...|++++|||||++||+|+.      |+.|++|+..++...                
T Consensus        27 ~~~~w~~p~-------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------   83 (357)
T 4g56_B           27 KGSAWGRPV-------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------   83 (357)
T ss_dssp             --------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------
T ss_pred             cccccCCCC-------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------
Confidence            345576543       123469999999999999999999997      678888886654421                


Q ss_pred             CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287           87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (513)
Q Consensus        87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                         ..+.....+|.            ..|.+++|+|  ++ .+++++.||+|+|||+.+++......             
T Consensus        84 ---~~~~~~~~~~~------------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~-------------  132 (357)
T 4g56_B           84 ---ESLCTAGVQTE------------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK-------------  132 (357)
T ss_dssp             ---GGGCSEEEECS------------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC-------------
T ss_pred             ---eeEecccCCCC------------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe-------------
Confidence               11112234455            7899999976  54 57788999999999998875332211             


Q ss_pred             cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  246 (513)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  246 (513)
                                                                                 ....+|...|.+++|+|++++
T Consensus       133 -----------------------------------------------------------~~~~~h~~~V~~v~~spdg~~  153 (357)
T 4g56_B          133 -----------------------------------------------------------FAKYEHDDIVKTLSVFSDGTQ  153 (357)
T ss_dssp             -----------------------------------------------------------EEECCCSSCEEEEEECSSSSE
T ss_pred             -----------------------------------------------------------eccCCCCCCEEEEEECCCCCE
Confidence                                                                       013578899999999999999


Q ss_pred             EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      |++| .|+.|++||+++++...        .+.+|...|++++|+|++..++++++.||.|++||+++++...    .+.
T Consensus       154 l~sgs~dg~v~iwd~~~~~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~  221 (357)
T 4g56_B          154 AVSGGKDFSVKVWDLSQKAVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RID  221 (357)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCC
T ss_pred             EEEEeCCCeEEEEECCCCcEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eee
Confidence            9998 79999999999765443        4578999999999999986789999999999999998876522    111


Q ss_pred             cccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                                ...+...+.+++|+|++ .+|++|+. +.|++||+++ ++.+..+.+|...               |+++
T Consensus       222 ----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l  275 (357)
T 4g56_B          222 ----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGL  275 (357)
T ss_dssp             ----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEE
T ss_pred             ----------eccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEE
Confidence                      12344679999999974 67778775 9999999996 7888888877765               5599


Q ss_pred             EEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC-CCCceeeecCCCeEEE
Q 010287          404 CLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR  466 (513)
Q Consensus       404 ~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~  466 (513)
                      +|+|++ ++|++|+.|+.|+|||++++ +. ....+|..+|++++|+| ++++|++++.|+.|++
T Consensus       276 ~~sp~~~~~lasgs~D~~i~iwd~~~~-~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCTVAVLDADFS-EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTSC-EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEECCCC-cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            999987 57999999999999999977 33 34458999999999998 7899999999999999

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-41  Score=310.66  Aligned_cols=290  Identities=16%  Similarity=0.217  Sum_probs=238.3

Q ss_pred             eccccCCCCcccccccccccccceeEEEeec--CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      ...+.+|+            +.|.+++|+|.  .++.+|++|+.|++|++|++..+......                  
T Consensus        25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~------------------   74 (321)
T 3ow8_A           25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW------------------   74 (321)
T ss_dssp             EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE------------------
T ss_pred             eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee------------------
Confidence            34567888            99999999774  24678999999999999999776432211                  


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                              .+.+|...|.+++|++++.+++++
T Consensus        75 --------------------------------------------------------~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           75 --------------------------------------------------------SLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             --------------------------------------------------------EECCCSSCEEEEEECSSSSEEEEE
T ss_pred             --------------------------------------------------------eeccCCCCEEEEEECCCCCEEEEE
Confidence                                                                    146888999999999999999998


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                       .|++|++||+++++...        .+..|...+.+++|+|++ ++|++++.||.|++||++++..    ...+     
T Consensus        99 s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~----~~~~-----  160 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK----EYSL-----  160 (321)
T ss_dssp             ETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE----EEEE-----
T ss_pred             eCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce----eEEe-----
Confidence             79999999999766443        345677889999999999 9999999999999999988764    2222     


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                             ..|...+.+++|+|++++|++|+. +.|++||+++ ++.+..+.+|...               |.+++|+|+
T Consensus       161 -------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~spd  217 (321)
T 3ow8_A          161 -------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMP---------------IRSLTFSPD  217 (321)
T ss_dssp             -------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------CCEEEECTT
T ss_pred             -------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCc---------------eeEEEEcCC
Confidence                   234467999999999999999875 9999999996 7888888877765               458999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCe
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL  488 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i  488 (513)
                      +++|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++++|++++.|+.|++   |+............|...|
T Consensus       218 ~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i---wd~~~~~~~~~~~~h~~~v  293 (321)
T 3ow8_A          218 SQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV---WDVGTRTCVHTFFDHQDQV  293 (321)
T ss_dssp             SCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE---EETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE---EeCCCCEEEEEEcCCCCcE
Confidence            999999999999999999977 455788999999999999999999999999999999   4443323333445689999


Q ss_pred             eEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          489 LHLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       489 ~~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      .+++|+|++++|++++ ++.+.+|+.
T Consensus       294 ~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          294 WGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999999999999877 667889873

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-41  Score=321.77  Aligned_cols=277  Identities=16%  Similarity=0.224  Sum_probs=235.7

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|++++|+|  ++.+|++++.|++|++||+.+++....                                         
T Consensus       109 ~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~-----------------------------------------  145 (410)
T 1vyh_C          109 SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT-----------------------------------------  145 (410)
T ss_dssp             SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE-----------------------------------------
T ss_pred             CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence            8999999966  777999999999999999988753321                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|...|.+++|+|++++|++| .|++|++||+.+.+...    
T Consensus       146 -----------------------------------l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~----  186 (410)
T 1vyh_C          146 -----------------------------------LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR----  186 (410)
T ss_dssp             -----------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE----
T ss_pred             -----------------------------------EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----
Confidence                                               35788899999999999999998 79999999998655432    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.+++|+|++ .+|++++.|+.|++||++++..    +..            +.+|...|.++.++|+
T Consensus       187 ----~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~----~~~------------~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          187 ----TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC----VKT------------FTGHREWVRMVRPNQD  245 (410)
T ss_dssp             ----CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE----EEE------------EECCSSCEEEEEECTT
T ss_pred             ----EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEE------------EeCCCccEEEEEECCC
Confidence                567899999999999998 8999999999999999998765    333            3455678999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC--------------------CC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------------------GG  410 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~  410 (513)
                      +.+|++|+. +.|++||+.+ +.....+..|...               |.+++|+|+                    +.
T Consensus       246 g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  309 (410)
T 1vyh_C          246 GTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPESSYSSISEATGSETKKSGKPGP  309 (410)
T ss_dssp             SSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             CCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCcccccchhhhccccccccCCCCC
Confidence            999999875 9999999986 7777788777765               458889886                    67


Q ss_pred             EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeE
Q 010287          411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLH  490 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  490 (513)
                      +|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++++|++|+.|+.|++   |+............|...|++
T Consensus       310 ~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v---wd~~~~~~~~~~~~h~~~v~~  385 (410)
T 1vyh_C          310 FLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV---WDYKNKRCMKTLNAHEHFVTS  385 (410)
T ss_dssp             EEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE---ECCTTSCCCEEEECCSSCEEE
T ss_pred             EEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCceEEEEcCCCCcEEE
Confidence            8999999999999999987 455788899999999999999999999999999999   444332333344568999999


Q ss_pred             EEEeCCCCEEEEEc-CCcEEEEe
Q 010287          491 LAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       491 ~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ++|+|++++||+++ ++.+.+|.
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEe
Confidence            99999999999888 77788886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-42  Score=353.64  Aligned_cols=392  Identities=12%  Similarity=0.090  Sum_probs=277.6

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+.+.                       ... ..|.          
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~-~~~~----------   58 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIK-LEDR----------   58 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEE-CSSC----------
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEE-cCCC----------
Confidence            458999999999999999999999999999999654332                       111 2344          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|.+++|+|   +.+|++++.|++|++||+.++++.......                .....++|+|++..+    
T Consensus        59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~----------------~~V~~v~~sp~g~~l----  113 (902)
T 2oaj_A           59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP----------------GKITSIDTDASLDWM----  113 (902)
T ss_dssp             --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS----------------SCEEEEECCTTCSEE----
T ss_pred             --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC----------------CCEEEEEECCCCCEE----
Confidence              7899999976   458999999999999999988765544311                123377889999987    


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccc-ee--e-EeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCc
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAG-CR--R-IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~--~-~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                              +++..++.|++||+.......... ..  . ....+|...|.+++|+|+ +..+++| .|+.| +||+++++
T Consensus       114 --------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~  184 (902)
T 2oaj_A          114 --------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE  184 (902)
T ss_dssp             --------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred             --------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence                    888999999999997654310000 00  0 123678999999999996 4678888 79999 99998765


Q ss_pred             ceeeecccC-----c------cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc--------------
Q 010287          265 QSFNIVDVK-----P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------------  319 (513)
Q Consensus       265 ~~~~~~~~~-----~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------  319 (513)
                      ....+. ..     +      .....|...|.+++|+|++ .+|++++.||.|++||+++++....              
T Consensus       185 ~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~  262 (902)
T 2oaj_A          185 IKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD  262 (902)
T ss_dssp             EEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred             eEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence            433221 10     0      0123456789999999998 9999999999999999977543210              


Q ss_pred             ----------cce-------------------------------eec-cc------------------------------
Q 010287          320 ----------HSK-------------------------------LFE-EQ------------------------------  327 (513)
Q Consensus       320 ----------~~~-------------------------------~~~-~~------------------------------  327 (513)
                                .+.                               .+. ++                              
T Consensus       263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  342 (902)
T 2oaj_A          263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN  342 (902)
T ss_dssp             CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred             CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence                      000                               000 00                              


Q ss_pred             -------------------cCC---------CCc------------------cccccccccEEEEE--------------
Q 010287          328 -------------------EAP---------GTR------------------SFFTEIIASISDIK--------------  347 (513)
Q Consensus       328 -------------------~~~---------~~~------------------~~~~~~~~~v~~i~--------------  347 (513)
                                         .++         ...                  ..+..|...|++++              
T Consensus       343 ~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~  422 (902)
T 2oaj_A          343 VPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS  422 (902)
T ss_dssp             SCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHh
Confidence                               000         000                  00011223344444              


Q ss_pred             --------------------EeecCCEEEEEeC-CeEEEEEccCCCCCe--eeee---------cccccccccccccccC
Q 010287          348 --------------------FARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQ---------VHEHLRPKLCDLYEND  395 (513)
Q Consensus       348 --------------------~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~  395 (513)
                                          |+|++++|++|+. ++|++||+.. +...  ..+.         +|..            
T Consensus       423 ~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~------------  489 (902)
T 2oaj_A          423 AAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKEL------------  489 (902)
T ss_dssp             TTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSC------------
T ss_pred             cccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCC------------
Confidence                                4678899999875 9999999986 4321  1111         2222            


Q ss_pred             CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc--------------------------------------------
Q 010287          396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--------------------------------------------  431 (513)
Q Consensus       396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------------------------  431 (513)
                         .|++++|+||+++||+|+.||+|+||++.+++.                                            
T Consensus       490 ---~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  566 (902)
T 2oaj_A          490 ---AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM  566 (902)
T ss_dssp             ---CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred             ---ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence               266999999999999999999999999986521                                            


Q ss_pred             cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccC-----Cccc-cccCCeeEEEEe-----CCC---
Q 010287          432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-----GNAF-DFSMKLLHLAWH-----PSE---  497 (513)
Q Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~-~~~~~i~~~~~s-----p~~---  497 (513)
                      ...++.+|..+|.+++|+|+| +||+|+.|+.|++   |+.......     .... +|...|++++|+     |||   
T Consensus       567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l---wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~  642 (902)
T 2oaj_A          567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML---IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS  642 (902)
T ss_dssp             EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE---EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred             eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE---EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence            145678899999999999999 9999999999999   333221111     1222 688999999999     886   


Q ss_pred             CEEEEEc-CCcEEEEe
Q 010287          498 NSIACAA-SNSLYMYY  512 (513)
Q Consensus       498 ~~la~~~-~~~~~i~~  512 (513)
                      ++|++++ ++.+++|.
T Consensus       643 ~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          643 ILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEETTSEEEEEE
T ss_pred             eEEEEEecCCcEEEEE
Confidence            7899888 67788886

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.4e-41  Score=312.22  Aligned_cols=291  Identities=14%  Similarity=0.202  Sum_probs=236.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++||+|+.||+|+|||..++..                       ...+..|.         
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~---------  106 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC---------  106 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence            5668999999999999999999999999999999765542                       23345565         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++..+++++.|+.+++|++........                                      
T Consensus       107 ---~~v~~~~~sp--~g~~lasg~~d~~i~v~~~~~~~~~~~--------------------------------------  143 (354)
T 2pbi_B          107 ---TWVMACAYAP--SGCAIACGGLDNKCSVYPLTFDKNENM--------------------------------------  143 (354)
T ss_dssp             ---SCCCEEEECT--TSSEEEEESTTSEEEEEECCCCTTCCS--------------------------------------
T ss_pred             ---CCEEEEEECC--CCCEEEEeeCCCCEEEEEEeccccccc--------------------------------------
Confidence               7799999965  788999999999999999865321000                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                     . .....+.+|...|.+++|+|+++.|+++ .|++|++||+++++... 
T Consensus       144 -------------------------------~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-  190 (354)
T 2pbi_B          144 -------------------------------A-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-  190 (354)
T ss_dssp             -------------------------------G-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             -------------------------------c-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Confidence                                           0 0001135788999999999999999998 79999999999766443 


Q ss_pred             ecccCccccccccCCeEEEEEeCCC-CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                             .+.+|...|.+++|+|+. .++|++|+.||.|++||+++++.    ...+            .+|...|.+++
T Consensus       191 -------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~------------~~h~~~v~~v~  247 (354)
T 2pbi_B          191 -------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----VQAF------------ETHESDVNSVR  247 (354)
T ss_dssp             -------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----EEEE------------CCCSSCEEEEE
T ss_pred             -------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----EEEe------------cCCCCCeEEEE
Confidence                   457899999999998842 27999999999999999998765    3333            44557899999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |+|++.+|++++. ++|++||++. ...+..+..+..             ...+.+++|+|++++|++|+.|+.|++||+
T Consensus       248 ~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          248 YYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            9999999999875 9999999985 544444432221             112558999999999999999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++ .....+.+|..+|.+++|+|++++|++|+.|+.|++
T Consensus       314 ~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          314 LKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV  352 (354)
T ss_dssp             TTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence            877 445788899999999999999999999999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.7e-41  Score=305.56  Aligned_cols=287  Identities=17%  Similarity=0.199  Sum_probs=234.2

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ....|.+|.            +.|++++|+|  ++.+|++++.||+|++||+.++.....                    
T Consensus         5 ~~~~~~~h~------------~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~~--------------------   50 (304)
T 2ynn_A            5 IKKTFSNRS------------DRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRS--------------------   50 (304)
T ss_dssp             CEEEEEEEC------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred             eEEeecCCC------------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence            345677888            8899999966  778999999999999999988764332                    


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                              +..|...|.+++|+|++++|++| 
T Consensus        51 --------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A           51 --------------------------------------------------------IQVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             --------------------------------------------------------EECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             --------------------------------------------------------eeccCCcEEEEEEeCCCCEEEEEC
Confidence                                                                    24667789999999999999998 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|++|++||+++++...        .+.+|...|.+++|+|++ .+|++++.|+.|++||++++...   ...       
T Consensus        75 ~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~-------  135 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQT-------  135 (304)
T ss_dssp             TTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEE-------
T ss_pred             CCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhh-------
Confidence            79999999999776543        457899999999999998 89999999999999999876321   112       


Q ss_pred             CCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeC
Q 010287          331 GTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                           +.+|...|.+++|+| ++.+|++|+. +.|++||++. ..+...+. .+...               +..+.|+|
T Consensus       136 -----~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~~  194 (304)
T 2ynn_A          136 -----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDYYP  194 (304)
T ss_dssp             -----ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEECC
T ss_pred             -----hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEEEE
Confidence                 455668899999999 6789999875 9999999986 44444443 23222               34677876


Q ss_pred             --CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287          408 --DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS  485 (513)
Q Consensus       408 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  485 (513)
                        ++++|++|+.|+.|++||+.++ .....+++|...|..++|+|++++|++|+.||.|++   |+....+.......|.
T Consensus       195 ~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i---Wd~~~~~~~~~~~~~~  270 (304)
T 2ynn_A          195 LPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI---WNSSTYKVEKTLNVGL  270 (304)
T ss_dssp             STTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE---EETTTCCEEEEECCSS
T ss_pred             cCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE---EECCCCceeeeccCCC
Confidence              7789999999999999999987 455889999999999999999999999999999999   5444333333344577


Q ss_pred             CCeeEEEEeCCCC--EEEEEcCCcEEEEe
Q 010287          486 MKLLHLAWHPSEN--SIACAASNSLYMYY  512 (513)
Q Consensus       486 ~~i~~~~~sp~~~--~la~~~~~~~~i~~  512 (513)
                      ..+.+++|+|++.  +||+++++++.+|.
T Consensus       271 ~~~~~~~~~~~~~~~~~asg~~~g~~~~~  299 (304)
T 2ynn_A          271 ERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (304)
T ss_dssp             SSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred             ccEEEEEECCCCCceEEEEecCCceEEEE
Confidence            8999999999985  68999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.3e-40  Score=304.67  Aligned_cols=305  Identities=15%  Similarity=0.238  Sum_probs=229.7

Q ss_pred             cccccc-cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           31 EVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~-~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ..+|.+ .|.+++|+|+|++||+|+.|++|+||++.++...                    .......+|.         
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------   61 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------   61 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS---------
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC---------
Confidence            446877 9999999999999999999999999998765421                    0111236787         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+|++++.|+++++|++..+......                                     
T Consensus        62 ---~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~~~~-------------------------------------   99 (345)
T 3fm0_A           62 ---RTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFECVT-------------------------------------   99 (345)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EEEEE-------------------------------------
T ss_pred             ---CcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeEEEE-------------------------------------
Confidence               8899999965  7889999999999999998765432211                                     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                           .+.+|...|.+++|+|++++|++| .|++|++||++.+.....
T Consensus       100 -------------------------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A          100 -------------------------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             -------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             -------------------------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence                                                 146888999999999999999998 799999999986543221


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      +     ..+.+|...|.+++|+|++ .+|++++.|+.|++||.+++....  ...            +.+|...|.+++|
T Consensus       143 ~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--~~~------------~~~h~~~v~~l~~  202 (345)
T 3fm0_A          143 V-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--CAT------------LEGHESTVWSLAF  202 (345)
T ss_dssp             E-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--EEE------------ECCCSSCEEEEEE
T ss_pred             E-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--EEE------------ecCCCCceEEEEE
Confidence            1     1457899999999999998 899999999999999987654210  112            4556689999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccc--cccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL--YENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      +|++++|++++. ++|++||....+........ .......+..+  ++..   .|++++|+|++..|++++.|+.|++|
T Consensus       203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR---TIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS---CEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC---cEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            999999999875 99999997542221110000 00000000000  0111   25699999999999999999999999


Q ss_pred             ecCCCCcc--------ceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287          425 GCSEGSAE--------STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR  466 (513)
Q Consensus       425 d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~  466 (513)
                      +.......        .....+|...|.+++|+|++. +||+|+.||.|++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF  330 (345)
T ss_dssp             EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence            98764321        122358999999999999985 8999999999999

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-40  Score=304.99  Aligned_cols=290  Identities=17%  Similarity=0.206  Sum_probs=236.0

Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      +....+.+|.            +.|++++|+|  ++.+|++++.||+|++||+.+++....                   
T Consensus        46 ~~~~~l~gH~------------~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------------   92 (340)
T 1got_B           46 RTRRTLRGHL------------AKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKVHA-------------------   92 (340)
T ss_dssp             CEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred             hhheeecCCC------------CceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence            3456688898            8899999954  788999999999999999987654332                   


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                               +..|...|.+++|+|++++|++|
T Consensus        93 ---------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           93 ---------------------------------------------------------IPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             ---------------------------------------------------------EECSSSCEEEEEECTTSSEEEEE
T ss_pred             ---------------------------------------------------------eecCCccEEEEEECCCCCEEEEE
Confidence                                                                     24566779999999999999998


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                       .|+.|++|++.+........    ..+.+|...|.++.|++++  .+++++.|+.|++||++++..    ...      
T Consensus       116 ~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~----~~~------  179 (340)
T 1got_B          116 GLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ----TTT------  179 (340)
T ss_dssp             ETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE----EEE------
T ss_pred             eCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE----EEE------
Confidence             79999999998654322211    2467899999999999986  488999999999999988765    233      


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                            +.+|.+.|.+++|+|+++++++|+. +.|++||++. +.....+.+|...               |++++|+|+
T Consensus       180 ------~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p~  237 (340)
T 1got_B          180 ------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFFPN  237 (340)
T ss_dssp             ------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEECTT
T ss_pred             ------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEcCC
Confidence                  3456688999999999999999875 9999999996 7888888887765               559999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccC
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM  486 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  486 (513)
                      +++|++|+.||.|++||+.++... ..+.  .+...+.+++|+|++++|++|+.|+.|++   |+...........+|..
T Consensus       238 ~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v---wd~~~~~~~~~~~~h~~  313 (340)
T 1got_B          238 GNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV---WDALKADRAGVLAGHDN  313 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE---EETTTCCEEEEEECCSS
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEEEEECCCCeEEE---EEcccCcEeeEeecCCC
Confidence            999999999999999999876433 3333  33457999999999999999999999999   43332223334457999


Q ss_pred             CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          487 KLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .|.+++|+|++++||+++ ++.++||+
T Consensus       314 ~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          314 RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999888 66788885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-41  Score=323.33  Aligned_cols=343  Identities=10%  Similarity=0.144  Sum_probs=259.9

Q ss_pred             ccccccEEEEEEcCCCC-EEEee----------cCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCC
Q 010287           32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE  100 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  100 (513)
                      +.+...|++++|+|+|+ +||+|          +.||.|+||++.++...                    .... ...|.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~-~~~~~   67 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIA-SLQVD   67 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSC-CCCCS
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEE-EEecC
Confidence            34567899999999987 99999          88999999998765421                    0001 12354


Q ss_pred             CcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec
Q 010287          101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (513)
Q Consensus       101 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (513)
                                  ..|++++|+|  ++.+|++++.||.|++|++.......                              
T Consensus        68 ------------~~v~~~~~s~--~~~~l~~~~~dg~v~vw~~~~~~~~~------------------------------  103 (416)
T 2pm9_A           68 ------------SKFNDLDWSH--NNKIIAGALDNGSLELYSTNEANNAI------------------------------  103 (416)
T ss_dssp             ------------SCEEEEEECS--SSSCEEEEESSSCEEEECCSSTTSCC------------------------------
T ss_pred             ------------CceEEEEECC--CCCeEEEEccCCeEEEeecccccccc------------------------------
Confidence                        7899999955  77899999999999999997621000                              


Q ss_pred             cCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEE
Q 010287          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLW  258 (513)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vw  258 (513)
                                                               .. ...+.+|...|.+++|+|+ +++|+++ .|+.|++|
T Consensus       104 -----------------------------------------~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A          104 -----------------------------------------NS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             -----------------------------------------CE-EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             -----------------------------------------cc-hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence                                                     00 0113578889999999998 8999998 79999999


Q ss_pred             EcCCCc------ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287          259 NLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  332 (513)
Q Consensus       259 d~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  332 (513)
                      |+++..      ....+     .....|...|.+++|+|++..+|++++.||.|++||+++++.    ...+..+..   
T Consensus       142 d~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~---  209 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTP-----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSP---  209 (416)
T ss_dssp             BTTTTSSCTTTCCCBCC-----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCC---
T ss_pred             ECCCCcccccccccccc-----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEecccc---
Confidence            998765      22211     234678899999999999548999999999999999988765    333333211   


Q ss_pred             ccccccccccEEEEEEeecC-CEEEEEeC-C---eEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEe
Q 010287          333 RSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       333 ~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~---~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                         ..+|...+.+++|+|++ .+++++++ +   .|++||++....++..+. +|...               |++++|+
T Consensus       210 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~~s  271 (416)
T 2pm9_A          210 ---NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLDWC  271 (416)
T ss_dssp             ---SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEEEC
T ss_pred             ---ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEEeC
Confidence               12345789999999997 57888775 6   999999997446667776 66654               5599999


Q ss_pred             C-CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEEecCCCCCccccC------
Q 010287          407 G-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN------  478 (513)
Q Consensus       407 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~------  478 (513)
                      | ++++|++++.||.|++||+.++ .....+..|..++.+++|+|++ .+|++++.|+.|++.+..........      
T Consensus       272 ~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~  350 (416)
T 2pm9_A          272 HQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK  350 (416)
T ss_dssp             SSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------
T ss_pred             CCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc
Confidence            9 9999999999999999999987 4557888999999999999999 89999999999999211111000000      


Q ss_pred             --------------------------CccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          479 --------------------------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       479 --------------------------~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                                                .....|..++..++|+|+|++||+++ ++.+.||.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          351 QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             ----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence                                      00011567888999999999999998 66788885

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.4e-40  Score=357.29  Aligned_cols=403  Identities=13%  Similarity=0.109  Sum_probs=297.8

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      ....|++...  + ......+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       
T Consensus       638 ~i~vw~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----------------------  691 (1249)
T 3sfz_A          638 TLQVFKAETG--E-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-----------------------  691 (1249)
T ss_dssp             CEEEEETTTC--C-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred             eEEEEECCCC--C-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-----------------------
Confidence            3456766541  1 1223457999999999999999999999999999999877653                       


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ...+.+|.            ..|.+++|+|..++..+++++.|+.|++||+.++++......+.               .
T Consensus       692 ~~~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~---------------~  744 (1249)
T 3sfz_A          692 VHTYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT---------------N  744 (1249)
T ss_dssp             EEEEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS---------------S
T ss_pred             EEEEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC---------------C
Confidence            35567888            88999999876677789999999999999999987665544322               1


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCccc---------------------------------
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNL---------------------------------  219 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------------  219 (513)
                      ....++|+|+|..+            ++++.++.+++|++.......                                 
T Consensus       745 ~v~~~~~sp~~~~l------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  812 (1249)
T 3sfz_A          745 SVNHCRFSPDDELL------------ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK  812 (1249)
T ss_dssp             CEEEEEECSSTTEE------------EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred             CEEEEEEecCCCEE------------EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence            23367888888876            777888889999876542211                                 


Q ss_pred             ---------------ccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCC
Q 010287          220 ---------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  283 (513)
Q Consensus       220 ---------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  283 (513)
                                     ..........+|...|.+++|+|+++.++++ .++.|++||+.++....        .+.+|...
T Consensus       813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~--------~~~~h~~~  884 (1249)
T 3sfz_A          813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA--------DCRGHLSW  884 (1249)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE--------EECCCSSC
T ss_pred             EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee--------ecCCCccc
Confidence                           0111222334788999999999999999999 79999999999765443        45789999


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-------------------------ceeeccccCCCCcccccc
Q 010287          284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------------------------SKLFEEQEAPGTRSFFTE  338 (513)
Q Consensus       284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~  338 (513)
                      |.+++|+|++ ..|++++.||.|++||+.+.......                         ...+....    ......
T Consensus       885 v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  959 (1249)
T 3sfz_A          885 VHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT----GQIDYL  959 (1249)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS----CCEEEE
T ss_pred             eEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCc----ceEEEc
Confidence            9999999998 89999999999999998653211000                         00000000    001122


Q ss_pred             ccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287          339 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY  417 (513)
Q Consensus       339 ~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  417 (513)
                      +...+.+++|+|+++++++|+. |.|++||+.. +.....+.+|...+               ++++|+|++++|++++.
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAV---------------RHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCC---------------CCEEECSSSSCEEEECS
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCce---------------EEEEECCCCCEEEEEcC
Confidence            3467999999999999999886 9999999986 77777777776542               35666666666666666


Q ss_pred             CCcEEEEecCCCC---------------------------------------ccceeecCCCCceeEEEEcCCCCceeee
Q 010287          418 SNLFRVFGCSEGS---------------------------------------AESTTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       418 dg~i~vwd~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ||.|++||+.++.                                       .....+.+|..++.+++++|++++++++
T Consensus      1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A         1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp             SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred             CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence            6666666554421                                       2334566788899999999999999999


Q ss_pred             cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          459 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       459 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +.|+.|++   |+............|...|++++|+|++++||+++ ++.+++|+
T Consensus      1104 s~d~~v~i---wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1104 SADKTAKI---WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CCSSCCCE---ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             cCCCcEEE---EECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999999   44332233344556899999999999999999888 55688886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-39  Score=297.49  Aligned_cols=286  Identities=19%  Similarity=0.327  Sum_probs=236.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++||+|+.||.|+||+..+++                       ....+.+|.         
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------   65 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------   65 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS---------
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC---------
Confidence            456899999999999999999999999999999976554                       334567888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+|++++.|+.|++||+.+++....                                      
T Consensus        66 ---~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------------  102 (312)
T 4ery_A           66 ---LGISDVAWSS--DSNLLVSASDDKTLKIWDVSSGKCLKT--------------------------------------  102 (312)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred             ---CceEEEEEcC--CCCEEEEECCCCEEEEEECCCCcEEEE--------------------------------------
Confidence               8899999965  778999999999999999987754332                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|...|.+++|+|++++|+++ .|+.|++||+++++... 
T Consensus       103 --------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-  143 (312)
T 4ery_A          103 --------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-  143 (312)
T ss_dssp             --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence                                                  35677889999999999999998 79999999998765443 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+..|...|.+++|+|++ .+|++++.||.|++||+++++..    ..+.           ..+...+..++|
T Consensus       144 -------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~-----------~~~~~~~~~~~~  200 (312)
T 4ery_A          144 -------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI-----------DDDNPPVSFVKF  200 (312)
T ss_dssp             -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC-----------CSSCCCEEEEEE
T ss_pred             -------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe-----------ccCCCceEEEEE
Confidence                   456788999999999998 89999999999999999887642    2221           123357999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++++|++++. +.|++||++. ++.+..+.+|......            +......+++.+|++|+.||.|++||+.
T Consensus       201 ~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          201 SPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYC------------IFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSC------------CCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             CCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEE------------EEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            999999999875 9999999996 7777777776543211            1123334678999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeec--CCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~  466 (513)
                      ++ .....+.+|...+..++++|+++++++++  .|+.|++
T Consensus       268 ~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~  307 (312)
T 4ery_A          268 TK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL  307 (312)
T ss_dssp             TC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred             Cc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence            77 55588899999999999999999999986  6999998

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-39  Score=299.34  Aligned_cols=285  Identities=14%  Similarity=0.197  Sum_probs=230.3

Q ss_pred             ccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++++|+|++ ++|++|+.|++|++|++.+....                  .......+.+|.        
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------   65 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------   65 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS--------
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc--------
Confidence            456899999999999975 89999999999999998654320                  112345678898        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|  ++.+|++++.|++|++||+.+++....                                     
T Consensus        66 ----~~v~~~~~s~--dg~~l~s~s~D~~v~~wd~~~~~~~~~-------------------------------------  102 (319)
T 3frx_A           66 ----HIVQDCTLTA--DGAYALSASWDKTLRLWDVATGETYQR-------------------------------------  102 (319)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----ccEEEEEECC--CCCEEEEEeCCCEEEEEECCCCCeeEE-------------------------------------
Confidence                8899999954  888999999999999999998764332                                     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             +.+|...|.+++|+|++++|++| .|++|++||++. ....
T Consensus       103 ---------------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~  142 (319)
T 3frx_A          103 ---------------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLA  142 (319)
T ss_dssp             ---------------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEE
T ss_pred             ---------------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEE
Confidence                                                   35788899999999999999998 799999999973 2222


Q ss_pred             eecccCccccccccCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                              .+.+|...|.++.|.|..     ...+++++.|+.|++||+++.+.    ...            +.+|...
T Consensus       143 --------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~------------~~~h~~~  198 (319)
T 3frx_A          143 --------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EAD------------FIGHNSN  198 (319)
T ss_dssp             --------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----EEE------------ECCCCSC
T ss_pred             --------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----hee------------ecCCCCc
Confidence                    457899999999999853     14899999999999999987654    222            3456689


Q ss_pred             EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      |.+++|+|++++|++++. +.|++||+.. ++.+..+..+..                +.+++|+|++.+|++++.+ .+
T Consensus       199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i  260 (319)
T 3frx_A          199 INTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GI  260 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-Cc
Confidence            999999999999999875 9999999996 777766654432                4589999999999988765 59


Q ss_pred             EEEecCCCCccceee--------cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          422 RVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++|++.... ....+        ..+...+.+++|+|++++|++|+.|+.|++
T Consensus       261 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v  312 (319)
T 3frx_A          261 KVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV  312 (319)
T ss_dssp             EEEEETTEE-EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEeCcCe-eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence            999988652 22222        234567889999999999999999999999

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-40  Score=312.96  Aligned_cols=303  Identities=12%  Similarity=0.145  Sum_probs=236.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++||+|+.||+|+|||..+++.                       ...+.+|.         
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~---------  108 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC---------  108 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC---------
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC---------
Confidence            4568999999999999999999999999999999876553                       24567787         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+|++++.|+.+++|++........                                .     
T Consensus       109 ---~~v~~~~~s~--~g~~las~~~d~~v~iw~~~~~~~~~~--------------------------------~-----  146 (380)
T 3iz6_a          109 ---PWVMECAFAP--NGQSVACGGLDSACSIFNLSSQADRDG--------------------------------N-----  146 (380)
T ss_dssp             ---TTCCCCEECT--TSSEEEECCSSSCCEEEECCCCSSCCC--------------------------------S-----
T ss_pred             ---CCEEEEEECC--CCCEEEEeeCCCcEEEEECCCCccccC--------------------------------C-----
Confidence               7899999955  788999999999999999975421000                                0     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                       .               .....+.+|...|.++.|.|+ +..|++| .|++|++||+++++...
T Consensus       147 -----------------~---------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          147 -----------------M---------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             -----------------S---------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             -----------------c---------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence                             0               000014688899999999996 4568888 79999999999776543


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      .+.   .....+|...|.++.|++.++++|++|+.|+.|++||++.....   +..            +.+|.+.|.+++
T Consensus       195 ~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~------------~~~h~~~v~~v~  256 (380)
T 3iz6_a          195 IFG---SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---VRT------------YHGHEGDINSVK  256 (380)
T ss_dssp             EEC---CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---CEE------------ECCCSSCCCEEE
T ss_pred             Eee---cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---eEE------------ECCcCCCeEEEE
Confidence            221   01225789999999998843489999999999999999753221   222            455668899999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |+|++++|++|++ ++|++||+++ ++.+..+..+.....        .....+++++|+|+|++|++|+.||.|++||+
T Consensus       257 ~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          257 FFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             ECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             EecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            9999999999875 9999999996 766666654432110        01112458999999999999999999999999


Q ss_pred             CCCCccceee----cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          427 SEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++... ..+    .+|...|.+++|+|++++|++|+.|+.|++
T Consensus       328 ~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i  370 (380)
T 3iz6_a          328 LLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI  370 (380)
T ss_dssp             TTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             CCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence            877433 333    689999999999999999999999999999

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=311.91  Aligned_cols=338  Identities=16%  Similarity=0.206  Sum_probs=253.5

Q ss_pred             ccccccccEEEEEEcCCCC-EEEeecCCCcEEEEEe----eCCCCCCCccCccccccccccCCCcceEeccccCCCCccc
Q 010287           30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  104 (513)
                      ....|.+.|++++|+|+|+ +||+|+.||.|++|++    .+++..    -.+         .+...+...+.+|.    
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~----  102 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY----WKL---------TIIAELRHPFALSA----  102 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C----EEE---------EEEEEEECCCCCC-----
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc----ccc---------cccccccccccccc----
Confidence            4556779999999999999 9999999999999999    655410    000         00111122222220    


Q ss_pred             ccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       105 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                        ....+...|++++|+|  ++.+|++++.||.|++||. +++....                                 
T Consensus       103 --~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~~~-~~~~~~~---------------------------------  144 (425)
T 1r5m_A          103 --SSGKTTNQVTCLAWSH--DGNSIVTGVENGELRLWNK-TGALLNV---------------------------------  144 (425)
T ss_dssp             -------CBCEEEEEECT--TSSEEEEEETTSCEEEEET-TSCEEEE---------------------------------
T ss_pred             --cccCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------------
Confidence              0000117899999965  7889999999999999993 3322211                                 


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  263 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~  263 (513)
                                                                 +.+|...|.+++|+|++++|+++ .|+.|++||++++
T Consensus       145 -------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          145 -------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             -------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             -------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence                                                       34677889999999999999998 7999999999876


Q ss_pred             cceeeecccCccccccccCC---------------eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          264 NQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      +....        +..+...               +.++.|+|++  .+++++.||.|++||++++..    ...     
T Consensus       182 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~----~~~-----  242 (425)
T 1r5m_A          182 TVMQH--------FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP----TGK-----  242 (425)
T ss_dssp             EEEEE--------ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC----SEE-----
T ss_pred             cEEEE--------eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce----eee-----
Confidence            54432        2233333               8899999986  588999999999999988654    222     


Q ss_pred             CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                             +..|...|.+++|+|++++|++++. +.|++||++. ++.+..+..|...               +.+++|+|
T Consensus       243 -------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~  299 (425)
T 1r5m_A          243 -------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------IVSASWVG  299 (425)
T ss_dssp             -------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------EEEEEEET
T ss_pred             -------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------EEEEEECC
Confidence                   2345578999999999999999875 9999999996 7777777766654               45899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc-----------
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD-----------  476 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-----------  476 (513)
                      ++ ++++++.|+.|++||+.++ .....+..|..++..+.|+|++++|++++.||.|++   |+.....           
T Consensus       300 ~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i---~~~~~~~~~~~~~~~~~~  374 (425)
T 1r5m_A          300 DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV---YDLKKLNSKSRSLYGNRD  374 (425)
T ss_dssp             TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE---EECHHHHC----------
T ss_pred             CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE---EECCCCccceeeeecccc
Confidence            99 9999999999999999877 455778889999999999999999999999999999   2222111           


Q ss_pred             ---------cCCccccccC--CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          477 ---------ANGNAFDFSM--KLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       477 ---------~~~~~~~~~~--~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                               .......|..  .|++++|+|++++|++++ ++.+.+|.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence                     2223334655  999999999999998777 66688886

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-39  Score=323.40  Aligned_cols=388  Identities=12%  Similarity=0.113  Sum_probs=284.3

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|.+.|++++|+|+|++||+++ ++.|+||++.++..                   .......+.+|.          
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------   63 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------   63 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence            346889999999999999999998 78999999886511                   001235577888          


Q ss_pred             cccc-ceeEEEeecCCCceEEEeecCCeEEEEEccCc------eeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287          111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (513)
Q Consensus       111 ~~~~-i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (513)
                        .. |++++|+|..++.+|++++.||.|++||+.++      .......+..+.             .....++|+|+|
T Consensus        64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~~~  128 (615)
T 1pgu_A           64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-------------GPISDISWDFEG  128 (615)
T ss_dssp             --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-------------SCEEEEEECTTS
T ss_pred             --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc-------------ccEEEEEEeCCC
Confidence              88 99999955227789999999999999999765      323332222221             123377899999


Q ss_pred             CccccccCCCCCCCCcCCCCC----CceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEE
Q 010287          184 GCGERNFGCASNDSSFPPGGV----SSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINL  257 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~v  257 (513)
                      +.+            ++++.+    +.+.+|+...        ... .+.+|...|.+++|+|+++ .++++ .|+.|++
T Consensus       129 ~~l------------~~~~~~~~~~~~v~~~d~~~--------~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v  187 (615)
T 1pgu_A          129 RRL------------CVVGEGRDNFGVFISWDSGN--------SLG-EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF  187 (615)
T ss_dssp             SEE------------EEEECCSSCSEEEEETTTCC--------EEE-ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             CEE------------EEeccCCCCccEEEEEECCC--------cce-eeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            876            444444    6888888321        222 2468999999999999998 68887 7999999


Q ss_pred             EEcCCCcceeeecccCccccccccC---CeEEEEEeCC-CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          258 WNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       258 wd~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      ||+.+.+...        .+..|..   .|.+++|+|+ + ++|++++.||.|++||+++++.    +..+...      
T Consensus       188 wd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~------  248 (615)
T 1pgu_A          188 YQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF----LKYIEDD------  248 (615)
T ss_dssp             EETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE----EEECCBT------
T ss_pred             EeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE----eEEeccc------
Confidence            9998665433        4567888   9999999999 7 8999999999999999988765    2222100      


Q ss_pred             cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc-------------------------------
Q 010287          334 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH-------------------------------  381 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-------------------------------  381 (513)
                        ...|...|.+++|+ ++++|++++. +.|++||+++ ++.+..+..+                               
T Consensus       249 --~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          249 --QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  324 (615)
T ss_dssp             --TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             --ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence              01455789999999 9999998775 9999999875 4333332222                               


Q ss_pred             --------------ccccccc-----------------------------------------c-----------------
Q 010287          382 --------------EHLRPKL-----------------------------------------C-----------------  389 (513)
Q Consensus       382 --------------~~~~~~~-----------------------------------------~-----------------  389 (513)
                                    ...+..+                                         .                 
T Consensus       325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  404 (615)
T 1pgu_A          325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE  404 (615)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence                          0000000                                         0                 


Q ss_pred             -------------------------------------------------------------c---------------ccc
Q 010287          390 -------------------------------------------------------------D---------------LYE  393 (513)
Q Consensus       390 -------------------------------------------------------------~---------------~~~  393 (513)
                                                                                   +               ...
T Consensus       405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~  484 (615)
T 1pgu_A          405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK  484 (615)
T ss_dssp             CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccccc
Confidence                                                                         0               000


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcC----------CCCceeeecCCC
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPLGSLSG  462 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~~~~~d~  462 (513)
                      ......|++++|+|++++|++++.||.|++||+.++ .....+.+ |..++.+++|+|          ++++|++++.|+
T Consensus       485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg  563 (615)
T 1pgu_A          485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT  563 (615)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred             CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence            001124778999999999999999999999999987 44456666 999999999999          999999999999


Q ss_pred             eEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          463 VVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       463 ~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .|++   |+.... ........|...|++++|+|+++ |++++ ++.+++|+
T Consensus       564 ~i~i---w~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          564 NIFI---YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             CEEE---EESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             cEEE---EECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            9999   333321 12223446899999999999999 88776 66788986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-39  Score=304.13  Aligned_cols=298  Identities=16%  Similarity=0.299  Sum_probs=226.5

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc------cc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------DY  105 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~------~~  105 (513)
                      .+|.+.|+|++|+|+|++||+|+ ++.++||++.+++..                       ..+..|....      ..
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~  116 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT  116 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence            46999999999999999999987 678999998776532                       1111111000      00


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                      .........|.+++|+|  ++.+|++++.|++|++||+.+++....                                  
T Consensus       117 ~~~~~~~~~v~~v~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------  160 (393)
T 1erj_A          117 SSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMI----------------------------------  160 (393)
T ss_dssp             ----CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred             cccCCCceeEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEE----------------------------------
Confidence            00001114589999955  888999999999999999988764332                                  


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                                +.+|...|.+++|+|++++|+++ .|++|++||+++++
T Consensus       161 ------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          161 ------------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             ------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ------------------------------------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence                                                      35788889999999999999998 79999999998765


Q ss_pred             ceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      ....         ..+...+.+++|+| ++ .+|++++.|+.|++||++++...    ..+....     ....+|...|
T Consensus       199 ~~~~---------~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~~~-----~~~~~h~~~v  259 (393)
T 1erj_A          199 CSLT---------LSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDSEN-----ESGTGHKDSV  259 (393)
T ss_dssp             EEEE---------EECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCE
T ss_pred             eEEE---------EEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecccc-----cCCCCCCCCE
Confidence            4432         22566799999999 66 99999999999999999887652    2222111     1135677899


Q ss_pred             EEEEEeecCCEEEEEeC-CeEEEEEccCCC-----------CCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          344 SDIKFARNGRHILSRDY-MTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      .+++|+|++++|++|+. +.|++||++...           .....+.+|...               |++++|+|++++
T Consensus       260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~  324 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEY  324 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGGCE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCCCE
Confidence            99999999999999875 999999997521           122333444433               568999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC------CCCceeeecCCCeEEE
Q 010287          412 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR  466 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~  466 (513)
                      |++|+.|+.|++||+.++ .....+.+|...|.++++++      ++++|++|+.|+.|++
T Consensus       325 l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i  384 (393)
T 1erj_A          325 ILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  384 (393)
T ss_dssp             EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             EEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence            999999999999999987 45578899999999999876      6889999999999999

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.8e-38  Score=292.65  Aligned_cols=291  Identities=18%  Similarity=0.263  Sum_probs=226.0

Q ss_pred             ccccccccEEEEEE-----cC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc
Q 010287           30 EEVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF  103 (513)
Q Consensus        30 ~~~~h~~~V~~v~~-----sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  103 (513)
                      ...+|.+.|++++|     ++ ++++||+|+.|++|+||++...+...                ........+.+|.   
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---   76 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---   76 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS---
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC---
Confidence            45689999999999     77 89999999999999999987544210                0112335578888   


Q ss_pred             cccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287          104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (513)
Q Consensus       104 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (513)
                               ..|.+++|+|  ++.++++++.|++|++||+++++....                                
T Consensus        77 ---------~~V~~~~~~~--~~~~l~s~s~D~~v~lwd~~~~~~~~~--------------------------------  113 (343)
T 2xzm_R           77 ---------HFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKR--------------------------------  113 (343)
T ss_dssp             ---------SCEEEEEECS--STTEEEEEETTSEEEEEETTSSCEEEE--------------------------------
T ss_pred             ---------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEE--------------------------------
Confidence                     8899999965  778999999999999999988754321                                


Q ss_pred             CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  262 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~  262 (513)
                                                                  +.+|...|.+++|+|++++|+++ .|++|++||+..
T Consensus       114 --------------------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R          114 --------------------------------------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             --------------------------------------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             --------------------------------------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence                                                        35788899999999999999998 799999999973


Q ss_pred             CcceeeecccCccccccccCCeEEEEEeCCCC---------eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          263 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                       ......     .....|...|.+++|+|++.         .+|++++.|+.|++||... ..    ...          
T Consensus       150 -~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~----~~~----------  208 (343)
T 2xzm_R          150 -ECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI----RYT----------  208 (343)
T ss_dssp             -CEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE----EEE----------
T ss_pred             -Cceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce----eEE----------
Confidence             222211     12347889999999999852         5899999999999999432 21    222          


Q ss_pred             cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287          334 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                        +.+|...|.+++|+|++++|++|+. +.|++||+.....+...+.. ...               |.+++|+|+++++
T Consensus       209 --~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~---------------v~~v~~sp~~~~l  270 (343)
T 2xzm_R          209 --FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GST---------------INQIAFNPKLQWV  270 (343)
T ss_dssp             --EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSC---------------EEEEEECSSSCEE
T ss_pred             --EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCc---------------EEEEEECCCCCEE
Confidence              3456688999999999999999875 99999999543444443321 111               4589999999988


Q ss_pred             EEEeCCCcEEEEecCCCCccc-eeec-----------CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAES-TTLE-----------ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~-~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +++ .|+.|++|++.++.... ..+.           +|...+.+++|+|++++|++|+.||.|++
T Consensus       271 a~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          271 AVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             EEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred             EEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence            755 57789999998764322 1232           67788999999999999999999999999

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-39  Score=302.36  Aligned_cols=244  Identities=10%  Similarity=0.102  Sum_probs=187.6

Q ss_pred             ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      .+|...|.+++|+|++++++++.||+|++||+.+++.....    .....+|...|++++|+|++ ++|++++.|+.|++
T Consensus        91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i  165 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV  165 (357)
T ss_dssp             EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence            46778899999999988777668999999999876543211    11345789999999999999 99999999999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEe-CCeEEEEEccCCCCCeeeeeccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      ||+++++.    ...            +.+|...|.+++|+|++. ++++++ |+.|++||+++ +++...+..+.... 
T Consensus       166 wd~~~~~~----~~~------------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~-  227 (357)
T 4g56_B          166 WDLSQKAV----LKS------------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDT-  227 (357)
T ss_dssp             EETTTTEE----EEE------------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCS-
T ss_pred             EECCCCcE----EEE------------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeeccccc-
Confidence            99988765    233            345668899999999875 667766 59999999986 66555444322211 


Q ss_pred             ccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeE
Q 010287          387 KLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV  464 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  464 (513)
                                  .+++++|+|++ .+|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++ ++||+|+.|+.|
T Consensus       228 ------------~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          228 ------------IPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             ------------CEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             ------------cccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence                        14589999975 68889999999999999987 4557889999999999999987 579999999999


Q ss_pred             EEecCCCCCccccCCccccccCCeeEEEEeC-CCCEEEEEc-CCcEEEEe
Q 010287          465 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY  512 (513)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~la~~~-~~~~~i~~  512 (513)
                      ++   |+....+ ....++|...|++++|+| ++++||+++ |+.+++|+
T Consensus       295 ~i---wd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          295 AV---LDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EE---ECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EE---EECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            99   4433211 123447999999999999 799999877 77899986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=294.96  Aligned_cols=299  Identities=15%  Similarity=0.216  Sum_probs=229.6

Q ss_pred             eEeccccCCCCcccccccccccc-cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      .....+.+|.            . .|.+++|+|  ++.+|++++.|++|+|||+.++......                 
T Consensus         6 ~~~~~~~~h~------------~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~-----------------   54 (345)
T 3fm0_A            6 VLLGRVPAHP------------DSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKS-----------------   54 (345)
T ss_dssp             EEEEEECCST------------TSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEE-----------------
T ss_pred             EEeeeecCCC------------CCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeee-----------------
Confidence            3556678887            5 899999965  7889999999999999999876532210                 


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                                                              ....+|...|.+++|+|++++|++
T Consensus        55 --------------------------------------------------------~~~~~h~~~v~~~~~sp~g~~l~s   78 (345)
T 3fm0_A           55 --------------------------------------------------------VLSEGHQRTVRKVAWSPCGNYLAS   78 (345)
T ss_dssp             --------------------------------------------------------EECSSCSSCEEEEEECTTSSEEEE
T ss_pred             --------------------------------------------------------eeccccCCcEEEEEECCCCCEEEE
Confidence                                                                    112578889999999999999999


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      | .|++|++|++........      ..+.+|...|.+++|+|++ ++|++++.|+.|++||++++.... .+..     
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~-~~~~-----  145 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE-CVSV-----  145 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE-EEEE-----
T ss_pred             EECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE-EEEE-----
Confidence            8 799999999986542211      1567899999999999998 999999999999999998754211 0112     


Q ss_pred             CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEE
Q 010287          329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                             +.+|...|.+++|+|++++|++++. +.|++||++. +.  ....+.+|...               |++++|
T Consensus       146 -------~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l~~  202 (345)
T 3fm0_A          146 -------LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSLAF  202 (345)
T ss_dssp             -------ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEEEE
T ss_pred             -------ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEEEE
Confidence                   3456688999999999999999875 9999999985 43  34566667654               569999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCcc--------------ceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGSAE--------------STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                      +|++++|++++.|+.|++|+.......              ...+.+ |...|..++|+|++..|++++.|+.|++....
T Consensus       203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence            999999999999999999997432211              122333 88899999999999999999999999992111


Q ss_pred             --C-CCccc--cCC-ccccccCCeeEEEEeCCC-CEEEEEc-CCcEEEEe
Q 010287          471 --D-NSALD--ANG-NAFDFSMKLLHLAWHPSE-NSIACAA-SNSLYMYY  512 (513)
Q Consensus       471 --~-~~~~~--~~~-~~~~~~~~i~~~~~sp~~-~~la~~~-~~~~~i~~  512 (513)
                        . .....  +.. ....|...|++++|+|++ .+||+++ |+.+++|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence              1 11000  000 123588999999999998 4899887 77888986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-38  Score=296.66  Aligned_cols=292  Identities=14%  Similarity=0.175  Sum_probs=232.9

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ....+.+|.            +.|++++|+|  ++.+|++++.|++|++||..+++....                    
T Consensus        56 ~~~~l~gH~------------~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------  101 (354)
T 2pbi_B           56 TRRTLKGHG------------NKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHA--------------------  101 (354)
T ss_dssp             EEEEEECCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred             EEEEecCCC------------CeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence            445678898            8999999965  778999999999999999887654332                    


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                              +..|...|.+++|+|++..|+++ 
T Consensus       102 --------------------------------------------------------~~~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B          102 --------------------------------------------------------VTMPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             --------------------------------------------------------EECSSSCCCEEEECTTSSEEEEES
T ss_pred             --------------------------------------------------------EecCCCCEEEEEECCCCCEEEEee
Confidence                                                                    23455668999999999999999 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|+.+++|++.........  .....+..|...|.++.|+|++ ..|++++.|+.|++||+++++.    +..       
T Consensus       126 ~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~----~~~-------  191 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQL----LQS-------  191 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE----EEE-------
T ss_pred             CCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeE----EEE-------
Confidence            7999999998754211100  0112456799999999999998 8999999999999999988765    333       


Q ss_pred             CCccccccccccEEEEEEee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          331 GTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                           +.+|...|.+++|+|  ++.+|++|+. +.|++||+++ ++.+..+..|...               |.+++|+|
T Consensus       192 -----~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p  250 (354)
T 2pbi_B          192 -----FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRYYP  250 (354)
T ss_dssp             -----EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECT
T ss_pred             -----EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEEeC
Confidence                 345567899999988  5789999875 9999999997 8888888888765               55999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS  485 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  485 (513)
                      ++++|++|+.|+.|++||+..+... ..+.  .+...+..+.|+|++++|++|+.|+.|++   |+............|.
T Consensus       251 ~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v---wd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          251 SGDAFASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV---WDVLKGSRVSILFGHE  326 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE---EETTTCSEEEEECCCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE---EECCCCceEEEEECCC
Confidence            9999999999999999999876332 3333  33457889999999999999999999999   4332222223445699


Q ss_pred             CCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          486 MKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ..|++++|+||+++||+++ ++.+++|.
T Consensus       327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999888 66688874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-39  Score=304.72  Aligned_cols=302  Identities=15%  Similarity=0.197  Sum_probs=237.6

Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      ......+.+|.            +.|++++|+|  ++.+|++++.|++|++||+.+++....                  
T Consensus        56 ~~~~~~l~gH~------------~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------  103 (380)
T 3iz6_a           56 LVCCRTLQGHS------------GKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHA------------------  103 (380)
T ss_dssp             CEEEEEECCCS------------SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEE------------------
T ss_pred             eEEeecccccc------------cEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccceE------------------
Confidence            34556788998            8999999965  778999999999999999988764432                  


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                                                                +..|...|.+++|+|++++|++
T Consensus       104 ----------------------------------------------------------~~~h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a          104 ----------------------------------------------------------IKLHCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             ----------------------------------------------------------EECCCTTCCCCEECTTSSEEEE
T ss_pred             ----------------------------------------------------------EecCCCCEEEEEECCCCCEEEE
Confidence                                                                      3467777999999999999999


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      | .|+.+++|++.+........ .....+.+|...|.++.|.|+++..|++++.|+.|++||++++..    +..+... 
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~~-  199 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR----ISIFGSE-  199 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE----EEEECCC-
T ss_pred             eeCCCcEEEEECCCCccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE----EEEeecc-
Confidence            8 79999999997532111000 001256789999999999998657899999999999999998765    2222211 


Q ss_pred             CCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287          329 APGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                            ...+|...|.+++|+| ++.+|++|+. +.|++||++.....+..+.+|...               |++++|+
T Consensus       200 ------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~---------------v~~v~~~  258 (380)
T 3iz6_a          200 ------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD---------------INSVKFF  258 (380)
T ss_dssp             ------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC---------------CCEEEEC
T ss_pred             ------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC---------------eEEEEEe
Confidence                  1246778999999987 8899999875 999999998656788888888765               4599999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccceeecCC-------CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcccc--
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA--  477 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--  477 (513)
                      |++++|++|+.||.|++||+.++... ..+..+       ...+.+++|+|++++|++|+.||.|++   |+....+.  
T Consensus       259 p~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v---wd~~~~~~~~  334 (380)
T 3iz6_a          259 PDGQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV---WDTLLAEMVL  334 (380)
T ss_dssp             TTSSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE---EETTTCCEEE
T ss_pred             cCCCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE---EECCCCceEE
Confidence            99999999999999999999987433 344332       234889999999999999999999999   33221111  


Q ss_pred             --CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          478 --NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       478 --~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                        ......|...|++++|+|++++||+|+ ++.++||.
T Consensus       335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence              111246899999999999999999998 77888986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7e-39  Score=307.00  Aligned_cols=333  Identities=12%  Similarity=0.182  Sum_probs=249.8

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      +.+++++|+|+|++|++|+.||.|++|+..+.+..                       ..+..|.             .+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~  100 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT  100 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence            44568999999999999999999999998765531                       2223332             23


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      ....|  ++++.+|++++.|+.|++||+.+++....                                            
T Consensus       101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------------------  134 (420)
T 3vl1_A          101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI--------------------------------------------  134 (420)
T ss_dssp             EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred             EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence            34456  44778999999999999999987654332                                            


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                                      +.+|...|.+++|+|++++|+++ .|+.|++||+++++...       
T Consensus       135 --------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-------  175 (420)
T 3vl1_A          135 --------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-------  175 (420)
T ss_dssp             --------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-------
T ss_pred             --------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-------
Confidence                                            24788889999999999999998 79999999998766443       


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC------------cccccccccc
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT------------RSFFTEIIAS  342 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  342 (513)
                       .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.    ...+..+.....            ......+...
T Consensus       176 -~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          176 -TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTT----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             -EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             -EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCce----eEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence             457899999999999998 8999999999999999998765    333332211000            0011223456


Q ss_pred             EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCC
Q 010287          343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSN  419 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg  419 (513)
                      +.+++|+|++++|++++. |.|++||++. ++.+..+. .|...               +++++|+|+++ +|++|+.||
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYENG  313 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEETTS
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeCCC
Confidence            666777899999999875 9999999986 55554443 23333               56999999999 999999999


Q ss_pred             cEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCCC---CCc---cccCCccccccCCeeEEE
Q 010287          420 LFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD---NSA---LDANGNAFDFSMKLLHLA  492 (513)
Q Consensus       420 ~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~---~~~---~~~~~~~~~~~~~i~~~~  492 (513)
                      .|++||+.++......+.. |..++..+. .+++++|++++.|+.|++.....   +..   .........|...|.+++
T Consensus       314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  392 (420)
T 3vl1_A          314 MLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC  392 (420)
T ss_dssp             EEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred             eEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence            9999999987665566666 667777774 45788999999999999921111   100   011112335788999999


Q ss_pred             EeCCCC----EEEEEcCCcEEEEe
Q 010287          493 WHPSEN----SIACAASNSLYMYY  512 (513)
Q Consensus       493 ~sp~~~----~la~~~~~~~~i~~  512 (513)
                      |+|+++    ++++++.+.+.+|+
T Consensus       393 ~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          393 YVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EECCSSSSCEEEEEETTTEEEEEE
T ss_pred             EccCCCCcceEEEEcCCceEEEEe
Confidence            999999    77788899898886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=293.64  Aligned_cols=296  Identities=14%  Similarity=0.243  Sum_probs=214.5

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-c-CCCCcccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-Q-SHEPEFDYLK  107 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~~~~~~  107 (513)
                      ...+|.++|++++|+|+  +||+|+.|++|+||++.++..                     .....+ . +|.       
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------   58 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------   58 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC-------
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc-------
Confidence            35579999999999998  999999999999999865431                     112223 2 377       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..|.+++|+|  ++.+|++++.|++|++|++........ .                                  
T Consensus        59 -----~~v~~v~~sp--~~~~las~s~D~~v~iw~~~~~~~~~~-~----------------------------------   96 (330)
T 2hes_X           59 -----KAIRSVAWRP--HTSLLAAGSFDSTVSIWAKEESADRTF-E----------------------------------   96 (330)
T ss_dssp             -----SCEEEEEECT--TSSEEEEEETTSCEEEEEC-------C-C----------------------------------
T ss_pred             -----CCEEEEEECC--CCCEEEEEeCCCcEEEEEcccCcCccc-c----------------------------------
Confidence                 8899999965  778999999999999999864321000 0                                  


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                       .... ..+.+|...|.+++|+|++++|++| .|++|++||++.....
T Consensus        97 ---------------------------------~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           97 ---------------------------------MDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             ---------------------------------CEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             ---------------------------------ceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence                                             0011 1246899999999999999999998 7999999999543322


Q ss_pred             eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      .+.+    ..+.+|...|.+++|+|++ .+|++++.|+.|++||.+++..  ..+..            +.+|.+.|.++
T Consensus       143 ~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~------------~~~h~~~v~~~  203 (330)
T 2hes_X          143 YECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAV------------LNGHEGTVWSS  203 (330)
T ss_dssp             CEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEE------------ECCCSSCEEEE
T ss_pred             eEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEE------------ccCCCCcEEEE
Confidence            1111    1457899999999999998 8999999999999999876421  11222            45566899999


Q ss_pred             EEeec--CCEEEEEeC-CeEEEEEccCCCC-------Ceeeeec-ccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287          347 KFARN--GRHILSRDY-MTLKLWDINMDSG-------PVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG  415 (513)
Q Consensus       347 ~~sp~--~~~l~~~~~-~~v~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  415 (513)
                      +|+|+  +.+|++++. ++|++||+.....       ....+.. |..               .|++++|++++ +|+++
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~v~~s~~~-~l~s~  267 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---------------QVYNVAWGFNG-LIASV  267 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---------------CEEEEEECTTS-CEEEE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---------------ceEEEEEcCCC-EEEEE
Confidence            99998  678888775 9999999974211       1112221 222               25699999765 89999


Q ss_pred             eCCCcEEEEecCCCCcc-c-eeecCCCC-ceeEEEEcC--CCCceeeecCCCeEEE
Q 010287          416 SYSNLFRVFGCSEGSAE-S-TTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR  466 (513)
Q Consensus       416 ~~dg~i~vwd~~~~~~~-~-~~~~~~~~-~v~~~~~~~--~~~~l~~~~~d~~i~~  466 (513)
                      +.||.|++|+..++... . ....+|.. .+..++|+|  ++++|++|+.||.|++
T Consensus       268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~  323 (330)
T 2hes_X          268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF  323 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred             eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence            99999999999866321 2 33457776 899999999  7899999999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-38  Score=343.56  Aligned_cols=385  Identities=14%  Similarity=0.161  Sum_probs=293.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       ...+.+|.         
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~---------  657 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE---------  657 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS---------
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC---------
Confidence            4557999999999999999999999999999999877653                       35567888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.++++++.|++|++||+.+++.......+.               .....+.|+|++...   
T Consensus       658 ---~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~---  714 (1249)
T 3sfz_A          658 ---DEVLCCAFSS--DDSYIATCSADKKVKIWDSATGKLVHTYDEHS---------------EQVNCCHFTNKSNHL---  714 (1249)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCS---------------SCEEEEEECSSSSCC---
T ss_pred             ---CCEEEEEEec--CCCEEEEEeCCCeEEEEECCCCceEEEEcCCC---------------CcEEEEEEecCCCce---
Confidence               8899999955  78899999999999999999987766554332               122356777754422   


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                             +.++++.++.+++|++.....      .. .+.+|...|.+++|+|++++|+++ .||.|++||+.++.....
T Consensus       715 -------~l~sg~~d~~v~vwd~~~~~~------~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~  780 (1249)
T 3sfz_A          715 -------LLATGSNDFFLKLWDLNQKEC------RN-TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS  780 (1249)
T ss_dssp             -------EEEEEETTSCEEEEETTSSSE------EE-EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred             -------EEEEEeCCCeEEEEECCCcch------hh-eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence                   236778899999999976542      22 246899999999999999999998 799999999986543221


Q ss_pred             ec------------------------------------------ccCc-----cccccccCCeEEEEEeCCCCeEEEEEe
Q 010287          269 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS  301 (513)
Q Consensus       269 ~~------------------------------------------~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~  301 (513)
                      +.                                          +...     ....+|...|.+++|+|++ .++++++
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~  859 (1249)
T 3sfz_A          781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL  859 (1249)
T ss_dssp             EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred             ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence            10                                          0000     0012677889999999998 8999999


Q ss_pred             CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee----
Q 010287          302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA----  376 (513)
Q Consensus       302 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~----  376 (513)
                      .||.|++||+.++..    ...            +.+|...|.+++|+|+++++++++. +.|++||+.. .....    
T Consensus       860 ~dg~v~vwd~~~~~~----~~~------------~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~-~~~~~~~~~  922 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLK----VAD------------CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVL  922 (1249)
T ss_dssp             SSSCEEEEETTTTEE----EEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH-HHSCCSSSE
T ss_pred             CCCeEEEEEcCCCce----eee------------cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc-cceeeeecc
Confidence            999999999987654    222            3456688999999999999999875 9999999763 11000    


Q ss_pred             -------------------------eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          377 -------------------------TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       377 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                                               .........    ..   ..-..+.+++|+|+++++++|+.||.|++|++.++ .
T Consensus       923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~  994 (1249)
T 3sfz_A          923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI----DY---LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-R  994 (1249)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE----EE---ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-S
T ss_pred             cceeeEEEcCCCcEEEEecCCcceEEEecCcceE----EE---cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-c
Confidence                                     000000000    00   00113668999999999999999999999999987 4


Q ss_pred             cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      ....+.+|..+|.+++|+|++++|++++.|+.|++   |+...... .....|...|.+++|+|++.+++.+.++.+.+|
T Consensus       995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v---wd~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A          995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV---WNWQTGDY-VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp             CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE---EETTTTEE-ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEE
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEE---EECCCCce-EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEE
Confidence            55778899999999999999999999999999999   33322111 123468899999999999888778889999999


Q ss_pred             eC
Q 010287          512 YA  513 (513)
Q Consensus       512 ~~  513 (513)
                      +.
T Consensus      1071 d~ 1072 (1249)
T 3sfz_A         1071 NV 1072 (1249)
T ss_dssp             ET
T ss_pred             EC
Confidence            63

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.3e-38  Score=287.57  Aligned_cols=293  Identities=20%  Similarity=0.329  Sum_probs=235.7

Q ss_pred             CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287           87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (513)
Q Consensus        87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      .|.+.....+.+|.            +.|++++|+|  ++.+|++++.|+.|++|++.+++....               
T Consensus        10 ~~~~~~~~~~~gh~------------~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~---------------   60 (312)
T 4ery_A           10 KPNYALKFTLAGHT------------KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKT---------------   60 (312)
T ss_dssp             CCCCEEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE---------------
T ss_pred             CCCceeEEEEcccC------------CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccchh---------------
Confidence            45666777889999            8899999955  788999999999999999987654322               


Q ss_pred             cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  246 (513)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  246 (513)
                                                                                   +.+|...|.+++|+|++++
T Consensus        61 -------------------------------------------------------------~~~h~~~v~~~~~~~~~~~   79 (312)
T 4ery_A           61 -------------------------------------------------------------ISGHKLGISDVAWSSDSNL   79 (312)
T ss_dssp             -------------------------------------------------------------ECCCSSCEEEEEECTTSSE
T ss_pred             -------------------------------------------------------------hccCCCceEEEEEcCCCCE
Confidence                                                                         3577788999999999999


Q ss_pred             EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      |+++ .|+.|++||+++++...        .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.    ...  
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~--  144 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC----LKT--  144 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE----EEE--
T ss_pred             EEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE----EEE--
Confidence            9998 79999999998765443        457799999999999998 8999999999999999988764    233  


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                                +..|...|.+++|+|++++|++++. +.|++||++. ++.+..+..+...              .+..++
T Consensus       145 ----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~~~~  199 (312)
T 4ery_A          145 ----------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVSFVK  199 (312)
T ss_dssp             ----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEEEEE
T ss_pred             ----------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceEEEE
Confidence                      2345578999999999999999875 9999999986 6665554332211              145799


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee---EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcc
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR---RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA  481 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  481 (513)
                      |+|++++|++++.|+.|++||+.++ .....+.+|.....   .....+++.+|++|+.||.|++   |+....+.....
T Consensus       200 ~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v---wd~~~~~~~~~~  275 (312)
T 4ery_A          200 FSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI---WNLQTKEIVQKL  275 (312)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE---EETTTCCEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE---EECCCchhhhhh
Confidence            9999999999999999999999987 44466777765433   2334578899999999999999   444433344445


Q ss_pred             ccccCCeeEEEEeCCCCEEEEEc---CCcEEEEeC
Q 010287          482 FDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA  513 (513)
Q Consensus       482 ~~~~~~i~~~~~sp~~~~la~~~---~~~~~i~~~  513 (513)
                      .+|...|.+++|+|++++|++++   ++.+.+|..
T Consensus       276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            57899999999999999999885   788999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=293.60  Aligned_cols=242  Identities=10%  Similarity=0.092  Sum_probs=189.7

Q ss_pred             cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      .|...|.+++|+|++. |++| .||+|++||+++++......    ..+.+|...|++++|+|++ ++|++|+.|+.|++
T Consensus        80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKV  153 (344)
T ss_dssp             EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence            4567799999999864 5565 89999999999776543221    1346899999999999999 99999999999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      ||+++++.    +..            +.+|...|.+++|+|++. +|++++. +.|++||+++ +++...+..+.... 
T Consensus       154 wd~~~~~~----~~~------------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~-  215 (344)
T 4gqb_B          154 WDLAQQVV----LSS------------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY-  215 (344)
T ss_dssp             EETTTTEE----EEE------------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC-
T ss_pred             EECCCCcE----EEE------------EcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec-
Confidence            99998765    333            345668999999999885 6777774 9999999997 77776664333211 


Q ss_pred             ccccccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeE
Q 010287          387 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV  464 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  464 (513)
                                  .+++++|+|+ +++|++|+.||.|++||++++ +....+.+|..+|.+++|+|++ ++|++|+.|+.|
T Consensus       216 ------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i  282 (344)
T 4gqb_B          216 ------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL  282 (344)
T ss_dssp             ------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             ------------cceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence                        1458999985 568899999999999999987 4557899999999999999998 579999999999


Q ss_pred             EEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEc-CCcEEEEe
Q 010287          465 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY  512 (513)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~  512 (513)
                      ++   |+....+ .....+|.+.|++++|+|+++ +|++++ |+.+++|.
T Consensus       283 ~v---wd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          283 AV---LDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EE---ECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EE---EECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            99   4433222 223457999999999999986 566766 88888886

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-38  Score=287.97  Aligned_cols=295  Identities=16%  Similarity=0.202  Sum_probs=227.8

Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      .+.+...+.+|.            +.|++++|+|. ++.+|++++.|++|++|++........                 
T Consensus         6 ~~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~-----------------   55 (319)
T 3frx_A            6 VLVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFG-----------------   55 (319)
T ss_dssp             EEEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEE-----------------
T ss_pred             EEEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCcccc-----------------
Confidence            345667789999            89999999752 236899999999999999865321110                 


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                           .+.. .+.+|...|.+++|+|++++|+
T Consensus        56 -----------------------------------------------------~~~~-~~~~h~~~v~~~~~s~dg~~l~   81 (319)
T 3frx_A           56 -----------------------------------------------------VPVR-SFKGHSHIVQDCTLTADGAYAL   81 (319)
T ss_dssp             -----------------------------------------------------EEEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             -----------------------------------------------------ccce-EEeCCcccEEEEEECCCCCEEE
Confidence                                                                 0111 1468999999999999999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      +| .|++|++||+++++...        .+.+|...|.+++|+|++ .+|++++.|+.|++||++...     ...    
T Consensus        82 s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~-----~~~----  143 (319)
T 3frx_A           82 SASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQC-----LAT----  143 (319)
T ss_dssp             EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCE-----EEE----
T ss_pred             EEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-----EEE----
Confidence            98 79999999999776443        467899999999999998 999999999999999986432     222    


Q ss_pred             cCCCCccccccccccEEEEEEeec------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          328 EAPGTRSFFTEIIASISDIKFARN------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                              +.+|...|.++.|+|.      +..+++++. +.|++||++. .+....+.+|...               |
T Consensus       144 --------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~---------------v  199 (319)
T 3frx_A          144 --------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN---------------I  199 (319)
T ss_dssp             --------ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC---------------E
T ss_pred             --------EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc---------------E
Confidence                    3456688999999985      447888775 9999999986 6777777777765               5


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCC---cc
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNS---AL  475 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~---~~  475 (513)
                      .+++|+|++++|++|+.||.|++||+.++ +....+.. ..++.+++|+|++.+|++++.++ +++  .......   ..
T Consensus       200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~  276 (319)
T 3frx_A          200 NTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP  276 (319)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCc
Confidence            59999999999999999999999999977 33455554 46899999999999999887655 665  1111110   00


Q ss_pred             ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          476 DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       476 ~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ........+...+.+++|+|||++|++++ ++.+++|+
T Consensus       277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            11122234677899999999999999887 66788986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-38  Score=293.66  Aligned_cols=325  Identities=12%  Similarity=0.126  Sum_probs=251.9

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .|.++|.+++|+|||++++++..++.+.+|......                       ......+|.            
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------   51 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------   51 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence            357899999999999999999877766655432111                       111223576            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|+|  ++.++++++ ||.|++|++.++.......                                       
T Consensus        52 ~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~~~~~~~---------------------------------------   89 (337)
T 1gxr_A           52 EVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGNKSPVS---------------------------------------   89 (337)
T ss_dssp             SCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTCCSCSE---------------------------------------
T ss_pred             CceEEEEEec--CCcEEEEcC-CCeEEEEECCCCCceeeee---------------------------------------
Confidence            8899999965  777888888 9999999998764221100                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                      ......|...|.+++|+|++++|+++ .|+.|++||+++++....   
T Consensus        90 --------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---  134 (337)
T 1gxr_A           90 --------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---  134 (337)
T ss_dssp             --------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---
T ss_pred             --------------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---
Confidence                                            00013677889999999999999998 799999999987653221   


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                         ..+..|...|.+++|+|++ +++++++.||.|++||+++++.    ...+            ..|...+.+++|+|+
T Consensus       135 ---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~----~~~~------------~~~~~~i~~~~~~~~  194 (337)
T 1gxr_A          135 ---AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL----VRQF------------QGHTDGASCIDISND  194 (337)
T ss_dssp             ---EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEE------------CCCSSCEEEEEECTT
T ss_pred             ---eecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----eeee------------ecccCceEEEEECCC
Confidence               1456788999999999998 8999999999999999988764    2332            345578999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +++|++++. +.|++||++. ++.+..+.. ...               +.+++|+|++++|++++.|+.|++||+.++.
T Consensus       195 ~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          195 GTKLWTGGLDNTVRSWDLRE-GRQLQQHDF-TSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTT-TEEEEEEEC-SSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             CCEEEEEecCCcEEEEECCC-CceEeeecC-CCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence            999999875 9999999986 665555432 221               4589999999999999999999999998763


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY  509 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~  509 (513)
                        ...+..|..++..+.|+|++++|++++.||.|++   |+....... ....|...|.+++|+|++++|++++ ++.+.
T Consensus       258 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  331 (337)
T 1gxr_A          258 --KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA---WRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             --EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE---EETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             --eEEEcCCccceeEEEECCCCCEEEEecCCCcEEE---EECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEE
Confidence              3567889999999999999999999999999999   332211111 2345789999999999999999877 66688


Q ss_pred             EEe
Q 010287          510 MYY  512 (513)
Q Consensus       510 i~~  512 (513)
                      +|+
T Consensus       332 iw~  334 (337)
T 1gxr_A          332 VYE  334 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-37  Score=322.76  Aligned_cols=330  Identities=16%  Similarity=0.204  Sum_probs=261.7

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       ...+.+|.         
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~---------   55 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE---------   55 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS---------
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC---------
Confidence            3568999999999999999999999999999999876553                       34567787         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+|++++.||.|++||+.+++....                                      
T Consensus        56 ---~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~--------------------------------------   92 (814)
T 3mkq_A           56 ---TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------   92 (814)
T ss_dssp             ---SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred             ---CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--------------------------------------
Confidence               8899999976  777999999999999999988764332                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|...|.+++|+|++++|+++ .||.|++||++++.....
T Consensus        93 --------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             --------------------------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence                                                  34677889999999999999998 799999999987644433


Q ss_pred             ecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                             .+.+|...|.+++|+| ++ ..|++++.||.|++||++++...    ..+..           .+...+.+++
T Consensus       135 -------~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-----------~~~~~v~~~~  191 (814)
T 3mkq_A          135 -------TFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT-----------GQERGVNYVD  191 (814)
T ss_dssp             -------EEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC-----------CCTTCCCEEE
T ss_pred             -------EEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec-----------CCCCCEEEEE
Confidence                   4567899999999999 66 89999999999999999876542    22221           2226799999


Q ss_pred             Eee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          348 FAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       348 ~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      |+|  ++.+|++++. +.|++||+.. ++.+..+..|...               |.+++|+|++++|++++.||.|++|
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~v~vw  255 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIW  255 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            999  9999999876 9999999986 7777888777654               4589999999999999999999999


Q ss_pred             ecCCCCccceeecCCCCceeEEEEcCCCCc--eeeecCCCeEEEecCCCCCccc--------------------------
Q 010287          425 GCSEGSAESTTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADNSALD--------------------------  476 (513)
Q Consensus       425 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~~~~--------------------------  476 (513)
                      |+.++ .....+..+..++..++++|++..  +++++.++.+.+..........                          
T Consensus       256 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  334 (814)
T 3mkq_A          256 NSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR  334 (814)
T ss_dssp             ETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred             ECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence            99987 455788888999999999999873  5666555444331000000000                          


Q ss_pred             -------------cCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          477 -------------ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       477 -------------~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                                   .......+...+.+++|+|++++|++++++.+.+|.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~  383 (814)
T 3mkq_A          335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT  383 (814)
T ss_dssp             SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred             cccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence                         000011244568999999999999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.3e-38  Score=302.20  Aligned_cols=295  Identities=12%  Similarity=0.132  Sum_probs=223.6

Q ss_pred             cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...|...|+||+|+|. +.+||+|+.||.|+|||+.++...                     ....+.+|.         
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------  164 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------  164 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS---------
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC---------
Confidence            3468889999999995 679999999999999998765531                     234567888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|++|+|+|. ++.+|++++.||+|++||++++........                                   
T Consensus       165 ---~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------------------------------  205 (435)
T 4e54_B          165 ---GSITGLKFNPL-NTNQFYASSMEGTTRLQDFKGNILRVFASS-----------------------------------  205 (435)
T ss_dssp             ---CCCCEEEECSS-CTTEEEEECSSSCEEEEETTSCEEEEEECC-----------------------------------
T ss_pred             ---CCEEEEEEeCC-CCCEEEEEeCCCEEEEeeccCCceeEEecc-----------------------------------
Confidence               88999999763 467999999999999999987654322111                                   


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                             ..+...+.+++|+|++++|++| .||.|++||++. +..  
T Consensus       206 ---------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~--  243 (435)
T 4e54_B          206 ---------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL--  243 (435)
T ss_dssp             ---------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC--
T ss_pred             ---------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee--
Confidence                                                   1223447789999999999999 799999999874 222  


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                            ..+.+|...|.+++|+|++..+|++++.|+.|++||+++......    +         ....+|...|.+++|
T Consensus       244 ------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----~---------~~~~~h~~~v~~~~~  304 (435)
T 4e54_B          244 ------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----F---------LYSLPHRHPVNAACF  304 (435)
T ss_dssp             ------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC----C---------SBCCBCSSCEEECCB
T ss_pred             ------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce----E---------EEeeeccccccceeE
Confidence                  156789999999999999867899999999999999987654221    1         012457789999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-----------
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-----------  416 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------  416 (513)
                      +|++.+|++++. +.|++||+.. +.....+..|........         ....+.|+|++.++++++           
T Consensus       305 spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  374 (435)
T 4e54_B          305 SPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCTP  374 (435)
T ss_dssp             CTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred             CCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence            999999999875 9999999996 666666655543211000         012445666666555543           


Q ss_pred             -CCCcEEEEecCCCCccceeecCCCCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287          417 -YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 -~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~  466 (513)
                       .++.|++||..++........+|...|.++ +|+|++++|++|+ |+.|++
T Consensus       375 ~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i  425 (435)
T 4e54_B          375 YELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI  425 (435)
T ss_dssp             TCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence             346799999998855444456788888887 6999999999987 788999

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-39  Score=310.17  Aligned_cols=340  Identities=9%  Similarity=0.029  Sum_probs=231.3

Q ss_pred             ccccccEEEEEEcCCC---------CEEEe-------------------ecCCCcEEEEEeeCCCCCCCccCcccccccc
Q 010287           32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS   83 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g---------~~lat-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   83 (513)
                      ..+.+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++..             
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~-------------  196 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH-------------  196 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence            3457788899998876         56666                   557889999998776531             


Q ss_pred             ccCCCcceEeccccCCCCcccccccccccccceeEEEeec----CCCceEEEeecCCeEEEEEccCceeeeeeccccCCC
Q 010287           84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE  159 (513)
Q Consensus        84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~----~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~  159 (513)
                            ......+.+|.            +.|.+++|+|.    +++.+|++++.||+|++||+..+..........   
T Consensus       197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~---  255 (524)
T 2j04_B          197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC---  255 (524)
T ss_dssp             ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC---
T ss_pred             ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee---
Confidence                  11112344565            77999999885    335799999999999999997654210000000   


Q ss_pred             cccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE
Q 010287          160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS  239 (513)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  239 (513)
                                                                                   ..+. ..+.+|...|.+++
T Consensus       256 -------------------------------------------------------------~~p~-~~l~~h~~~v~sv~  273 (524)
T 2j04_B          256 -------------------------------------------------------------EKPS-LTLSLADSLITTFD  273 (524)
T ss_dssp             -------------------------------------------------------------CSCS-EEECCTTTCEEEEE
T ss_pred             -------------------------------------------------------------cCce-EEEEcCCCCEEEEE
Confidence                                                                         0000 11467889999999


Q ss_pred             eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEE--EEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287          240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      |++++ .|++| .||+|++||++++.....       .+.+|...|.++  .|+|++..+|++++.|++|++||+++++.
T Consensus       274 ~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          274 FLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             ESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             ecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            99864 78888 799999999986543221       357899999999  46776437899999999999999988664


Q ss_pred             ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287          317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND  395 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (513)
                          ...+.++..          ...|.+++|+|+++.++++++ ++|++||++. +..+..+.+|...           
T Consensus       346 ----~~~~~~~~~----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~-----------  399 (524)
T 2j04_B          346 ----TKTTVSRFR----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT-----------  399 (524)
T ss_dssp             ----HCEEEEECS----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC-----------
T ss_pred             ----ccccccccc----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc-----------
Confidence                222222210          024788999999999998775 9999999996 7777778888765           


Q ss_pred             CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-----CCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                          |++++|+|++++|++|+.||+|++||+...  .....+.     +...+..++|+|+++.+... .+..+..   +
T Consensus       400 ----V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~-~~~~~~~---~  469 (524)
T 2j04_B          400 ----ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRID-SSYEVYP---L  469 (524)
T ss_dssp             ----EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEEC-CCCCCCC----
T ss_pred             ----eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEcc-CCceecc---c
Confidence                569999999999999999999999998743  2222221     12246788999998744221 1111111   0


Q ss_pred             CCCccccCCccccccCCeeEEEEeCCCC---EEEEEcC-CcEEEEe
Q 010287          471 DNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAAS-NSLYMYY  512 (513)
Q Consensus       471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~---~la~~~~-~~~~i~~  512 (513)
                      ... ........+|...|.+++|+|+++   +||+|+. +.++||.
T Consensus       470 ~~~-g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          470 TVN-DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccC-CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            000 112234556899999999999965   8999985 7788885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-37  Score=287.54  Aligned_cols=303  Identities=14%  Similarity=0.191  Sum_probs=228.7

Q ss_pred             ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++|+|+|+ +++||||+.||+|+|||+...+..                  .......+.+|.        
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------   86 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------   86 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS--------
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC--------
Confidence            46689999999999998 689999999999999998765531                  122345678888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|  ++.+|++++.|+.|++|+................               .....+++++..+  
T Consensus        87 ----~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l--  143 (340)
T 4aow_A           87 ----HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD---------------VLSVAFSSDNRQI--  143 (340)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------------EEEEEECTTSSCE--
T ss_pred             ----CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecCCCCc---------------eeEEEEeecCccc--
Confidence                8899999954  8889999999999999999987655544332211               1133455666655  


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcc
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                ++++.++.+++|++.....      ......+|...+.+++|++++  .+++++ .|+.|++||+++.+.
T Consensus       144 ----------~s~s~d~~~~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          144 ----------VSGSRDKTIKLWNTLGVCK------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             ----------EEEETTSCEEEECTTSCEE------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred             ----------eeecCCCeEEEEEeCCCce------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence                      7788899999999754322      222346888999999998864  466777 799999999987654


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ..        .+.+|...|++++|+|++ ++|++++.||.|++||+++...    +..+..+             ..+.+
T Consensus       208 ~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~  261 (340)
T 4aow_A          208 KT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDGG-------------DIINA  261 (340)
T ss_dssp             EE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECS-------------SCEEE
T ss_pred             ee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecCC-------------ceEEe
Confidence            33        457899999999999998 8999999999999999988765    3333322             57999


Q ss_pred             EEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          346 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       346 i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      +.|+|++.+++++.++.|++||++. ...+..+..+.....      .......|++++|+|++++|++|+.||.|+|||
T Consensus       262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            9999999888888889999999985 555544433221100      000111366999999999999999999999999


Q ss_pred             cCCCC
Q 010287          426 CSEGS  430 (513)
Q Consensus       426 ~~~~~  430 (513)
                      +++|.
T Consensus       335 ~~tGt  339 (340)
T 4aow_A          335 VTIGT  339 (340)
T ss_dssp             EEC--
T ss_pred             CCCcC
Confidence            99874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-37  Score=283.59  Aligned_cols=295  Identities=15%  Similarity=0.175  Sum_probs=214.7

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ....+.+|.            +.|.+++|+|  +  +|++++.|++|++||+..+......                   
T Consensus         6 ~~~~~~~h~------------~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~-------------------   50 (330)
T 2hes_X            6 LIKSLKLYK------------EKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLID-------------------   50 (330)
T ss_dssp             EEEEEECCS------------SCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEE-------------------
T ss_pred             cceeeccCC------------CceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEE-------------------
Confidence            445678888            8899999964  4  8999999999999999865321110                   


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEe-eccccCCeEEEEeccCCCEEEEE
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                            .+ ..+|...|.+++|+|++++|++|
T Consensus        51 ------------------------------------------------------~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X           51 ------------------------------------------------------VLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             ------------------------------------------------------EECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             ------------------------------------------------------EEecCCccCCEEEEEECCCCCEEEEE
Confidence                                                                  01 12488889999999999999998


Q ss_pred             -cCCeEEEEEcCCCcce---eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          251 -DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                       .|++|++||++.....   ...    ...+.+|...|.+++|+|++ ++|++++.|+.|++||++......+.+..   
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~---  148 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDL----LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV---  148 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEE----EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE---
T ss_pred             eCCCcEEEEEcccCcCcccccee----EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE---
Confidence             7999999998643210   010    02467899999999999998 99999999999999999543211111222   


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeE
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                               +.+|...|.+++|+|++.+|++++. +.|++||... +  +++..+.+|...               |+++
T Consensus       149 ---------~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~---------------v~~~  203 (330)
T 2hes_X          149 ---------LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGT---------------VWSS  203 (330)
T ss_dssp             ---------ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEE
T ss_pred             ---------eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCc---------------EEEE
Confidence                     4556688999999999999999875 9999999875 3  466777777765               5589


Q ss_pred             EEeCC--CCEEEEEeCCCcEEEEecCCCCc-------cceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCC
Q 010287          404 CLSGD--GGRVATGSYSNLFRVFGCSEGSA-------ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS  473 (513)
Q Consensus       404 ~~s~~--~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  473 (513)
                      +|+|+  +.+|++|+.|+.|++||+..+..       ....+.. |..+|.+++|++++ +|++++.||.|++   |+..
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i---w~~~  279 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV---YEEV  279 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE---EEEE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE---EEcC
Confidence            99998  67899999999999999875421       1233444 88999999999654 8999999999999   2221


Q ss_pred             cc--ccC-CccccccC-CeeEEEEeC--CCCEEEEEc-CCcEEEEe
Q 010287          474 AL--DAN-GNAFDFSM-KLLHLAWHP--SENSIACAA-SNSLYMYY  512 (513)
Q Consensus       474 ~~--~~~-~~~~~~~~-~i~~~~~sp--~~~~la~~~-~~~~~i~~  512 (513)
                      ..  ... .....|.. .|.+++|+|  ++++||+++ ++.+++|+
T Consensus       280 ~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          280 DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             TTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             CCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence            10  001 11234666 899999999  788999887 66788886

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-36  Score=281.60  Aligned_cols=300  Identities=14%  Similarity=0.177  Sum_probs=224.2

Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEee----cCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG  165 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~----~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      +.....+.+|.            +.|++++|.+    ..++.+|++++.|++|++||+...+.....             
T Consensus        11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-------------   65 (343)
T 2xzm_R           11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-------------   65 (343)
T ss_dssp             EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-------------
T ss_pred             eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-------------
Confidence            34556788999            8999999932    136779999999999999998764311000             


Q ss_pred             CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287          166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  245 (513)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  245 (513)
                                                                             ..+ ...+.+|...|.+++|+|++.
T Consensus        66 -------------------------------------------------------~~~-~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           66 -------------------------------------------------------GIP-HKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             -------------------------------------------------------EEE-EEEECCCSSCEEEEEECSSTT
T ss_pred             -------------------------------------------------------ccc-cchhccCCCceEEEEECCCCC
Confidence                                                                   001 112468999999999999999


Q ss_pred             EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287          246 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  324 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  324 (513)
                      ++++| .|++|++||+++++...        .+.+|...|.+++|+|++ ++|++++.|+.|++||+.....     ...
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~--------~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-----~~~  155 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-----FSS  155 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEE--------EEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-----EEC
T ss_pred             EEEEEcCCCcEEEEECCCCcEEE--------EEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-----eee
Confidence            99998 79999999999776443        457899999999999998 8999999999999999874221     111


Q ss_pred             ccccCCCCccccccccccEEEEEEeecC----------CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNG----------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE  393 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~----------~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      .         ...+|...|.+++|+|++          .++++++. +.|++||..  ......+..|...         
T Consensus       156 ~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~---------  215 (343)
T 2xzm_R          156 A---------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESN---------  215 (343)
T ss_dssp             C---------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSC---------
T ss_pred             e---------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCcccc---------
Confidence            1         023466789999999987          68888775 999999954  5566677777654         


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CC
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--AD  471 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~  471 (513)
                            |.+++|+|++++|++|+.||.|++||+.........+ .+...+.+++|+|++++++++ .|+.|++...  ..
T Consensus       216 ------v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          216 ------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS  287 (343)
T ss_dssp             ------EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred             ------ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence                  5599999999999999999999999996543333333 345579999999999888755 5778888211  11


Q ss_pred             CCc-cccC-------CccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          472 NSA-LDAN-------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       472 ~~~-~~~~-------~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ... ..+.       ....+|...|.+++|+|++++||+|+ ++.+++|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            110 0011       01125778899999999999999887 66777885

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-38  Score=323.56  Aligned_cols=426  Identities=12%  Similarity=0.049  Sum_probs=265.7

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (513)
                      .....|++..  ++.  .....|.+.|++++|+|++++|++|+.||.|++||+.+++..                  .+.
T Consensus        79 ~~v~lWd~~~--~~~--~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~------------------~~~  136 (902)
T 2oaj_A           79 DTVYVLSLYS--QKV--LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS------------------SFK  136 (902)
T ss_dssp             CEEEEEETTT--CSE--EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE------------------EEE
T ss_pred             CeEEEEECCC--CcE--EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc------------------cce
Confidence            3455677754  111  122347789999999999999999999999999998765421                  000


Q ss_pred             E-----e-ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287           92 Y-----K-TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG  165 (513)
Q Consensus        92 ~-----~-~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      .     . ..+.+|.            +.|.+++|+|. ++..+++++.|+.| +||+++++....+..+..++......
T Consensus       137 i~~~~~~~~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~  202 (902)
T 2oaj_A          137 LDNLQKSSFFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF  202 (902)
T ss_dssp             ECCHHHHHTCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred             eccccccccccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence            0     0 2346677            88999999762 23589999999999 99999988766655442211100000


Q ss_pred             ---CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeec-----------cc
Q 010287          166 ---PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAH-----------AH  231 (513)
Q Consensus       166 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~h  231 (513)
                         ...........++|+|+|..+            ++++.++.|++||+...+.............           .|
T Consensus       203 ~~~~~~~h~~~V~~v~fspdg~~l------------asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~  270 (902)
T 2oaj_A          203 SEKTNEKRTPKVIQSLYHPNSLHI------------ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTN  270 (902)
T ss_dssp             CCCTTSCBCCCEEEEEECTTSSEE------------EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSC
T ss_pred             ccccccccCCCeEEEEEcCCCCEE------------EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccc
Confidence               000001223478899999987            8889999999999876543211000000000           12


Q ss_pred             cCCeEEEEecc----CC-CEEEEE--------------------------------------------------------
Q 010287          232 DYHINSISNNS----DG-ETFISA--------------------------------------------------------  250 (513)
Q Consensus       232 ~~~v~~~~~~~----~~-~~l~s~--------------------------------------------------------  250 (513)
                      ...|.+++|++    ++ ..|++|                                                        
T Consensus       271 ~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  350 (902)
T 2oaj_A          271 AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILP  350 (902)
T ss_dssp             CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEE
T ss_pred             cCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEE
Confidence            33466666632    22 233333                                                        


Q ss_pred             ---------------------cCCeEEEEEcCCCcceeeec---------------------------------ccCccc
Q 010287          251 ---------------------DDLRINLWNLEISNQSFNIV---------------------------------DVKPAN  276 (513)
Q Consensus       251 ---------------------~d~~i~vwd~~~~~~~~~~~---------------------------------~~~~~~  276 (513)
                                           .|+.|++|++.++.......                                 ......
T Consensus       351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~  430 (902)
T 2oaj_A          351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL  430 (902)
T ss_dssp             CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred             CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc
Confidence                                 23444444443221111000                                 000011


Q ss_pred             cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287          277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  356 (513)
Q Consensus       277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~  356 (513)
                      +.+|...+.+++|+|++ ++|++|+.|++|++||+.++....  ...+...-   .+..-.+|...|.+++|+|++++||
T Consensus       431 l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~LA  504 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLELA  504 (902)
T ss_dssp             CCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEEE
T ss_pred             ccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeEE
Confidence            23344444455567888 899999999999999998874311  11111000   0000126778999999999999999


Q ss_pred             EEeC-CeEEEEEccCCCCC---------------------------------------------eeeeeccccccccccc
Q 010287          357 SRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLCD  390 (513)
Q Consensus       357 ~~~~-~~v~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~  390 (513)
                      +|+. ++|+|||+.. ++.                                             +..+.+|..       
T Consensus       505 sgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~-------  576 (902)
T 2oaj_A          505 VSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG-------  576 (902)
T ss_dssp             EEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC-------
T ss_pred             EEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC-------
Confidence            9885 9999999985 321                                             222223332       


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc----eeec-CCCCceeEEEEc-----CCC---Cceee
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRPL  457 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~~  457 (513)
                              .|++++|+||| +||+|+.|++|++||+++...+.    ..+. +|...|++++|+     |||   ++|++
T Consensus       577 --------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s  647 (902)
T 2oaj_A          577 --------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC  647 (902)
T ss_dssp             --------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred             --------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence                    36799999999 99999999999999987653221    2343 899999999999     885   89999


Q ss_pred             ecCCCeEEEecCCCC---CccccCCcccc-----ccCCeeEEE-Ee----------------------CCCCEEEEEcCC
Q 010287          458 GSLSGVVRRVKGADN---SALDANGNAFD-----FSMKLLHLA-WH----------------------PSENSIACAASN  506 (513)
Q Consensus       458 ~~~d~~i~~~~~~~~---~~~~~~~~~~~-----~~~~i~~~~-~s----------------------p~~~~la~~~~~  506 (513)
                      |+.|+.|++   |++   ..........+     |.++|.+++ |+                      +++.+||+ ++.
T Consensus       648 gs~D~tv~~---wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~  723 (902)
T 2oaj_A          648 GTDMGEVIT---YKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFD  723 (902)
T ss_dssp             EETTSEEEE---EEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSS
T ss_pred             EecCCcEEE---EEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-ecc
Confidence            999999999   332   11111112222     357787777 77                      45555554 488


Q ss_pred             cEEEEe
Q 010287          507 SLYMYY  512 (513)
Q Consensus       507 ~~~i~~  512 (513)
                      .++||+
T Consensus       724 ~ir~~~  729 (902)
T 2oaj_A          724 DIRLIT  729 (902)
T ss_dssp             EEEEEC
T ss_pred             ceEEEe
Confidence            999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.5e-37  Score=277.41  Aligned_cols=258  Identities=13%  Similarity=0.217  Sum_probs=199.1

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|++++|+|+|++||+|+.|++|+||++.+...                     +....+.+|.          
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~----------   53 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE----------   53 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence            457999999999999999999999999999999864321                     1235678898          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        +.|++++|+|..++.+|++++.|++|++||+++++.....                                      
T Consensus        54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~--------------------------------------   93 (297)
T 2pm7_B           54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA--------------------------------------   93 (297)
T ss_dssp             --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE--------------------------------------
T ss_pred             --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE--------------------------------------
Confidence              8899999975444679999999999999999876421110                                      


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                          .+.+|...|.+++|+|+  +.+|+++ .|+.|++||+++.....
T Consensus        94 ------------------------------------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           94 ------------------------------------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             ------------------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             ------------------------------------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence                                                13467888999999997  8899998 79999999998653221


Q ss_pred             eecccCccccccccCCeEEEEEeCCC------------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      .      ..+.+|...|.+++|+|++            ..+|++|+.|+.|++||++++.........            
T Consensus       138 ~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~------------  199 (297)
T 2pm7_B          138 P------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST------------  199 (297)
T ss_dssp             C------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE------------
T ss_pred             e------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE------------
Confidence            1      1457899999999999973            268999999999999999875421111122            


Q ss_pred             cccccccEEEEEEeecC---CEEEEEeC-CeEEEEEccCCCCCe--eee--ecccccccccccccccCCccceeeEEEeC
Q 010287          336 FTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~---~~l~~~~~-~~v~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      +.+|...|.+++|+|++   .+|++++. ++|++||++......  ..+  ..+..               .|++++|+|
T Consensus       200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~  264 (297)
T 2pm7_B          200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASWSL  264 (297)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEECS
T ss_pred             ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEECC
Confidence            45677899999999984   78998875 999999998522111  112  12221               256899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCC
Q 010287          408 DGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      ++++|++++.|+.|++|+...
T Consensus       265 ~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEECT
T ss_pred             CCCEEEEEcCCCcEEEEEECC
Confidence            999999999999999999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-36  Score=308.25  Aligned_cols=289  Identities=15%  Similarity=0.225  Sum_probs=227.8

Q ss_pred             ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++++|+|+ +++|++|+.||+|+||++......                  .......+.+|.        
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------  430 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------  430 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS--------
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC--------
Confidence            35589999999999997 579999999999999998754321                  112334577888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|  ++.+|++++.|++|++||+.++.....                                     
T Consensus       431 ----~~v~~v~~s~--~g~~l~sgs~Dg~v~vwd~~~~~~~~~-------------------------------------  467 (694)
T 3dm0_A          431 ----HFVEDVVLSS--DGQFALSGSWDGELRLWDLAAGVSTRR-------------------------------------  467 (694)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----CcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcceeE-------------------------------------
Confidence                8899999955  788999999999999999988754322                                     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             +.+|...|.+++|+|++++|+++ .|++|++||..... ..
T Consensus       468 ---------------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~  507 (694)
T 3dm0_A          468 ---------------------------------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KY  507 (694)
T ss_dssp             ---------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EE
T ss_pred             ---------------------------------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ce
Confidence                                                   35788899999999999999998 79999999986432 22


Q ss_pred             eecccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  346 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  346 (513)
                      .+.    ....+|...|.+++|+|++. ..+++++.|+.|++||+++++.    ...            +.+|.+.|.++
T Consensus       508 ~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~------------~~~h~~~v~~v  567 (694)
T 3dm0_A          508 TIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RST------------LAGHTGYVSTV  567 (694)
T ss_dssp             EEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEE------------ECCCSSCEEEE
T ss_pred             eec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEE------------EcCCCCCEEEE
Confidence            211    13357889999999999852 5899999999999999987654    222            45566899999


Q ss_pred             EEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          347 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       347 ~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      +|+|++++|++|+. +.|++||+.+ ++.+..+..+..                +.+++|+|++.+|++++ ++.|++||
T Consensus       568 ~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd  629 (694)
T 3dm0_A          568 AVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWD  629 (694)
T ss_dssp             EECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence            99999999999875 9999999986 666655543321                45899999999888766 45699999


Q ss_pred             cCCCCccceeecCC-------------------CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          426 CSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +.++. ....+..+                   ...+.++.|+|++++|++|+.||.|++
T Consensus       630 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          630 LESKS-IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             TTTTE-EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCC-ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            99773 22333221                   123678999999999999999999999

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=279.76  Aligned_cols=289  Identities=14%  Similarity=0.186  Sum_probs=236.3

Q ss_pred             cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ....+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       ...+.+|.        
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~--------   74 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------------LGTLDGHT--------   74 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------------EEEECCCS--------
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------------hhhhhhcC--------
Confidence            35678999999999999999999999999999999876553                       35577888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|  ++.+|++++.|+.|++||+.+++.....                                    
T Consensus        75 ----~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------  112 (369)
T 3zwl_B           75 ----GTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCVATW------------------------------------  112 (369)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEEE------------------------------------
T ss_pred             ----CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEe------------------------------------
Confidence                8899999965  7789999999999999999887644321                                    


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC-----CeEEEEEcCC
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEI  262 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~vwd~~~  262 (513)
                                                               .+...+.+++|+|++++|+++ .+     +.|++||+..
T Consensus       113 -----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B          113 -----------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             -----------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             -----------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence                                                     245669999999999999998 67     9999999987


Q ss_pred             CcceeeecccC---ccccccccC--CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc-ccccccceeeccccCCCCcccc
Q 010287          263 SNQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFF  336 (513)
Q Consensus       263 ~~~~~~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ......+....   ...+..|..  .+.+++|+|++ ++|++++.||.|++||+++. ..    ...            +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~  214 (369)
T 3zwl_B          152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY----VDS------------I  214 (369)
T ss_dssp             CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE----EEE------------E
T ss_pred             CccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe----EEE------------E
Confidence            65432221110   123344555  89999999998 89999999999999999873 32    222            2


Q ss_pred             ccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287          337 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG  415 (513)
Q Consensus       337 ~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  415 (513)
                      ..|...|.+++|+|++.+|++++. +.|++||+++ ++.+..+.... .               +..++|+|++++++++
T Consensus       215 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDC-P---------------LNTAVITPLKEFIILG  277 (369)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSS-C---------------EEEEEECSSSSEEEEE
T ss_pred             ecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecCCC-C---------------ceeEEecCCCceEEEe
Confidence            345578999999999999999875 9999999996 77777665322 2               4589999999999999


Q ss_pred             eCCC--------------cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          416 SYSN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       416 ~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +.++              .+++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL  341 (369)
T ss_dssp             ECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence            9888              8999999987 455788899999999999999999999999999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-35  Score=274.96  Aligned_cols=285  Identities=11%  Similarity=0.161  Sum_probs=229.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++|++++ ||.|++|++.+.+...                  ........+|.         
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~------------------~~~~~~~~~~~---------   97 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDCLNRD---------   97 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEECSCTT---------
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee------------------eeecccccCCC---------
Confidence            3457999999999999999999999 9999999987654310                  00111122566         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.++++++.|+.|++||+.+++.....                                     
T Consensus        98 ---~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------------------------------------  135 (337)
T 1gxr_A           98 ---NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKA-------------------------------------  135 (337)
T ss_dssp             ---SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEE-------------------------------------
T ss_pred             ---CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceee-------------------------------------
Confidence               8899999965  7789999999999999999876522211                                     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                           .+..|...|.+++|+|++++|+++ .|+.|++||+++++... 
T Consensus       136 -------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-  177 (337)
T 1gxr_A          136 -------------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-  177 (337)
T ss_dssp             -------------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             -------------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-
Confidence                                                 134677789999999999999998 79999999998765432 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+..|...|.+++|+|++ .+|++++.||.|++||+++++..    ..+.             +...+.+++|
T Consensus       178 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~-------------~~~~v~~~~~  232 (337)
T 1gxr_A          178 -------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD-------------FTSQIFSLGY  232 (337)
T ss_dssp             -------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE-------------CSSCEEEEEE
T ss_pred             -------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec-------------CCCceEEEEE
Confidence                   456789999999999998 89999999999999999887642    2221             2367999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|+++++++++. +.|++||+.. .+ ...+..|...               +.+++|+|++++|++++.||.|++||+.
T Consensus       233 s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          233 CPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            999999999875 9999999985 43 3344455443               5589999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++...  ....|..++.++.|+|++++|++++.||.|++
T Consensus       296 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  332 (337)
T 1gxr_A          296 YGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             TCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence            87443  33457889999999999999999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.2e-36  Score=287.62  Aligned_cols=311  Identities=11%  Similarity=0.200  Sum_probs=244.7

Q ss_pred             ccccccccE-EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V-~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.| +|  ++++|++|++|+.||.|++||+.+++.                       ...+.+|.        
T Consensus       113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~--------  159 (445)
T 2ovr_B          113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC-----------------------LRTLVGHT--------  159 (445)
T ss_dssp             EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE-----------------------EEECCCCS--------
T ss_pred             EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE-----------------------EEEEcCCC--------
Confidence            456788865 55  455689999999999999999876653                       35677888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+    +..+++++.||+|++||+.+++....                                     
T Consensus       160 ----~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------  194 (445)
T 2ovr_B          160 ----GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT-------------------------------------  194 (445)
T ss_dssp             ----SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE-------------------------------------
Confidence                889999994    35999999999999999988764432                                     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             +.+|...|.+++|+  ++.+++| .|+.|++||+++++...
T Consensus       195 ---------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~  233 (445)
T 2ovr_B          195 ---------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH  233 (445)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             ---------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence                                                   24677889999995  5678887 79999999999766443


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                              .+.+|...|.++.+  ++ ..+++++.||.|++||++++..    ...+            .+|...|.++.
T Consensus       234 --------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~------------~~~~~~v~~~~  286 (445)
T 2ovr_B          234 --------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETC----LHTL------------QGHTNRVYSLQ  286 (445)
T ss_dssp             --------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEE----EEEE------------CCCSSCEEEEE
T ss_pred             --------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcE----eEEe------------cCCCCceEEEE
Confidence                    45678999999999  55 7899999999999999988764    3333            34557899999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |  ++.++++++. +.|++||+++ ++.+..+..|...                 ..++.+++++|++|+.||.|++||+
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~vwd~  346 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL-----------------TSGMELKDNILVSGNADSTVKIWDI  346 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC-----------------EEEEEEETTEEEEEETTSCEEEEET
T ss_pred             E--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc-----------------EEEEEEeCCEEEEEeCCCeEEEEEC
Confidence            8  7889999875 9999999996 8888888777654                 2234446779999999999999999


Q ss_pred             CCCCccceeecC---CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-----cccccCCeeEEEEeCCCC
Q 010287          427 SEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-----AFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       427 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~sp~~~  498 (513)
                      .++. ....+..   |..++.++.++  ++++++|+.||.|++   |+....+....     ...|...|.+++|+|++.
T Consensus       347 ~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i---wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          347 KTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL---WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             TTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE---EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             CCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE---EECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            8874 4456654   88899999995  579999999999999   33221111111     135788999999999999


Q ss_pred             EEEEEcCCc-----EEEEe
Q 010287          499 SIACAASNS-----LYMYY  512 (513)
Q Consensus       499 ~la~~~~~~-----~~i~~  512 (513)
                      +||+++.++     +.+|+
T Consensus       421 ~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEE
T ss_pred             EEEEcccCCCCccEEEEEE
Confidence            999999766     77775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.6e-36  Score=282.52  Aligned_cols=303  Identities=14%  Similarity=0.166  Sum_probs=233.6

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .|.++|++++|+|++++||+|+.||.|+||++.+++.                     .....+.+|.            
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------   52 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------   52 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence            4889999999999999999999999999999876541                     1335567788            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|+|  ++.+|++++.|+.|++||+.+++......                                       
T Consensus        53 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------------------   91 (372)
T 1k8k_C           53 GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV---------------------------------------   91 (372)
T ss_dssp             SCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred             CcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence            8899999966  77899999999999999998876433211                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         ...|...|.+++|+|++++|+++ .|+.|++||++......... 
T Consensus        92 -----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-  135 (372)
T 1k8k_C           92 -----------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-  135 (372)
T ss_dssp             -----------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-
T ss_pred             -----------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-
Confidence                                               23566789999999999999998 79999999998765321110 


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee-ecc-ccCCCCccccccccccEEEEEEe
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-FEE-QEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                         .....|...|.+++|+|++ .+|++++.||.|++||++........... +.. .........+.+|...|.+++|+
T Consensus       136 ---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (372)
T 1k8k_C          136 ---HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  211 (372)
T ss_dssp             ---EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             ---eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence               1235678999999999998 89999999999999997643221100000 000 00001112244677899999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |++++|++++. +.|++||++. ++.+..+..|...               +.+++|+|++++|++| .|+.|++|++..
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999875 9999999996 7888888777654               4589999999988887 899999999987


Q ss_pred             --CCc-------------------------------cc------eee-cCCCCceeEEEEc-CCC---CceeeecCCCeE
Q 010287          429 --GSA-------------------------------ES------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSGVV  464 (513)
Q Consensus       429 --~~~-------------------------------~~------~~~-~~~~~~v~~~~~~-~~~---~~l~~~~~d~~i  464 (513)
                        +..                               ..      ..+ .+|..+|.++++. +++   .+|++|+.||.|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i  354 (372)
T 1k8k_C          275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM  354 (372)
T ss_dssp             TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence              310                               00      223 4899999999865 666   999999999999


Q ss_pred             EE
Q 010287          465 RR  466 (513)
Q Consensus       465 ~~  466 (513)
                      ++
T Consensus       355 ~~  356 (372)
T 1k8k_C          355 SI  356 (372)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-36  Score=283.07  Aligned_cols=294  Identities=15%  Similarity=0.218  Sum_probs=220.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|+|  ++.+|++++ |+++++|++.+++.......+....                     .+..        
T Consensus        65 ~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------~~~~--------  112 (393)
T 1erj_A           65 SVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------KDPE--------  112 (393)
T ss_dssp             SCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred             CEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------cccc--------
Confidence            8899999955  788888865 7899999999887654432211000                     0000        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                   .                ........+...|.+++|+|++++|++| .|+.|++||+++++...    
T Consensus       113 -------------~----------------~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~----  159 (393)
T 1erj_A          113 -------------N----------------LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM----  159 (393)
T ss_dssp             -------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred             -------------c----------------ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE----
Confidence                         0                0000012334458999999999999998 79999999998665432    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-  350 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-  350 (513)
                          .+.+|...|.+++|+|++ ..|++++.|+.|++||+++++.    ...+.             +...+.+++|+| 
T Consensus       160 ----~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~-------------~~~~v~~~~~~~~  217 (393)
T 1erj_A          160 ----ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC----SLTLS-------------IEDGVTTVAVSPG  217 (393)
T ss_dssp             ----EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEE-------------CSSCEEEEEECST
T ss_pred             ----EEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCee----EEEEE-------------cCCCcEEEEEECC
Confidence                457899999999999999 8999999999999999988764    22222             225699999999 


Q ss_pred             cCCEEEEEeC-CeEEEEEccCCCCCeeeee-------cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287          351 NGRHILSRDY-MTLKLWDINMDSGPVATFQ-------VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR  422 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  422 (513)
                      ++++|++|+. +.|++||+++ +..+..+.       +|...               |++++|+|++++|++|+.|+.|+
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDS---------------VYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSC---------------EEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCC---------------EEEEEECCCCCEEEEEeCCCEEE
Confidence            8999999875 9999999986 66665552       23322               56999999999999999999999


Q ss_pred             EEecCCCCc-----------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEE
Q 010287          423 VFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL  491 (513)
Q Consensus       423 vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  491 (513)
                      +||+.+...           ....+.+|...|.+++++|++++|++|+.|+.|++   |+...........+|...|.++
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i---wd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF---WDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE---EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE---EECCCCeEEEEECCCCCCEEEE
Confidence            999976421           22466789999999999999999999999999999   4433222223344689999999


Q ss_pred             EEeC------CCCEEEEEc-CCcEEEEe
Q 010287          492 AWHP------SENSIACAA-SNSLYMYY  512 (513)
Q Consensus       492 ~~sp------~~~~la~~~-~~~~~i~~  512 (513)
                      +|+|      ++++||+++ ++.++||+
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            9986      688999887 67788986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.1e-37  Score=280.04  Aligned_cols=258  Identities=15%  Similarity=0.187  Sum_probs=195.7

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|++++|+|+|++||+|+.|++|+|||+.++..                     .....+.+|.          
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~----------   57 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE----------   57 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence            458999999999999999999999999999999876532                     1335678898          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|.+++|+|..++.+|++++.|++|++||++++......                                      
T Consensus        58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~--------------------------------------   97 (316)
T 3bg1_A           58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH--------------------------------------   97 (316)
T ss_dssp             --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred             --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence              8899999975434679999999999999999875422110                                      


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                          .+.+|...|.+++|+|+  +.+|++| .|++|++||++......
T Consensus        98 ------------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           98 ------------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             ------------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             ------------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence                                                13578888999999997  7899998 79999999998653221


Q ss_pred             eecccCccccccccCCeEEEEEeCCC----------------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      ..     ..+.+|...|.+++|+|+.                ..+|++++.|+.|++||++..... .....        
T Consensus       142 ~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~--------  207 (316)
T 3bg1_A          142 VK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQK--------  207 (316)
T ss_dssp             EC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEEC--------
T ss_pred             ee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeee--------
Confidence            10     1456788999999999972                168999999999999998654210 00112        


Q ss_pred             CccccccccccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCC--C-CeeeeecccccccccccccccCCccceeeE
Q 010287          332 TRSFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS--G-PVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                          +.+|...|.+++|+|++    .+|++++. ++|++|++....  . ....+..|...               |+++
T Consensus       208 ----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~~v  268 (316)
T 3bg1_A          208 ----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VWHV  268 (316)
T ss_dssp             ----CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EEEE
T ss_pred             ----cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EEEE
Confidence                45677899999999986    78998875 999999987511  1 12233334332               5699


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          404 CLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       404 ~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      +|+|++++|++++.|+.|++|+...
T Consensus       269 ~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          269 SWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEECC
Confidence            9999999999999999999999763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.5e-36  Score=281.78  Aligned_cols=300  Identities=13%  Similarity=0.176  Sum_probs=227.5

Q ss_pred             ccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++++|+|++ ++||+|+.||.|+|||+.+.+..                     ......+|.        
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~--------  118 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG--------  118 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT--------
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC--------
Confidence            345799999999999998 99999999999999998765531                     222334677        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|. ++.+|++++.|+.|++||+.+........                                   
T Consensus       119 ----~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------------  158 (383)
T 3ei3_B          119 ----DAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVIQVFAK-----------------------------------  158 (383)
T ss_dssp             ----CBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEEEEEEC-----------------------------------
T ss_pred             ----CceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCceEEEec-----------------------------------
Confidence                88999999652 45799999999999999998643222110                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                             ...|...|.+++|+|++++|+++ .|+.|++||++ ++...
T Consensus       159 ---------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~  198 (383)
T 3ei3_B          159 ---------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF  198 (383)
T ss_dssp             ---------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE
T ss_pred             ---------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE
Confidence                                                   12455779999999999999998 79999999995 33322


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                              .+..|...|.+++|+|++..+|++++.|+.|++||+++..........+             +|...|.+++
T Consensus       199 --------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~v~~~~  257 (383)
T 3ei3_B          199 --------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------------PHEKPVNAAY  257 (383)
T ss_dssp             --------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------------ECSSCEEEEE
T ss_pred             --------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------------cCCCceEEEE
Confidence                    4577999999999999993399999999999999998854322212222             3557899999


Q ss_pred             Eee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc----cccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          348 FAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       348 ~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      |+| ++.+|++++. +.|++||+++ ++....+..|......    +...+..  -..+..++|+|++++  +++.|+.|
T Consensus       258 ~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~s~dg~~--s~s~d~~i  332 (383)
T 3ei3_B          258 FNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHP--MYDLIVAGRYPDDQL--LLNDKRTI  332 (383)
T ss_dssp             ECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECS--SSSEEEEECBCCTTT--CTTCCCCE
T ss_pred             EcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccC--CCCceEEEecCCccc--ccCCCCeE
Confidence            999 9999999875 9999999997 6776777665432110    0000000  012335777788877  78899999


Q ss_pred             EEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          422 RVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++||+.+++ ....+.+  +...+..++|+|++++|++|+ |+.|++
T Consensus       333 ~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i  377 (383)
T 3ei3_B          333 DIYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI  377 (383)
T ss_dssp             EEEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred             EEEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence            999999874 4466665  456777789999999999997 999999

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=289.20  Aligned_cols=321  Identities=12%  Similarity=0.187  Sum_probs=242.9

Q ss_pred             cccccccccceeccc-cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287           12 AQPLEWKFSQVFGER-TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~-~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (513)
                      .....|++...  +. .......|...|++++|+|++++||+|+.||.|++|++.+...                   ..
T Consensus        45 ~~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~  103 (416)
T 2pm9_A           45 SSLELWSLLAA--DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AI  103 (416)
T ss_dssp             CCCEEEESSSG--GGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CC
T ss_pred             CeEEEEEccCC--CCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cc
Confidence            35667877652  21 1334557899999999999999999999999999999876221                   01


Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .....+.+|.            ..|.+++|+|. ++.+|++++.|+.|++||+.+++........               
T Consensus       104 ~~~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---------------  155 (416)
T 2pm9_A          104 NSMARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTP---------------  155 (416)
T ss_dssp             CEEEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCC---------------
T ss_pred             cchhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccc---------------
Confidence            1335567788            88999999763 1679999999999999999876411000000               


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFIS  249 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s  249 (513)
                                                  +                        .......|...|.+++|+|+ +.+|++
T Consensus       156 ----------------------------~------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          156 ----------------------------L------------------------TPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             ----------------------------B------------------------CCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             ----------------------------c------------------------ccccccCCCCCeeEEEeCCCCCcEEEE
Confidence                                        0                        00002467788999999998 788888


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEEEcCCcccccccceeec
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      + .|+.|++||+++++....+..  .....+|...|.+++|+|++..++++++.|+   .|++||++++...   ...  
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~--  256 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSY--TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT--  256 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECC--CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC--
T ss_pred             EcCCCCEEEEECCCCCcceEEec--cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE--
Confidence            8 799999999997665433210  0111234788999999999767999999999   9999999886321   122  


Q ss_pred             cccCCCCccccc-cccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          326 EQEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       326 ~~~~~~~~~~~~-~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                                +. +|...|.+++|+| ++.+|++++. +.|++||+++ ++++..+..|...               |++
T Consensus       257 ----------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~---------------v~~  310 (416)
T 2pm9_A          257 ----------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNW---------------CFK  310 (416)
T ss_dssp             ----------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSC---------------CCC
T ss_pred             ----------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCc---------------eEE
Confidence                      23 5668899999999 8999999875 9999999997 8888888887765               458


Q ss_pred             EEEeCCC-CEEEEEeCCCcEEEEecCCCCcccee----------------------------------ecCCCCceeEEE
Q 010287          403 CCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQV  447 (513)
Q Consensus       403 ~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------------------~~~~~~~v~~~~  447 (513)
                      ++|+|++ .+|++++.|+.|++|++.+.......                                  ...+..++..++
T Consensus       311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (416)
T 2pm9_A          311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH  390 (416)
T ss_dssp             EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence            9999999 89999999999999999876433211                                  111667888999


Q ss_pred             EcCCCCceeeecCCCeEEE
Q 010287          448 QTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~  466 (513)
                      |+|+|++|++++.|+.|++
T Consensus       391 ~s~dg~~la~~~~d~~v~~  409 (416)
T 2pm9_A          391 WAFGGKLVQITPDGKGVSI  409 (416)
T ss_dssp             EETTTEEECBCTTSSCBCC
T ss_pred             EeeCCeEEEEeCCCCeEEE
Confidence            9999999999999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-35  Score=281.75  Aligned_cols=299  Identities=10%  Similarity=0.118  Sum_probs=230.5

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|  ++||+|+.||.|+||++.+.+..                 ..+.....+.+|.         
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------   62 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------   62 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT---------
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC---------
Confidence            3457999999999999  79999999999999998776521                 1112234556777         


Q ss_pred             cccccceeEEEeec--CCC---ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          110 EIEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       110 ~~~~~i~~i~~~~~--~~~---~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                         ..|.+++|+|.  .++   .+|++++.|+.|++|++.+++....                                 
T Consensus        63 ---~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~---------------------------------  106 (397)
T 1sq9_A           63 ---SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK---------------------------------  106 (397)
T ss_dssp             ---TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC---------------------------------
T ss_pred             ---CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc---------------------------------
Confidence               88999999873  126   7999999999999999987642000                                 


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccc-----cCCeEEEEec----cCCCE-EEEE-cCC
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAH-----DYHINSISNN----SDGET-FISA-DDL  253 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~-~d~  253 (513)
                                                            .....+..|     ...|.+++|+    |++++ |+++ .|+
T Consensus       107 --------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  148 (397)
T 1sq9_A          107 --------------------------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG  148 (397)
T ss_dssp             --------------------------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred             --------------------------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence                                                  000012344     4779999999    99999 9988 799


Q ss_pred             eEEEEEcCC------CcceeeecccCc-ccc-------ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc
Q 010287          254 RINLWNLEI------SNQSFNIVDVKP-ANM-------EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT  319 (513)
Q Consensus       254 ~i~vwd~~~------~~~~~~~~~~~~-~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  319 (513)
                      .|++||+++      .....    ..+ ..+       ..|...|.+++|+|++  +|++++.||.|++||+++++.   
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~---  219 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLN----WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP---  219 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTC----CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE---
T ss_pred             cEEEEeCCccccccccceee----ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce---
Confidence            999999986      33322    000 022       4478899999999997  899999999999999988654   


Q ss_pred             cceeeccccCCCCccccccc---cccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeec------------
Q 010287          320 HSKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV------------  380 (513)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~------------  380 (513)
                       +..+..         ..+|   ...|.+++|+|++++|++++ +   +.|++||++. ++.+..+..            
T Consensus       220 -~~~~~~---------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          220 -LYNFES---------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             -EEEEEC---------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCB
T ss_pred             -eEEEec---------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCccccccccccc
Confidence             333332         0114   57899999999999999865 6   8999999996 777777776            


Q ss_pred             -ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec------CC--------------
Q 010287          381 -HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE------AS--------------  439 (513)
Q Consensus       381 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~--------------  439 (513)
                       |...               |.+++|+|++++|++++.||.|++||+.++ .....+.      .|              
T Consensus       289 ~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  352 (397)
T 1sq9_A          289 AHSSW---------------VMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSL  352 (397)
T ss_dssp             SBSSC---------------EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             ccCCc---------------EEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccc
Confidence             4433               569999999999999999999999999987 4456677      77              


Q ss_pred             -CCceeEEEEcCCC----------CceeeecCCCeEEE
Q 010287          440 -KNPMRRQVQTPSR----------PSRPLGSLSGVVRR  466 (513)
Q Consensus       440 -~~~v~~~~~~~~~----------~~l~~~~~d~~i~~  466 (513)
                       ..+|..++|+|++          ++|++++.||.|++
T Consensus       353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             cCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence             8999999999998          79999999999999

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.4e-35  Score=285.13  Aligned_cols=322  Identities=11%  Similarity=0.188  Sum_probs=243.9

Q ss_pred             ccccccccE-EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V-~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.| +|+.|  ++++|++|+.||.|++||+.+++                       ....+.+|.        
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------  162 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------  162 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS--------
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC--------
Confidence            455787774 66666  56799999999999999987655                       335677888        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          +.|.+++|+|  ++ .+++++.||+|++||+.+++....                                     
T Consensus       163 ----~~V~~l~~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~-------------------------------------  198 (464)
T 3v7d_B          163 ----GGVWALKYAH--GG-ILVSGSTDRTVRVWDIKKGCCTHV-------------------------------------  198 (464)
T ss_dssp             ----SCEEEEEECS--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----cCEEEEEEcC--CC-EEEEEeCCCCEEEEECCCCcEEEE-------------------------------------
Confidence                8899999954  54 899999999999999998764432                                     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec--cCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                             +.+|...|.+++|+  +++++++++ .|+.|++||+++...
T Consensus       199 ---------------------------------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          199 ---------------------------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             ---------------------------------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence                                                   34677889999998  477889998 799999999986653


Q ss_pred             eeeeccc------------C---ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          266 SFNIVDV------------K---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       266 ~~~~~~~------------~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .......            .   ...+.+|...+.++  ++++ .++++++.||.|++||+++++.    +..       
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~----~~~-------  305 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKC----LYI-------  305 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEE----EEE-------
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcE----EEE-------
Confidence            3211000            0   01356788888887  4566 7999999999999999988765    233       


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                           +.+|...|.+++|+|+++++++|+. +.|++||+++ ++.+..+.+|...               |.+++|+  +
T Consensus       306 -----~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~--~  362 (464)
T 3v7d_B          306 -----LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL---------------VGLLRLS--D  362 (464)
T ss_dssp             -----ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEEEC--S
T ss_pred             -----ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc---------------EEEEEEc--C
Confidence                 3445578999999999999999875 9999999996 8888888888765               4478886  5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCC-ccccccCCe
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG-NAFDFSMKL  488 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~i  488 (513)
                      ++|++++.||.|++||+.++... .. ..+...+..++++++++++++|+ |+.|++   |+....+... ....|...|
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i---wd~~~g~~~~~~~~~~~~~v  436 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSRK-FS-YHHTNLSAITTFYVSDNILVSGS-ENQFNI---YNLRSGKLVHANILKDADQI  436 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEE-EE-EECTTCCCEEEEEECSSEEEEEE-TTEEEE---EETTTCCEEESCTTTTCSEE
T ss_pred             CEEEEEeCCCcEEEEECCCCcee-ee-ecCCCCccEEEEEeCCCEEEEec-CCeEEE---EECCCCcEEehhhccCCCcE
Confidence            79999999999999999976432 22 23566777889999999999998 899999   3332222222 244578999


Q ss_pred             eEEEEeCCCCEEEEEcCCcEEEE
Q 010287          489 LHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       489 ~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      .+++|+ ...+++++++++..++
T Consensus       437 ~~v~~~-~~~l~~~~~~~g~~~i  458 (464)
T 3v7d_B          437 WSVNFK-GKTLVAAVEKDGQSFL  458 (464)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEE
T ss_pred             EEEEec-CCEEEEEEEeCCeEEE
Confidence            999998 3344555556665544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-35  Score=276.28  Aligned_cols=317  Identities=14%  Similarity=0.147  Sum_probs=227.0

Q ss_pred             ccccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecc--ccCCCCcccc
Q 010287           32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE--FQSHEPEFDY  105 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~  105 (513)
                      .+|.++|++++|+|+    ..++++++.++.|+||++.+++..                    .....  ...|.     
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~-----   69 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD-----   69 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence            479999999999984    456666666779999998765531                    00011  11244     


Q ss_pred             cccccccccceeEEEeecCC--CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287          106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (513)
                             ..|++++|+|...  +.+|++++.||.|++||+.+++....                                
T Consensus        70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--------------------------------  110 (366)
T 3k26_A           70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--------------------------------  110 (366)
T ss_dssp             -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred             -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence                   7799999988533  67999999999999999987754332                                


Q ss_pred             CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcC
Q 010287          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLE  261 (513)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~  261 (513)
                                                                  +.+|...|.+++|+| ++++|+++ .|+.|++||++
T Consensus       111 --------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A          111 --------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             --------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             --------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence                                                        346778899999999 89999998 79999999998


Q ss_pred             CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce--eecc----------ccC
Q 010287          262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEE----------QEA  329 (513)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~----------~~~  329 (513)
                      +++....+.     .+..|...|.+++|+|++ .+|++++.||.|++||+++++.......  .+..          ...
T Consensus       147 ~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          147 TDTLVAIFG-----GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             TTEEEEEEC-----STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             cCeEEEEec-----ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            765443221     236789999999999998 8999999999999999988654211000  0000          000


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                      .........|...|.+++|+  +.++++++. +.|++||+.........+..+......+..+...  -..+++++|+|+
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~  296 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMD  296 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEEC
T ss_pred             cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCC
Confidence            00111223478899999999  778888875 9999999986332222221111111111100000  011458899999


Q ss_pred             --CCEEEEEeCCCcEEEEecCCCCcc---ceeecCC--CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          409 --GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       409 --~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                        +++|++|+.||.|++||+.++...   ...+..|  ..+|..++|+|++++|++++.||.|++
T Consensus       297 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          297 FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence              999999999999999999987432   2366777  799999999999999999999999999

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=278.08  Aligned_cols=314  Identities=15%  Similarity=0.199  Sum_probs=229.2

Q ss_pred             ccccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.|++++|+| ++++||+|+.||.|+||++.+...........          ..........+|.        
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--------   99 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----------VCSIGRDHPDVHR--------   99 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------EEEECTTCTTCCS--------
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------cccccccccccCC--------
Confidence            4556999999999999 99999999999999999998766421110000          0000001123466        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          ..|.+++|+|. ++.+|++++.|+.|++||+.+++.....                                    
T Consensus       100 ----~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------  138 (408)
T 4a11_B          100 ----YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVF------------------------------------  138 (408)
T ss_dssp             ----SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEE------------------------------------
T ss_pred             ----CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceec------------------------------------
Confidence                88999999652 4568999999999999999987654432                                    


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCc
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                               .+...+.++++++.   +.+++++ .++.|++||+++++
T Consensus       139 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          139 -----------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             -----------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             -----------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence                                                     23355788888874   4588888 79999999998765


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc---cCCCCccccccccc
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPGTRSFFTEIIA  341 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  341 (513)
                      ...        .+..|...|.+++|+|++..+|++++.||.|++||++++...   ...+...   ..........+|..
T Consensus       178 ~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          178 CSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             CCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccccC
Confidence            443        456789999999999998457999999999999999886532   2222221   11122233467889


Q ss_pred             cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      .|.+++|+|++++|++++. +.|++||+.+ ++....+..+.....          ...+........+..+++++.|+.
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGST  315 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTE
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCE
Confidence            9999999999999999875 9999999986 554443332221100          000111222334556777788999


Q ss_pred             EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |++||+.++ .....+.+|..+|.+++|+|++++|++++.||.|++
T Consensus       316 i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  360 (408)
T 4a11_B          316 IAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA  360 (408)
T ss_dssp             EEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence            999999987 555788999999999999999999999999999999

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-36  Score=286.79  Aligned_cols=300  Identities=11%  Similarity=0.127  Sum_probs=215.4

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      |.++|++++|+|+|++||+|+.||.|+||++.++..                     .....+.+|.            .
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------~   56 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------K   56 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------S
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------c
Confidence            568999999999999999999999999999986521                     1335677888            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .|.+++|+|  ++.+|++++.|++|++||+.++. ....                                         
T Consensus        57 ~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----------------------------------------   93 (377)
T 3dwl_C           57 IVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGTWKQT-----------------------------------------   93 (377)
T ss_dssp             CEEEEEECT--TTCCEEEEETTSSEEEC------CCCCE-----------------------------------------
T ss_pred             eEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCceeee-----------------------------------------
Confidence            899999965  67899999999999999998765 1111                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                       ..+.+|...|.+++|+|++++|+++ .|+.|++||+++++.....  
T Consensus        94 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  138 (377)
T 3dwl_C           94 ---------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS--  138 (377)
T ss_dssp             ---------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC--
T ss_pred             ---------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee--
Confidence                                             0134678889999999999999998 7999999999876531100  


Q ss_pred             cCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC--CCCccccccccccEEEEEE
Q 010287          272 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       272 ~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~  348 (513)
                         ..+.. |...|.+++|+|++ ++|++++.|+.|++||++.............+...  ......+ +|...|.+++|
T Consensus       139 ---~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  213 (377)
T 3dwl_C          139 ---KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF  213 (377)
T ss_dssp             ---EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred             ---eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence               13455 89999999999998 89999999999999999754422111000000000  0001112 67789999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCC----eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      +|++++|++++. +.|++||+.. ++.    +..+..|...               |.+++|+|++++|++++.++.+ +
T Consensus       214 sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~~-~  276 (377)
T 3dwl_C          214 SPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSPI-L  276 (377)
T ss_dssp             CTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSEE-E
T ss_pred             CCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcEE-E
Confidence            999999999875 9999999997 555    6667777654               5599999999999998877665 6


Q ss_pred             EecCCCC-ccce--------------------------------------------------eecCCCCceeEEEEcCCC
Q 010287          424 FGCSEGS-AEST--------------------------------------------------TLEASKNPMRRQVQTPSR  452 (513)
Q Consensus       424 wd~~~~~-~~~~--------------------------------------------------~~~~~~~~v~~~~~~~~~  452 (513)
                      |+..... ....                                                  ....|...|.++.+.+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~  356 (377)
T 3dwl_C          277 LQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGT  356 (377)
T ss_dssp             ECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEE
T ss_pred             EEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCC
Confidence            7655221 0000                                                  111388999999876554


Q ss_pred             C----ceeeecCCCeEEE
Q 010287          453 P----SRPLGSLSGVVRR  466 (513)
Q Consensus       453 ~----~l~~~~~d~~i~~  466 (513)
                      .    .+++|+.||.|++
T Consensus       357 ~~~~~~~~s~g~Dg~i~i  374 (377)
T 3dwl_C          357 PGNITAFTSSGTDGRVVL  374 (377)
T ss_dssp             TTEEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCcEEE
Confidence            4    5999999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=277.70  Aligned_cols=288  Identities=12%  Similarity=0.177  Sum_probs=221.3

Q ss_pred             cccccccEEEEEEcCCCC-EEEeecC---CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           31 EVQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~-~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ..+|.+.|++++|+|++. ++++|+.   ||.|+||++.+++..                      .....+|.      
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------   65 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------   65 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES------
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc------
Confidence            346999999999999985 5567776   999999999876531                      11122455      


Q ss_pred             ccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          107 KSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                            ..|.+++|+|.. ++.+|++++.||.|++||+.+++ ...                                  
T Consensus        66 ------~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------  105 (357)
T 3i2n_A           66 ------KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY----------------------------------  105 (357)
T ss_dssp             ------SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE----------------------------------
T ss_pred             ------CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE----------------------------------
Confidence                  889999997632 16799999999999999998764 111                                  


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE------eccCCCEEEEE-cCCeEEE
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISA-DDLRINL  257 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~-~d~~i~v  257 (513)
                                                                .+.+|...|.+++      |+|++++|+++ .|+.|++
T Consensus       106 ------------------------------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A          106 ------------------------------------------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             ------------------------------------------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             ------------------------------------------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence                                                      1357778899885      57899999998 7999999


Q ss_pred             EEcCCCcceeeecccCcccccc-ccCCeEEEE----EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287          258 WNLEISNQSFNIVDVKPANMED-LTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  332 (513)
Q Consensus       258 wd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~----~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  332 (513)
                      ||++++......+.    ...+ +...+.++.    |+|++ .++++++.||.|++||+++++..    .          
T Consensus       144 wd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~----------  204 (357)
T 3i2n_A          144 WDPRQKDDPVANME----PVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W----------  204 (357)
T ss_dssp             ECTTSCSSCSEEEC----CCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E----------
T ss_pred             EeCCCCCCcceecc----ccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e----------
Confidence            99997663333211    1111 234788888    67888 89999999999999999887641    1          


Q ss_pred             ccccccccccEEEEEEee---cCCEEEEEeC-CeEEEEEccCCCCCeeeee-----cccccccccccccccCCccceeeE
Q 010287          333 RSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       333 ~~~~~~~~~~v~~i~~sp---~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                         ...|...|.+++|+|   ++.+|++++. +.|++||++. ++....+.     .|...               |+++
T Consensus       205 ---~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~~  265 (357)
T 3i2n_A          205 ---ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQV  265 (357)
T ss_dssp             ---EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEEE
T ss_pred             ---ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEEE
Confidence               133447899999999   8999999875 9999999986 55554443     45443               5699


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEecCCCCc------------------cceeecCCCCceeEEEEcCCCCcee-eecCCCe
Q 010287          404 CLSGDGG-RVATGSYSNLFRVFGCSEGSA------------------ESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGV  463 (513)
Q Consensus       404 ~~s~~~~-~l~~~~~dg~i~vwd~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~  463 (513)
                      +|+|+++ +|++++.||.|++||+..+..                  ....+..|..+|.+++|+|++++|+ +++.|+.
T Consensus       266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence            9999998 899999999999999986532                  2456778999999999999999998 8999999


Q ss_pred             EEE
Q 010287          464 VRR  466 (513)
Q Consensus       464 i~~  466 (513)
                      |++
T Consensus       346 i~i  348 (357)
T 3i2n_A          346 VRV  348 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.1e-36  Score=278.69  Aligned_cols=196  Identities=12%  Similarity=0.064  Sum_probs=152.4

Q ss_pred             cccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          230 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      .+...+.+++|+|||++++++   .|++|++||+++......        + .|...|.+++|+|++ +++++++. +.+
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~-~~~  199 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITG-SSL  199 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECS-SCE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccc-eeE
Confidence            344568899999999998754   489999999997765432        2 367789999999999 88888875 556


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC----eEEEEEccCCCCC----eee
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP----VAT  377 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~----~v~iwd~~~~~~~----~~~  377 (513)
                      ++|+..++.....  .            ...+|...|.+++|+|+++++++++ ++    .+++|++.. ...    ...
T Consensus       200 ~~~~~~~~~~~~~--~------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~  264 (365)
T 4h5i_A          200 EVISTVTGSCIAR--K------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQ  264 (365)
T ss_dssp             EEEETTTCCEEEE--E------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEE
T ss_pred             EEEEeccCcceee--e------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeee
Confidence            6677666553211  0            1234557899999999999999875 33    678888874 221    123


Q ss_pred             eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      +..|...               |++++|+|||++||+|+.|+.|+|||+.+++.+...+++|..+|++++|+|++++||+
T Consensus       265 ~~~~~~~---------------V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          265 VTNRFKG---------------ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EESSCSC---------------EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             ecCCCCC---------------eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            3344433               5699999999999999999999999999885444456899999999999999999999


Q ss_pred             ecCCCeEEE
Q 010287          458 GSLSGVVRR  466 (513)
Q Consensus       458 ~~~d~~i~~  466 (513)
                      ||.|++|+|
T Consensus       330 ~S~D~tvrv  338 (365)
T 4h5i_A          330 VSAANTIHI  338 (365)
T ss_dssp             EETTSEEEE
T ss_pred             EeCCCeEEE
Confidence            999999999

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-36  Score=281.34  Aligned_cols=300  Identities=7%  Similarity=0.035  Sum_probs=216.9

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      -..+|.+++|||||+++|+++.|++|+  |.+..+                          .+.+|.            .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------~   53 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------K   53 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------G
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------c
Confidence            358999999999999999999999999  633322                          346788            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.+++|+|  +|       .++.+.+|+.+...   ..                                         
T Consensus        54 ~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~-----------------------------------------   80 (588)
T 2j04_A           54 NLFHVKEFP--LE-------FENKLDFELAQQNG---LL-----------------------------------------   80 (588)
T ss_dssp             GTEEEEEEC--CC-------CCCTTTTSCCCSSC---SS-----------------------------------------
T ss_pred             cEEEEEECC--CC-------CcceEEEEeCCCce---Ee-----------------------------------------
Confidence            899999976  54       44444444432211   10                                         


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        ...|...|.+++|+|+|++|+++ .||.|++||.+.   ...    
T Consensus        81 ----------------------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~----  119 (588)
T 2j04_A           81 ----------------------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT----  119 (588)
T ss_dssp             ----------------------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE----
T ss_pred             ----------------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee----
Confidence                                              01335679999999999999998 799999999653   322    


Q ss_pred             CccccccccC-----CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc---cceeeccccCCCCccccccccccEE
Q 010287          273 KPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       273 ~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                         .+. |..     .+.+++|+|+| ++|++|+.||+|++||+.++.....   .+..++.+        ..+|...|.
T Consensus       120 ---~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~~V~  186 (588)
T 2j04_A          120 ---NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKDWVT  186 (588)
T ss_dssp             ---ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCCCEE
T ss_pred             ---ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccccccEE
Confidence               234 443     59999999999 9999999999999999987643111   12333222        245678999


Q ss_pred             EEEEeecCCEEEEEeCCeEEEEEccCCCCC---eeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287          345 DIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL  420 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  420 (513)
                      +++|+|+| +++++.|+.|++||+.. +..   ..++. +|...               |.+++|+  +++|++++ ++.
T Consensus       187 sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa~-~~t  246 (588)
T 2j04_A          187 HIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLTC-PGY  246 (588)
T ss_dssp             EEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEEC-SSE
T ss_pred             EEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEEe-CCe
Confidence            99999999 55555679999999985 442   23453 55443               4589999  68999887 699


Q ss_pred             EEEEecCCCCccceeecCCCCceeEEEE--cCCCCceeeecCCCeEEEec---------------------CCCCCcccc
Q 010287          421 FRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVK---------------------GADNSALDA  477 (513)
Q Consensus       421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~~---------------------~~~~~~~~~  477 (513)
                      |++||+.++... ....+|...+..+.+  +|++..|+++++||. ++..                     -|.....  
T Consensus       247 IkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~--  322 (588)
T 2j04_A          247 VHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWN--  322 (588)
T ss_dssp             EEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTT--
T ss_pred             EEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCC--
Confidence            999999976332 233389999999999  999999999999999 6511                     1111100  


Q ss_pred             CCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          478 NGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       478 ~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ....+++...|.+++|||||+.+|+++
T Consensus       323 ~l~~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          323 EFNNYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             SSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             ceeeeccceEEEEEEECCCCCEEEEEE
Confidence            011223355699999999999999886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=282.17  Aligned_cols=347  Identities=12%  Similarity=0.121  Sum_probs=235.8

Q ss_pred             ccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        32 ~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....                 .++....+ +|.          
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~----------  111 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS----------  111 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence            57899999999999 99999999999999999987622100                 00000111 355          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEcc---CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                        ..|.+++|+|  ++.+|++++.||+|++||+.   .++.......+.-.                 .+.++|      
T Consensus       112 --~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~-----------------~~~~~~------  164 (437)
T 3gre_A          112 --STVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR-----------------KINLKN------  164 (437)
T ss_dssp             --SCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE-----------------EEEGGG------
T ss_pred             --CCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeE-----------------EEEccC------
Confidence              8899999965  77799999999999999995   33332221111000                 000000      


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE--eccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS--NNSDGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                               .++...+.++.  +++++++|+++ .|+.|++||+++++
T Consensus       165 -----------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          165 -----------------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             -----------------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred             -----------------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence                                                     01445677777  66889999998 79999999999766


Q ss_pred             ceeeecccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          265 QSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      ....        +..  |...|++++|+|++ .+|++++.||.|++||++++..    +..+.           ..|...
T Consensus       204 ~~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~-----------~~~~~~  259 (437)
T 3gre_A          204 RLQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWS-----------FGDHAP  259 (437)
T ss_dssp             EEEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEB-----------CTTCEE
T ss_pred             eeEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEe-----------cCCCCc
Confidence            5433        344  88999999999998 9999999999999999998664    33322           134467


Q ss_pred             EEEEEEee----cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccccc-----------ccCCccceeeEEEe
Q 010287          343 ISDIKFAR----NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-----------ENDSIFDKFECCLS  406 (513)
Q Consensus       343 v~~i~~sp----~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s  406 (513)
                      |.+++|+|    ++.+|++++. +.|++||+++ ++.+..+..|........-..           .......|++++|+
T Consensus       260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             EEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             eEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            99996664    6779999875 9999999996 777888877654332111100           00122246799999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccceeecCCC---CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD  483 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  483 (513)
                       ++++|++|+.|+.|++||+.++ .....+.+|.   ..+....+++...+++.. .+         .... ........
T Consensus       339 -~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~-~~~~~~~~  405 (437)
T 3gre_A          339 -NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRK-MK---------RTST-HSVDDSLY  405 (437)
T ss_dssp             -TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEE-CC----------------------
T ss_pred             -CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEe-cc---------cccc-cccCcccc
Confidence             8899999999999999999987 4445666643   334455555554444433 00         0000 01112234


Q ss_pred             ccCCeeEEEEeCC--CCEEEEEc-CCcEEEEe
Q 010287          484 FSMKLLHLAWHPS--ENSIACAA-SNSLYMYY  512 (513)
Q Consensus       484 ~~~~i~~~~~sp~--~~~la~~~-~~~~~i~~  512 (513)
                      |...|++++|+++  +.+|++++ ++.+.||+
T Consensus       406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            8999999999999  77888887 67788874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-35  Score=304.37  Aligned_cols=383  Identities=14%  Similarity=0.156  Sum_probs=281.2

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      ....|++..  +. .......|...|++++|+|++++||+|+.||.|+||++.+++.                       
T Consensus        36 ~v~iwd~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------   89 (814)
T 3mkq_A           36 RVEIWNYET--QV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------   89 (814)
T ss_dssp             EEEEEETTT--TE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred             EEEEEECCC--Cc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------
Confidence            345677654  11 2224457999999999999999999999999999999876653                       


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCc-eeeeeeccccCCCcccCCCCcccCc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ...+.+|.            +.|.+++|+|  ++.+|++++.||.|++||+.++ ........+.               
T Consensus        90 ~~~~~~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------------  140 (814)
T 3mkq_A           90 VVDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE---------------  140 (814)
T ss_dssp             EEEEECCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS---------------
T ss_pred             EEEEecCC------------CCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC---------------
Confidence            24567787            8899999965  7779999999999999999876 4333332221               


Q ss_pred             ccccCceecc-CCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEE
Q 010287          172 VSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI  248 (513)
Q Consensus       172 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~  248 (513)
                      .....++|+| ++..+            ++++.++.+++|++.....      .......+...+.+++|+|  ++.+|+
T Consensus       141 ~~v~~~~~~p~~~~~l------------~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTF------------ASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             SCEEEEEEETTEEEEE------------EEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             CcEEEEEEEcCCCCEE------------EEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            1223678888 77766            7788999999999865433      2222345558899999999  999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ++ .|+.|++||+.++....        .+.+|...|.+++|+|++ .++++++.||.|++||+.++..    ...+   
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~---  266 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTL---  266 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEE---
T ss_pred             EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEe---
Confidence            99 79999999998765432        456789999999999999 8999999999999999988765    2333   


Q ss_pred             cCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCCCeeeeeccccccc------c-----------c
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLRP------K-----------L  388 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~------~-----------~  388 (513)
                               ..|...+.+++|+|++.  +++++.++.+.+|++.. ..+...+........      .           .
T Consensus       267 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  336 (814)
T 3mkq_A          267 ---------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN  336 (814)
T ss_dssp             ---------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred             ---------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence                     23346899999999987  57778888899999875 333222211100000      0           0


Q ss_pred             ccccc-----------cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287          389 CDLYE-----------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       389 ~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  457 (513)
                      .....           ...-..+.+++|+|+|++|++++ |+.+.+|++.....      .+...+..++|+|+++++++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~  409 (814)
T 3mkq_A          337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYAL  409 (814)
T ss_dssp             CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEEE
T ss_pred             cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEEE
Confidence            00000           00111356899999999999998 89999999764311      23456789999999999999


Q ss_pred             ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCC---CEEE-EEcCCcEEEEe
Q 010287          458 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIA-CAASNSLYMYY  512 (513)
Q Consensus       458 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~la-~~~~~~~~i~~  512 (513)
                      ++.++.+++   ++        ...+|...|.+++|+|++   ++|+ .+.++.+.+|.
T Consensus       410 ~~~~g~v~l---~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d  457 (814)
T 3mkq_A          410 IDETGQIKY---YK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD  457 (814)
T ss_dssp             ECTTCCEEE---EE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred             EeCCCcEEE---EE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence            999999999   21        122367789999999998   4555 45588888886

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-35  Score=295.19  Aligned_cols=346  Identities=14%  Similarity=0.148  Sum_probs=264.0

Q ss_pred             ccccccccc-EEEEEEcC--CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287           29 GEEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        29 ~~~~~h~~~-V~~v~~sp--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      ....+|.+. |++++|+|  ++++||+|+.||.|+||++.++....               .+.......+.+|.     
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------~~~~~~~~~~~~~~-----  116 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------------SVEVNVKSEFQVLA-----  116 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------------EEEEEEEEEEECCS-----
T ss_pred             eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---------------cccccccchhhccc-----
Confidence            345679999 99999999  99999999999999999986542100               00112345566777     


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecC----CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceecc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (513)
                             ..|.+++|+|  ++.+|++++.+    +.|++||.  ++.......+  .             .....+.|+|
T Consensus       117 -------~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~--~-------------~~v~~~~~~~  170 (615)
T 1pgu_A          117 -------GPISDISWDF--EGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGH--S-------------QRINACHLKQ  170 (615)
T ss_dssp             -------SCEEEEEECT--TSSEEEEEECCSSCSEEEEETTT--CCEEEECCSC--S-------------SCEEEEEECS
T ss_pred             -------ccEEEEEEeC--CCCEEEEeccCCCCccEEEEEEC--CCcceeeecC--C-------------ccEEEEEECC
Confidence                   8899999955  78899999887    68999983  3333222211  1             2233678888


Q ss_pred             CCC-ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccC---CeEEEEeccC-CCEEEEE-cCCeE
Q 010287          182 NGG-CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSD-GETFISA-DDLRI  255 (513)
Q Consensus       182 ~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~-~d~~i  255 (513)
                      ++. .+            ++++.++.+++|++...+.      .. .+.+|..   .|.+++|+|+ +++|+++ .|+.|
T Consensus       171 ~~~~~l------------~~~~~d~~v~vwd~~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (615)
T 1pgu_A          171 SRPMRS------------MTVGDDGSVVFYQGPPFKF------SA-SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI  231 (615)
T ss_dssp             SSSCEE------------EEEETTTEEEEEETTTBEE------EE-EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred             CCCcEE------------EEEeCCCcEEEEeCCCcce------ee-eecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence            887 44            7778899999999765332      22 2467888   8999999999 9999998 79999


Q ss_pred             EEEEcCCCcceeeecccCcccc-c---cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc------------
Q 010287          256 NLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------  319 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------  319 (513)
                      ++||+++++...        .+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++....            
T Consensus       232 ~vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  301 (615)
T 1pgu_A          232 SCFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ  301 (615)
T ss_dssp             EEEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             EEEECCCCCEeE--------EecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence            999998766543        23 3   789999999999 77 8999999999999999886542110            


Q ss_pred             -----------------------------cceeecccc------------------------------------------
Q 010287          320 -----------------------------HSKLFEEQE------------------------------------------  328 (513)
Q Consensus       320 -----------------------------~~~~~~~~~------------------------------------------  328 (513)
                                                   ....+..+.                                          
T Consensus       302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~  381 (615)
T 1pgu_A          302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS  381 (615)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred             eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence                                         000000000                                          


Q ss_pred             -------------------------------------------------------C------------------------
Q 010287          329 -------------------------------------------------------A------------------------  329 (513)
Q Consensus       329 -------------------------------------------------------~------------------------  329 (513)
                                                                             .                        
T Consensus       382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  461 (615)
T 1pgu_A          382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV  461 (615)
T ss_dssp             STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence                                                                   0                        


Q ss_pred             ----CCC----------c--cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccc
Q 010287          330 ----PGT----------R--SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL  391 (513)
Q Consensus       330 ----~~~----------~--~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~  391 (513)
                          ...          .  ..+.+|...|.+++|+|++++|++++. +.|++||+.+ ++.+..+.+ |...       
T Consensus       462 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~-------  533 (615)
T 1pgu_A          462 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK-------  533 (615)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC-------
T ss_pred             eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc-------
Confidence                000          0  223457889999999999999999875 9999999986 777777665 6544       


Q ss_pred             cccCCccceeeEEEeC----------CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          392 YENDSIFDKFECCLSG----------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                              |++++|+|          ++++|++++.||.|++||+.++......+.+|..+|.+++|+|+++ |++++.|
T Consensus       534 --------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d  604 (615)
T 1pgu_A          534 --------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD  604 (615)
T ss_dssp             --------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred             --------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence                    56999999          9999999999999999999987566678899999999999999999 9999999


Q ss_pred             CeEEE
Q 010287          462 GVVRR  466 (513)
Q Consensus       462 ~~i~~  466 (513)
                      +.|++
T Consensus       605 ~~v~i  609 (615)
T 1pgu_A          605 ACIKR  609 (615)
T ss_dssp             SCEEE
T ss_pred             ceEEE
Confidence            99999

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-35  Score=276.80  Aligned_cols=259  Identities=14%  Similarity=0.221  Sum_probs=204.5

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|++++||+|+.||.|+||++.....                     .....+.+|.         
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------   55 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------   55 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS---------
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC---------
Confidence            4568999999999999999999999999999999874321                     2445677888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|++++|+|..++.+|++++.||.|++||+.+++......                                    
T Consensus        56 ---~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------   96 (379)
T 3jrp_A           56 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------   96 (379)
T ss_dssp             ---SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred             ---CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee------------------------------------
Confidence               88999999765447899999999999999998875322211                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                            ...|...|.+++|+|+  +++|+++ .|+.|++||++.....
T Consensus        97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred             --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence                                                  3467788999999999  8999998 7999999999876433


Q ss_pred             eeecccCccccccccCCeEEEEEeC-------------CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      ...      .+..|...|.+++|+|             ++ .+|++++.||.|++||++++.........          
T Consensus       139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------  201 (379)
T 3jrp_A          139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST----------  201 (379)
T ss_dssp             CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE----------
T ss_pred             eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE----------
Confidence            221      4567899999999999             56 89999999999999999876542222222          


Q ss_pred             cccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCCCee-e-eec--ccccccccccccccCCccceeeEEE
Q 010287          334 SFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVA-T-FQV--HEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                        +.+|...|.+++|+|+   +.+|++++. +.|++||++....... . +..  +..               .+++++|
T Consensus       202 --~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~  264 (379)
T 3jrp_A          202 --LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASW  264 (379)
T ss_dssp             --ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEE
T ss_pred             --EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC---------------cEEEEEE
Confidence              3456688999999999   899999875 9999999986322211 1 111  221               2568999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCC
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +|++++|++++.||.|++|++...
T Consensus       265 s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          265 SLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CSSSCCEEEEESSSSEEEEEEEET
T ss_pred             cCCCCEEEEecCCCcEEEEeCCCC
Confidence            999999999999999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-34  Score=267.30  Aligned_cols=295  Identities=16%  Similarity=0.179  Sum_probs=223.1

Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .+..+|+||+            +.|++|+|+|. ++++|++|+.|++|+|||+...+....                   
T Consensus        29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~-------------------   76 (340)
T 4aow_A           29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYG-------------------   76 (340)
T ss_dssp             EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSE-------------------
T ss_pred             EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccc-------------------
Confidence            3556789999            99999999763 246999999999999999986542111                   


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                         .+. ..+.+|...|.+++|+|++++|+++
T Consensus        77 ---------------------------------------------------~~~-~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           77 ---------------------------------------------------IPQ-RALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             ---------------------------------------------------EEE-EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---------------------------------------------------eee-EEEeCCCCCEEEEEECCCCCEEEEE
Confidence                                                               011 1246899999999999999999998


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                       .|+.|++|+........        ....+...+..+.+++++ ..|++++.|+.+++||+......   ..       
T Consensus       105 ~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~---~~-------  165 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY---TV-------  165 (340)
T ss_dssp             ETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE---EE-------
T ss_pred             cccccceEEeecccceee--------eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE---EE-------
Confidence             79999999998655433        234567788899999998 89999999999999998764421   11       


Q ss_pred             CCCccccccccccEEEEEEeecC--CEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287          330 PGTRSFFTEIIASISDIKFARNG--RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                           ...+|...+..++|++++  .++++++ ++.|++||++. ++.+..+.+|...               |++++|+
T Consensus       166 -----~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~---------------v~~~~~s  224 (340)
T 4aow_A          166 -----QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGY---------------LNTVTVS  224 (340)
T ss_dssp             -----CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEEEC
T ss_pred             -----EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCc---------------EEEEEEC
Confidence                 134466789999999864  5667766 49999999996 7778888877765               5599999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC--CC----CccccCCc
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN----SALDANGN  480 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~----~~~~~~~~  480 (513)
                      |++++|++|+.||.|++||+.+.. ....+.. ...+..+.++|++.++ +++.|+.|++.+..  ..    ........
T Consensus       225 ~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  301 (340)
T 4aow_A          225 PDGSLCASGGKDGQAMLWDLNEGK-HLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTS  301 (340)
T ss_dssp             TTSSEEEEEETTCEEEEEETTTTE-EEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred             CCCCEEEEEeCCCeEEEEEeccCc-eeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeee
Confidence            999999999999999999999773 3344444 4678999999987655 55679999992111  10    00011122


Q ss_pred             cccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          481 AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       481 ~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ...|...|++++|+||+++||+++ ++.++||+
T Consensus       302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            335788999999999999999887 67799996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-35  Score=279.09  Aligned_cols=291  Identities=14%  Similarity=0.194  Sum_probs=228.0

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      |.+.|++++|+|++++||+|+.||.|++|+. +++                       ....+.+|.            .
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-----------------------~~~~~~~~~------------~  150 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-----------------------LLNVLNFHR------------A  150 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-----------------------EEEEECCCC------------S
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-----------------------eeeeccCCC------------c
Confidence            6889999999999999999999999999993 222                       234567787            8


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .|.+++|+|  ++.+|++++.|+.|++||+.+++.............                                 
T Consensus       151 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------  195 (425)
T 1r5m_A          151 PIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS---------------------------------  195 (425)
T ss_dssp             CEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred             cEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc---------------------------------
Confidence            899999955  778999999999999999998876654433211100                                 


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                  .+..                .........+.+++|++++. ++++ .++.|++||++++....     
T Consensus       196 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~-----  241 (425)
T 1r5m_A          196 ------------SINA----------------ENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG-----  241 (425)
T ss_dssp             --------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE-----
T ss_pred             ------------ceee----------------ccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee-----
Confidence                        0000                00012223478899999865 5555 89999999998765432     


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         .+..|...|.+++|+|++ .+|++++.|+.|++||+++++.    ...+            .+|...|.+++|+|++
T Consensus       242 ---~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~------------~~~~~~i~~~~~~~~~  301 (425)
T 1r5m_A          242 ---KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCF------------YGHSQSIVSASWVGDD  301 (425)
T ss_dssp             ---EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEE------------CCCSSCEEEEEEETTT
T ss_pred             ---eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEe------------cCCCccEEEEEECCCC
Confidence               346789999999999998 8999999999999999988654    2222            3455789999999999


Q ss_pred             CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 010287          353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-  430 (513)
Q Consensus       353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-  430 (513)
                       ++++++. +.|++||++. ++.+..+..|...               +.+++|+|++++|++++.||.|++||+.++. 
T Consensus       302 -~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~  364 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS  364 (425)
T ss_dssp             -EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHHHC
T ss_pred             -EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCcc
Confidence             7777765 9999999986 7777777766654               4589999999999999999999999998763 


Q ss_pred             ------------------ccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE
Q 010287          431 ------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                        .....+..|..  ++..+.|+|++++|++++.||.|++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  420 (425)
T 1r5m_A          365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV  420 (425)
T ss_dssp             --------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred             ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence                              04577888866  9999999999999999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.5e-34  Score=271.49  Aligned_cols=277  Identities=12%  Similarity=0.205  Sum_probs=223.2

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  116 (513)
                      .+++|+||++ ++||+|. |++|+|||..+++..                     ....+.+|.            ..|+
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~  151 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS  151 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence            4678999976 5888886 899999998877642                     112345666            7899


Q ss_pred             eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (513)
                      +|+|+|  ++.+|++|+.||+|++||+++++....                                             
T Consensus       152 sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~~---------------------------------------------  184 (420)
T 4gga_A          152 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRN---------------------------------------------  184 (420)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred             EEEECC--CCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence            999955  888999999999999999998865432                                             


Q ss_pred             CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287          197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                     ..+|...+.+++++  +..|++| .|+.+++||.........       
T Consensus       185 -------------------------------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~-------  224 (420)
T 4gga_A          185 -------------------------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA-------  224 (420)
T ss_dssp             -------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE-------
T ss_pred             -------------------------------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE-------
Confidence                                           34677778887765  6788888 799999999986655443       


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RH  354 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~  354 (513)
                      .+.+|...+..+.++|++ .++++++.|+.+++||..+++........            ...|...|.+++|+|++ .+
T Consensus       225 ~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~------------~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          225 TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE------------ECCCSSCEEEEEECTTCTTE
T ss_pred             EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeee------------ecccCCceeeeeeCCCcccE
Confidence            567899999999999999 99999999999999999887643322222            34455789999999965 45


Q ss_pred             EEEE--e-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEEecCCC
Q 010287          355 ILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG  429 (513)
Q Consensus       355 l~~~--~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~  429 (513)
                      ++++  + |+.|++||+.+ +.....+..+..                +.++.|+|+++.+++++  .|+.|+|||+.++
T Consensus       292 la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             EEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            5553  3 49999999996 777777665543                34889999999988765  7899999999987


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       ..+.++.+|..+|.+++|+|++++|++|+.|+.|++
T Consensus       355 -~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          355 -AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             -CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             -cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence             455889999999999999999999999999999999

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-34  Score=269.10  Aligned_cols=287  Identities=10%  Similarity=0.042  Sum_probs=226.3

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      +|.+.|++++|+|++++|++|+.||.|+||++.+....                    .....+.+|.            
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence            79999999999999999999999999999999866510                    0112334676            


Q ss_pred             ccceeEEEeecCCCc-eEEEeecCCeEEEEEc-cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      ..|.+++|+|  ++. +|++++.||.|++||+ .+++...                                        
T Consensus        57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~----------------------------------------   94 (342)
T 1yfq_A           57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA----------------------------------------   94 (342)
T ss_dssp             SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred             CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence            8899999977  688 8999999999999999 7764311                                        


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecc--ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC-----
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI-----  262 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~-----  262 (513)
                                                           +.+  |...|.+++|+| ++.|+++ .|+.|++||+++     
T Consensus        95 -------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           95 -------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             -------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             -------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence                                                 235  778899999999 9999998 799999999985     


Q ss_pred             ----CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccccccceeeccccCCCCccccc
Q 010287          263 ----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFT  337 (513)
Q Consensus       263 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~  337 (513)
                          .+...        .+. |...|.+++|+|++   +++++.|+.|++||+++ +....   ...           ..
T Consensus       137 ~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~-----------~~  190 (342)
T 1yfq_A          137 IAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIE-----------ES  190 (342)
T ss_dssp             EEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEE-----------EC
T ss_pred             ccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eee-----------ec
Confidence                33221        233 78899999999874   89999999999999987 44211   101           12


Q ss_pred             cccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          338 EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       338 ~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                      .|...+.+++|+| +++++++++. |.|++|+++..     .+....+..|......      ......|.+++|+|+++
T Consensus       191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~  264 (342)
T 1yfq_A          191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEECTTTC
T ss_pred             CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEEcCCCC
Confidence            3446899999999 9999999876 99999999873     2677777776541100      00111256999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCceeeecCCCe-EEE
Q 010287          411 RVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR  466 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~-i~~  466 (513)
                      +|++++.||.|++||+.++ .....+..| ..+|.+++  |++++|++++.||. .+.
T Consensus       265 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          265 FLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred             EEEEecCCceEEEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence            9999999999999999987 445778888 99999999  99999999999998 443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-34  Score=266.69  Aligned_cols=294  Identities=15%  Similarity=0.173  Sum_probs=230.1

Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      ..+.+|.            +.|++++|+|  ++.+|++++.||.|++||+.+++....                      
T Consensus        26 ~~l~~h~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------   69 (369)
T 3zwl_B           26 IKLTGHE------------RPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLGT----------------------   69 (369)
T ss_dssp             EEEECCS------------SCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEEE----------------------
T ss_pred             EEEEEee------------ceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhhh----------------------
Confidence            4467777            8999999965  788999999999999999988754332                      


Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  252 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d  252 (513)
                                                                            +.+|...|.+++|+|++++|+++ .|
T Consensus        70 ------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           70 ------------------------------------------------------LDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             ------------------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------------------------------------------------------hhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence                                                                  34677889999999999999998 79


Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEEcCCcccccccceeeccc
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      +.|++||+.+++....        +. +...+.+++|+|++ .++++++.+     +.|++||++.......    +...
T Consensus        96 g~i~iwd~~~~~~~~~--------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~----~~~~  161 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVAT--------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHE----LTKV  161 (369)
T ss_dssp             TEEEEEETTTCCEEEE--------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCC----EEEE
T ss_pred             CeEEEEECCCCcEEEE--------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCcccee----eccc
Confidence            9999999997665432        22 77889999999999 899999998     9999999987654221    1111


Q ss_pred             cCCCCccccccccc--cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287          328 EAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       328 ~~~~~~~~~~~~~~--~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                      . ......+..|..  .+.+++|+|++++|++++. +.|++||++.....+..+..|...               |.+++
T Consensus       162 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------v~~~~  225 (369)
T 3zwl_B          162 S-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS---------------ISDMQ  225 (369)
T ss_dssp             C-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------EEEEE
T ss_pred             c-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------eeEEE
Confidence            0 011111333444  8999999999999999875 999999998645667777776654               55899


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC--------------eEEEecCC
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVRRVKGA  470 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------~i~~~~~~  470 (513)
                      |+|++++|++++.|+.|++||+.++. ....+. +..++..+.++|+++++++++.++              .+++   +
T Consensus       226 ~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~---~  300 (369)
T 3zwl_B          226 FSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF---Y  300 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE---E
T ss_pred             ECCCCCEEEEecCCceEEEEECCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE---E
Confidence            99999999999999999999999873 334444 778899999999999999999888              5555   2


Q ss_pred             CCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +............|...|++++|+|++++|++++ ++.+++|.
T Consensus       301 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            2221122233446889999999999999999887 66788885

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.2e-35  Score=280.19  Aligned_cols=281  Identities=14%  Similarity=0.198  Sum_probs=201.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|++|+|+|.. +.+|++|+.||+|+|||+.+++......                                       
T Consensus       120 ~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~~~~~---------------------------------------  159 (435)
T 4e54_B          120 RRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKPTFIK---------------------------------------  159 (435)
T ss_dssp             SCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCCEEEC---------------------------------------
T ss_pred             CCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCceeEEE---------------------------------------
Confidence            789999998743 4689999999999999998764322211                                       


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         ..+|...|.+++|+| ++++|++| .|++|++||+++.... .+.
T Consensus       160 -----------------------------------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~  203 (435)
T 4e54_B          160 -----------------------------------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFA  203 (435)
T ss_dssp             -----------------------------------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEE
T ss_pred             -----------------------------------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEe
Confidence                                               357889999999998 68899998 7999999999854322 111


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           ....+...+.+++|+|++ .+|++|+.||.|++||++...     +..            +.+|...|.+++|+|
T Consensus       204 -----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-----~~~------------~~~h~~~v~~v~~~p  260 (435)
T 4e54_B          204 -----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-----LWN------------LRMHKKKVTHVALNP  260 (435)
T ss_dssp             -----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-----CCC------------SBCCSSCEEEEEECT
T ss_pred             -----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-----eEE------------EecccceEEeeeecC
Confidence                 223345567899999998 999999999999999986533     222            355668999999999


Q ss_pred             cCC-EEEEEe-CCeEEEEEccCCCCCeeee---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          351 NGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       351 ~~~-~l~~~~-~~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      ++. ++++++ |+.|++||++. .+....+   .+|...               |++++|+|++++|++++.||.|++||
T Consensus       261 ~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          261 CCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             TCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             CCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEEEE
Confidence            876 566776 59999999986 4333222   334433               56899999999999999999999999


Q ss_pred             cCCCCccceeecCCCC------ceeEEEEcCCCCceeeec------------CCCeEEEecCCCCCccccCCcc-ccccC
Q 010287          426 CSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGS------------LSGVVRRVKGADNSALDANGNA-FDFSM  486 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~------------~d~~i~~~~~~~~~~~~~~~~~-~~~~~  486 (513)
                      +.++... ..+..|..      ......++|++..+++++            .++.|++   |+.......... ..|..
T Consensus       325 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i---wd~~~g~~~~~l~~~~~~  400 (435)
T 4e54_B          325 ASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV---FDGNSGKMMCQLYDPESS  400 (435)
T ss_dssp             SSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE---ECSSSCCEEEEECCSSCC
T ss_pred             CCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE---EECCCCcEEEEEeCCCCC
Confidence            9987433 33333221      122345555555444432            3456777   222211111121 24677


Q ss_pred             CeeEE-EEeCCCCEEEEEcCCcEEEEe
Q 010287          487 KLLHL-AWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       487 ~i~~~-~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .|.++ +|||++++||+|+++.++||+
T Consensus       401 ~v~s~~~fspdg~~lasg~d~~i~iW~  427 (435)
T 4e54_B          401 GISSLNEFNPMGDTLASAMGYHILIWS  427 (435)
T ss_dssp             CCCCEEEECTTSSCEEEECSSEEEECC
T ss_pred             cEEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            88887 699999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.9e-34  Score=268.27  Aligned_cols=290  Identities=12%  Similarity=0.145  Sum_probs=217.4

Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCC-ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      +.....+.+|.            ..|++++|+|  ++ .+|++++.|+.|++||+.+++......               
T Consensus        63 ~~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------  113 (383)
T 3ei3_B           63 YKLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQ---------------  113 (383)
T ss_dssp             CEEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEEC---------------
T ss_pred             cceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeee---------------
Confidence            34555677787            8899999966  55 799999999999999998765433211               


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETF  247 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l  247 (513)
                                                                                 ..+|...|.+++|+| ++++|
T Consensus       114 -----------------------------------------------------------~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B          114 -----------------------------------------------------------GMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             -----------------------------------------------------------CCSTTCBEEEEEEETTEEEEE
T ss_pred             -----------------------------------------------------------cCCcCCceeEEEeCCCCCCEE
Confidence                                                                       136788899999999 67899


Q ss_pred             EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          248 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       248 ~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      +++ .|+.|++||++. .....+.     ....|...|.+++|+|++ .+|++++.|+.|++||++ +..    +..   
T Consensus       135 ~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~----~~~---  199 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHE----IFK---  199 (383)
T ss_dssp             EEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCE----EEE---
T ss_pred             EEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCE----EEE---
Confidence            988 799999999984 3222211     223456889999999999 899999999999999984 332    223   


Q ss_pred             ccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCC---CCCeeeeecccccccccccccccCCcccee
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                               +.+|...|.+++|+|+++ +|++++. +.|++||++..   ...+..+ .|...               |+
T Consensus       200 ---------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---------------v~  254 (383)
T 3ei3_B          200 ---------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---------------VN  254 (383)
T ss_dssp             ---------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------EE
T ss_pred             ---------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------eE
Confidence                     344668899999999998 8888775 99999999852   2233333 34433               56


Q ss_pred             eEEEeC-CCCEEEEEeCCCcEEEEecCCCCccceeecCCC-----------------CceeEEEEcCCCCceeeecCCCe
Q 010287          402 ECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-----------------NPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       402 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      +++|+| ++++|++++.|+.|++||+.++... ..+..|.                 ..+..+.++|++++  +++.|+.
T Consensus       255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~  331 (383)
T 3ei3_B          255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT  331 (383)
T ss_dssp             EEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC
T ss_pred             EEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe
Confidence            999999 9999999999999999999987443 3333322                 23444777888887  8889999


Q ss_pred             EEEecCCCCCccccCCcccc--ccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287          464 VRRVKGADNSALDANGNAFD--FSMKLLHLAWHPSENSIACAASNSLYMYYA  513 (513)
Q Consensus       464 i~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~~~i~~~  513 (513)
                      |++   |+....+.......  |...+..++|+|++++||+++++.+++|..
T Consensus       332 i~i---wd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          332 IDI---YDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             EEE---EETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             EEE---EecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            999   33321122222222  567788889999999999999999999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-34  Score=272.92  Aligned_cols=305  Identities=10%  Similarity=0.106  Sum_probs=227.3

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ....+.+|.            +.|++++|+|    .+|++++.||.|++|++.+++.....                   
T Consensus         8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------   52 (397)
T 1sq9_A            8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPK-------------------   52 (397)
T ss_dssp             EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGG-------------------
T ss_pred             hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCC-------------------
Confidence            445678898            8999999965    59999999999999999876411100                   


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----C---
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G---  244 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---  244 (513)
                                                                        ... ..+.+|...|.+++|+|+    +   
T Consensus        53 --------------------------------------------------~~~-~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           53 --------------------------------------------------DKS-YSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             --------------------------------------------------GGE-EEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             --------------------------------------------------Ccc-eEEecCCCcEEEEEEecccccCCccc
Confidence                                                              000 113578889999999999    9   


Q ss_pred             CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccc-----cCCeEEEEEe----CCCCeE-EEEEeCCCcEEEEEcCC
Q 010287          245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-l~~~~~dg~i~vwd~~~  313 (513)
                      ++|+++ .|+.|++||+.++.......   ...+..|     ...|.+++|+    |++ .. |++++.||.|++||+++
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             cEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence            999998 79999999998766410000   0134556     5899999999    998 78 99999999999999987


Q ss_pred             ------ccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec---c-
Q 010287          314 ------SALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV---H-  381 (513)
Q Consensus       314 ------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~---~-  381 (513)
                            +.... .....+...     ......|...|.+++|+|++ ++++++. +.|++||++. ++++..+..   | 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMI  230 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---
T ss_pred             cccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEecccccc
Confidence                  44321 000022110     00012356789999999999 8888875 9999999996 777777776   5 


Q ss_pred             --cccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecC-------------CCCce
Q 010287          382 --EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKNPM  443 (513)
Q Consensus       382 --~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------~~~~v  443 (513)
                        ...               +.+++|+|++++|++++.|   |.|++||+.++ .....+..             |..++
T Consensus       231 ~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v  294 (397)
T 1sq9_A          231 NNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWV  294 (397)
T ss_dssp             CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCE
T ss_pred             ccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcE
Confidence              433               5599999999999999999   99999999987 44567777             99999


Q ss_pred             eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccc------cc---------------cCCeeEEEEeCCC-----
Q 010287          444 RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE-----  497 (513)
Q Consensus       444 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~sp~~-----  497 (513)
                      .++.|+|++++|++++.|+.|++   |+....+......      .|               ...|++++|+|++     
T Consensus       295 ~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          295 MSLSFNDSGETLCSAGWDGKLRF---WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEE---EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             EEEEECCCCCEEEEEeCCCeEEE---EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence            99999999999999999999999   3222111212222      35               8999999999998     


Q ss_pred             -----CEEEEEc-CCcEEEEe
Q 010287          498 -----NSIACAA-SNSLYMYY  512 (513)
Q Consensus       498 -----~~la~~~-~~~~~i~~  512 (513)
                           ++|++++ ++.+.+|.
T Consensus       372 ~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          372 GADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             TCTTSCEEEEEETTTEEEEEE
T ss_pred             cccccceEEEecCCCcEEEEE
Confidence                 7888777 77888886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-34  Score=292.36  Aligned_cols=284  Identities=17%  Similarity=0.227  Sum_probs=216.2

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|. ++.+|++++.|++|++|++.......                                          
T Consensus       383 ~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------------  419 (694)
T 3dm0_A          383 DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAY------------------------------------------  419 (694)
T ss_dssp             SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCS------------------------------------------
T ss_pred             ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCccc------------------------------------------
Confidence            99999999753 34689999999999999987542110                                          


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                   ......+.+|...|.+++|+|++++|++| .|++|++||+.++....    
T Consensus       420 -----------------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~----  466 (694)
T 3dm0_A          420 -----------------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR----  466 (694)
T ss_dssp             -----------------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----
T ss_pred             -----------------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee----
Confidence                                         00011246899999999999999999998 69999999998765432    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.+++|+|++ .+|++++.|+.|++||......     ..+..        ...+|...|.+++|+|+
T Consensus       467 ----~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~-----~~~~~--------~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          467 ----RFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECK-----YTISE--------GGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             ----EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-----EEECS--------STTSCSSCEEEEEECSC
T ss_pred             ----EEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcc-----eeecc--------CCCCCCCcEEEEEEeCC
Confidence                457899999999999998 8999999999999999764321     11110        02457788999999998


Q ss_pred             C--CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          352 G--RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       352 ~--~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      +  ..+++++. +.|++||++. .+....+.+|...               |++++|+|++++|++|+.||.|++||+.+
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGY---------------VSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            6  57888775 9999999996 7788888888765               55999999999999999999999999998


Q ss_pred             CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcccc----CCc---------------cccccCCee
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA----NGN---------------AFDFSMKLL  489 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~~---------------~~~~~~~i~  489 (513)
                      +.. ...+. +...+.+++|+|++.+|++++ ++.|++   |+......    ...               ...+.-.++
T Consensus       593 ~~~-~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (694)
T 3dm0_A          593 GKK-LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKI---WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT  666 (694)
T ss_dssp             TEE-EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEE---EETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred             Cce-EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEE---EECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence            743 34444 346799999999998888775 556888   22211000    000               001112478


Q ss_pred             EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          490 HLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       490 ~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +++||||+++|++++ ++.++||.
T Consensus       667 ~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          667 SLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEcCCCCEEEEEcCCCeEEEEe
Confidence            999999999999887 66788886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-33  Score=265.61  Aligned_cols=288  Identities=10%  Similarity=0.132  Sum_probs=222.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|++++|+|  ++.+|++++.|+.|++||+.+++.....                                        
T Consensus         9 ~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~----------------------------------------   46 (372)
T 1k8k_C            9 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVH----------------------------------------   46 (372)
T ss_dssp             SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEE----------------------------------------
T ss_pred             CCeEEEEECC--CCCEEEEEeCCCEEEEEeCCCCcEEeee----------------------------------------
Confidence            8899999955  7889999999999999999887522211                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                        .+.+|...|.+++|+|++++|+++ .|+.|++||+++++.....  
T Consensus        47 ----------------------------------~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--   90 (372)
T 1k8k_C           47 ----------------------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL--   90 (372)
T ss_dssp             ----------------------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE--
T ss_pred             ----------------------------------eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE--
Confidence                                              135778889999999999999998 7999999999866532221  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+..|...|.+++|+|++ .+|++++.|+.|++||++.+..... ...           ....|...|.+++|+|+
T Consensus        91 ----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~-~~~-----------~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           91 ----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV-CKH-----------IKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             ----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE-EEE-----------ECTTCCSCEEEEEECTT
T ss_pred             ----EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee-eee-----------eecccCCCeeEEEEcCC
Confidence                346688999999999998 9999999999999999987653110 111           12345678999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccC-----------------CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE
Q 010287          352 GRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA  413 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  413 (513)
                      +++|++++. +.|++||++.                 .++.+..+..|...               +.+++|+|++++|+
T Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRVA  218 (372)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEEE
T ss_pred             CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCEEE
Confidence            999999875 9999999642                 14445555544443               56999999999999


Q ss_pred             EEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC--C-------------------
Q 010287          414 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--N-------------------  472 (513)
Q Consensus       414 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~-------------------  472 (513)
                      +++.|+.|++||+.++ .....+..|..++..++|+|+++++++| .|+.|++.+...  .                   
T Consensus       219 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (372)
T 1k8k_C          219 WVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  296 (372)
T ss_dssp             EEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             EEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence            9999999999999987 4557888999999999999999999988 899998821111  0                   


Q ss_pred             ----------CccccC------Ccc-ccccCCeeEEEEe-CCC---CEEEEEc-CCcEEEEe
Q 010287          473 ----------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAA-SNSLYMYY  512 (513)
Q Consensus       473 ----------~~~~~~------~~~-~~~~~~i~~~~~s-p~~---~~la~~~-~~~~~i~~  512 (513)
                                ......      ... ..|...|++++|+ +++   ++|++++ ++.+++|+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence                      000000      122 3799999999977 666   8999888 67788885

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=259.05  Aligned_cols=276  Identities=16%  Similarity=0.173  Sum_probs=222.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++| |++.+||+|+.||.|++||+.+...                       ...+..|.         
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~---------   59 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------------GTVVYTGQ---------   59 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------------EEEEEECS---------
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------------EEEeecCC---------
Confidence            45689999999999 9999999999999999999865542                       24456676         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.++++++.|+.|++|++........                                      
T Consensus        60 ---~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~--------------------------------------   96 (313)
T 3odt_A           60 ---GFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGEDP--------------------------------------   96 (313)
T ss_dssp             ---SCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSCC--------------------------------------
T ss_pred             ---ccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCCc--------------------------------------
Confidence               8899999966  778999999999999999876421000                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                        .. .+.+|...|.+++|  +++.++++ .|+.|++||.  ..... 
T Consensus        97 ----------------------------------~~-~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~-  136 (313)
T 3odt_A           97 ----------------------------------LY-TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY-  136 (313)
T ss_dssp             -----------------------------------C-EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE-
T ss_pred             ----------------------------------cc-chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE-
Confidence                                              00 13578888999999  56788888 7999999992  23222 


Q ss_pred             ecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                             .+..|...+.++.|.| ++ ..+++++.||.|++||....      ...+..           .|...+.+++
T Consensus       137 -------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~-----------~~~~~i~~~~  191 (313)
T 3odt_A          137 -------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSG-----------IHNDVVRHLA  191 (313)
T ss_dssp             -------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECS-----------SCSSCEEEEE
T ss_pred             -------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEec-----------cCcccEEEEE
Confidence                   4567899999999998 65 89999999999999994321      222222           1457899999


Q ss_pred             EeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |+|++. +++++ ++.|++||++. ++.+..+..|...               +++++|+|++ .|++++.||.|++||+
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred             EcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence            999999 66655 59999999996 8888888877765               5599999999 5889999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++ .....+..|..++..+.|+|+++ +++++.|+.|++
T Consensus       254 ~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          254 ENG-SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             TTC-CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred             CCC-ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence            987 45578889999999999999998 667889999999

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-34  Score=270.20  Aligned_cols=298  Identities=13%  Similarity=0.139  Sum_probs=218.2

Q ss_pred             ccceeEEEeec--CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       113 ~~i~~i~~~~~--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      ..|++++|+|.  .....+++++.++.|++||+.+++.........                                  
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~----------------------------------   64 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV----------------------------------   64 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE----------------------------------
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc----------------------------------
Confidence            89999999873  123467777778899999998765433221110                                  


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----CCEEEEE-cCCeEEEEEcCCCcc
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                           ...|...|.+++|+|+    +++|++| .||.|++||+.+++.
T Consensus        65 -------------------------------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  107 (366)
T 3k26_A           65 -------------------------------------DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC  107 (366)
T ss_dssp             -------------------------------------CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred             -------------------------------------ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence                                                 1236677999999998    6688888 799999999987654


Q ss_pred             eeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      ..        .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.    ...+..         +.+|...|.
T Consensus       108 ~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~---------~~~~~~~v~  165 (366)
T 3k26_A          108 IK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTL----VAIFGG---------VEGHRDEVL  165 (366)
T ss_dssp             EE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEE----EEEECS---------TTSCSSCEE
T ss_pred             ee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeE----EEEecc---------cccccCcee
Confidence            43        4567999999999999 66 9999999999999999988764    222211         244668899


Q ss_pred             EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc---------------cc-cccccCCccceeeEEEeC
Q 010287          345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK---------------LC-DLYENDSIFDKFECCLSG  407 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~v~~~~~s~  407 (513)
                      +++|+|++.+|++++. +.|++||++. ++....+..+......               .. ...+..   .|.+++|+ 
T Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~-  240 (366)
T 3k26_A          166 SADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN---YVDCVRWL-  240 (366)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS---CCCEEEEE-
T ss_pred             EEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcc---eEEEEEEc-
Confidence            9999999999999875 9999999985 4433333220000000               00 000111   25589998 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCc-------------cceeecCCCCceeEEEEcCC--CCceeeecCCCeEEEecCCCC
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGADN  472 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~  472 (513)
                       +++|++++.|+.|++||+.+...             ....+..|..++..++|+|+  +++|++|+.||.|++   |+.
T Consensus       241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v---wd~  316 (366)
T 3k26_A          241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV---WDL  316 (366)
T ss_dssp             -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEE---EEC
T ss_pred             -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEE---EEC
Confidence             77999999999999999987643             24566788889999999999  999999999999999   322


Q ss_pred             Cccc----cCCccccc--cCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          473 SALD----ANGNAFDF--SMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       473 ~~~~----~~~~~~~~--~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ...+    .......|  ...|++++|+|++++|++++ ++.+++|+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            2111    11122234  78999999999999999887 66788886

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-33  Score=254.95  Aligned_cols=283  Identities=15%  Similarity=0.173  Sum_probs=225.2

Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      .+.....+.+|.            +.|++++| |  ++.+|++++.||.|++||+.+++....                 
T Consensus         7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------------   54 (313)
T 3odt_A            7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV-----------------   54 (313)
T ss_dssp             CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred             cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence            445667788998            89999999 6  566999999999999999987654332                 


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                 ...|...|.+++|+|++++|+
T Consensus        55 -----------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~   75 (313)
T 3odt_A           55 -----------------------------------------------------------VYTGQGFLNSVCYDSEKELLL   75 (313)
T ss_dssp             -----------------------------------------------------------EEECSSCEEEEEEETTTTEEE
T ss_pred             -----------------------------------------------------------eecCCccEEEEEECCCCCEEE
Confidence                                                                       246678899999999999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ++ .|+.|++|++........+     ..+..|...|.++.|+  + .++++++.||.|++||  .+..    ...    
T Consensus        76 ~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~----~~~----  137 (313)
T 3odt_A           76 FGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSL----VYN----  137 (313)
T ss_dssp             EEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEE----EEE----
T ss_pred             EecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcE----EEe----
Confidence            98 7999999999865422111     2557899999999994  4 6899999999999999  2222    222    


Q ss_pred             cCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEE
Q 010287          328 EAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                              +..|...+.++.|+| ++.++++++. +.|++||.   .+....+.. +...               +.+++
T Consensus       138 --------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~~~  191 (313)
T 3odt_A          138 --------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRHLA  191 (313)
T ss_dssp             --------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEEEE
T ss_pred             --------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEEEE
Confidence                    334557899999999 8999999875 99999993   445555554 4333               45899


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF  484 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  484 (513)
                      |+|++. +++++.||.|++||+.++ .....+..|..++.+++|+|++ .+++++.|+.|++   |+....+.......|
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i---wd~~~~~~~~~~~~~  265 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI---WSKENGSLKQVITLP  265 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE---ECTTTCCEEEEEECS
T ss_pred             EcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE---EECCCCceeEEEecc
Confidence            999998 899999999999999987 4557888999999999999999 6899999999999   443322333334457


Q ss_pred             cCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          485 SMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       485 ~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      ...|.+++|+|++++++.+.++.+.+|.
T Consensus       266 ~~~i~~~~~~~~~~~~~~~~dg~i~iw~  293 (313)
T 3odt_A          266 AISIWSVDCMSNGDIIVGSSDNLVRIFS  293 (313)
T ss_dssp             SSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             CceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence            8899999999999988877899999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-33  Score=253.14  Aligned_cols=241  Identities=17%  Similarity=0.185  Sum_probs=191.0

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+  +++++|++++.|++|++||+..+.....                                         
T Consensus        10 ~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~~~~-----------------------------------------   46 (297)
T 2pm7_B           10 EMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETHKLI-----------------------------------------   46 (297)
T ss_dssp             SCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCBCCC-----------------------------------------
T ss_pred             CceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCcEEE-----------------------------------------
Confidence            889999995  4888999999999999999875321110                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                       ..+.+|...|.+++|+++  +++|++| .|++|++||++++..... 
T Consensus        47 ---------------------------------~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~-   92 (297)
T 2pm7_B           47 ---------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI-   92 (297)
T ss_dssp             ---------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC-
T ss_pred             ---------------------------------EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE-
Confidence                                             014689999999999863  8899998 799999999986542111 


Q ss_pred             cccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                           ..+..|...|.+++|+|+  + .+|++++.|+.|++||++++....  ..            .+.+|...|.+++
T Consensus        93 -----~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~------------~~~~h~~~v~~~~  152 (297)
T 2pm7_B           93 -----AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PI------------IIDAHAIGVNSAS  152 (297)
T ss_dssp             -----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CE------------EEECCSSCEEEEE
T ss_pred             -----EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--ee------------eeecccCccceEe
Confidence                 145678999999999997  6 799999999999999998753211  11            1355668899999


Q ss_pred             Eeec-------------CCEEEEEeC-CeEEEEEccCCCC----CeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          348 FARN-------------GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       348 ~sp~-------------~~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      |+|+             +++|++|+. +.|++||++. +.    ....+.+|...               |.+++|+|++
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp~~  216 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSPTV  216 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECCCC
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECCCC
Confidence            9997             568998875 9999999986 44    44566677665               5599999985


Q ss_pred             ---CEEEEEeCCCcEEEEecCCCCc--cceee--cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          410 ---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       410 ---~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                         ++|++++.|+.|++||+.+...  ....+  ..|...+.+++|+|++++||+++.|+.|++
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence               8999999999999999986421  11233  467889999999999999999999999999

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.7e-33  Score=264.63  Aligned_cols=282  Identities=14%  Similarity=0.175  Sum_probs=217.5

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..+....|+|++++||+|+.||.|+|||+.+++                       ....+.+|.            ..|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v  142 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI  142 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence            556666899999999999999999999976554                       234567888            889


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      ++++|+|  ++.+|++++.|++|++||+.+++....                                            
T Consensus       143 ~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--------------------------------------------  176 (420)
T 3vl1_A          143 TKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--------------------------------------------  176 (420)
T ss_dssp             EEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------
T ss_pred             EEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------
Confidence            9999965  777999999999999999987653221                                            


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                                      +.+|...|.+++|+|++++|+++ .|+.|++||+++++....+.    
T Consensus       177 --------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----  220 (420)
T 3vl1_A          177 --------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN----  220 (420)
T ss_dssp             --------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred             --------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee----
Confidence                                            35788889999999999999998 79999999999766443321    


Q ss_pred             ccccccc---------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          275 ANMEDLT---------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       275 ~~~~~~~---------------------~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                       ....+.                     ..+.+++|+|++ .+|++++.||.|++||++++...    ..+         
T Consensus       221 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~---------  285 (420)
T 3vl1_A          221 -RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQL---------  285 (420)
T ss_dssp             -BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEE---------
T ss_pred             -cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEc---------
Confidence             111233                     444455567888 89999999999999999887642    111         


Q ss_pred             cccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          334 SFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                        ...|...|.+++|+|+++ +|++|+. |.|++||+++...++..+..+....              +..+ +.+++++
T Consensus       286 --~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~  348 (420)
T 3vl1_A          286 --PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGAL  348 (420)
T ss_dssp             --CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEE
T ss_pred             --ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCE
Confidence              123557899999999998 8888875 9999999997445577777643221              3355 4558889


Q ss_pred             EEEEeCCCcEEEEecCCCCc--------cceeecCCCCceeEEEEcCCCC---ceeeecCCCeEEE
Q 010287          412 VATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR  466 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~  466 (513)
                      |++++.|+.|++|++.....        ....+..|...+..++|+|+++   .+++.+.+|.+.+
T Consensus       349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred             EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence            99999999999999886422        1234557888999999999999   6666667888877

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=252.12  Aligned_cols=277  Identities=12%  Similarity=0.209  Sum_probs=215.4

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  116 (513)
                      .+++|+||+++ +||+|. |++|+|||+.+++..                     ....+.+|.            ..|+
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~   71 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS   71 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEE
Confidence            35789999986 788875 899999998877642                     112345666            7899


Q ss_pred             eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (513)
                      +++|+|  ++++|++|+.||+|++|++++++....                                             
T Consensus        72 ~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~~---------------------------------------------  104 (318)
T 4ggc_A           72 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRN---------------------------------------------  104 (318)
T ss_dssp             EEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------------------
T ss_pred             EEEECC--CCCEEEEEECCCcEEEeecCCceeEEE---------------------------------------------
Confidence            999955  788999999999999999998875443                                             


Q ss_pred             CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287          197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                     ..+|...+.++.  +++..++++ .++.+++|+.........       
T Consensus       105 -------------------------------~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~-------  144 (318)
T 4ggc_A          105 -------------------------------MTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVA-------  144 (318)
T ss_dssp             -------------------------------EECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEE-------
T ss_pred             -------------------------------ecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEE-------
Confidence                                           235656565544  456788888 799999999987655443       


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      .+.+|...+..+.+++++ .++++++.|+.|++||+++++........            ...+.+.|.++.++|++..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTTSTTE
T ss_pred             EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCCCCcE
Confidence            457899999999999999 89999999999999999987653222222            23344789999999976544


Q ss_pred             E-E--EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEEecCCC
Q 010287          356 L-S--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG  429 (513)
Q Consensus       356 ~-~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~  429 (513)
                      + .  ++. +.|++||... .........+. .               +..+.|+|+++.+++++  .|+.|++||+.++
T Consensus       212 ~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~-~---------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCS-GACLSAVDAHS-Q---------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             EEEEECTTTCEEEEEETTT-CCEEEEEECSS-C---------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EEEEecCCCCEEEEEeccc-cccccccccee-e---------------eeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence            3 3  343 9999999985 44443333222 1               34889999999887654  7999999999987


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       ....++++|..+|.+++|+|++++|++|+.|+.|++
T Consensus       275 -~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i  310 (318)
T 4ggc_A          275 -AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  310 (318)
T ss_dssp             -CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             -cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence             555889999999999999999999999999999999

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=294.24  Aligned_cols=260  Identities=13%  Similarity=0.207  Sum_probs=203.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|++++|+|+|++|++|+.||.|+||++.+...                     .....+.+|.         
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------   53 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------   53 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS---------
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc---------
Confidence            3458999999999999999999999999999999874321                     2445678888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|.+++|+|..++.+|++++.||.|++||+.+++......                                    
T Consensus        54 ---~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------   94 (753)
T 3jro_A           54 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------   94 (753)
T ss_dssp             ---SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred             ---CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc------------------------------------
Confidence               88999999775448899999999999999998875322211                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS  266 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~  266 (513)
                                                            ..+|...|.+++|+|+  ++.+++| .||.|++||+++....
T Consensus        95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence                                                  3567888999999999  9999998 7999999999876433


Q ss_pred             eeecccCccccccccCCeEEEEEeCC-------------CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          267 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       267 ~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                      ..      ..+.+|...|.+++|+|.             + .++++++.||.|++||++++.........          
T Consensus       137 ~~------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----------  199 (753)
T 3jro_A          137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST----------  199 (753)
T ss_dssp             CC------EEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE----------
T ss_pred             ce------eEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee----------
Confidence            22      145678999999999994             5 89999999999999999876432221222          


Q ss_pred             cccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCC----CeeeeecccccccccccccccCCccceeeEEE
Q 010287          334 SFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                        +.+|...|.+++|+|+   +.+|++++. |.|++||+.....    .......|...               |++++|
T Consensus       200 --~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~l~~  262 (753)
T 3jro_A          200 --LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASW  262 (753)
T ss_dssp             --ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC---------------CCCEEE
T ss_pred             --ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc---------------eEEEEE
Confidence              3456689999999999   899999875 9999999986221    11111122222               458999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +|++++|++++.||.|++|++..+.
T Consensus       263 spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          263 SLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999999999999999999998653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=272.28  Aligned_cols=243  Identities=11%  Similarity=0.072  Sum_probs=184.4

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|  ++.+|++++.|+.|++||+.++......                                        
T Consensus        12 ~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~----------------------------------------   49 (377)
T 3dwl_C           12 KPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHAR----------------------------------------   49 (377)
T ss_dssp             SCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECC----------------------------------------
T ss_pred             CcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEE----------------------------------------
Confidence            7799999965  7789999999999999999876321110                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                        .+.+|...|.+++|+|++++|+++ .|+.|++||+.++......  
T Consensus        50 ----------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~--   93 (377)
T 3dwl_C           50 ----------------------------------TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT--   93 (377)
T ss_dssp             ----------------------------------CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE--
T ss_pred             ----------------------------------EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee--
Confidence                                              035788889999999999999998 6999999999876511111  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccc-ccccEEEEEEee
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFAR  350 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp  350 (513)
                         ..+..|...|.+++|+|++ ++|++++.|+.|++||++++.... ....            +.+ |...|.+++|+|
T Consensus        94 ---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~------------~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           94 ---LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW-VSKH------------LKRPLRSTILSLDWHP  156 (377)
T ss_dssp             ---EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CC-CCEE------------ECSSCCSCEEEEEECT
T ss_pred             ---eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccce-eeeE------------eecccCCCeEEEEEcC
Confidence               1456799999999999998 899999999999999998765210 0122            233 668899999999


Q ss_pred             cCCEEEEEeC-CeEEEEEccCC-----------------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287          351 NGRHILSRDY-MTLKLWDINMD-----------------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                      ++++|++++. +.|++||+...                 ++++..+ .|..               .|++++|+|++++|
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGNAL  220 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSSCE
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCCEE
Confidence            9999999875 99999999631                 1111222 2222               25699999999999


Q ss_pred             EEEeCCCcEEEEecCCCCcc---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          413 ATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++++.||.|++||+.++...   ...+..|..++.+++|+|++++|++|+.++.+.+
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  277 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL  277 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence            99999999999999988541   5778899999999999999999999998888866

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-33  Score=266.54  Aligned_cols=276  Identities=9%  Similarity=0.167  Sum_probs=217.9

Q ss_pred             ccccc--EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCcccccccc
Q 010287           33 QEVDI--ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSL  109 (513)
Q Consensus        33 ~h~~~--V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~  109 (513)
                      +|.+.  +.+++|++  ..+++++.||.|++|++.+++..                       ..+. .|.         
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~---------  134 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES---------  134 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT---------
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC---------
Confidence            45444  44455554  56888889999999998776531                       1122 255         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+|++++.||.|++||+.+++....                                      
T Consensus       135 ---~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------------  171 (401)
T 4aez_A          135 ---TYVASVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRT--------------------------------------  171 (401)
T ss_dssp             ---CCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE--------------------------------------
T ss_pred             ---CCEEEEEECC--CCCEEEEECCCCeEEEEECcCCeEEEE--------------------------------------
Confidence               7899999965  778999999999999999987754332                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            +.+|...|.+++|  +++.|+++ .|+.|++||++.......
T Consensus       172 --------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  211 (401)
T 4aez_A          172 --------------------------------------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG  211 (401)
T ss_dssp             --------------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             --------------------------------------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee
Confidence                                                  2467788999999  45788888 799999999985554433


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+.+|...|.+++|+|++ .+|++++.|+.|++||++++..    ...            +.+|...|.+++|
T Consensus       212 -------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~------------~~~~~~~v~~~~~  267 (401)
T 4aez_A          212 -------TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP----KFT------------KTNHNAAVKAVAW  267 (401)
T ss_dssp             -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE----EEE------------ECCCSSCCCEEEE
T ss_pred             -------EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc----cEE------------ecCCcceEEEEEE
Confidence                   457799999999999998 9999999999999999987654    222            2345578999999


Q ss_pred             eecCC-EEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE--EeCCCcEE
Q 010287          349 ARNGR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFR  422 (513)
Q Consensus       349 sp~~~-~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~  422 (513)
                      +|++. ++++++   ++.|++||+.+ ++.+..+..+..                +.+++|+|++++|++  |+.||.|+
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEE
Confidence            99764 555654   59999999996 777777653322                458999999999998  44899999


Q ss_pred             EEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          423 VFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       423 vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +||+.++.... ..+.+|...+..++|+|++++|++++.||.|++
T Consensus       331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i  375 (401)
T 4aez_A          331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF  375 (401)
T ss_dssp             EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred             EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            99999763332 457789999999999999999999999999999

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.4e-34  Score=260.37  Aligned_cols=243  Identities=14%  Similarity=0.160  Sum_probs=192.4

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|  ++++|++++.|++|++||+.++......                                        
T Consensus        14 ~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~----------------------------------------   51 (316)
T 3bg1_A           14 DMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIA----------------------------------------   51 (316)
T ss_dssp             CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred             CeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence            8999999965  7889999999999999999876422110                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                        .+.+|...|.+++|++  ++++|++| .|++|++||++++..... 
T Consensus        52 ----------------------------------~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~-   96 (316)
T 3bg1_A           52 ----------------------------------DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS-   96 (316)
T ss_dssp             ----------------------------------EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE-
T ss_pred             ----------------------------------EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE-
Confidence                                              1468999999999986  48899998 799999999986532111 


Q ss_pred             cccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                           ..+.+|...|.+++|+|+  + .+|++++.|+.|++||++.+.... ...            .+.+|...+.+++
T Consensus        97 -----~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~------------~~~~h~~~v~~~~  157 (316)
T 3bg1_A           97 -----HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKK------------INNAHTIGCNAVS  157 (316)
T ss_dssp             -----EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECC------------BTTSSSSCBCCCE
T ss_pred             -----EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eee------------eeccccCCcceEE
Confidence                 145789999999999998  5 799999999999999997653210 001            1345667899999


Q ss_pred             Eeec-----------------CCEEEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          348 FARN-----------------GRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       348 ~sp~-----------------~~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      |+|+                 +++|++|+. +.|++||++...  +++..+.+|...               |.+++|+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~sp  222 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAWAP  222 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEECCC
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEecC
Confidence            9997                 468888774 999999997422  245566777655               55999999


Q ss_pred             CC----CEEEEEeCCCcEEEEecCCCC---ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          408 DG----GRVATGSYSNLFRVFGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~----~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++    ++|++++.|++|++|++.+..   .....+..|..+|.+++|+|++++||+++.|+.|++
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l  288 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL  288 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred             CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            87    889999999999999998631   123456678899999999999999999999999999

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.7e-33  Score=258.83  Aligned_cols=273  Identities=13%  Similarity=0.173  Sum_probs=204.6

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|++++|+|++++||+|+.||.|+||++.+...                   .......+.+|.          
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~----------   57 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD----------   57 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence            458999999999999999999999999999999876542                   223445677888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|.+++|+|..++.+|++++.||.|++||+..++......                                     
T Consensus        58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------------------------------------   98 (351)
T 3f3f_A           58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR-------------------------------------   98 (351)
T ss_dssp             --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC-------------------------------------
T ss_pred             --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc-------------------------------------
Confidence              88999999764457899999999999999998764211000                                     


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                     .              ... ...+..|...|.+++|+|+  +++|+++ .|+.|++||+++.+...
T Consensus        99 ---------------~--------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           99 ---------------R--------------WNK-LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             ---------------S--------------EEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             ---------------C--------------cce-eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence                           0              001 1114578899999999999  9999998 79999999998765432


Q ss_pred             eec-----ccCccccccccCCeEEEEEeCC---CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287          268 NIV-----DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  339 (513)
Q Consensus       268 ~~~-----~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (513)
                      .+.     .........|...+.+++|+|+   + .++++++.++.+.+|+...+...  ....            +.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~h  213 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK------------LPGH  213 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE------------CCCC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee------------cCCC
Confidence            110     0000112367888999999997   6 89999999999988887665431  0111            3456


Q ss_pred             cccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCC------------------------------------------
Q 010287          340 IASISDIKFARNG----RHILSRDY-MTLKLWDINMDS------------------------------------------  372 (513)
Q Consensus       340 ~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~------------------------------------------  372 (513)
                      ...|.+++|+|++    .+|++++. +.|++||++...                                          
T Consensus       214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (351)
T 3f3f_A          214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN  293 (351)
T ss_dssp             CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred             CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence            6899999999998    78888875 999999998521                                          


Q ss_pred             ---CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          373 ---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       373 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                         +.+..+.+|..               .|++++|+|++++|++++.||.|++|++.+++.
T Consensus       294 ~~~~~~~~~~~h~~---------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          294 LQVELLSEHDDHNG---------------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEEEEEECTTSS---------------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ccccEEEEEecccc---------------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence               12222222322               266999999999999999999999999997743

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=259.92  Aligned_cols=246  Identities=13%  Similarity=0.131  Sum_probs=186.1

Q ss_pred             cccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE------eCCCCeEEEE
Q 010287          230 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY  299 (513)
Q Consensus       230 ~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~  299 (513)
                      +|...|.+++|+|+   +++|+++ .|+.|++||+.+++....       .+.+|...|.++.|      +|++ .+|++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~  134 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT  134 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence            67788999999998   6899998 799999999997662322       45789999999965      5777 89999


Q ss_pred             EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE----EeecCCEEEEEeC-CeEEEEEccCCCCC
Q 010287          300 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP  374 (513)
Q Consensus       300 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~sp~~~~l~~~~~-~~v~iwd~~~~~~~  374 (513)
                      ++.||.|++||++++...   ...+..+..        .+...+.+++    |+|+++++++++. +.|++||++. ++.
T Consensus       135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~  202 (357)
T 3i2n_A          135 GSRDGTVKVWDPRQKDDP---VANMEPVQG--------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL  202 (357)
T ss_dssp             EETTSCEEEECTTSCSSC---SEEECCCTT--------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred             EeCCCeEEEEeCCCCCCc---ceeccccCC--------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence            999999999999887522   333332221        1124788888    6789999999886 9999999986 444


Q ss_pred             eeeeecccccccccccccccCCccceeeEEEeC---CCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEE
Q 010287          375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQ  446 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~  446 (513)
                      .. ...+...               +.+++|+|   ++++|++++.||.|++||+.++... ..+     .+|..++.++
T Consensus       203 ~~-~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~  265 (357)
T 3i2n_A          203 RW-ETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQV  265 (357)
T ss_dssp             EE-EEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEE
T ss_pred             ee-ecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEE
Confidence            32 2333332               55899999   9999999999999999999876333 333     3899999999


Q ss_pred             EEcCCCC-ceeeecCCCeEEEecCCCCCc----------------cccCCccccccCCeeEEEEeCCCCEEE-EEc-CCc
Q 010287          447 VQTPSRP-SRPLGSLSGVVRRVKGADNSA----------------LDANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNS  507 (513)
Q Consensus       447 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~sp~~~~la-~~~-~~~  507 (513)
                      .|+|+++ ++++++.||.|++.+......                .........|...|++++|+|++++|+ +++ ++.
T Consensus       266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence            9999999 899999999999911111000                011222345889999999999999998 566 778


Q ss_pred             EEEEe
Q 010287          508 LYMYY  512 (513)
Q Consensus       508 ~~i~~  512 (513)
                      +++|+
T Consensus       346 i~iw~  350 (357)
T 3i2n_A          346 VRVLI  350 (357)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88886

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=257.65  Aligned_cols=295  Identities=14%  Similarity=0.178  Sum_probs=221.9

Q ss_pred             ccccccccEEEEEEcCC---CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           30 EEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ...+|.+.|++++|+|+   |++||+|+.||.|+||++.+...                     .....+.+|.      
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~------   86 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT------   86 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS------
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc------
Confidence            35579999999999999   69999999999999999976332                     1334567788      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            ..|.+++|+|  ++.+|++++.||.|++||+.+++...                                    
T Consensus        87 ------~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------  122 (368)
T 3mmy_A           87 ------GPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------  122 (368)
T ss_dssp             ------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEE------------------------------------
T ss_pred             ------CCEEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCcee------------------------------------
Confidence                  8899999965  77899999999999999998876432                                    


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe--ccCCCEEEEE-cCCeEEEEEcCCC
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEIS  263 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~-~d~~i~vwd~~~~  263 (513)
                                                               ...|...|.+++|  ++++++|+++ .|+.|++||++++
T Consensus       123 -----------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          123 -----------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             -----------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             -----------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence                                                     2357788999999  8899999998 7999999999876


Q ss_pred             cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      +....        +.. ...+.++.+.+   ..+++++.++.+++||++......   ....           ..+...+
T Consensus       162 ~~~~~--------~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~-----------~~~~~~~  215 (368)
T 3mmy_A          162 NPMMV--------LQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF---RRIE-----------SPLKHQH  215 (368)
T ss_dssp             SCSEE--------EEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE---EECC-----------CSCSSCE
T ss_pred             cEEEE--------Eec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchh---hhcc-----------ccccCCC
Confidence            64432        233 34577777765   467888999999999998754321   1111           1122456


Q ss_pred             EEEEEeecCCE----EEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          344 SDIKFARNGRH----ILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       344 ~~i~~sp~~~~----l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      .++.+.++...    +++++. +.|++||++...  ..+..+..|..........   .....|++++|+|++++|++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~  292 (368)
T 3mmy_A          216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP---QDIYAVNGIAFHPVHGTLATVG  292 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC---EEECCEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc---ccccceEEEEEecCCCEEEEEc
Confidence            77777766554    777765 999999998621  3455666655321100000   0011256999999999999999


Q ss_pred             CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .||.|++||+.++ .....+..|..++.+++|+|++++|++++.|+..+.
T Consensus       293 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          293 SDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             TTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             cCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence            9999999999987 455788899999999999999999999998876555

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-33  Score=263.10  Aligned_cols=245  Identities=10%  Similarity=0.091  Sum_probs=178.3

Q ss_pred             ccccCCeEEEEeccCCCEEEE-----------E-cCCeEEEEEcCCCcceeeeccc-CccccccccCCeEEEEEeCCCCe
Q 010287          229 HAHDYHINSISNNSDGETFIS-----------A-DDLRINLWNLEISNQSFNIVDV-KPANMEDLTEVITSAEFHPTHCN  295 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s-----------~-~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  295 (513)
                      .+|...|.+++++  ++.+++           + .|+.+++|++............ .......+...+.+++|+||| +
T Consensus        70 ~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~  146 (365)
T 4h5i_A           70 EDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-T  146 (365)
T ss_dssp             CTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-S
T ss_pred             cCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-C
Confidence            4566667776654  344444           3 3788999998765543332211 001223455678999999999 7


Q ss_pred             EEEE--EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCC
Q 010287          296 MLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG  373 (513)
Q Consensus       296 ~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~  373 (513)
                      ++++  ++.|+.|++||+++++.    ...++             |...|.+++|+|||+++++++++.+.+|+... +.
T Consensus       147 ~la~as~~~d~~i~iwd~~~~~~----~~~~~-------------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~-~~  208 (365)
T 4h5i_A          147 VAAIASSKVPAIMRIIDPSDLTE----KFEIE-------------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVT-GS  208 (365)
T ss_dssp             CEEEEESCSSCEEEEEETTTTEE----EEEEE-------------CSSCCCEEEECTTSSEEEEECSSCEEEEETTT-CC
T ss_pred             EEEEEECCCCCEEEEeECCCCcE----EEEeC-------------CCCceEEEEEccCCceEEeccceeEEEEEecc-Cc
Confidence            6654  44789999999998765    22222             33679999999999999999987788888775 44


Q ss_pred             Ceee--eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC----cEEEEecCCCCcc---ceeecCCCCcee
Q 010287          374 PVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAE---STTLEASKNPMR  444 (513)
Q Consensus       374 ~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~---~~~~~~~~~~v~  444 (513)
                      .+..  ...|...               +.+++|+|+++++++++.|+    .+++|++......   ...+.+|..+|.
T Consensus       209 ~~~~~~~~~~~~~---------------v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          209 CIARKTDFDKNWS---------------LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             EEEEECCCCTTEE---------------EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             ceeeeecCCCCCC---------------EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            4332  2233332               45899999999999999887    6888998765332   245678999999


Q ss_pred             EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          445 RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       445 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +++|+|++++||+|+.|+.|+|   |+......... ...|...|++++||||+++||+++ |+.++||.
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~i---wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIAL---VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEE---EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             eEEECCCCCceEEEcCCCEEEE---EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999   44332222222 246999999999999999999888 78899986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-32  Score=263.88  Aligned_cols=269  Identities=13%  Similarity=0.261  Sum_probs=219.8

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      +|...|+|++|  ++++|++|+.||.|++||+.+++.                       ...+.+|.            
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-----------------------KRILTGHT------------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-----------------------EEEECCCS------------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-----------------------EEEEcCCC------------
Confidence            56778999887  789999999999999999876553                       35577888            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|    ++.++++++.||+|++||+.+++....                                         
T Consensus       174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~-----------------------------------------  208 (435)
T 1p22_A          174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT-----------------------------------------  208 (435)
T ss_dssp             SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred             CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence            88999999    567999999999999999988764332                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|...|.+++|++  ..+++| .|+.|++||++++......  
T Consensus       209 -----------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~--  249 (435)
T 1p22_A          209 -----------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR--  249 (435)
T ss_dssp             -----------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE--
T ss_pred             -----------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee--
Confidence                                               246778899999974  488887 7999999999876543211  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                         ..+.+|...|.+++|  ++ .++++++.||.|++||+++++.    +..+            .+|...|.++.+  +
T Consensus       250 ---~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~----~~~~------------~~~~~~v~~~~~--~  305 (435)
T 1p22_A          250 ---RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEF----VRTL------------NGHKRGIACLQY--R  305 (435)
T ss_dssp             ---EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCE----EEEE------------ECCSSCEEEEEE--E
T ss_pred             ---eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcE----EEEE------------cCCCCcEEEEEe--C
Confidence               145789999999999  44 7899999999999999988765    3333            345578999988  4


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.++++|+. +.|++||+++ ++.+..+.+|...               |.+++|  ++++|++|+.||.|++||+.++.
T Consensus       306 ~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          306 DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            678888775 9999999997 8888888888765               346777  78899999999999999997653


Q ss_pred             c--------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          431 A--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .        ....+.+|..+|.++.+  ++.+|++++.||.|++
T Consensus       368 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          368 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             STTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             CccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            1        44678899999999999  7889999999999999

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.6e-33  Score=262.21  Aligned_cols=263  Identities=16%  Similarity=0.300  Sum_probs=203.2

Q ss_pred             cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (513)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (513)
                      ...|+...  ++........|...|++++|+|++++||+|+.||.|+|||+.+++.                       .
T Consensus       115 v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~  169 (401)
T 4aez_A          115 VYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------------------L  169 (401)
T ss_dssp             EEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------E
T ss_pred             EEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------------------E
Confidence            44465543  2222223344889999999999999999999999999999876553                       3


Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      ..+.+|.            ..|.+++|.    +..+++++.||.|++||++......                       
T Consensus       170 ~~~~~~~------------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------  210 (401)
T 4aez_A          170 RTMAGHQ------------ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI-----------------------  210 (401)
T ss_dssp             EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------
T ss_pred             EEecCCC------------CceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-----------------------
Confidence            4566888            889999993    3599999999999999998432110                       


Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  252 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d  252 (513)
                                                                          ..+.+|...|.+++|+|++++|+++ .|
T Consensus       211 ----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          211 ----------------------------------------------------GTLQGHSSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             ----------------------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ----------------------------------------------------eEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence                                                                0135788889999999999999998 79


Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEEcCCcccccccceeeccccCC
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      +.|++||++++....        .+..|...|.+++|+|++..++++++  .|+.|++||++++..    ...+.     
T Consensus       239 ~~v~iwd~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~-----  301 (401)
T 4aez_A          239 NVVQIWDARSSIPKF--------TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVD-----  301 (401)
T ss_dssp             SCEEEEETTCSSEEE--------EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEE-----
T ss_pred             CeEEEccCCCCCccE--------EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEe-----
Confidence            999999999765443        34678999999999998867888876  799999999998765    33332     


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEE--e-CCeEEEEEccCCCCCeee--eecccccccccccccccCCccceeeEEE
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~-~~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                              +...+.+++|+|++++++++  . ++.|++||+.. +.....  +.+|...               |++++|
T Consensus       302 --------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~  357 (401)
T 4aez_A          302 --------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSAL  357 (401)
T ss_dssp             --------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEE
T ss_pred             --------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEE
Confidence                    22579999999999999984  3 49999999985 444333  4455543               458999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGSAES  433 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~~~~  433 (513)
                      +|++++|++++.||.|++|++.++....
T Consensus       358 s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          358 SPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             CTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            9999999999999999999999875443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=276.18  Aligned_cols=293  Identities=10%  Similarity=0.083  Sum_probs=203.6

Q ss_pred             ccccccEEEEEEcCC------CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287           32 VQEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      ..|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++......  .+         . .......+.+|.     
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--~~---------~-~~~p~~~l~~h~-----  266 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--FK---------M-CEKPSLTLSLAD-----  266 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--EE---------C-CCSCSEEECCTT-----
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--ce---------e-ecCceEEEEcCC-----
Confidence            456889999999997      579999999999999998765421000  00         0 000112456777     


Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                             ..|++++|+|  + ..|++|+.||+|++||++++....                                   
T Consensus       267 -------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~-----------------------------------  301 (524)
T 2j04_B          267 -------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPS-----------------------------------  301 (524)
T ss_dssp             -------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCS-----------------------------------
T ss_pred             -------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCce-----------------------------------
Confidence                   8899999964  3 489999999999999998652110                                   


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEE--EeccCC-CEEEEE-cCCeEEEEEcC
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWNLE  261 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~-~d~~i~vwd~~  261 (513)
                                                              ..+.+|...|.++  +|++++ ++|++| .|++|++||++
T Consensus       302 ----------------------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          302 ----------------------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             ----------------------------------------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             ----------------------------------------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence                                                    0135788999999  578887 889998 79999999998


Q ss_pred             CCcceeeecccCcccccccc--CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287          262 ISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  339 (513)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (513)
                      +++...        .+.+|.  ..|.+++|+|++ ..+++++.|+.|++||++++..    ...            +.+|
T Consensus       342 ~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~----~~~------------l~gH  396 (524)
T 2j04_B          342 DIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA----VHP------------LVSR  396 (524)
T ss_dssp             GHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC----CEE------------EEEC
T ss_pred             CCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc----cee------------eecC
Confidence            655332        233444  247899999998 7899999999999999988654    222            3456


Q ss_pred             cccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC
Q 010287          340 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS  418 (513)
Q Consensus       340 ~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  418 (513)
                      .+.|++++|+|++++|++|+. ++|++||+..  ..+..........          ....++.++|+|+++.+. ... 
T Consensus       397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~-  462 (524)
T 2j04_B          397 ETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS-  462 (524)
T ss_dssp             SSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC-
T ss_pred             CCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC-
Confidence            689999999999999999875 9999999863  3332221111000          000145789999998553 222 


Q ss_pred             CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC---ceeeecCCCeEEE
Q 010287          419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR  466 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~  466 (513)
                       .+.+|+..........+.+|..+|.+++|+|++.   ++|+|+.||.|+|
T Consensus       463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence             2334443322245578889999999999999965   8999999999999

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.8e-32  Score=263.65  Aligned_cols=314  Identities=12%  Similarity=0.152  Sum_probs=230.1

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      ....|++..  + +......+|.+.|++++|+|++ +|++|+.||+|++||+.+++.                       
T Consensus       143 ~i~vwd~~~--~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~-----------------------  195 (464)
T 3v7d_B          143 MIRVYDSIN--K-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC-----------------------  195 (464)
T ss_dssp             CEEEEETTT--T-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE-----------------------
T ss_pred             cEEEEECCC--C-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE-----------------------
Confidence            455576654  1 1222455799999999999988 999999999999999876553                       


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ...+.+|.            ..|.+++|++.+++.++++++.|++|++||+.++.............             
T Consensus       196 ~~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-------------  250 (464)
T 3v7d_B          196 THVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-------------  250 (464)
T ss_dssp             EEEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS-------------
T ss_pred             EEEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc-------------
Confidence            35577888            88999999987788899999999999999998765332211110000             


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  251 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  251 (513)
                         .....+.+.                                     ........+|...+.++  ++++++++++ .
T Consensus       251 ---~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~  288 (464)
T 3v7d_B          251 ---LVFHTPEEN-------------------------------------PYFVGVLRGHMASVRTV--SGHGNIVVSGSY  288 (464)
T ss_dssp             ---EEESCGGGC-------------------------------------TTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred             ---eEeeccCCC-------------------------------------eEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence               000001000                                     00111246788888776  5778899998 7


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      |+.|++||+++++...        .+.+|...|.+++|+|++ ..+++++.||.|++||+++++.    +..+       
T Consensus       289 d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~-------  348 (464)
T 3v7d_B          289 DNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTL-------  348 (464)
T ss_dssp             TSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEE-------
T ss_pred             CCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEE-------
Confidence            9999999998765443        457799999999999998 8999999999999999988765    3333       


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                           .+|...|.+++|+  +.+|++++. +.|++||+.. ........ +...               +..++|+|+++
T Consensus       349 -----~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~~~~  404 (464)
T 3v7d_B          349 -----QGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYVSDN  404 (464)
T ss_dssp             -----CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEECSS
T ss_pred             -----eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEeCCC
Confidence                 4455789999997  578888775 9999999986 44333332 2211               23689999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +|++|+ ||.|++||+.+++.....+..|..+|.+++|+ ...++++++.|+.+.+
T Consensus       405 ~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i  458 (464)
T 3v7d_B          405 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL  458 (464)
T ss_dssp             EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence            999998 89999999998855544567889999999997 4455566667776665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.6e-32  Score=251.51  Aligned_cols=271  Identities=12%  Similarity=0.064  Sum_probs=210.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|  ++.+|++++.|+.|++|++.++.....                                         
T Consensus        12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------------------------------   48 (342)
T 1yfq_A           12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVD-----------------------------------------   48 (342)
T ss_dssp             SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred             CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence            8899999976  677999999999999999987541100                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEc-CCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~-~~~~~~~~~  269 (513)
                                                    .  ....+|...|.+++|+|+++ +|+++ .||.|++||+ .++.. .  
T Consensus        49 ------------------------------~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~--   93 (342)
T 1yfq_A           49 ------------------------------L--LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q--   93 (342)
T ss_dssp             ------------------------------E--EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E--
T ss_pred             ------------------------------c--eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E--
Confidence                                          0  01247788899999999999 89988 7999999999 75543 1  


Q ss_pred             cccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC---------cccccccceeeccccCCCCcccccc
Q 010287          270 VDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFFTE  338 (513)
Q Consensus       270 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  338 (513)
                            .+.+  |...|.+++|+| + .+|++++.|+.|++||+++         ++.    +..+            . 
T Consensus        94 ------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~------------~-  148 (342)
T 1yfq_A           94 ------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNNT------------K-  148 (342)
T ss_dssp             ------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESC----SSSS------------S-
T ss_pred             ------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCe----eeEE------------e-
Confidence                  4566  999999999999 6 8999999999999999986         332    1111            1 


Q ss_pred             ccccEEEEEEeecCCEEEEEe-CCeEEEEEccC-CCCCeeee-ecccccccccccccccCCccceeeEEEeC-CCCEEEE
Q 010287          339 IIASISDIKFARNGRHILSRD-YMTLKLWDINM-DSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVAT  414 (513)
Q Consensus       339 ~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  414 (513)
                      |...+.+++|+|++  +++++ ++.|++||++. ........ ..+...               +.+++|+| +++++++
T Consensus       149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~  211 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYAC  211 (342)
T ss_dssp             SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEE
T ss_pred             eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEE
Confidence            44789999999987  66655 59999999985 22322222 222222               45899999 9999999


Q ss_pred             EeCCCcEEEEecCCC-----CccceeecCCCC---------ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc
Q 010287          415 GSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN  480 (513)
Q Consensus       415 ~~~dg~i~vwd~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  480 (513)
                      ++.||.|++|++...     ......+..|..         ++.+++|+|++++|++++.||.|++   |+.........
T Consensus       212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v---wd~~~~~~~~~  288 (342)
T 1yfq_A          212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC---WNLQTRKKIKN  288 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE---EETTTTEEEEE
T ss_pred             EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE---EcCccHhHhhh
Confidence            999999999999876     355577777755         9999999999999999999999999   43332223333


Q ss_pred             cccc-cCCeeEEEEeCCCCEEEEEcCCcE
Q 010287          481 AFDF-SMKLLHLAWHPSENSIACAASNSL  508 (513)
Q Consensus       481 ~~~~-~~~i~~~~~sp~~~~la~~~~~~~  508 (513)
                      ...| ...|.+++  |++++|++++.|+.
T Consensus       289 ~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          289 FAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             hhcccCCCceEec--CCCCeEEEEecCCc
Confidence            4456 89999999  99999999886653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.5e-32  Score=257.25  Aligned_cols=248  Identities=19%  Similarity=0.323  Sum_probs=202.9

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++.                       ...+.+|.          
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------------------~~~~~~h~----------  189 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------------------LRNMTSHS----------  189 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS----------
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------------------EEEEeCCC----------
Confidence            346888999999999999999999999999999876653                       35677888          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        ..|.++.|    ++..+++++.|+.+++||........                                        
T Consensus       190 --~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~----------------------------------------  223 (420)
T 4gga_A          190 --ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV----------------------------------------  223 (420)
T ss_dssp             --SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE----------------------------------------
T ss_pred             --CceEEEee----CCCEEEEEeCCCceeEeeecccceee----------------------------------------
Confidence              78999888    34689999999999999987643111                                        


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                         ..+.+|...+..+.|+|++++++++ .|+.+++|+..+++.....
T Consensus       224 -----------------------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~  268 (420)
T 4gga_A          224 -----------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP  268 (420)
T ss_dssp             -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred             -----------------------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence                                               0135788889999999999999998 7999999999876543221


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEE--eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      .    .....|...|.+++|+|.+..+++++  +.|+.|++||++++..    ...+..+             ..+.++.
T Consensus       269 ~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~-------------~~v~~~~  327 (420)
T 4gga_A          269 L----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH-------------SQVCSIL  327 (420)
T ss_dssp             S----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS-------------SCEEEEE
T ss_pred             e----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc-------------cceeeee
Confidence            1    24467889999999999887777764  4799999999998875    2233222             4689999


Q ss_pred             EeecCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          348 FARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       348 ~sp~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      |+|++..+++++   ++.|+|||+.+ ++++..+.+|...               |++++|+|||++|++|+.|++|+||
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEE
Confidence            999999888753   49999999997 8999999999876               5699999999999999999999999


Q ss_pred             ecCCC
Q 010287          425 GCSEG  429 (513)
Q Consensus       425 d~~~~  429 (513)
                      |+...
T Consensus       392 dv~~~  396 (420)
T 4gga_A          392 RCFEL  396 (420)
T ss_dssp             CCSCS
T ss_pred             ECCCC
Confidence            99765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-32  Score=251.59  Aligned_cols=280  Identities=13%  Similarity=0.064  Sum_probs=203.3

Q ss_pred             EEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEE
Q 010287           41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (513)
Q Consensus        41 v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~  120 (513)
                      ..+.+++.+|++|+.||.|++||+.+++..                       ..+.  .            ..|.++.|
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~   84 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGE   84 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCC
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeee
Confidence            345567899999999999999999876642                       1111  1            56888888


Q ss_pred             eecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcC
Q 010287          121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP  200 (513)
Q Consensus       121 ~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  200 (513)
                      +|  +   +++++.|++|++|+......                                                    
T Consensus        85 ~~--~---~~s~s~D~~i~~w~~~~~~~----------------------------------------------------  107 (343)
T 3lrv_A           85 HP--A---IISRGPCNRLLLLYPGNQIT----------------------------------------------------  107 (343)
T ss_dssp             CC--S---EEEECSTTEEEEEETTTEEE----------------------------------------------------
T ss_pred             CC--c---eEEecCCCeEEEEEccCceE----------------------------------------------------
Confidence            66  3   99999999999999876321                                                    


Q ss_pred             CCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccc
Q 010287          201 PGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM  277 (513)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~  277 (513)
                              +|++...      ...+....+|...|.+++|+|  ++++|+++ .|++|++||+++++.. ..      ..
T Consensus       108 --------~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~------~~  166 (343)
T 3lrv_A          108 --------ILDSKTN------KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-IV------HS  166 (343)
T ss_dssp             --------EEETTTC------CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-EE------EC
T ss_pred             --------EeecCCc------ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EE------Ee
Confidence                    1111111      111222346778899999999  99999998 7999999999976653 21      11


Q ss_pred             ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          278 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      ..+...+.+++|+|++ .+|++|+.||.|++||++++....   ..+..           +|.+.|.+++|+|++.+|++
T Consensus       167 ~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~-----------~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV-----------DEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             CCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC-----------CTTSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec-----------cCCCCEEEEEEeCCCCEEEE
Confidence            3355679999999998 999999999999999999876520   22222           26689999999999999999


Q ss_pred             EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCCccceee
Q 010287          358 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTL  436 (513)
Q Consensus       358 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~  436 (513)
                      ++++.|++||++. .+.+..+.........+.          -.+++|+|++++|++++. |+.|++|++....+.... 
T Consensus       232 ~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-  299 (343)
T 3lrv_A          232 ECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTG----------TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-  299 (343)
T ss_dssp             EESSBEEEEETTS-STTCBSSCCCBC-----C----------CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred             EeCCeEEEEEcCC-CCcceeeccccccccccc----------ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence            8888999999996 555544443211100000          025999999999999998 999999999765333221 


Q ss_pred             cCCCCceeEEEEcC---CCCceeeecCCCeEEE
Q 010287          437 EASKNPMRRQVQTP---SRPSRPLGSLSGVVRR  466 (513)
Q Consensus       437 ~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~  466 (513)
                          .++..+.|.+   +.+.+++++.|+.+.+
T Consensus       300 ----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          300 ----DEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             ----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             ----cCceeEecCccccccceeEEEecCCceEE
Confidence                5677788888   8889999999999888

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.4e-32  Score=255.97  Aligned_cols=288  Identities=15%  Similarity=0.188  Sum_probs=213.5

Q ss_pred             cEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           37 IISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        37 ~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ....++++|+.. ++++|+.||.|+||++......                   ......+.+|.            +.|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V   84 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV   84 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence            345688888864 4456889999999997543221                   00113467888            889


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      ++++|+|. ++.+|++++.||+|++||+.++.......                                          
T Consensus        85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~------------------------------------------  121 (402)
T 2aq5_A           85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLR------------------------------------------  121 (402)
T ss_dssp             EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBC------------------------------------------
T ss_pred             EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccC------------------------------------------
Confidence            99999652 56799999999999999998764221000                                          


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                .+. ..+.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...      
T Consensus       122 --------------------------~~~-~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~------  168 (402)
T 2aq5_A          122 --------------------------EPV-ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL------  168 (402)
T ss_dssp             --------------------------SCS-EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE------
T ss_pred             --------------------------Cce-EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE------
Confidence                                      000 1146889999999999998 688888 79999999999765443      


Q ss_pred             cccc--ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc-cEEEEEEee
Q 010287          274 PANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFAR  350 (513)
Q Consensus       274 ~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp  350 (513)
                        .+  ..|...|.+++|+|++ .+|++++.||.|++||+++++.    +..+.           ..|.+ .+.++.|+|
T Consensus       169 --~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          169 --TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTV----VAEKD-----------RPHEGTRPVHAVFVS  230 (402)
T ss_dssp             --EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE----EEEEE-----------CSSCSSSCCEEEECS
T ss_pred             --EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCce----eeeec-----------cCCCCCcceEEEEcC
Confidence              33  6789999999999998 8999999999999999998765    33331           12223 388999999


Q ss_pred             cCCEEEEE---e-CCeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEE
Q 010287          351 NGRHILSR---D-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVF  424 (513)
Q Consensus       351 ~~~~l~~~---~-~~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw  424 (513)
                      ++++|++|   + ++.|++||++....++..... +...               +..++|+|++++|+ +|+.||.|++|
T Consensus       231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence            99999998   4 599999999863333433331 2221               45899999999997 45579999999


Q ss_pred             ecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          425 GCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       425 d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |+.++......+..  |..++..++|+|++.+++++  ++.+++
T Consensus       296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~  337 (402)
T 2aq5_A          296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF  337 (402)
T ss_dssp             EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred             EecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence            99987542344443  55899999999999998875  557776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=255.20  Aligned_cols=308  Identities=13%  Similarity=0.182  Sum_probs=214.1

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|. ++.+|++++.||.|++||+.++............                      .           
T Consensus        44 ~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------------~-----------   89 (408)
T 4a11_B           44 GGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC----------------------S-----------   89 (408)
T ss_dssp             SCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE----------------------E-----------
T ss_pred             CcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccc----------------------c-----------
Confidence            89999999541 6679999999999999999886543321110000                      0           


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                    .......+|...|.+++|+| ++++|+++ .|+.|++||+.+++....  
T Consensus        90 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--  137 (408)
T 4a11_B           90 ------------------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV--  137 (408)
T ss_dssp             ------------------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE--
T ss_pred             ------------------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee--
Confidence                                          00000246888999999999 77788888 699999999997654422  


Q ss_pred             ccCccccccccCCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             ..+...+.++.++|.+.  .++++++.|+.|++||++++..    ...            +.+|...|.+++|
T Consensus       138 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~------------~~~~~~~v~~~~~  194 (408)
T 4a11_B          138 -------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----SHI------------LQGHRQEILAVSW  194 (408)
T ss_dssp             -------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----CEE------------ECCCCSCEEEEEE
T ss_pred             -------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----eee------------ecCCCCcEEEEEE
Confidence                   23677899999998542  4999999999999999988764    222            3445678999999


Q ss_pred             eecCCE-EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          349 ARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       349 sp~~~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      +|++.+ +++++. +.|++||++.....+..+..+...............-..|.+++|+|++++|++++.||.|++||+
T Consensus       195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            999984 777765 999999998744455555433321111100000111123669999999999999999999999999


Q ss_pred             CCCCccceee----cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE
Q 010287          427 SEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC  502 (513)
Q Consensus       427 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~  502 (513)
                      .++.......    ..................+++++.|+.|++   ++............|...|++++|+|++++|++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV---YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE---EETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE---EECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            9874432111    111222223333455667777788999999   333222233344468999999999999999998


Q ss_pred             Ec-CCcEEEEe
Q 010287          503 AA-SNSLYMYY  512 (513)
Q Consensus       503 ~~-~~~~~i~~  512 (513)
                      ++ ++.+.+|+
T Consensus       352 ~~~dg~i~iw~  362 (408)
T 4a11_B          352 GSRDCNILAWV  362 (408)
T ss_dssp             EETTSCEEEEE
T ss_pred             ECCCCeEEEEe
Confidence            87 66788886

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.3e-31  Score=252.28  Aligned_cols=284  Identities=15%  Similarity=0.225  Sum_probs=222.2

Q ss_pred             ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (513)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (513)
                      ....|++..  ++ ......+|.+.|++++|+  +.+|++|+.||.|++||+.+++.                       
T Consensus       140 ~i~vwd~~~--~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-----------------------  191 (445)
T 2ovr_B          140 TLKVWSAVT--GK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-----------------------  191 (445)
T ss_dssp             CEEEEETTT--CC-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-----------------------
T ss_pred             cEEEEECCC--Cc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-----------------------
Confidence            345576654  11 222455799999999998  56999999999999999876653                       


Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ...+.+|.            ..|.+++|.    +..+++++.||+|++||+.+++....                     
T Consensus       192 ~~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~---------------------  234 (445)
T 2ovr_B          192 IHTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV---------------------  234 (445)
T ss_dssp             EEEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE---------------------
T ss_pred             EEEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE---------------------
Confidence            35567888            889999993    35899999999999999987754332                     


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  251 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  251 (513)
                                                                             +.+|...|.+++|  ++++++++ .
T Consensus       235 -------------------------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          235 -------------------------------------------------------LMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             -------------------------------------------------------EECCSSCEEEEEE--CSSCEEEEET
T ss_pred             -------------------------------------------------------EcCCcccEEEEEE--CCCEEEEEcC
Confidence                                                                   2467788999998  67888888 7


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      |+.|++||+++++...        .+.+|...|.++.|  ++ ..+++++.|+.|++||+++++.    ...+       
T Consensus       258 dg~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~-------  315 (445)
T 2ovr_B          258 DFMVKVWDPETETCLH--------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTL-------  315 (445)
T ss_dssp             TSCEEEEEGGGTEEEE--------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEE-------
T ss_pred             CCEEEEEECCCCcEeE--------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEE-------
Confidence            9999999998765443        45678999999999  55 7899999999999999998765    3333       


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                           .+|...+.++.+  ++.++++++. +.|++||+++ ++.+..+..+.....            .|++++|+  ++
T Consensus       316 -----~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~------------~v~~~~~~--~~  373 (445)
T 2ovr_B          316 -----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS------------AVTCLQFN--KN  373 (445)
T ss_dssp             -----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSS------------CEEEEEEC--SS
T ss_pred             -----cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCC------------CEEEEEEC--CC
Confidence                 334467877766  5678888775 9999999986 777877776322111            14577775  67


Q ss_pred             EEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          411 RVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      +|++|+.||.|++||+.+++.. ..+     ..+..++.+++|+|++.++++|+.||.
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             EEEEEeCCCeEEEEECCCCcee-eeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            9999999999999999988443 444     477889999999999999999999997

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-30  Score=243.95  Aligned_cols=282  Identities=11%  Similarity=0.126  Sum_probs=210.1

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCccc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      ....+.+|.            +.|++++|+|.. ++.+|++++.||.|++||+.+ +....                   
T Consensus        31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------------------   79 (368)
T 3mmy_A           31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------------------   79 (368)
T ss_dssp             CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred             eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence            334578888            889999997631 158999999999999999986 32110                   


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                                                              ..+.+|...|.+++|+|++++|++
T Consensus        80 --------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           80 --------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             --------------------------------------------------------EEEEECSSCEEEEEECTTSSEEEE
T ss_pred             --------------------------------------------------------EEeccccCCEEEEEECcCCCEEEE
Confidence                                                                    113578889999999999999999


Q ss_pred             E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      + .|+.|++||++++...         .+..|...|.+++|  +|++ .+|++++.||.|++||+++++.    +..+..
T Consensus       104 ~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~  169 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP----MMVLQL  169 (368)
T ss_dssp             EETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC----SEEEEC
T ss_pred             EcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE----EEEEec
Confidence            8 7999999999866533         34568999999999  8888 8999999999999999998765    333333


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      +             ..+.++.+.  ...++++. ++.+.+|+++...............              .+..+.+
T Consensus       170 ~-------------~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  220 (368)
T 3mmy_A          170 P-------------ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVAI  220 (368)
T ss_dssp             S-------------SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEEE
T ss_pred             C-------------CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEEE
Confidence            2             245666655  44666655 5999999998632222222211111              0225556


Q ss_pred             eCCCCE----EEEEeCCCcEEEEecCCCCc--cceeecCCCC------------ceeEEEEcCCCCceeeecCCCeEEEe
Q 010287          406 SGDGGR----VATGSYSNLFRVFGCSEGSA--ESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRRV  467 (513)
Q Consensus       406 s~~~~~----l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~~i~~~  467 (513)
                      .++...    +++++.||.|++|++.....  ....+..|..            ++.+++|+|++++|++++.||.|++ 
T Consensus       221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i-  299 (368)
T 3mmy_A          221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF-  299 (368)
T ss_dssp             EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE-
T ss_pred             cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE-
Confidence            555544    99999999999999987642  3356677765            7999999999999999999999999 


Q ss_pred             cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCC
Q 010287          468 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN  506 (513)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~  506 (513)
                        |+............|...|++++|+|++++||+++.+
T Consensus       300 --wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          300 --WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             --EETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             --EECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence              4433223333444688999999999999999988754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.3e-31  Score=246.07  Aligned_cols=304  Identities=14%  Similarity=0.119  Sum_probs=194.2

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|  ++.+|++++.||.|++||+.++.....                                         
T Consensus        12 ~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------------------------------   48 (351)
T 3f3f_A           12 DLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWE-----------------------------------------   48 (351)
T ss_dssp             SCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred             cceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence            8999999965  778999999999999999986532110                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                    . ...+.+|...|.+++|+|  ++++|+++ .|+.|++||++++......
T Consensus        49 ------------------------------~-~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~   97 (351)
T 3f3f_A           49 ------------------------------L-SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG   97 (351)
T ss_dssp             ------------------------------E-EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred             ------------------------------e-cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence                                          0 011357889999999999  58999998 7999999999876421100


Q ss_pred             cccC-ccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC-CCccccccccccEEE
Q 010287          270 VDVK-PANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-GTRSFFTEIIASISD  345 (513)
Q Consensus       270 ~~~~-~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~  345 (513)
                      ...+ ...+..|...|.+++|+|+  + .+|++++.||.|++||+++++....    +...... ........|...+.+
T Consensus        98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A           98 RRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRS----WTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             CSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTC----CEEEEEEESCSCCCSSCSCCCEE
T ss_pred             cCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcc----ccccccccccccccCCcccceeE
Confidence            0000 0245678999999999999  7 8999999999999999998765322    1110000 000112356688999


Q ss_pred             EEEeec---CCEEEEEeC-CeEEEEEccCCCCC--eeeeecccccccccccccccCCccceeeEEEeCCC----CEEEEE
Q 010287          346 IKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVATG  415 (513)
Q Consensus       346 i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~  415 (513)
                      ++|+|+   +.++++++. +.+.+|+... +..  +..+.+|...               |++++|+|++    ++|+++
T Consensus       173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             EEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEEE
T ss_pred             EEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEEE
Confidence            999997   889998876 7776666654 443  4555556544               5699999998    899999


Q ss_pred             eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEe
Q 010287          416 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWH  494 (513)
Q Consensus       416 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s  494 (513)
                      +.||.|++||+..+... .....+..........+....++.+..++.... ...+.............|...|++++|+
T Consensus       237 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  315 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN  315 (351)
T ss_dssp             ETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred             cCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence            99999999999876332 222233333334444444444444443333222 1112211112223344588999999999


Q ss_pred             CCCCEEEEEc-CCcEEEEe
Q 010287          495 PSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       495 p~~~~la~~~-~~~~~i~~  512 (513)
                      |++++||+++ ++.+++|.
T Consensus       316 ~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          316 LTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             SSSCCEEEEETTSCEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEe
Confidence            9999999888 66699986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.8e-31  Score=248.68  Aligned_cols=229  Identities=14%  Similarity=0.132  Sum_probs=150.4

Q ss_pred             eccccCCeEEEEecc--------CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287          228 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA  298 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~--------~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  298 (513)
                      +.+|.+.|.+++|+|        ++++|+++ .|++|++||++++....        .+..|...+.+++|+|++..+|+
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~  203 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI  203 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence            368999999999997        78899998 79999999998766544        34568889999999999866899


Q ss_pred             EEeCCCcEEEEEcCCcccccccceeecccc---------CCCCccccccccccEEEEEEe-ecCCEEEEEeC-CeEEEEE
Q 010287          299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------APGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD  367 (513)
Q Consensus       299 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~s-p~~~~l~~~~~-~~v~iwd  367 (513)
                      +++.|+.|++||+++++.............         .........+|...+.++.|+ |+++.|++++. +.+++||
T Consensus       204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence            999999999999998765322111100000         000111235677889999998 69999999875 9999999


Q ss_pred             ccCCCCCeeeeeccccccccccccc---ccCCccceeeEEEeC--CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCc
Q 010287          368 INMDSGPVATFQVHEHLRPKLCDLY---ENDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP  442 (513)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  442 (513)
                      +.. ++....+..+...........   ............|+|  ++.++++|+.||.|++||+.++. ....+..|..+
T Consensus       284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~~~~~~~  361 (393)
T 4gq1_A          284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-SNSIPIQLGMP  361 (393)
T ss_dssp             C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-CCEEEEECSSC
T ss_pred             Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-EEEEecCCCCc
Confidence            986 555555544433221111000   000000111344554  34467788899999999999874 44566778889


Q ss_pred             eeEEEEcCCCCceeeecCCCeEEE
Q 010287          443 MRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       443 v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      |.+++|+|+|++||+++.+|.+.+
T Consensus       362 V~svafspdG~~LA~as~~Gv~lv  385 (393)
T 4gq1_A          362 IVDFCWHQDGSHLAIATEGSVLLT  385 (393)
T ss_dssp             EEEEEECTTSSEEEEEESSEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEE
Confidence            999999999999999998887554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-30  Score=247.11  Aligned_cols=248  Identities=14%  Similarity=0.103  Sum_probs=183.2

Q ss_pred             ccceeEEEeecCCCceE-EEeecCCeEEEEEcc--CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      +.|.+++|+|  ++.+| ++++.||.|++||+.  +++......                                    
T Consensus       103 ~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------  144 (450)
T 2vdu_B          103 SYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------  144 (450)
T ss_dssp             CCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred             CceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence            5799999955  77786 888899999999998  554332211                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            ...|...|.+++|+|++++|+++ .++.|++|++.+......
T Consensus       145 --------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~  186 (450)
T 2vdu_B          145 --------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF  186 (450)
T ss_dssp             --------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC
T ss_pred             --------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc
Confidence                                                  12456779999999999999998 699999999986653320


Q ss_pred             ecccCccccccccCCeEEEEEeCC---CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      .    ...+.+|...|++++|+|+   + .+|++++.|+.|++||++++...    ..           ++.+|...|.+
T Consensus       187 ~----~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~-----------~~~~h~~~v~~  246 (450)
T 2vdu_B          187 T----QEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK-----------WLFGHKHFVSS  246 (450)
T ss_dssp             C----CCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE-----------ECCCCSSCEEE
T ss_pred             c----ceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee-----------eecCCCCceEE
Confidence            0    0145779999999999999   7 89999999999999999877642    11           12356689999


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc-----------cCCccceeeEEEeCCCCEEE
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-----------NDSIFDKFECCLSGDGGRVA  413 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~  413 (513)
                      ++|+ ++++|++++. +.|++||+.+ ++.+..+..+..... +....+           ...-..+..++|+|++++|+
T Consensus       247 ~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  323 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKP-YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA  323 (450)
T ss_dssp             EEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGG-GCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred             EEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhh-hhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence            9999 9999999875 9999999996 777777764431100 000000           01112366899999999999


Q ss_pred             EEe-CCCcEEEEec--CCCC--ccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287          414 TGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       414 ~~~-~dg~i~vwd~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      +++ .|+.|++|++  .++.  .....+..+ ..+.+++|+|++.+++.++.
T Consensus       324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred             EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence            998 8999999999  4332  233566677 78999999996545554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.9e-30  Score=243.51  Aligned_cols=249  Identities=16%  Similarity=0.175  Sum_probs=197.6

Q ss_pred             ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (513)
                      ..+.+|.            +.|++++|+|  ++.+|++++.||.|++||+.........                     
T Consensus         5 ~~~~~h~------------~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------   49 (379)
T 3jrp_A            5 VIANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID---------------------   49 (379)
T ss_dssp             CCEEECC------------CCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEE---------------------
T ss_pred             EEecCCc------------ccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeee---------------------
Confidence            4577888            8999999965  7789999999999999999844322111                     


Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-  250 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-  250 (513)
                                                                           .+.+|...|.+++|+++  +++|+++ 
T Consensus        50 -----------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A           50 -----------------------------------------------------TLTGHEGPVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             -----------------------------------------------------EECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             -----------------------------------------------------EecCCCCcEEEEEeCCCCCCCEEEEec
Confidence                                                                 13578889999999977  8999998 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                      .|+.|++||+++++....      ..+..|...|.+++|+|+  + .+|++++.|+.|++||++++....  ...     
T Consensus        77 ~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~-----  142 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII-----  142 (379)
T ss_dssp             TTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEE-----
T ss_pred             cCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEE-----
Confidence            799999999987642111      145678999999999999  7 899999999999999998764311  111     


Q ss_pred             CCCCccccccccccEEEEEEee-------------cCCEEEEEeC-CeEEEEEccCCCC---Ceeeeecccccccccccc
Q 010287          329 APGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSG---PVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp-------------~~~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~  391 (513)
                             +.+|...|.+++|+|             ++.++++++. +.|++||++....   ....+..|...       
T Consensus       143 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-------  208 (379)
T 3jrp_A          143 -------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-------  208 (379)
T ss_dssp             -------EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-------
T ss_pred             -------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-------
Confidence                   345667899999999             6899999875 9999999986222   22345555544       


Q ss_pred             cccCCccceeeEEEeCC---CCEEEEEeCCCcEEEEecCCCCcc----ceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287          392 YENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV  464 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  464 (513)
                              |.+++|+|+   +++|++++.||.|++||+.++...    ......|...+.+++|+|++++|++++.||.|
T Consensus       209 --------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  280 (379)
T 3jrp_A          209 --------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  280 (379)
T ss_dssp             --------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred             --------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence                    559999999   899999999999999999976322    12333488899999999999999999999999


Q ss_pred             EE
Q 010287          465 RR  466 (513)
Q Consensus       465 ~~  466 (513)
                      ++
T Consensus       281 ~i  282 (379)
T 3jrp_A          281 TL  282 (379)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=6.3e-30  Score=238.08  Aligned_cols=288  Identities=10%  Similarity=0.116  Sum_probs=197.8

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ...|.+.|++++|+|||++||+|+.+| ++||+..+.+..                         ...+.          
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------------~~~~~----------   58 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------------MSQEM----------   58 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------------EEEEC----------
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------------eeeec----------
Confidence            356899999999999999999999875 789997654321                         11111          


Q ss_pred             ccccceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          111 IEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                        ..+..+++.+  +++.+ ++++.|++|++||+.+++.....                                     
T Consensus        59 --~~~~~~~~~~--~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-------------------------------------   97 (355)
T 3vu4_A           59 --RHLSKVRMLH--RTNYVAFVTGVKEVVHIWDDVKKQDVSRI-------------------------------------   97 (355)
T ss_dssp             --SCCCEEEECT--TSSEEEEECSSTTEEEEEETTTTEEEEEE-------------------------------------
T ss_pred             --CCeEEEEEcC--CCCEEEEEECCccEEEEEECCCCcEEEEE-------------------------------------
Confidence              2377778855  34455 56788899999999988754421                                     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                                              .+...|.+++++++  .++++.++.|++||+.+...... 
T Consensus        98 ----------------------------------------~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~-  134 (355)
T 3vu4_A           98 ----------------------------------------KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT-  134 (355)
T ss_dssp             ----------------------------------------ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS-
T ss_pred             ----------------------------------------ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE-
Confidence                                                    23346889999875  45556788999999987622221 


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCcEEEEEcCCcccccccceeeccccCCCC-ccccccccccEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIK  347 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~  347 (513)
                            .+..   ....+++++ . .+.++ ++.||.|++||++++............ ....+ ...+.+|.+.|.+++
T Consensus       135 ------~~~~---~~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~-~~~~p~~~~~~~h~~~v~~~~  202 (355)
T 3vu4_A          135 ------DDIR---FGGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ-KAILGKGVLIKAHTNPIKMVR  202 (355)
T ss_dssp             ------CCEE---EEEEEEEET-T-EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEE
T ss_pred             ------Eecc---CCceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCccccccccccc-cccCcccEEEEccCCceEEEE
Confidence                  2222   445566777 3 34333 688999999999876421100000000 00001 223567889999999


Q ss_pred             EeecCCEEEEEeC-Ce-EEEEEccCCCCCeeeee-c-ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287          348 FARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV  423 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~-v~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  423 (513)
                      |+|++++|++|+. ++ |++||+++ ++.+..+. + |...               |++++|+|++++|++++.|+.|++
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~v~i  266 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWTLHV  266 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCEEEE
Confidence            9999999999885 98 99999997 88888887 4 6554               569999999999999999999999


Q ss_pred             EecCCCCccc-eeecC---------------------CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          424 FGCSEGSAES-TTLEA---------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       424 wd~~~~~~~~-~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ||+....... ..+..                     ...+...++|+++++.+++++.||.+++
T Consensus       267 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET  331 (355)
T ss_dssp             EESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred             EEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence            9997653211 11111                     1223467899999999999999999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=5.4e-30  Score=245.36  Aligned_cols=265  Identities=15%  Similarity=0.213  Sum_probs=199.8

Q ss_pred             cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                      ...+.|.+.|++++|+|. ++.+|++++.||.|++|++........                             +.+. 
T Consensus       122 ~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------~~~~-  170 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------PSGE-  170 (430)
T ss_dssp             EEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------TTCC-
T ss_pred             EEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccC-----------------------------cccc-
Confidence            334445589999999762 256899999999999999976421100                             0000 


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCC
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS  263 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~  263 (513)
                                                         .... ..+.+|...|.+++|+|+++ +|++| .||.|++|++...
T Consensus       171 -----------------------------------~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  214 (430)
T 2xyi_A          171 -----------------------------------CQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT  214 (430)
T ss_dssp             -----------------------------------CCCS-EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred             -----------------------------------CCCc-EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence                                               0001 11468889999999999988 89888 7999999999874


Q ss_pred             cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      ......+.. ...+..|...|.+++|+|++..+|++++.||.|++||++++... +....            +..|...|
T Consensus       215 ~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~------------~~~~~~~v  280 (430)
T 2xyi_A          215 PKEHRVIDA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHT------------VDAHTAEV  280 (430)
T ss_dssp             CBGGGEEEC-SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEE------------EECCSSCE
T ss_pred             CCCCceecc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeE------------eecCCCCe
Confidence            322111100 12456799999999999955589999999999999999876311 11222            23456789


Q ss_pred             EEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCc
Q 010287          344 SDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNL  420 (513)
Q Consensus       344 ~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  420 (513)
                      ++++|+|+++ ++++|+. +.|++||++....++..+..|...               |++++|+|+++ +|++++.|+.
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTSC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCCc
Confidence            9999999987 5777775 999999999756678888877665               56999999995 6889999999


Q ss_pred             EEEEecCCCC-------------ccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287          421 FRVFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~  466 (513)
                      |++||+....             .......+|...+..+.|+|+++ ++++++.|+.|++
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i  405 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV  405 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence            9999998732             33456678999999999999999 8899999999999

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=1.6e-30  Score=248.96  Aligned_cols=270  Identities=16%  Similarity=0.236  Sum_probs=199.1

Q ss_pred             cccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           29 GEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        29 ~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      .....|.+.|++++|+|+ +.+||+|+.+|.|+||++........             ..........+.+|.       
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------  181 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------  181 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS-------
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC-------
Confidence            346789999999999997 78999999999999999875321100             000112234566777       


Q ss_pred             cccccccceeEEEeecCCCc-eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          108 SLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                           ..|.+++|+|  ++. +|++++.||.|++|++..+.......                                 
T Consensus       182 -----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------------------------------  221 (430)
T 2xyi_A          182 -----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHRVI---------------------------------  221 (430)
T ss_dssp             -----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGGEE---------------------------------
T ss_pred             -----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCcee---------------------------------
Confidence                 8899999966  555 89999999999999998743110000                                 


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                         .. ...+.+|...|.+++|+| ++.+|+++ .|+.|++||+++..
T Consensus       222 -----------------------------------~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~  265 (430)
T 2xyi_A          222 -----------------------------------DA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN  265 (430)
T ss_dssp             -----------------------------------EC-SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred             -----------------------------------cc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence                                               00 011357888999999999 67788888 79999999999763


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      ....+     ..+..|...|++++|+|++..+|++++.||.|++||+++....   +..            +..|...|.
T Consensus       266 ~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~------------~~~h~~~v~  325 (430)
T 2xyi_A          266 TSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHS------------FESHKDEIF  325 (430)
T ss_dssp             SSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEE------------EECCSSCEE
T ss_pred             CCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEE------------eecCCCCEE
Confidence            11111     1446789999999999998568999999999999999874321   223            344568899


Q ss_pred             EEEEeecCC-EEEEEe-CCeEEEEEccCCC-------------CCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          345 DIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       345 ~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                      +++|+|+++ +|++++ ++.|++||+...+             ..+..+.+|...               |.+++|+|++
T Consensus       326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~~  390 (430)
T 2xyi_A          326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPNE  390 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSSS
T ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCCC
Confidence            999999985 577766 4999999998522             233333444433               5599999999


Q ss_pred             C-EEEEEeCCCcEEEEecCCC
Q 010287          410 G-RVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       410 ~-~l~~~~~dg~i~vwd~~~~  429 (513)
                      + +|++++.||.|++|++...
T Consensus       391 ~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          391 PWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTEEEEEETTSEEEEEEECHH
T ss_pred             CCEEEEEECCCCEEEeEcccc
Confidence            9 8999999999999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=6.2e-31  Score=249.96  Aligned_cols=252  Identities=13%  Similarity=0.133  Sum_probs=191.0

Q ss_pred             eccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          228 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       228 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      +.+|...|.+++|+| ++++|++| .||.|++||+.++....... .....+.+|...|.+++|+|++.++|++++.|+.
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            358899999999999 89999998 79999999998764211000 0012567899999999999997579999999999


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee-ecccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEH  383 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~  383 (513)
                      |++||+++++.    ...+.          ..+|...|.+++|+|++.+|++++. +.|++||++. ++.+..+ ..|..
T Consensus       156 i~iwd~~~~~~----~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~  220 (402)
T 2aq5_A          156 ILVWDVGTGAA----VLTLG----------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAEKDRPHEG  220 (402)
T ss_dssp             EEEEETTTTEE----EEEEC----------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECSSCS
T ss_pred             EEEEECCCCCc----cEEEe----------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-CceeeeeccCCCC
Confidence            99999998765    22321          0345578999999999999999875 9999999996 7777766 55554


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEE---eCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCcee-ee
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRP-LG  458 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~  458 (513)
                      ..              +..+.|+|++++|++|   +.|+.|++||+.+......... .+...+..+.|+|++++|+ +|
T Consensus       221 ~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          221 TR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             SS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred             Cc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence            31              2389999999999999   7899999999998755333333 5677899999999999986 56


Q ss_pred             cCCCeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          459 SLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       459 ~~d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      +.|+.|++.  ....+.  ........|...|.+++|+|++.++++ +++.+.+|.
T Consensus       287 ~~dg~i~i~d~~~~~~~--~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~  339 (402)
T 2aq5_A          287 KGDSSIRYFEITSEAPF--LHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYK  339 (402)
T ss_dssp             TTCSCEEEEEECSSTTC--EEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEE
T ss_pred             cCCCeEEEEEecCCCcc--eEeecccccCCcccceEEeccccccee-cceeEEEEE
Confidence            689999992  222110  001112235689999999999998875 444677775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=1.1e-29  Score=243.85  Aligned_cols=266  Identities=18%  Similarity=0.264  Sum_probs=212.9

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|    ++.++++++.||.|++||+.+++....                                         
T Consensus       134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~-----------------------------------------  168 (435)
T 1p22_A          134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI-----------------------------------------  168 (435)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred             CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence            67888888    567999999999999999987764332                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|...|.+++|  ++++|++| .||.|++||+++++...    
T Consensus       169 -----------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~----  207 (435)
T 1p22_A          169 -----------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN----  207 (435)
T ss_dssp             -----------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE----
T ss_pred             -----------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE----
Confidence                                               3578888999998  77899998 79999999999776443    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.+++|++   ..+++++.||.|++||++++..... ..            .+.+|...|.+++|  +
T Consensus       208 ----~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-~~------------~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          208 ----TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-RR------------VLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             ----EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-EE------------EECCCSSCEEEEEE--E
T ss_pred             ----EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-ee------------EecCCCCcEEEEEe--C
Confidence                4567999999999974   5899999999999999987654210 01            13456688999998  7


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +.++++|+. +.|++||+++ ++.+..+..|...               +.++.|  ++++|++|+.||.|++||+.++ 
T Consensus       266 ~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-  326 (435)
T 1p22_A          266 DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIECG-  326 (435)
T ss_dssp             TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC-
T ss_pred             CCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCCC-
Confidence            889999875 9999999997 8888888877765               346677  5789999999999999999987 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---------cCCccccccCCeeEEEEeCCCCEEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---------ANGNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                      .....+.+|..++.++.+  ++.+|++|+.||.|++   |+.....         .......|...|.+++|  ++++|+
T Consensus       327 ~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  399 (435)
T 1p22_A          327 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV---WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV  399 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE---EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred             CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE---EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE
Confidence            455788899999999998  7889999999999999   2211100         12233468899999999  778888


Q ss_pred             EEc-CCcEEEEe
Q 010287          502 CAA-SNSLYMYY  512 (513)
Q Consensus       502 ~~~-~~~~~i~~  512 (513)
                      +++ ++.+.+|+
T Consensus       400 s~s~Dg~i~iwd  411 (435)
T 1p22_A          400 SSSHDDTILIWD  411 (435)
T ss_dssp             ECCSSSEEEEEC
T ss_pred             EEeCCCEEEEEE
Confidence            888 77788886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=230.80  Aligned_cols=238  Identities=15%  Similarity=0.228  Sum_probs=181.2

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .+|...|.+++|+|++++|++| .|++|++||+++++...        .+.+|...+.++.+.+   ..+++++.++.++
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~--------~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~  132 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--------NMTSHSARVGSLSWNS---YILSSGSRSGHIH  132 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEEET---TEEEEEETTSEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE--------EecCccceEEEeecCC---CEEEEEecCCceE
Confidence            4677789999999999999999 79999999999776543        4567888887766654   6899999999999


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe----eeeeccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV----ATFQVHE  382 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~----~~~~~~~  382 (513)
                      +|+.......   ...            +.+|...+..+.++++++++++++. +.|++||+++ ++..    .....+.
T Consensus       133 ~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~  196 (318)
T 4ggc_A          133 HHDVRVAEHH---VAT------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP-GEGGWVPLQTFTQHQ  196 (318)
T ss_dssp             EEETTSSSCE---EEE------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC-BTTBSCCSEEECCCC
T ss_pred             eeecCCCcee---EEE------------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC-CcccccceeeecccC
Confidence            9998765432   122            3456678999999999999999875 9999999986 3322    2222222


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEE---EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRV---ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-  458 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  458 (513)
                      ..               |..+.++|++..+   ++++.++.|++||......  .....+...+..+.++++++.++++ 
T Consensus       197 ~~---------------v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          197 GA---------------VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             SC---------------EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             Cc---------------eEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeeeeeeeecccccceEEEE
Confidence            22               4578899877643   3667889999999986632  3445567788999999999988654 


Q ss_pred             -cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          459 -SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       459 -~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                       +.|+.|++   |+....+......+|.+.|++++|+||+++||+++ |+.++||+.
T Consensus       260 g~~d~~i~i---wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          260 GFAQNQLVI---WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             CTTTCCEEE---EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EcCCCEEEE---EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence             48999999   43332233344556999999999999999999888 667889963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-30  Score=246.49  Aligned_cols=258  Identities=10%  Similarity=0.102  Sum_probs=162.2

Q ss_pred             cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--------CCCeEEEEE
Q 010287          230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAYS  300 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~l~~~  300 (513)
                      .|........+.+++.+|+++ .|++|++||.+++.......   ...+.+|...|.+++|+|        ++ ++|+++
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~  162 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASV  162 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEEE
Confidence            444555556667788889988 79999999998765322110   025789999999999998        66 899999


Q ss_pred             eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeee
Q 010287          301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~  378 (513)
                      +.|++|+|||++++...    ..            +.+|...+.+++|+|++. +|++++. ++|++||+++ ++.....
T Consensus       163 s~D~tv~~Wd~~~~~~~----~~------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~~  225 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPI----LA------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEEN  225 (393)
T ss_dssp             ETTSEEEEEEEETTEEE----EE------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC-----
T ss_pred             ECCCeEEEEECCCCcee----ee------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Ccccccc
Confidence            99999999999876542    11            234557899999999874 7888775 9999999986 4433332


Q ss_pred             eccccccccc----------ccccccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE-
Q 010287          379 QVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-  446 (513)
Q Consensus       379 ~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-  446 (513)
                      ..+.......          ...........+..+.|+ ||++.|++++.|+.+++||+..+. ....+..|...+..+ 
T Consensus       226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKN  304 (393)
T ss_dssp             -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------C
T ss_pred             cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-CCceEeeecCccccEE
Confidence            2211110000          000000111134578886 899999999999999999998763 223333333333222 


Q ss_pred             -----------------EEcC--CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287          447 -----------------VQTP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS  507 (513)
Q Consensus       447 -----------------~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~  507 (513)
                                       .+.|  ++.++++|+.||.|++   |+............|..+|.+++|||||++||++++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l---wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL---INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE---EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE---EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                             2322  3446788999999999   44333233444567889999999999999999999999


Q ss_pred             EEEEe
Q 010287          508 LYMYY  512 (513)
Q Consensus       508 ~~i~~  512 (513)
                      +.+|.
T Consensus       382 v~lvr  386 (393)
T 4gq1_A          382 VLLTR  386 (393)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99885

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-30  Score=247.74  Aligned_cols=317  Identities=10%  Similarity=0.134  Sum_probs=215.8

Q ss_pred             cccccccccee-cc-ccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEee---CCCCCCCccCccccccccccCC
Q 010287           13 QPLEWKFSQVF-GE-RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTRDNGGQRRDLEMMDYSMSRH   87 (513)
Q Consensus        13 ~~~~w~~~~~~-~~-~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~   87 (513)
                      ....|++...- +. ........|...|++++|+|++++|++|+.||.|++||+.   .++..                 
T Consensus        87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----------------  149 (437)
T 3gre_A           87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-----------------  149 (437)
T ss_dssp             EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-----------------
T ss_pred             eEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-----------------
Confidence            45567765410 11 1112233699999999999999999999999999999985   33211                 


Q ss_pred             CcceEeccccCCCCccccccccc-----ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCccc
Q 010287           88 PEFRYKTEFQSHEPEFDYLKSLE-----IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA  162 (513)
Q Consensus        88 ~~~~~~~~~~~h~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  162 (513)
                            ..+.+|.     +..+.     ....+.++.+..++++.++++++.|+.|++||+++++.......        
T Consensus       150 ------~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------  210 (437)
T 3gre_A          150 ------KFLNCEC-----IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN--------  210 (437)
T ss_dssp             ------EEEEEEE-----EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred             ------eccccce-----eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------
Confidence                  1111110     11111     22678888877677889999999999999999988765433110        


Q ss_pred             CCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc
Q 010287          163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS  242 (513)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  242 (513)
                                                                                        ..|...|.+++|+|
T Consensus       211 ------------------------------------------------------------------~~h~~~v~~~~~s~  224 (437)
T 3gre_A          211 ------------------------------------------------------------------SPRHGAVSSICIDE  224 (437)
T ss_dssp             ------------------------------------------------------------------CGGGCCEEEEEECT
T ss_pred             ------------------------------------------------------------------CCCCCceEEEEECC
Confidence                                                                              12677899999999


Q ss_pred             CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC----CCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287          243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALC  317 (513)
Q Consensus       243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~  317 (513)
                      ++++|++| .||.|++||++++.....+       ...|...|.+++|+|    ++ .+|++++.||.|++||+++++. 
T Consensus       225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~-  295 (437)
T 3gre_A          225 ECCVLILGTTRGIIDIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC-  295 (437)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE-
T ss_pred             CCCEEEEEcCCCeEEEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE-
Confidence            99999998 7999999999975543321       125677899997665    55 7999999999999999998765 


Q ss_pred             cccceeeccccCCCCc------------ccccc--ccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287          318 DTHSKLFEEQEAPGTR------------SFFTE--IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~------------~~~~~--~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                         ...+..+......            ..+.+  |...|.+++|+ ++++|++|+. +.|++||+.. ++....+.+|.
T Consensus       296 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~  370 (437)
T 3gre_A          296 ---QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPS  370 (437)
T ss_dssp             ---EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC-
T ss_pred             ---EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEeccc
Confidence               3333332211110            01233  78899999999 8889999874 9999999996 77778887765


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC--CCceeeecC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS--RPSRPLGSL  460 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  460 (513)
                      .....            +....++++..+++..        |+.... ........|...|.++.+.++  +.+|++|+.
T Consensus       371 ~~~~~------------~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~  429 (437)
T 3gre_A          371 RFSDV------------FIPTQVTANLTMLLRK--------MKRTST-HSVDDSLYHHDIINSISTCEVDETPLLVACDN  429 (437)
T ss_dssp             -CCCE------------EEEEEEETTEEEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred             ccCce------------EEEEEeecceEEEEEe--------cccccc-cccCcccccccceeeEeeeccCCceEEEEEcC
Confidence            43211            2255666666555544        222222 222455679999999999988  789999999


Q ss_pred             CCeEEE
Q 010287          461 SGVVRR  466 (513)
Q Consensus       461 d~~i~~  466 (513)
                      ||.|++
T Consensus       430 dG~I~i  435 (437)
T 3gre_A          430 SGLIGI  435 (437)
T ss_dssp             TSCEEE
T ss_pred             CceEEE
Confidence            999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-30  Score=244.23  Aligned_cols=229  Identities=9%  Similarity=0.049  Sum_probs=170.5

Q ss_pred             ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      .+|...|.+++|+|+|      .++.+.+|+.+.. ...        .+ .|...|.+++|+|+| ..||+++.||.|++
T Consensus        49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~--------~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~i  111 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLL--------NS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSV  111 (588)
T ss_dssp             SSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSS--------TT-SCSCCEEEEEECSSS-SCEEEEETTSCEEE
T ss_pred             cCCCccEEEEEECCCC------CcceEEEEeCCCc-eEe--------ec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEE
Confidence            4788889999999998      4555555554311 111        22 357889999999999 99999999999999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC-------eeeee-
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP-------VATFQ-  379 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~-------~~~~~-  379 (513)
                      ||...  .    +..++ +..+..       ...+.+++|||||++|++|++ |+|++||+.. +..       +.++. 
T Consensus       112 wd~~~--~----l~~l~-~~~~~~-------~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          112 FKDNK--M----LTNLD-SKGNLS-------SRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESSIRL  176 (588)
T ss_dssp             EETTE--E----EEECC-CSSCST-------TTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEEEEC
T ss_pred             EeCCc--e----eeecc-CCCccc-------cccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccceeeeeeec
Confidence            99543  1    23333 221000       135999999999999999886 9999999985 432       45553 


Q ss_pred             ---cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc--ceee-cCCCCceeEEEEcCCCC
Q 010287          380 ---VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE--STTL-EASKNPMRRQVQTPSRP  453 (513)
Q Consensus       380 ---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~  453 (513)
                         +|...               |.+++|+|||  +++++.|+.|++||+..+...  ..++ .+|...|.+++|+  ++
T Consensus       177 ~~~gh~~~---------------V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          177 SDAGSKDW---------------VTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             SCTTCCCC---------------EEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             cccccccc---------------EEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence               33333               5699999999  888899999999999876432  2456 4888999999999  68


Q ss_pred             ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE--eCCCCEEEEEcCCcEEEEe
Q 010287          454 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW--HPSENSIACAASNSLYMYY  512 (513)
Q Consensus       454 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--sp~~~~la~~~~~~~~i~~  512 (513)
                      .||+++ ++.|++   |+...........+|...|..++|  +||+..|+++..++..+|.
T Consensus       238 ~LASa~-~~tIkL---Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~  294 (588)
T 2j04_A          238 KVVLTC-PGYVHK---IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL  294 (588)
T ss_dssp             EEEEEC-SSEEEE---EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred             EEEEEe-CCeEEE---EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence            999887 699999   444332232233369999999999  9999999999977767775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=236.52  Aligned_cols=238  Identities=10%  Similarity=0.085  Sum_probs=177.4

Q ss_pred             ccccCCeEEEEeccCCCEE-EEE-cCCeEEEEEcC--CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          229 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      .+|...|.+++|+|++++| +++ .|+.|++||+.  +++....+      ....|...|.+++|+|++ .+|++++.+|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g  171 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG  171 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence            4677789999999999996 777 69999999998  55433221      112567889999999999 8999999999


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCCCeee-ee
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ  379 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~~~~-~~  379 (513)
                      .|++|++.++........            .+.+|...|.+++|+|+   +++|++++. +.|++||++. +..+.. +.
T Consensus       172 ~v~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~  238 (450)
T 2vdu_B          172 DVYSIDINSIPEEKFTQE------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF  238 (450)
T ss_dssp             EEEEEETTSCCCSSCCCC------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred             cEEEEecCCcccccccce------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence            999999987664211111            24567789999999999   999999875 9999999986 666665 44


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec----------------------
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----------------------  437 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------------  437 (513)
                      +|...               |++++|+ ++++|++++.|+.|++||+.++... ..+.                      
T Consensus       239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC-------
T ss_pred             CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhccccccccccc
Confidence            66654               5589999 9999999999999999999987433 3333                      


Q ss_pred             ---CCCCceeEEEEcCCCCceeeec-CCCeEEEecC--CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          438 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       438 ---~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                         .....+..+.++|++++|++++ .|+.|++...  ..............+ ..|.+++|+|++.++++++
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence               2235688999999999999998 8999999222  110100111112223 8899999999654444444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=6e-29  Score=240.02  Aligned_cols=274  Identities=14%  Similarity=0.141  Sum_probs=191.0

Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      +.+.|++++|+|  ++.+|++|+.||.|++|++.+++.....                                      
T Consensus        27 ~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------------------------------   66 (447)
T 3dw8_B           27 EADIISTVEFNH--SGELLATGDKGGRVVIFQQEQENKIQSH--------------------------------------   66 (447)
T ss_dssp             GGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC-----CC--------------------------------------
T ss_pred             ccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecCCCCCCcc--------------------------------------
Confidence            348899999965  7889999999999999999876521100                                      


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc------------CCeEEEEeccCC--CEEEEE-cCCeE
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDLRI  255 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~-~d~~i  255 (513)
                                  ..+..+              .. ..+.+|.            ..|.+++|+|++  ..|+++ .|+.|
T Consensus        67 ------------~~~~~~--------------~~-~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i  119 (447)
T 3dw8_B           67 ------------SRGEYN--------------VY-STFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI  119 (447)
T ss_dssp             ------------CCCCEE--------------EE-EEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred             ------------ccccee--------------Ee-cccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence                        000000              00 1134565            779999999998  788887 79999


Q ss_pred             EEEEcCCCcceeeecccCc--------------------------------cccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287          256 NLWNLEISNQSFNIVDVKP--------------------------------ANMEDLTEVITSAEFHPTHCNMLAYSSSK  303 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  303 (513)
                      ++||+.+.......+....                                ....+|...|.+++|+|++ .+|+++ .|
T Consensus       120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d  197 (447)
T 3dw8_B          120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DD  197 (447)
T ss_dssp             EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CS
T ss_pred             EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CC
Confidence            9999975432111000000                                0136799999999999998 899998 89


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCC----eee
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----VAT  377 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~----~~~  377 (513)
                      +.|++||+++....   ...+....     ..+.+|...|.+++|+|++ .+|++|+. +.|++||++. ++.    +..
T Consensus       198 ~~i~iwd~~~~~~~---~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~  268 (447)
T 3dw8_B          198 LRINLWHLEITDRS---FNIVDIKP-----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKL  268 (447)
T ss_dssp             SEEEEEETTEEEEE---EEEEECCC-----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEE
T ss_pred             CeEEEEECCCCCce---eeeeeccc-----ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeE
Confidence            99999999853321   22221111     1256778899999999998 89999875 9999999996 554    566


Q ss_pred             eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCce--------------
Q 010287          378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM--------------  443 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v--------------  443 (513)
                      +..|..........   .....|.+++|+|++++|++++. +.|++||+.+.......+..|...+              
T Consensus       269 ~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          269 FEEPEDPSNRSFFS---EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             ECCC-----CCHHH---HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eccCCCcccccccc---ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence            66665310000000   00012569999999999999999 9999999987445567777775322              


Q ss_pred             -eEEEEcCCCCceeeecCCCeEEE
Q 010287          444 -RRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       444 -~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       ..++|+|++++|++|+.||.|++
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~i  368 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRM  368 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEE
T ss_pred             ceEEEECCCCCEEEEeccCCEEEE
Confidence             24899999999999999999999

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.6e-28  Score=233.51  Aligned_cols=279  Identities=9%  Similarity=0.107  Sum_probs=205.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..+.+++|+|  ++.++++++.|+.|++||+.+++........                                     
T Consensus       123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------------------------------  163 (433)
T 3bws_A          123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-------------------------------------  163 (433)
T ss_dssp             SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred             CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence            4577999966  6677788888999999999988654321110                                     


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                        ...+|...|.+++|++++++++++ .|+.|++||+++++...    
T Consensus       164 ----------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~----  205 (433)
T 3bws_A          164 ----------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA----  205 (433)
T ss_dssp             ----------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE----
T ss_pred             ----------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE----
Confidence                                              024677789999999999999998 79999999998765443    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+..|...+.+++|+|++..++++++.|+.|++||+++++.    ...+...             ..+.+++|+|+
T Consensus       206 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~~  264 (433)
T 3bws_A          206 ----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE----IRKTDKI-------------GLPRGLLLSKD  264 (433)
T ss_dssp             ----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEECCCC-------------SEEEEEEECTT
T ss_pred             ----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE----EEEecCC-------------CCceEEEEcCC
Confidence                34567888999999999944446666899999999988764    2222221             45899999999


Q ss_pred             CCEEEEEe---------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE-EEEeCCCcE
Q 010287          352 GRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLF  421 (513)
Q Consensus       352 ~~~l~~~~---------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i  421 (513)
                      ++++++++         ++.|++||+.. ++.+..+.. ...               +..++|+|+++.+ ++++.|+.|
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------~~~~~~~~~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIGP-PGN---------------KRHIVSGNTENKIYVSDMCCSKI  327 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEEE-EEC---------------EEEEEECSSTTEEEEEETTTTEE
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCC-CcEEeeccC-CCC---------------cceEEECCCCCEEEEEecCCCEE
Confidence            99988865         47999999985 555544422 211               3479999999765 566899999


Q ss_pred             EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC---------------CCeEEEecCCCCCccccCCccccccC
Q 010287          422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFDFSM  486 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~~~~~~~~~~~~~~~~~~~~  486 (513)
                      ++||+.++ +....+. +...+..++++|+++++++++.               ||.|++.+....   +. ...+....
T Consensus       328 ~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~-~~~~~~~~  401 (433)
T 3bws_A          328 EVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TV-KEFWEAGN  401 (433)
T ss_dssp             EEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EE-EEEEECSS
T ss_pred             EEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cE-EEEecCCC
Confidence            99999976 3334443 5677889999999998887765               568888322111   11 11223356


Q ss_pred             CeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287          487 KLLHLAWHPSENSIACAA--SNSLYMYY  512 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~--~~~~~i~~  512 (513)
                      .+.+++|+|++++|++++  ++.+.+|.
T Consensus       402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          402 QPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             SEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            799999999999998664  78899986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.9e-29  Score=253.04  Aligned_cols=248  Identities=16%  Similarity=0.174  Sum_probs=196.3

Q ss_pred             cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                      .+.+|.            +.|++++|+|  ++.++++++.||+|++||+..+......                      
T Consensus         4 ~l~gH~------------~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~----------------------   47 (753)
T 3jro_A            4 IANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID----------------------   47 (753)
T ss_dssp             ----CC------------CCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEE----------------------
T ss_pred             ecccCc------------ceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccce----------------------
Confidence            467888            8999999965  7779999999999999999854322211                      


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-c
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-D  251 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~  251 (513)
                                                                          .+.+|...|.+++|+++  +++|++| .
T Consensus        48 ----------------------------------------------------~l~~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A           48 ----------------------------------------------------TLTGHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             ----------------------------------------------------EECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             ----------------------------------------------------eccCCcCceEEEEecCCCCCCEEEEEeC
Confidence                                                                13578899999999988  9999998 7


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                      ||.|++||+.++.....      ..+..|...|.+++|+|+  + ..+++++.||.|++||++++....  ...      
T Consensus        76 Dg~I~vwd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~------  140 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII------  140 (753)
T ss_dssp             TSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEE------
T ss_pred             CCeEEEEECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeE------
Confidence            99999999987642111      145779999999999999  7 899999999999999998764321  111      


Q ss_pred             CCCccccccccccEEEEEEee-------------cCCEEEEEeC-CeEEEEEccCCC---CCeeeeeccccccccccccc
Q 010287          330 PGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp-------------~~~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~  392 (513)
                            +.+|...|.+++|+|             ++.++++|+. |.|++||++...   .....+.+|...        
T Consensus       141 ------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--------  206 (753)
T 3jro_A          141 ------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--------  206 (753)
T ss_dssp             ------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--------
T ss_pred             ------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc--------
Confidence                  345668899999999             5889999875 999999998632   233455556554        


Q ss_pred             ccCCccceeeEEEeCC---CCEEEEEeCCCcEEEEecCCCCc----cceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          393 ENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                             |++++|+|+   +++|++++.||.|++||+.++..    .......|...+.+++|+|+++++++|+.||.|+
T Consensus       207 -------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          207 -------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             -------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred             -------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence                   569999999   89999999999999999987632    2234456888999999999999999999999999


Q ss_pred             E
Q 010287          466 R  466 (513)
Q Consensus       466 ~  466 (513)
                      +
T Consensus       280 v  280 (753)
T 3jro_A          280 L  280 (753)
T ss_dssp             C
T ss_pred             E
Confidence            9

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.1e-28  Score=224.50  Aligned_cols=230  Identities=11%  Similarity=0.013  Sum_probs=156.2

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC-c-cccccccCCeEEEEEeC--CCCeEEEEEeCCCcEEEE
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK-P-ANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~vw  309 (513)
                      |.++.|+|+   ++++ .|++|++|+.............+ . ....+|...|.+++|+|  ++ .++++++.||.|++|
T Consensus        79 v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~w  154 (343)
T 3lrv_A           79 PRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQ  154 (343)
T ss_dssp             CCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEE
T ss_pred             ceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEE
Confidence            555667776   7777 79999999876321111100000 0 01124668899999999  88 899999999999999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe-eeeec-cccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV-ATFQV-HEHLRP  386 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~-~~~~~-~~~~~~  386 (513)
                      |+++++.    ......           .+...+.+++|+|++.+|++|+. +.|++||+++ ++.+ ..+.. |...  
T Consensus       155 d~~~~~~----~~~~~~-----------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~--  216 (343)
T 3lrv_A          155 SYEDDSQ----YIVHSA-----------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVDEEAK--  216 (343)
T ss_dssp             ESSSSCE----EEEECC-----------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCCTTSC--
T ss_pred             ECCCCcE----EEEEec-----------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEeccCCCC--
Confidence            9998765    222211           12356999999999999999875 9999999997 5555 66766 6654  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc--eeecCCCCcee--EEEEcCCCCceeeecC-C
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES--TTLEASKNPMR--RQVQTPSRPSRPLGSL-S  461 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~--~~~~~~~~~~l~~~~~-d  461 (513)
                                   |++++|+|++.+|++++. +.|++||+++.....  ..+..|..++.  +++|+|++++|++++. |
T Consensus       217 -------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          217 -------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             -------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             -------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence                         569999999999999994 599999999874331  22223444444  5999999999999888 9


Q ss_pred             CeEEEec---CCCCCccccCCccccccCCeeEEEEeC---CCCEEEEEc-CCcEEE
Q 010287          462 GVVRRVK---GADNSALDANGNAFDFSMKLLHLAWHP---SENSIACAA-SNSLYM  510 (513)
Q Consensus       462 ~~i~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~sp---~~~~la~~~-~~~~~i  510 (513)
                      +.+++..   ..+.+         . ..++..++|+|   +.+.|++++ ++.+.+
T Consensus       283 ~~i~v~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          283 NSLTIYKFDKKTKNW---------T-KDEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             TEEEEEEECTTTCSE---------E-EEEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             CcEEEEEEcccccce---------E-ecCceeEecCccccccceeEEEecCCceEE
Confidence            9999921   11111         1 14566777887   777777555 444444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.1e-26  Score=216.31  Aligned_cols=227  Identities=9%  Similarity=0.056  Sum_probs=159.5

Q ss_pred             eEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +..+++.++++.++. + .|++|++||..+++....        + .+...|.++.++++.   ++.+ .|+.|++||+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------~-~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~  127 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------I-KVDAPVKDLFLSREF---IVVS-YGDVISVFKFG  127 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE--------E-ECSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE--------E-ECCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence            566778888887754 4 689999999987765432        2 256689999999864   3333 48899999998


Q ss_pred             Cc-ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE--EeC-CeEEEEEccCCCC---------------
Q 010287          313 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKLWDINMDSG---------------  373 (513)
Q Consensus       313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~~-~~v~iwd~~~~~~---------------  373 (513)
                      ++ +..    ..+..               +...+++++  .+++.  |+. |.|++||+.. +.               
T Consensus       128 ~~~~~~----~~~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~  185 (355)
T 3vu4_A          128 NPWKRI----TDDIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL  185 (355)
T ss_dssp             TTCCBS----SCCEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred             CCceee----EEecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence            86 432    22221               234456666  56665  344 9999999986 33               


Q ss_pred             C-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc-EEEEecCCCCccceeec-C-CCCceeEEEEc
Q 010287          374 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT  449 (513)
Q Consensus       374 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~~  449 (513)
                      + +..+.+|...               |++++|+|++++|++|+.|++ |++||+.++. ....+. + |..+|.+++|+
T Consensus       186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEEC
T ss_pred             cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEEC
Confidence            2 5667777655               569999999999999999998 9999999884 446666 5 99999999999


Q ss_pred             CCCCceeeecCCCeEEEecCCCCC--c-cccCC----cc-------------ccccCCeeEEEEeCCCCEEEEEc-CCcE
Q 010287          450 PSRPSRPLGSLSGVVRRVKGADNS--A-LDANG----NA-------------FDFSMKLLHLAWHPSENSIACAA-SNSL  508 (513)
Q Consensus       450 ~~~~~l~~~~~d~~i~~~~~~~~~--~-~~~~~----~~-------------~~~~~~i~~~~~sp~~~~la~~~-~~~~  508 (513)
                      |++++|++++.|+.|++.+.....  . ..+..    ..             .........++|+||+++|++++ ++.+
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence            999999999999999992111110  0 00000    00             01122347799999999999887 5555


Q ss_pred             EEEe
Q 010287          509 YMYY  512 (513)
Q Consensus       509 ~i~~  512 (513)
                      .+|.
T Consensus       330 ~~~~  333 (355)
T 3vu4_A          330 ETFK  333 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=6.1e-27  Score=224.96  Aligned_cols=280  Identities=9%  Similarity=0.051  Sum_probs=209.1

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .....+.+++|+|++.++++++.++.|++||+.+++..                  .......+.+|.            
T Consensus       120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~------------  169 (433)
T 3bws_A          120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL------------  169 (433)
T ss_dssp             ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC------------
T ss_pred             cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC------------
Confidence            34456779999998888899999999999998766531                  000011345666            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|.+++|.  +++.++++++.|+.|++||+++++....                                         
T Consensus       170 ~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~-----------------------------------------  206 (433)
T 3bws_A          170 GFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKAT-----------------------------------------  206 (433)
T ss_dssp             CEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred             CceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEE-----------------------------------------
Confidence            789999994  4777999999999999999987654332                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         +..|...+.+++|+|+++.+++ + .++.|++||+++++....  
T Consensus       207 -----------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--  249 (433)
T 3bws_A          207 -----------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--  249 (433)
T ss_dssp             -----------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--
T ss_pred             -----------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--
Confidence                                               1245567899999999998854 5 599999999986654322  


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEe--------CCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                            +.. ...+.+++|+|++ +.+++++        .|+.|++||+++++..    ..+             .|...
T Consensus       250 ------~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~-------------~~~~~  304 (433)
T 3bws_A          250 ------TDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTI-------------GPPGN  304 (433)
T ss_dssp             ------CCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEE-------------EEEEC
T ss_pred             ------ecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eec-------------cCCCC
Confidence                  222 3458999999998 7777777        5889999999887642    221             12246


Q ss_pred             EEEEEEeecCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---
Q 010287          343 ISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---  417 (513)
Q Consensus       343 v~~i~~sp~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---  417 (513)
                      +.+++|+|+++.++. +.. +.|++||+.. ++.+..+.....                +..++|+|++++|++++.   
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~  367 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK----------------PNTIALSPDGKYLYVSCRGPN  367 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEECSSS----------------EEEEEECTTSSEEEEEECCCC
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEecCCCC----------------CCeEEEcCCCCEEEEEecCCC
Confidence            889999999986654 444 9999999985 666655542221                348999999999888776   


Q ss_pred             ------------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec-CCCeEEE
Q 010287          418 ------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR  466 (513)
Q Consensus       418 ------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~  466 (513)
                                  ||.|++||+.++ +....+.. ...+..++|+|++++|++++ .|+.|++
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             ccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence                        579999999877 34445554 45688999999999998776 4999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.1e-26  Score=203.87  Aligned_cols=194  Identities=11%  Similarity=0.028  Sum_probs=140.6

Q ss_pred             cccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC---CCCeEEEEEeCC
Q 010287          230 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSK  303 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d  303 (513)
                      +|...|.++   ++++.+.++   .|+.|++|++....+...       .+..|...++.++|+|   ++ .+|++++.|
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D  202 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIM  202 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence            344445554   567777775   399999999965443332       4467888888888888   66 899999999


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE------------EEeC-CeEEEEEccC
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRDY-MTLKLWDINM  370 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~------------~~~~-~~v~iwd~~~  370 (513)
                      ++|++||+++++.    ++++.++..         +...+.+++|+|+|.+++            +|+. ++|++||..+
T Consensus       203 ~TIkIWDl~TGk~----l~tL~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          203 NNIVIWNLKTGQL----LKKMHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             SEEEEEETTTCCE----EEEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CcEEEEECCCCcE----EEEEcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            9999999999886    455543211         124688889999999874            4554 8999999986


Q ss_pred             CCCCeeeee-----cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee-
Q 010287          371 DSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-  444 (513)
Q Consensus       371 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-  444 (513)
                       ++.+..+.     +|...                 .+..+.++.++++++.|++|+|||+.++ +...++++|...+. 
T Consensus       270 -gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs  330 (356)
T 2w18_A          270 -TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWS  330 (356)
T ss_dssp             -TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCC
T ss_pred             -CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEE
Confidence             66655442     22211                 1223334788999999999999999988 55578888887655 


Q ss_pred             EEEEcCCCCceeeecCCCeEEE
Q 010287          445 RQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       445 ~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++|+|++++|++|+.|++|++
T Consensus       331 ~vafSPDG~~LaSGS~D~TIkl  352 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFV  352 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEE
Confidence            5899999999999999999999

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.6e-25  Score=212.07  Aligned_cols=259  Identities=8%  Similarity=0.098  Sum_probs=194.2

Q ss_pred             CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCc
Q 010287           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (513)
Q Consensus        48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~  127 (513)
                      .++++++.|+.|++||+.+++.                       ...+..|             ..+.+++|+|  ++.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~-------------~~~~~~~~s~--dg~   44 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVISP--DGT   44 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEECT--TSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecC-------------CCcceEEECC--CCC
Confidence            4688899999999999876653                       2334444             3489999955  776


Q ss_pred             eE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287          128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (513)
Q Consensus       128 ~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (513)
                      ++ ++++.|+.|++||+.+++......                                                     
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~-----------------------------------------------------   71 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNNVIATVP-----------------------------------------------------   71 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred             EEEEECCCCCeEEEEECCCCeEEEEEE-----------------------------------------------------
Confidence            66 566789999999998887544311                                                     


Q ss_pred             eeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCe
Q 010287          207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  284 (513)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  284 (513)
                                             .+ ..+.+++|+|++++|+.+  .++.|++||+.+++....        +. +...+
T Consensus        72 -----------------------~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~--------~~-~~~~~  118 (391)
T 1l0q_A           72 -----------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------VK-TGKSP  118 (391)
T ss_dssp             -----------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CSSSE
T ss_pred             -----------------------CC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE--------Ee-CCCCc
Confidence                                   11 258999999999988654  579999999997654322        22 34568


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE-EEeC-Ce
Q 010287          285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY-MT  362 (513)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~-~~~~-~~  362 (513)
                      .+++|+|++..++++++.++.|++||+++++.    ...+..+             ..+.+++|+|++++++ ++.. +.
T Consensus       119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~  181 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMS  181 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECC-------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEecC-------------CCcceEEECCCCCEEEEEeCCCCE
Confidence            99999999944457888899999999988765    2333222             3578999999999885 5554 99


Q ss_pred             EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe---CCCcEEEEecCCCCccceeecCC
Q 010287          363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                      |++||++. ++....+..+..                +..++|+|++++|++++   .++.|++||+.++ +....+..+
T Consensus       182 v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~  243 (391)
T 1l0q_A          182 ISVIDTVT-NSVIDTVKVEAA----------------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG  243 (391)
T ss_dssp             EEEEETTT-TEEEEEEECSSE----------------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC
T ss_pred             EEEEECCC-CeEEEEEecCCC----------------ccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecC
Confidence            99999986 655555543221                34899999999999887   6899999999977 444566665


Q ss_pred             CCceeEEEEcCCCCce-eeecCCCeEEE
Q 010287          440 KNPMRRQVQTPSRPSR-PLGSLSGVVRR  466 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l-~~~~~d~~i~~  466 (513)
                      .. +..++++|+++++ ++++.|+.|++
T Consensus       244 ~~-~~~~~~s~dg~~l~~s~~~d~~v~v  270 (391)
T 1l0q_A          244 PD-PAGIAVTPDGKKVYVALSFXNTVSV  270 (391)
T ss_dssp             SS-EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CC-ccEEEEccCCCEEEEEcCCCCEEEE
Confidence            54 6789999999977 67789999999

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.3e-26  Score=220.12  Aligned_cols=219  Identities=14%  Similarity=0.115  Sum_probs=158.7

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cC---CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCC
Q 010287          229 HAHDYHINSISNNSDGETFISA-DD---LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK  303 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d  303 (513)
                      .+|...+.+++|+|+++.|+++ .+   ..|++||+++++..         .+..|...+.+++|+|++ +.|+ +++.+
T Consensus       175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~  244 (415)
T 2hqs_A          175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT  244 (415)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred             eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence            4566789999999999999987 45   49999999876543         335567789999999999 6555 67666


Q ss_pred             Cc--EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeee
Q 010287          304 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT  377 (513)
Q Consensus       304 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~  377 (513)
                      +.  |.+||+.+++.     ..            +..|...+.+++|+|||++|+.+++  +  .|++||+.. ++ ...
T Consensus       245 g~~~i~~~d~~~~~~-----~~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~  305 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI-----RQ------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR  305 (415)
T ss_dssp             SSCEEEEEETTTCCE-----EE------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred             CCceEEEEECCCCCE-----Ee------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence            65  99999987653     11            2334467999999999998887653  4  677788874 43 333


Q ss_pred             eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287          378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS  454 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  454 (513)
                      +..+...               +..++|+|||++|++++.+   ..|++||+.++..  ..+..+. .+..+.|+|+++.
T Consensus       306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~  367 (415)
T 2hqs_A          306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM  367 (415)
T ss_dssp             CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred             EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence            3333322               3479999999999987754   5899999997743  3444554 7889999999999


Q ss_pred             eeeecCCC---eEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          455 RPLGSLSG---VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       455 l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                      |++++.++   .+.+.....    ........|.+.|.+++|+|...
T Consensus       368 l~~~s~~~~~~~l~~~d~~g----~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          368 VIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEETTEEEEEEEETTS----CCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEEEcCCCccEEEEEECCC----CcEEEeeCCCCCCcCCccccccc
Confidence            99988776   566622111    11123335788999999999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=2.1e-25  Score=211.19  Aligned_cols=269  Identities=12%  Similarity=0.136  Sum_probs=193.1

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEE-EeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (513)
                      .....|++..  ++.  ...+.+...+.+++|+|+|++| ++++.|+.|++||+.+++.                     
T Consensus        12 ~~v~v~d~~~--~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------   66 (391)
T 1l0q_A           12 DNISVIDVTS--NKV--TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------   66 (391)
T ss_dssp             TEEEEEETTT--TEE--EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------
T ss_pred             CEEEEEECCC--CeE--EEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------
Confidence            3455676654  111  1223344569999999999976 6777999999999876553                     


Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                        ...+..+             ..+.+++|+|  ++.+++++ +.|+.|++||+.+++......                
T Consensus        67 --~~~~~~~-------------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----------------  113 (391)
T 1l0q_A           67 --IATVPAG-------------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVK----------------  113 (391)
T ss_dssp             --EEEEECS-------------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------
T ss_pred             --EEEEECC-------------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEe----------------
Confidence              1222222             4599999955  77777655 567999999999876543211                


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEE-E
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-I  248 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~  248 (513)
                                                                                   +...+.+++|+|+++.+ +
T Consensus       114 -------------------------------------------------------------~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A          114 -------------------------------------------------------------TGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             -------------------------------------------------------------CSSSEEEEEECTTSSEEEE
T ss_pred             -------------------------------------------------------------CCCCcceEEECCCCCEEEE
Confidence                                                                         12347899999999987 5


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      ++ .++.|++||+.+++....        +.. ...+.+++|+|++..++++++.++.|++||+++++.    ...+.  
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~--------~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~--  197 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINT--------VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVK--  197 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--------EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE--
T ss_pred             EeCCCCEEEEEECCCCcEEEE--------Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEEEe--
Confidence            66 699999999987654322        222 345799999999944457888899999999988764    22222  


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEe----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                                 +...+.+++|+|++++|++++    ++.|++||+.. ++.+..+..+..                +..+
T Consensus       198 -----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~  249 (391)
T 1l0q_A          198 -----------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGPD----------------PAGI  249 (391)
T ss_dssp             -----------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCSS----------------EEEE
T ss_pred             -----------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCCC----------------ccEE
Confidence                       224689999999999888764    49999999986 666666665543                2379


Q ss_pred             EEeCCCCEE-EEEeCCCcEEEEecCCCCccceeecCCCCce
Q 010287          404 CLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEASKNPM  443 (513)
Q Consensus       404 ~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v  443 (513)
                      +|+|++++| ++++.|+.|++||+.++ .....+..+..+.
T Consensus       250 ~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~  289 (391)
T 1l0q_A          250 AVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPY  289 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEE
T ss_pred             EEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCC
Confidence            999999987 56788999999999987 4445666665543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.5e-25  Score=217.50  Aligned_cols=327  Identities=10%  Similarity=0.064  Sum_probs=228.8

Q ss_pred             EEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEe
Q 010287           42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC  121 (513)
Q Consensus        42 ~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~  121 (513)
                      +|+|++.++++++.+++|.+||..+++.                       ...+..+             ..+..++|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g-------------~~~~~v~~s  187 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTG-------------YAVHISRMS  187 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECS-------------TTEEEEEEC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecC-------------cccceEEEC
Confidence            3899999999999999999999876653                       1333322             227889995


Q ss_pred             ecCCCceEEEeecCCeEEEEEc--cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCc
Q 010287          122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF  199 (513)
Q Consensus       122 ~~~~~~~l~s~s~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  199 (513)
                        ++++++++++.|++|++||+  .++++.....                                              
T Consensus       188 --pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----------------------------------------------  219 (543)
T 1nir_A          188 --ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----------------------------------------------  219 (543)
T ss_dssp             --TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------------------------------------------
T ss_pred             --CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----------------------------------------------
Confidence              48889999999999999999  6655432211                                              


Q ss_pred             CCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc----CCCEEEEE--cCCeEEEEEcCCCcceeeecccC
Q 010287          200 PPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       200 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                     +...+..++|+|    ++++++++  .+++|.+||..+.+....+ ...
T Consensus       220 -------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~~~  267 (543)
T 1nir_A          220 -------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STR  267 (543)
T ss_dssp             -------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECC
T ss_pred             -------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-ccc
Confidence                                           123378899999    99999988  3899999999876544322 111


Q ss_pred             cccc---cccc-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          274 PANM---EDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       274 ~~~~---~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      ....   ..|. ..+..+.++|+++.++++...++.|.+||+.+.....  ...+.             +...+.++.|+
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~~s  332 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGGWD  332 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEEEC
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCceEC
Confidence            0000   1133 3789999999887888888999999999998765321  11221             12457789999


Q ss_pred             ecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE-EeCC-CCEEEEEe-CCCcEEEE
Q 010287          350 RNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFRVF  424 (513)
Q Consensus       350 p~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~vw  424 (513)
                      |+|+++++++ . ++|.+||+.+ ++.+..+........        .     .... ++|+ +.+++++. .|++|.+|
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g-----~g~~~~~p~~g~~~~s~~~~d~~V~v~  398 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------G-----RGANFVHPKYGPVWSTSHLGDGSISLI  398 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------T-----TCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------C-----CCcccCCCCCccEEEeccCCCceEEEE
Confidence            9999877654 3 8999999996 777777664211100        0     0222 4677 66667765 68999999


Q ss_pred             ecCCC------CccceeecCCCCceeEEEEcCCCCceeeec-------CCCeEEEecCCCCCcc-ccC-C----cccccc
Q 010287          425 GCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-DAN-G----NAFDFS  485 (513)
Q Consensus       425 d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~~~~~~~~~-~~~-~----~~~~~~  485 (513)
                      |+.+.      .+.+.+++.|...+..+.++|++++|++++       .++.|.+.+....... +.. .    ...++.
T Consensus       399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~  478 (543)
T 1nir_A          399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  478 (543)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence            99872      245588888888888999999999999987       2678998333222210 110 0    012457


Q ss_pred             CCeeEEEEeCCCCEEEEE--c----CCcEEEEeC
Q 010287          486 MKLLHLAWHPSENSIACA--A----SNSLYMYYA  513 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~--~----~~~~~i~~~  513 (513)
                      ..+.+++|+|+|+.|.++  +    ++.|.||..
T Consensus       479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            889999999999998865  2    588888863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=1.1e-25  Score=238.87  Aligned_cols=388  Identities=9%  Similarity=0.000  Sum_probs=243.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCC------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF  103 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  103 (513)
                      ....|...|.+++|||||++||+++.+      ..|++|++.+++.                        ..+..|.   
T Consensus        47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~---   99 (1045)
T 1k32_A           47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS---   99 (1045)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC---
T ss_pred             EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC---
Confidence            455789999999999999999988643      3688999766542                        3455565   


Q ss_pred             cccccccccccc-------eeEEEeecCCCceEEEeecC------CeEEEEEccCceeeeeeccccCCCc----ccCCCC
Q 010287          104 DYLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----AAGNGP  166 (513)
Q Consensus       104 ~~~~~~~~~~~i-------~~i~~~~~~~~~~l~s~s~d------~~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~~  166 (513)
                               ..+       ..++|+|  |++.+++++.+      ..|.+|++.++....+.........    .+..+.
T Consensus       100 ---------~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~  168 (1045)
T 1k32_A          100 ---------GKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR  168 (1045)
T ss_dssp             ---------EEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred             ---------CcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence                     555       8999955  77766776644      4588888887765443221110000    000000


Q ss_pred             cc-------cC-cccccCceeccCCCccccccC--------CCCC-CCCcCCCCCCceeceeeccCCcccccceeeEeec
Q 010287          167 IF-------GS-HVSAIPKSYMANGGCGERNFG--------CASN-DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAH  229 (513)
Q Consensus       167 ~~-------~~-~~~~~~~~~~~~g~~~~~~~~--------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  229 (513)
                      ..       .. ......+.+.+++.....+..        .+.. .+.++...++..++|.+......     .+ .+.
T Consensus       169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~-----~~-~l~  242 (1045)
T 1k32_A          169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD-----LR-KHT  242 (1045)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS-----CE-ECC
T ss_pred             cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCc-----ce-Eec
Confidence            00       00 000000111111100000000        0001 22344456677888877532210     11 123


Q ss_pred             cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccC---ccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287          230 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK---PANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~  305 (513)
                      .|. .+...+|+|+|+.|+.+.++.|++|++.. .....+....   ......|...+.+++|+ |++ +.+++++ ++.
T Consensus       243 ~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~  318 (1045)
T 1k32_A          243 SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQ  318 (1045)
T ss_dssp             CCC-SSCEEEEEESSSCEEEEETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTE
T ss_pred             CCC-CcceeeEcCCCCEEEEEeCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCE
Confidence            333 36678999999999998899999999843 3222211000   00111245578999999 999 7777776 889


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccc-cEEEEEEeecCCEEEEEeC-CeEE-EEEccCCCCCeeeeeccc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDINMDSGPVATFQVHE  382 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~l~~~~~-~~v~-iwd~~~~~~~~~~~~~~~  382 (513)
                      |.+|++..+...     .+            ..|.. .+..++|+ ||+.|+.+++ ..+. +||+.. ++ ...+..+.
T Consensus       319 i~~~~~~~~~~~-----~~------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~  378 (1045)
T 1k32_A          319 AFIQDVSGTYVL-----KV------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFEENL  378 (1045)
T ss_dssp             EEEECTTSSBEE-----EC------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECCCCC
T ss_pred             EEEEcCCCCceE-----Ec------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEecCCc
Confidence            999998766531     11            22234 68999999 9999998776 7788 889874 33 33333333


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                      ..               +..++|+|||++|++++.++.|++||+.++ .....+..|...+..++|+|+|++|++++.++
T Consensus       379 ~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          379 GN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             CS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             cc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCc
Confidence            22               448999999999999999999999999987 34455667888899999999999999887654


Q ss_pred             ----------eEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287          463 ----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS  505 (513)
Q Consensus       463 ----------~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  505 (513)
                                .|++   ++..... ......|...+..++|+|||++|++++.
T Consensus       443 ~~~~~~~~~~~i~l---~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          443 HGETDGYVMQAIHV---YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             SSTTCSCCEEEEEE---EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             cccccCCCCCeEEE---EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence                      7777   2222111 1223346777899999999999997764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.4e-25  Score=227.61  Aligned_cols=326  Identities=7%  Similarity=0.042  Sum_probs=215.2

Q ss_pred             cccEEEEEEcCCCCEEEeecC-CC-----cEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc-----
Q 010287           35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF-----  103 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-----  103 (513)
                      ...|++++|||||++||+++. |+     .|++||+.+++...    .                 .....+.+..     
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~----~-----------------~~~~~~~~~~~~~~~   94 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL----L-----------------VDSKVVLPGTETLSD   94 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE----E-----------------ECGGGTC--------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE----c-----------------cchhhcccccccccc
Confidence            567999999999999999998 88     89999987765310    0                 0000000000     


Q ss_pred             --ccccc---ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCc---eeeeeeccccCCCcccCCCCcccCccccc
Q 010287          104 --DYLKS---LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (513)
Q Consensus       104 --~~~~~---~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (513)
                        ...+.   +.....|.+++|+|  |+++|++++. +.|++||+.++   ....                         
T Consensus        95 ~~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------  146 (741)
T 2ecf_A           95 EEKARRERQRIAAMTGIVDYQWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------  146 (741)
T ss_dssp             ------------CCEESCCCEECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------
T ss_pred             hhhhhhhhhhhccccCcceeEECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------
Confidence              00000   00003488999954  8888888876 99999999876   3211                         


Q ss_pred             CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeE
Q 010287          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI  255 (513)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i  255 (513)
                                                                          +..|...+.+++|+|||++|+.+.++.|
T Consensus       147 ----------------------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i  174 (741)
T 2ecf_A          147 ----------------------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNL  174 (741)
T ss_dssp             ----------------------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEE
T ss_pred             ----------------------------------------------------cccCCcccccccCCCCCCEEEEEeCCcE
Confidence                                                                1244456889999999999999877899


Q ss_pred             EEEEcCCCcceeeecccCccccccccC----------------CeEEEEEeCCCCeEEEEEeCCC---------------
Q 010287          256 NLWNLEISNQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG---------------  304 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg---------------  304 (513)
                      ++||+.+++.. .+.       ..+..                .+..+.|+||+ +.|++++.|+               
T Consensus       175 ~~~d~~~g~~~-~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~  245 (741)
T 2ecf_A          175 WVIDLASGRQM-QLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADR  245 (741)
T ss_dssp             EEEETTTTEEE-ECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSC
T ss_pred             EEEecCCCCEE-Eec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCc
Confidence            99999865432 211       11111                24789999999 7788877665               


Q ss_pred             ------------------cEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe------
Q 010287          305 ------------------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------  359 (513)
Q Consensus       305 ------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~------  359 (513)
                                        .|.+||+.+ ++..    .....          ..|...+..++| |||++|+.+.      
T Consensus       246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~----~~~~~----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~  310 (741)
T 2ecf_A          246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ----WIDLG----------KEQDIYLARVNW-RDPQHLSFQRQSRDQK  310 (741)
T ss_dssp             EEEEEEECCBTTSCCCEEEEEEECSSTTCCCE----EECCC----------SCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred             ccceEeecCCCCCCCCeeEEEEEECCCCCceE----EecCC----------CCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence                              788888876 6531    11100          124467999999 9999998642      


Q ss_pred             CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287          360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                      +..|++||+.+ ++....+..+....           +..+..++|+|||+++++++.||.++||.+..... ...+..+
T Consensus       311 ~~~i~~~d~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~  377 (741)
T 2ecf_A          311 KLDLVEVTLAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG  377 (741)
T ss_dssp             EEEEEEEETTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS
T ss_pred             eEEEEEEECCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec
Confidence            26899999986 66555554433210           00123789999999989999999888887653333 5667777


Q ss_pred             CCceeEE-EEcCCCCcee-eecCCC--eEEE--ecC-CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          440 KNPMRRQ-VQTPSRPSRP-LGSLSG--VVRR--VKG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       440 ~~~v~~~-~~~~~~~~l~-~~~~d~--~i~~--~~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ...+..+ .|+|+++.|+ +++.++  .+++  ... ...      ...+.....+..++||||+++|+...
T Consensus       378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~------~~~l~~~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ------PQRLSKAPGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC------CEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred             ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC------eeecccCCCceEEEECCCCCEEEEEe
Confidence            7778777 5999999775 445554  6666  111 110      11122256688999999999988553

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.5e-24  Score=192.18  Aligned_cols=215  Identities=9%  Similarity=0.087  Sum_probs=139.9

Q ss_pred             ccCCeEEEEeccC----CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCC
Q 010287          231 HDYHINSISNNSD----GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKG  304 (513)
Q Consensus       231 h~~~v~~~~~~~~----~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg  304 (513)
                      +...|++++++|+    ++.+++++ ..+.+|++.++                               +++.+++  .|+
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~~g-------------------------------~lv~ss~~g~d~  157 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLTKR-------------------------------RLVSSSGTLSDQ  157 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEE-EEEEEEEETTT-------------------------------EEEEEESSSTTC
T ss_pred             cccceEEEEECCCccccccEEEeCC-CeEEEEecCCC-------------------------------cEEEecccCCCC
Confidence            3456889999998    88888764 23667765422                               3333322  356


Q ss_pred             cEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEee---cCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287          305 SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       305 ~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~  379 (513)
                      .|++|++.. ++.    ...            +.+|...+..++|+|   ++.+|+++++ ++|+|||+++ ++.++++.
T Consensus       158 ~V~~~~~s~dG~~----~~s------------~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~  220 (356)
T 2w18_A          158 QVEVMTFAEDGGG----KEN------------QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMH  220 (356)
T ss_dssp             EEEEEEECTTSCE----EEE------------EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred             cEEEEEECCCCce----eee------------eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEc
Confidence            666666532 322    111            233446788899998   7799999875 9999999997 88999987


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEE------------EEEeCCCcEEEEecCCCCccceee-----cCCCCc
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV------------ATGSYSNLFRVFGCSEGSAESTTL-----EASKNP  442 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~  442 (513)
                      +|.....            .+..++|+|+|+++            ++|+.|++|++||..++... ..+     .+|...
T Consensus       221 g~~~~v~------------~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-~v~~~~~p~Gh~~~  287 (356)
T 2w18_A          221 IDDSYQA------------SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-GVMLYCLPPGQAGR  287 (356)
T ss_dssp             CCC---C------------CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE-EEEEECCCTTCCCC
T ss_pred             CCCccee------------eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-EEEEeeccCCCcce
Confidence            6543221            13477899999876            56788999999999987433 222     355544


Q ss_pred             eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee-EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL-HLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +....+  ++.++|+++.|++|+|   |+....+......+|...+. .++|||||++||+|+ |+.++||.
T Consensus       288 ~lsg~~--sg~~lASgS~DgTIkI---WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          288 FLEGDV--KDHCAAAILTSGTIAI---WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEE---EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             eEcccc--CCCEEEEEcCCCcEEE---EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            433333  3778999999999999   65553333334445766554 689999999999998 77899996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2e-24  Score=221.42  Aligned_cols=336  Identities=10%  Similarity=0.036  Sum_probs=207.7

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..+.+++|+|||+++++ +.||+|++||+.+++..                       ..+.+|...         ...|
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v   63 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA   63 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence            34678999999998877 68999999999877641                       223334300         0148


Q ss_pred             eeEEEeecCCCceEEEeecC---------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      .+++|+|  |+++|++++.+         +.+.+||+.+++...+..                                 
T Consensus        64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------------------------------  108 (723)
T 1xfd_A           64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---------------------------------  108 (723)
T ss_dssp             SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred             ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence            9999955  88899998764         778899998876422110                                 


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcce
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS  266 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~  266 (513)
                                                               ..+|...+..++|+|||+.|+.+.++.|++||+.+++..
T Consensus       109 -----------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~  147 (723)
T 1xfd_A          109 -----------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI  147 (723)
T ss_dssp             -----------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred             -----------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence                                                     013334477889999999999997789999999875532


Q ss_pred             eeecccCccc--cccc---------cCCeEEEEEeCCCCeEEEEEeCCC-------------------------------
Q 010287          267 FNIVDVKPAN--MEDL---------TEVITSAEFHPTHCNMLAYSSSKG-------------------------------  304 (513)
Q Consensus       267 ~~~~~~~~~~--~~~~---------~~~i~~~~~~~~~~~~l~~~~~dg-------------------------------  304 (513)
                       .+.......  +.++         ...+.+++|+||+ +.|++++.|+                               
T Consensus       148 -~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          148 -RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             -EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             -EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence             221000000  0011         1134789999999 7888777543                               


Q ss_pred             ---cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccCCCCCee
Q 010287          305 ---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGPVA  376 (513)
Q Consensus       305 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~~~~~~~  376 (513)
                         .|++||+.+++.    ...+..+..      ...+...+..++|+|||++|++..    . ..|++||+.+ ++...
T Consensus       226 ~~~~l~~~d~~~~~~----~~~l~~~~~------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~  294 (723)
T 1xfd_A          226 PSISLHVIGLNGPTH----DLEMMPPDD------PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTK  294 (723)
T ss_dssp             CEEEEEEEESSSSCC----CEECCCCCC------GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEE
T ss_pred             CeeEEEEEECCCCce----eEEeeCCcc------CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceE
Confidence               677888776653    122221110      122346789999999999887642    2 6799999986 65554


Q ss_pred             eeeccc-ccccccccccccCCccceeeEEEeCCCCEEEE--EeCCC------cEEEEecCCCCcc--ceeecCCCCceeE
Q 010287          377 TFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFGCSEGSAE--STTLEASKNPMRR  445 (513)
Q Consensus       377 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg------~i~vwd~~~~~~~--~~~~~~~~~~v~~  445 (513)
                      .+..+. ......           ...++|+|||+.|+.  +..++      .|++||+..+...  ...+......+..
T Consensus       295 ~~~~~~~~~~~~~-----------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  363 (723)
T 1xfd_A          295 KHEDESEAWLHRQ-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (723)
T ss_dssp             EEEEECSSCCCCC-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EEEeccCCEEecc-----------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence            443321 111000           016789999997775  44666      5777773233230  2334333334444


Q ss_pred             -EEEcCCCCceeeecCC---CeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          446 -QVQTPSRPSRPLGSLS---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       446 -~~~~~~~~~l~~~~~d---~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                       +.|+|+++.|+..+.+   +.+++  .................+...+..++|+||+++|+...
T Consensus       364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence             6899999999766544   66666  21111000001111111466789999999999988653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=6e-24  Score=225.61  Aligned_cols=383  Identities=10%  Similarity=0.026  Sum_probs=245.4

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      +...+.+.+|||  ++||.++. +.|++|++.+++.                        ..+.+|.            .
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~------------------------~~lt~~~------------~   53 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST------------------------RKIVSNL------------G   53 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE------------------------EEEECSS------------S
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE------------------------EEeeeCC------------C
Confidence            457889999996  58888775 6899999876553                        3455677            7


Q ss_pred             cceeEEEeecCCCceEEEeecC------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          114 KINKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      .+.+++|+|  ||+.|+.++.+      ..|++|++.+++...+..   +....  .+..    .....++|+|||+.+.
T Consensus        54 ~v~~~~~SP--DG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~---~~~~~--~~~~----~~~~~~~~SpDg~ll~  122 (1045)
T 1k32_A           54 VINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY---FSGKS--TGRR----MFTDVAGFDPDGNLII  122 (1045)
T ss_dssp             EEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC---CCEEE--ETTE----ECSEEEEECTTCCEEE
T ss_pred             cccCeEECC--CCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc---CCCcc--cccc----cccccccCCCCCEEEE
Confidence            899999955  88899988654      479999998887443321   11000  0000    0113678999998331


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCccc-------------------------------------------cccee
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNL-------------------------------------------VAGCR  224 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------------------------~~~~~  224 (513)
                      ..  ....+    ......+..|++.......                                           .....
T Consensus       123 ~~--~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~  196 (1045)
T 1k32_A          123 ST--DAMQP----FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF  196 (1045)
T ss_dssp             EE--CTTSS----STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE
T ss_pred             EE--CCcCC----CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCe
Confidence            10  00000    0011234444432221100                                           00011


Q ss_pred             eEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287          225 RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK  303 (513)
Q Consensus       225 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  303 (513)
                       ..+.+|...+.++.|+++ .+++++ .++.+.+|.+........       .+..|. .+..++|+|++ +.++++ .+
T Consensus       197 -~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~-------~l~~~~-~~~~~~~SpDG-~~la~~-~~  264 (1045)
T 1k32_A          197 -KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR-------KHTSFT-DYYPRHLNTDG-RRILFS-KG  264 (1045)
T ss_dssp             -EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE-------ECCCCC-SSCEEEEEESS-SCEEEE-ET
T ss_pred             -EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce-------EecCCC-CcceeeEcCCC-CEEEEE-eC
Confidence             123678889999999988 555566 688899998764332221       223343 35677999999 777776 58


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe-ecCCEEEEEeCCeEEEEEccCCCCCeeeeeccc
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-RNGRHILSRDYMTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      +.|.+||+.....     ..+...... .......|...+.+++|+ |||+.|+++.++.|.+|++.. +. ...+..+.
T Consensus       265 ~~i~~~d~~~~~l-----~~l~~~~~~-~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-~~-~~~~~~~~  336 (1045)
T 1k32_A          265 GSIYIFNPDTEKI-----EKIEIGDLE-SPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-TY-VLKVPEPL  336 (1045)
T ss_dssp             TEEEEECTTTCCE-----EECCCCCCC-BCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS-SB-EEECSCCS
T ss_pred             CEEEEecCCceEe-----eeeccCccc-ccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC-Cc-eEEccCCC
Confidence            9999999843322     222221100 111123355678999999 999999998889999999874 33 33343333


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE-EEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR-VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      ..              .+..++|+ ||+.|++++.++.+. +|++.++..  ..+..+...+..++|+|++++|++++.+
T Consensus       337 ~~--------------~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~  399 (1045)
T 1k32_A          337 RI--------------RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDR  399 (1045)
T ss_dssp             CE--------------EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred             cc--------------eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEEECCC
Confidence            20              13478999 999999998888898 999886632  3344777889999999999999999999


Q ss_pred             CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC-----------CcEEEEe
Q 010287          462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----------NSLYMYY  512 (513)
Q Consensus       462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-----------~~~~i~~  512 (513)
                      +.+++.   +....+.......|...+.+++|||||++||+++.           ..+++|.
T Consensus       400 ~~v~~~---d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          400 FEIMTV---DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             SEEEEE---ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             CeEEEE---ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            999982   22211111111247788999999999999997663           2688875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=7.8e-24  Score=200.97  Aligned_cols=262  Identities=12%  Similarity=0.127  Sum_probs=191.5

Q ss_pred             ccccccccEEEEEEcC--------------CCCEEEeecCC------CcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287           30 EEVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp--------------~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (513)
                      ...+|...+..+++++              .+..++.++.+      ++|++||+.+...                    
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------  171 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------  171 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--------------------
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--------------------
Confidence            3556777777777765              15667666654      7999999864332                    


Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCC---eEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                          ..+.+|.            ..|.+++|+|  +++.|++++.|+   .|++||+.+++....               
T Consensus       172 ----~~l~~~~------------~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------  218 (415)
T 2hqs_A          172 ----FVVHRSP------------QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQV---------------  218 (415)
T ss_dssp             ----EEEEEES------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEEE---------------
T ss_pred             ----EEEeCCC------------CcceeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCcEEEe---------------
Confidence                3345566            7899999955  888999998875   999999988764321               


Q ss_pred             cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  246 (513)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  246 (513)
                                                                                    ..|...+.+++|+|+|+.
T Consensus       219 --------------------------------------------------------------~~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          219 --------------------------------------------------------------ASFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             --------------------------------------------------------------ECCSSCEEEEEECTTSSE
T ss_pred             --------------------------------------------------------------ecCCCcccCEEEcCCCCE
Confidence                                                                          244456889999999998


Q ss_pred             EE-EE-cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CC--cEEEEEcCCcccccc
Q 010287          247 FI-SA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDT  319 (513)
Q Consensus       247 l~-s~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~  319 (513)
                      |+ ++ .+  ..|++||+.+++..         .+..|...+.+++|+|++ +.|++++. ++  .|.+||+.++..   
T Consensus       237 la~~~~~~g~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~---  303 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP---  303 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEE---------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC---
T ss_pred             EEEEEecCCCceEEEEECCCCCEE---------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE---
Confidence            88 44 34  45999999865432         345677889999999999 77777665 45  677778877653   


Q ss_pred             cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287          320 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND  395 (513)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (513)
                        ..+            ..+...+.+++|+|+|++|++++ +   ..|++||+.+ ++. ..+..+. .           
T Consensus       304 --~~l------------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~-----------  355 (415)
T 2hqs_A          304 --QRI------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L-----------  355 (415)
T ss_dssp             --EEC------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S-----------
T ss_pred             --EEE------------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C-----------
Confidence              111            11225688999999999998754 3   5899999985 443 3343332 1           


Q ss_pred             CccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287          396 SIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP  453 (513)
Q Consensus       396 ~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  453 (513)
                          +..++|+|||++|++++.++   .|++||+..+  ....+..|...|..++|+|...
T Consensus       356 ----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          356 ----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred             ----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence                34899999999999888776   7999998743  4567888999999999999743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.5e-22  Score=197.92  Aligned_cols=290  Identities=11%  Similarity=0.081  Sum_probs=202.6

Q ss_pred             EEEEEEcCCCCEEEeecCCCcEEEEEe--eCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        38 V~~v~~sp~g~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      +.+++|+|+|++|++++.|++|++||+  .+.+.                       ...+.. .            ..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~-g------------~~p  224 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKI-G------------IEA  224 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEEC-C------------SEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEec-C------------CCc
Confidence            899999999999999999999999998  44332                       122222 1            457


Q ss_pred             eeEEEeecC----CCceEEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       116 ~~i~~~~~~----~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      ..++|  ++    +++++++++ .+++|.+||..++++...........                      ++       
T Consensus       225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------------~~-------  273 (543)
T 1nir_A          225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------------DT-------  273 (543)
T ss_dssp             EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS----------------------SS-------
T ss_pred             ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc----------------------Cc-------
Confidence            89999  55    778888887 58999999998887665433211000                      00       


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCccee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEISNQSF  267 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~  267 (513)
                                                           ...|. ..+.++.+++++..++.+  .++.|.+||..+.+...
T Consensus       274 -------------------------------------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~  316 (543)
T 1nir_A          274 -------------------------------------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  316 (543)
T ss_dssp             -------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred             -------------------------------------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence                                                 00122 258899999987776665  69999999998655332


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                       +.     . ..+...+.++.|+|++..+++++..++.|.+||+.++++    ...+.....        .|.+....+ 
T Consensus       317 -~~-----~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l----~~~i~~g~~--------ph~g~g~~~-  376 (543)
T 1nir_A          317 -VT-----S-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL----SALVDVGKT--------PHPGRGANF-  376 (543)
T ss_dssp             -EE-----E-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE----EEEEECSSS--------BCCTTCEEE-
T ss_pred             -eE-----E-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE----EEeeccCCC--------CCCCCCccc-
Confidence             10     1 124566788999999933445556689999999999876    333332211        122222223 


Q ss_pred             Eeec-CCEEEEEe--CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--
Q 010287          348 FARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--  416 (513)
Q Consensus       348 ~sp~-~~~l~~~~--~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  416 (513)
                      ++|+ +.+++++.  +++|.+||+.+.      .+.++++..+...               +..++++|++++|++++  
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---------------~~~v~~~pdg~~l~v~~~~  441 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSHLYVDTTF  441 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCCEEEECCTT
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---------------ceEEEcCCCCCcEEEecCC
Confidence            4776 66677764  499999999852      4667777776543               23789999999999987  


Q ss_pred             -----CCCcEEEEecCCCCccceee--------cCCCCceeEEEEcCCCCceeee-----cCCCeEEE
Q 010287          417 -----YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLG-----SLSGVVRR  466 (513)
Q Consensus       417 -----~dg~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~~  466 (513)
                           .+++|.+||+.+++.....+        ..+...+..+.|+|+|+.++++     +.|+.|.+
T Consensus       442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v  509 (543)
T 1nir_A          442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  509 (543)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred             CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence                 26799999999886543443        3557789999999999998865     34788988

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.1e-22  Score=207.86  Aligned_cols=248  Identities=6%  Similarity=-0.000  Sum_probs=160.8

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCC-----CcceeeecccCcc-------ccccccCCeEEEEEeCCCCeEEEEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYS  300 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~  300 (513)
                      ..+.+++|+|||+.|+++.++.|++|++.+     ++.. .+......       ..+.+...+.++.|+||+ +.|+++
T Consensus       121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~  198 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFY  198 (706)
T ss_dssp             TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEE
T ss_pred             ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEE
Confidence            346678999999999998889999999986     4432 21100000       000111225899999999 888887


Q ss_pred             e---------------------------------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          301 S---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       301 ~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      +                                 .+..|.+||+.+++..    .....          ..|...+.+++
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~----------~~~~~~~~~~~  264 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTG----------EPKEKFLTNLS  264 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCC----------SCTTCEEEEEE
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccC----------CCCceeEeeEE
Confidence            7                                 3467999999876531    11110          12335789999


Q ss_pred             EeecCCEEEEEe-CC-----eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC--CCCEEEEEeCCC
Q 010287          348 FARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSN  419 (513)
Q Consensus       348 ~sp~~~~l~~~~-~~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg  419 (513)
                      |+|||+.|+++. ++     .|++||+.+ ++....+.......          .+..+..+.|+|  ||+++++++.|+
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCC
Confidence            999999888754 33     899999986 53333332211100          000013689999  999999999999


Q ss_pred             cEEEEecCCCCccceeecCCCCceeE-EEEcCCCCceeeecC-CC----eEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287          420 LFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAW  493 (513)
Q Consensus       420 ~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-d~----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  493 (513)
                      .++||.+.........+..+...+.. +.|+|+++.|+.++. ++    .|........     ....+.+...+.+++|
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~  408 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-----KTKDLTPESGMHRTQL  408 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-----CCEESCCSSSEEEEEE
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-----CceeccCCCceEEEEE
Confidence            99999876333444666677777776 799999998765544 43    3443221110     1122335677999999


Q ss_pred             eCCCCEEEEEc-C----CcEEEEe
Q 010287          494 HPSENSIACAA-S----NSLYMYY  512 (513)
Q Consensus       494 sp~~~~la~~~-~----~~~~i~~  512 (513)
                      |||+++|+.+. +    ..+++|+
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEE
Confidence            99999988653 2    2377875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.2e-21  Score=179.62  Aligned_cols=283  Identities=8%  Similarity=0.035  Sum_probs=196.1

Q ss_pred             cccccEEEEEEcCCCCEEEeecC-------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  105 (513)
                      .....+..++|+|+|++|++++.       ++.|.+||..+++..                       ..+.. .     
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~-~-----   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHN-D-----   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEE-S-----
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEec-C-----
Confidence            34567899999999998888774       567999998765531                       11111 1     


Q ss_pred             cccccccccceeEEEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          106 LKSLEIEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                             ..+..++|+|  ++++++++ ..++.|.+||..+++............                     +   
T Consensus        89 -------~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---------------------~---  135 (353)
T 3vgz_A           89 -------LKPFGATINN--TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR---------------------T---  135 (353)
T ss_dssp             -------SCCCSEEEET--TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC---------------------C---
T ss_pred             -------CCcceEEECC--CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc---------------------c---
Confidence                   4478889965  66655554 568999999999887655433211000                     0   


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcC
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLE  261 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~  261 (513)
                                                                 .......+.+++|+|+++.++++   .++.|.+||..
T Consensus       136 -------------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A          136 -------------------------------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             -------------------------------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred             -------------------------------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence                                                       00011226789999999987765   27899999998


Q ss_pred             CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      +++....        +..+...+.+++|+|++ +.+++++.++.|.+||+.+++..    ..+....        .++..
T Consensus       173 ~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~--------~~~~~  231 (353)
T 3vgz_A          173 NIKLKTA--------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD--------DGKEH  231 (353)
T ss_dssp             TTEEEEE--------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC--------SSSCC
T ss_pred             CCceEEE--------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC--------CCCCc
Confidence            7654332        23244557889999999 78888889999999999887652    2222211        11234


Q ss_pred             cEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CC
Q 010287          342 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS  418 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  418 (513)
                      .+..++|+|+++++++++ + +.|.+||+.+ ++.+..+......                 .++|+|+++++++++ .+
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-----------------~~~~s~dg~~l~v~~~~~  293 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPESL-----------------AVLFNPARNEAYVTHRQA  293 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSCC-----------------CEEEETTTTEEEEEETTT
T ss_pred             ccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCc-----------------eEEECCCCCEEEEEECCC
Confidence            688899999999877754 4 8999999986 7777666543321                 789999999766555 78


Q ss_pred             CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      +.|.+||+.++ +....+... ..+..++|+|++++|+.+..+
T Consensus       294 ~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          294 GKVSVIDAKSY-KVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TEEEEEETTTT-EEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             CeEEEEECCCC-eEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            99999999887 333444443 356789999999977665433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=6.4e-22  Score=179.40  Aligned_cols=233  Identities=12%  Similarity=0.090  Sum_probs=162.2

Q ss_pred             cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCC-CcceeeecccCccccccc-cCCeEEEEEeCCCCeEEEEEe--CCCc
Q 010287          230 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~--~dg~  305 (513)
                      .|...|.+++|+|++++|+++.++.|++||+.+ ++.. .       ....+ ...+.+++|+|++ +.|++++  .++.
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-~-------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~  109 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-K-------VDTGFATICNNDHGISPDG-ALYAISDKVEFGK  109 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-E-------CCCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred             cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-E-------eccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence            456679999999999999999889999999987 5432 2       12233 4678899999999 8888888  3455


Q ss_pred             EEEEEc--CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE-EEe-CCeEEEEEccCCCCCeeeeecc
Q 010287          306 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       306 i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~-~~~-~~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      ..+|.+  .++.     ...+...             ..+..++|+|++++|+ ++. ++.+++|++.........+..+
T Consensus       110 ~~l~~~~~~~~~-----~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A          110 SAIYLLPSTGGT-----PRLMTKN-------------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             CEEEEEETTCCC-----CEECCSS-------------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             ceEEEEECCCCc-----eEEeecC-------------CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            666655  3332     1112111             2488899999999887 444 5889999976534444444443


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      ...               +..++|+|++++|+.++ .++.+++|++.........+..+...+..+.|+|++++|++++.
T Consensus       172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            332               34899999999888666 58999999987433445667777788899999999999998877


Q ss_pred             C-----------CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287          461 S-----------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS  505 (513)
Q Consensus       461 d-----------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  505 (513)
                      +           +.+.+.+..... .........|...|..++|+|+++.|++++.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             CCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            6           345552211110 0011112256778999999999999997764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3.7e-21  Score=178.43  Aligned_cols=237  Identities=14%  Similarity=0.146  Sum_probs=143.0

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd  310 (513)
                      .+.+++|+|++++++++  .++.|.+||+..+. .....    ..+. ....+.+++|+|++ +.+++++ .++.|.+||
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~----~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVV----DVVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT  157 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEE----EEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-ccccc----cccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence            47789999999988765  48999999995221 11111    0122 23458899999999 6666665 899999999


Q ss_pred             cCC-cccccccce--eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccc
Q 010287          311 MRQ-SALCDTHSK--LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       311 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      +.+ +....  ..  .+...           ....+..++|+|+++++++++ . +.|.+|++......+..........
T Consensus       158 ~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~  224 (343)
T 1ri6_A          158 VSDDGHLVA--QDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP  224 (343)
T ss_dssp             ECTTSCEEE--EEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred             ecCCCceee--ecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence            986 44211  11  11111           113678899999999777654 3 9999999963122211111100000


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEE-EeCCCcEEEEecCC--CC-ccceeecCCCCceeEEEEcCCCCceeeec-C
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-L  460 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  460 (513)
                      ..    +  .....+..++|+|++++|++ +..++.|.+|++..  +. .....+..+.. +..++|+|++++|++++ .
T Consensus       225 ~~----~--~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          225 EN----F--SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             TT----C--CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred             cc----c--cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence            00    0  00111336999999998874 45789999999983  22 22233444444 78999999999888776 6


Q ss_pred             CCeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287          461 SGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       461 d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  499 (513)
                      ++.+.+.  +...-.  ......+.......+++|.|+.+.
T Consensus       298 ~~~v~v~~~d~~~g~--~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          298 SHHISVYEIVGEQGL--LHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             TCEEEEEEEETTTTE--EEEEEEEECSSSCCEEEEEEEC--
T ss_pred             CCeEEEEEEcCCCce--eeEccccccCCCCeeEEEEcccCC
Confidence            7899882  211000  001111222456778888887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=8.8e-22  Score=178.47  Aligned_cols=258  Identities=13%  Similarity=0.115  Sum_probs=177.0

Q ss_pred             eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEE
Q 010287           52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL  131 (513)
Q Consensus        52 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s  131 (513)
                      .++.++.|++||+.+++.                        ..+..|.            ..|.+++|+|  ++.+|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~sp--dg~~l~~   58 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNWSP--DGKYLLL   58 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEECT--TSSEEEE
T ss_pred             CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEECC--CCCEEEE
Confidence            346788999999876553                        1233455            7799999955  7778888


Q ss_pred             eecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceece
Q 010287          132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP  210 (513)
Q Consensus       132 ~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~  210 (513)
                      ++ ++.|++||+.+ ++......                                                         
T Consensus        59 ~~-~~~i~~~d~~~~~~~~~~~~---------------------------------------------------------   80 (297)
T 2ojh_A           59 NS-EGLLYRLSLAGDPSPEKVDT---------------------------------------------------------   80 (297)
T ss_dssp             EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred             Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence            76 88999999988 65432210                                                         


Q ss_pred             eeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc---CCeEEEEEcCCCcceeeecccCccccccccCCeEEE
Q 010287          211 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA  287 (513)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  287 (513)
                                        ..+...+.+++|+|++++|+++.   ++...+|.+........       .+.. ...+..+
T Consensus        81 ------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~~~  134 (297)
T 2ojh_A           81 ------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSYWH  134 (297)
T ss_dssp             ------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEEEE
T ss_pred             ------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCccce
Confidence                              01124477899999999999873   34555555432222221       2222 2348899


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEE
Q 010287          288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKL  365 (513)
Q Consensus       288 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~i  365 (513)
                      +|+|++..++++++.++.+++|++......   ...            +..+...+.+++|+|++++|+.+.  ++.+++
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  199 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI  199 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             EECCCCCEEEEEECCCCceEEEEEECCCCc---ceE------------cccCCCccccceECCCCCEEEEEecCCCCccE
Confidence            999999444448888999999986432110   111            222346789999999999888654  488999


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----------CcEEEEecCCCCcc-c
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAE-S  433 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~-~  433 (513)
                      |++...+..+..+..+...               +..++|+|++++|++++.+           +.|++||+.++... +
T Consensus       200 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          200 WRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             EEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            9987435556555544432               4479999999999988765           56999999877433 2


Q ss_pred             eeecCCCCceeEEEEcCCCCceeeecCC
Q 010287          434 TTLEASKNPMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       434 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d  461 (513)
                      ..+..|...+..+.|+|+++.|++++.+
T Consensus       265 ~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          265 FDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             eccCCCCcccccceECCCCCEEEEEEec
Confidence            3445778889999999999999887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=1.3e-20  Score=173.79  Aligned_cols=273  Identities=7%  Similarity=0.084  Sum_probs=178.4

Q ss_pred             EEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           41 IEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        41 v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      ..|.+++. .+++++.++.|.+||..+++..                       ..+..+.            ..+ .++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~   46 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA   46 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence            45666655 4778888999999998766531                       1222222            445 899


Q ss_pred             EeecCCCceEEEeec-CCeEEEEEccCcee-eeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       120 ~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      |+|  +++++++++. ++.|.+||+.+++. ...                                              
T Consensus        47 ~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------------------   78 (331)
T 3u4y_A           47 ITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA----------------------------------------------   78 (331)
T ss_dssp             ECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE----------------------------------------------
T ss_pred             EcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe----------------------------------------------
Confidence            955  7776766655 89999999988764 211                                              


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-C-C--eEEEEEcCCCcceeeecccC
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-D-L--RINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-d-~--~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                    ...+.....+++|+|++++++++. + +  .|.+||+.+++....     
T Consensus        79 ------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~-----  123 (331)
T 3u4y_A           79 ------------------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-----  123 (331)
T ss_dssp             ------------------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-----
T ss_pred             ------------------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE-----
Confidence                                          112223344489999999999663 3 3  999999987654322     


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEEEEeec
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                         +. ....+.+++|+|++..++++...++. |.+|++......... ...+             ........++|+|+
T Consensus       124 ---~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~spd  186 (331)
T 3u4y_A          124 ---IP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-------------SGGTRPFNITFTPD  186 (331)
T ss_dssp             ---EE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-------------CSSSSEEEEEECTT
T ss_pred             ---EE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-------------cCCCCccceEECCC
Confidence               12 23456899999999446666667788 999998753321100 0111             11245789999999


Q ss_pred             CCEEEEEe-C-CeEEEEEccCCCCC---eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEe
Q 010287          352 GRHILSRD-Y-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG  425 (513)
Q Consensus       352 ~~~l~~~~-~-~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd  425 (513)
                      |++++++. . +.|.+||+.. ++.   +..+.....                +..++|+|||++|++++ .++.|.+||
T Consensus       187 g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          187 GNFAFVANLIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            99776644 3 9999999986 666   555543322                23799999999776554 578899999


Q ss_pred             cCCCCcc-ceeecCC----CCc---eeEEEEcCCCCceeee-cCCCeEEE
Q 010287          426 CSEGSAE-STTLEAS----KNP---MRRQVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~-~~~~~~~----~~~---v~~~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      +.+++.. ...+..+    ..+   ...++|+|++++|+++ ..++.|.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  299 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV  299 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence            9887431 1222211    222   2458999999988654 55678888

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=4e-21  Score=197.36  Aligned_cols=310  Identities=8%  Similarity=-0.010  Sum_probs=193.1

Q ss_pred             ccceeEEEeecCCCceEEEeec-CC-----eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~-d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      ..+.+++|+  +||++|++++. |+     .|++||+.+++...........                      |+|+.+
T Consensus        37 ~~~~~~~~S--pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----------------------~~~~~~   92 (741)
T 2ecf_A           37 PTLMKPKVA--PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----------------------PGTETL   92 (741)
T ss_dssp             CCCEEEEEC--TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred             CCCCCceEe--cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----------------------cccccc
Confidence            569999995  48889999988 88     9999999998766554432110                      122211


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCc--
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN--  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~--  264 (513)
                                   +.           .....    ..+..  ......+.+++|+|||++|+++.++.|++||+.++.  
T Consensus        93 -------------~~-----------~~~~~----~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~  142 (741)
T 2ecf_A           93 -------------SD-----------EEKAR----RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKA  142 (741)
T ss_dssp             --------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTT
T ss_pred             -------------cc-----------hhhhh----hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcc
Confidence                         00           00000    00000  011133778999999999999867999999998662  


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC----Ccccccccc
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG----TRSFFTEII  340 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  340 (513)
                      ...        .+..|...+..++|+||| +.|++++ ++.|.+||+.++...    ..........    .........
T Consensus       143 ~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          143 AVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             SCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHS
T ss_pred             eEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCccceeccccceeeeecc
Confidence            221        345677889999999999 8888776 569999999876542    1111110000    000000011


Q ss_pred             ccEEEEEEeecCCEEEEEe-CC---------------------------------eEEEEEccCCCCCeeeeec--cccc
Q 010287          341 ASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV--HEHL  384 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~-~~---------------------------------~v~iwd~~~~~~~~~~~~~--~~~~  384 (513)
                      ..+.++.|||||++|++++ ++                                 .|++||+...++.......  +...
T Consensus       209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  288 (741)
T 2ecf_A          209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY  288 (741)
T ss_dssp             CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred             ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence            2257899999999998864 33                                 7788887630232222111  2111


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeC-----CCcEEEEecCCCCccceeecCCCC----ceeEEEEcCCCCce
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQTPSRPSR  455 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l  455 (513)
                                     +..++| |||++|++++.     +..|++||+.++... ..+..+..    .+..+.|+|+++++
T Consensus       289 ---------------~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          289 ---------------LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             ---------------EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             ---------------EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECCCCeEE
Confidence                           458999 99999987653     568999999987433 34443332    45688999999999


Q ss_pred             eeecCCCeEEE--ecCCCCCccccCCccccccCCeeEE-EEeCCCCEEE-EEcCC---cEEEEe
Q 010287          456 PLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHL-AWHPSENSIA-CAASN---SLYMYY  512 (513)
Q Consensus       456 ~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~-~~sp~~~~la-~~~~~---~~~i~~  512 (513)
                      ++++.|+.++|  ....   + . ......+...|..+ +|+||++.|+ +++.+   .+.||.
T Consensus       352 ~~~~~~g~~~l~~~~~~---~-~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSK---G-K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EEECTTSSCEEEEECSS---S-C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             EEecCCCccEEEEEcCC---C-C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            99999997777  2211   0 0 11223456678887 5999999876 44444   567774

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.4e-21  Score=198.28  Aligned_cols=328  Identities=11%  Similarity=0.032  Sum_probs=198.8

Q ss_pred             EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      +++|+|+|++++++ .|+.|++||+.+++..                       ..+.+|..     .    ...+.+++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~-----~----~~~~~~~~   66 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM-----K----SVNASNYG   66 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH-----H----TTTCSEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc-----c----ccceeeEE
Confidence            78999999766665 5899999998876631                       11222220     0    01388999


Q ss_pred             EeecCCCceEEEeec---------CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       120 ~~~~~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      |+|  ||++|++++.         |+.|++||+.+++......+                                    
T Consensus        67 ~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l------------------------------------  108 (719)
T 1z68_A           67 LSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL------------------------------------  108 (719)
T ss_dssp             ECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC------------------------------------
T ss_pred             ECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec------------------------------------
Confidence            955  8889998876         78999999998864210000                                    


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeec
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                               ...+..++|+|||+.|+.+.++.|++|++.+++.. .+.
T Consensus       109 -----------------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-~l~  146 (719)
T 1z68_A          109 -----------------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-QIT  146 (719)
T ss_dssp             -----------------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-ECC
T ss_pred             -----------------------------------------CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-EEe
Confidence                                                     02367799999999999998899999999866532 211


Q ss_pred             -ccCc-cccccccC---------CeEEEEEeCCCCeEEEEEeCCC----------------------------------c
Q 010287          271 -DVKP-ANMEDLTE---------VITSAEFHPTHCNMLAYSSSKG----------------------------------S  305 (513)
Q Consensus       271 -~~~~-~~~~~~~~---------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~  305 (513)
                       +... ..+.++..         ...+++|+||| +.|++++.|.                                  .
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~  225 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR  225 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence             0000 00111111         12489999999 8888877652                                  6


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-----CeEEEEE----ccCCCCCee
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPVA  376 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-----~~v~iwd----~~~~~~~~~  376 (513)
                      |++||+.++.....  ..+..+      ..+.+|...+.+++|+||++++++..+     ..|.+||    +.+ ++...
T Consensus       226 l~~~d~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~  296 (719)
T 1z68_A          226 IFIIDTTYPAYVGP--QEVPVP------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPK  296 (719)
T ss_dssp             EEEEESSCHHHHCC--EECCCC------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCG
T ss_pred             EEEEECCCCCccce--eEccCC------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEE
Confidence            78888877653100  000000      013345678999999999887776432     3588888    654 44333


Q ss_pred             ee----ecccccccccccccccCCccceeeEEEeCCCCEEEE--EeCCC--cEEEEecCCCCccceeecCCCCceeEEEE
Q 010287          377 TF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQVQ  448 (513)
Q Consensus       377 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  448 (513)
                      .+    ..+......          .....+.|+|||+.|+.  ...+|  .|++|++.++.  ...+..+...+..+.+
T Consensus       297 ~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~  364 (719)
T 1z68_A          297 TQEHIEESRTGWAGG----------FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFR  364 (719)
T ss_dssp             GGEEEEECSSSCSSS----------SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEE
T ss_pred             EEecccccCCceEcc----------ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEE
Confidence            33    233322100          00015789999996554  44555  56777776553  3455555566777777


Q ss_pred             cCCCCceeeecCC-----CeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287          449 TPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA  503 (513)
Q Consensus       449 ~~~~~~l~~~~~d-----~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  503 (513)
                      . +++.++..+.+     +..++  ..  +.......+.....++...+..++|+||+++|+..
T Consensus       365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~  427 (719)
T 1z68_A          365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV  427 (719)
T ss_dssp             E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred             E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence            7 77777665544     66666  21  11110001111111245678899999999988843

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=4.4e-20  Score=171.14  Aligned_cols=302  Identities=12%  Similarity=0.112  Sum_probs=181.2

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCC-CcEEEEEee--CCCCCCCccCccccccccccCCC
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHP   88 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~   88 (513)
                      .....|++.. -+.........|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..                   
T Consensus        15 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------   74 (343)
T 1ri6_A           15 QQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------   74 (343)
T ss_dssp             TEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------
T ss_pred             CeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------
Confidence            3445576642 1222223345677889999999999998888876 899999986  3221                   


Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI  167 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                        .....+..+             ..+..++|+|  +++++++++. ++.|.+||+..+.......              
T Consensus        75 --~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------  123 (343)
T 1ri6_A           75 --TFAAESALP-------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--------------  123 (343)
T ss_dssp             --EEEEEEECS-------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEE--------------
T ss_pred             --eeccccccC-------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccc--------------
Confidence              011112111             4588999954  7777777654 8999999995332111100              


Q ss_pred             ccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEE
Q 010287          168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF  247 (513)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  247 (513)
                                                                                  .......+.+++|+|+++++
T Consensus       124 ------------------------------------------------------------~~~~~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A          124 ------------------------------------------------------------VVEGLDGCHSANISPDNRTL  143 (343)
T ss_dssp             ------------------------------------------------------------EECCCTTBCCCEECTTSSEE
T ss_pred             ------------------------------------------------------------cccCCCCceEEEECCCCCEE
Confidence                                                                        00111237788999999987


Q ss_pred             EEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--ccccccccee
Q 010287          248 ISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKL  323 (513)
Q Consensus       248 ~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~  323 (513)
                      +++  .++.|.+||+.+.......... . ........+..++|+|++..+++++..++.|.+||+..  +...  ....
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~  219 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPA-E-VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQT  219 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-E-EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEE
T ss_pred             EEecCCCCEEEEEEecCCCceeeeccc-c-cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEee
Confidence            776  5999999999863322211000 0 01112356889999999933445555899999999954  3221  0111


Q ss_pred             eccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCC---CeeeeecccccccccccccccCCcc
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIF  398 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
                      .......      ......+..++|+|++++|+++.  ++.|.+||+.....   .+..+..+..               
T Consensus       220 ~~~~~~~------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---------------  278 (343)
T 1ri6_A          220 LDMMPEN------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---------------  278 (343)
T ss_dssp             EECSCTT------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---------------
T ss_pred             ccccCcc------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---------------
Confidence            1100000      01123577899999999887544  39999999983222   2222222221               


Q ss_pred             ceeeEEEeCCCCEEEEEe-CCCcEEEEecC--CCCcc-ceeecCCCCceeEEEEcCC
Q 010287          399 DKFECCLSGDGGRVATGS-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       399 ~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~--~~~~~-~~~~~~~~~~v~~~~~~~~  451 (513)
                       +..++|+|++++|++++ .++.|.+|++.  ++... ...+... .....+++.++
T Consensus       279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~  333 (343)
T 1ri6_A          279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH  333 (343)
T ss_dssp             -CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred             -cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence             23799999999888877 68999999554  44221 2233332 23335566554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1.1e-20  Score=192.90  Aligned_cols=292  Identities=11%  Similarity=0.060  Sum_probs=188.6

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..|++++|||| .+++.+. ++.|++||+.+++.                        ..+..+.            ..+
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~  123 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV------------------------TYLFDTN------------EET  123 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence            56999999999 6666553 58999999876543                        1223333            568


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccC-----ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      .+++|+|  +++.|++ +.|+.|++|++.+     ++...........                                
T Consensus       124 ~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~--------------------------------  168 (706)
T 2z3z_A          124 ASLDFSP--VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTET--------------------------------  168 (706)
T ss_dssp             TTCEECT--TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTT--------------------------------
T ss_pred             cCCcCCC--CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCC--------------------------------
Confidence            8999955  8888888 4789999999988     6544322111000                                


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-------------------
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-------------------  251 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------------------  251 (513)
                                      + .+-..             ....+...+.+++|+|||++|+++.                   
T Consensus       169 ----------------~-~~g~~-------------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~  218 (706)
T 2z3z_A          169 ----------------L-VYGQA-------------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA  218 (706)
T ss_dssp             ----------------E-EESSC-------------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred             ----------------e-Ecccc-------------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence                            0 00000             0011223466788888888888762                   


Q ss_pred             ---------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-----cEEEEEc
Q 010287          252 ---------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDM  311 (513)
Q Consensus       252 ---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~vwd~  311 (513)
                                     +..|++||+.+++... +.     ....|...+.+++|+|++ +.|++++.++     .|.+||+
T Consensus       219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVY-LQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             EEEEECCCBTTSCCCEEEEEEEETTTTEEEE-CC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEET
T ss_pred             ceEEeeCCCCCCCCCeeEEEEEECCCCceEe-ec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEEC
Confidence                           3679999998655321 10     112466779999999999 8888877775     8999999


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      .+++..    ..+......       .....+.++.|+|  ||+++++++. +.+++|++...+..+..+..+...    
T Consensus       292 ~~g~~~----~~~~~~~~~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~----  356 (706)
T 2z3z_A          292 ETGRFV----RTLFVETDK-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE----  356 (706)
T ss_dssp             TTCCEE----EEEEEEECS-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC----
T ss_pred             CCCcee----eEEEEccCC-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE----
Confidence            887321    111111000       0001246789999  9998888765 888899887435666666554432    


Q ss_pred             ccccccCCccceee-EEEeCCCCEEEEEe-CCC----cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC-
Q 010287          389 CDLYENDSIFDKFE-CCLSGDGGRVATGS-YSN----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-  461 (513)
Q Consensus       389 ~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  461 (513)
                                 +.. ++|+|+++.|+.++ .++    .|+.||+.++.  ...+. +...+..+.|+|++++++....+ 
T Consensus       357 -----------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          357 -----------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             -----------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECTTSSEEEEEEECS
T ss_pred             -----------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECCCCCEEEEEecCC
Confidence                       224 79999999887555 444    67777777653  23333 56678899999999988766433 


Q ss_pred             ---CeEEE
Q 010287          462 ---GVVRR  466 (513)
Q Consensus       462 ---~~i~~  466 (513)
                         +.+.+
T Consensus       423 ~~p~~i~l  430 (706)
T 2z3z_A          423 TVPRKVTV  430 (706)
T ss_dssp             SCSCEEEE
T ss_pred             CCCcEEEE
Confidence               45766

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.3e-20  Score=191.22  Aligned_cols=295  Identities=11%  Similarity=0.030  Sum_probs=177.0

Q ss_pred             cEEEEEEcCCCCEEEeecCC---------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           37 IISAIEFDKSGDHLATGDRG---------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      .|.+++|||||++||+++.+         +.|.+||+.+++..                     ......+|.       
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~-------  113 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------------SLDPPEVSN-------  113 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------------ECCCTTCCS-------
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------------eccCCcccc-------
Confidence            49999999999999998764         78889998776531                     111223344       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..+..++|+|  ||+.|+.++. +.|++|++.+++...+........  ...|.                     
T Consensus       114 -----~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--~~~g~---------------------  162 (723)
T 1xfd_A          114 -----AKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--IYNGL---------------------  162 (723)
T ss_dssp             -----CCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT--EEEEE---------------------
T ss_pred             -----ccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc--eECcc---------------------
Confidence                 5588999965  8888988876 789999999887554432211000  00000                     


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c---------------
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---------------  251 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---------------  251 (513)
                                          .-|..               ...-...+.+++|+|||+.|+++ .               
T Consensus       163 --------------------~~~v~---------------~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          163 --------------------SDWLY---------------EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             --------------------CCHHH---------------HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             --------------------cceeE---------------EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence                                00000               00000123556666666666554 2               


Q ss_pred             -------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----CCcEEE
Q 010287          252 -------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRL  308 (513)
Q Consensus       252 -------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v  308 (513)
                                         +..|++||+.+++....+..  +..+..+...+..++|+||+ +++++...    +..|.+
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP--PDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC--CCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC--CccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEE
Confidence                               23799999986653222110  01122346678999999999 77766643    357999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccE----EEEEEeecCCEEEEE--eC-C------eEEEEEccCCCCC-
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI----SDIKFARNGRHILSR--DY-M------TLKLWDINMDSGP-  374 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~i~~sp~~~~l~~~--~~-~------~v~iwd~~~~~~~-  374 (513)
                      ||+.+++.    ...+...           +...+    ..++|+|||+.|+..  .. +      .|.+||+...+.. 
T Consensus       285 ~d~~~g~~----~~~~~~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  349 (723)
T 1xfd_A          285 CDATTGVC----TKKHEDE-----------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (723)
T ss_dssp             EETTTCCE----EEEEEEE-----------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EeCCCCcc----eEEEEec-----------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence            99988764    2222111           11222    368999999977753  33 6      4666663222331 


Q ss_pred             -eeeeecccccccccccccccCCcccee-eEEEeCCCCEEEEEeCC---CcEEEEecCCCCc-cceeecC---CCCceeE
Q 010287          375 -VATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYS---NLFRVFGCSEGSA-ESTTLEA---SKNPMRR  445 (513)
Q Consensus       375 -~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~---~~~~v~~  445 (513)
                       ...+......               +. .++|+|||+.|+..+.+   +.+++|++..... ....+..   +...+..
T Consensus       350 ~~~~l~~~~~~---------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  414 (723)
T 1xfd_A          350 NIQSITSGDWD---------------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS  414 (723)
T ss_dssp             CCCBSCCSSSC---------------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred             ceeEeecCCeE---------------EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEE
Confidence             3333321111               12 36899999999866554   7899999875432 2233433   5667889


Q ss_pred             EEEcCCCCceeee
Q 010287          446 QVQTPSRPSRPLG  458 (513)
Q Consensus       446 ~~~~~~~~~l~~~  458 (513)
                      +.|+|++++++..
T Consensus       415 ~~~spdg~~l~~~  427 (723)
T 1xfd_A          415 ASFSHSMDFFLLK  427 (723)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            9999999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.9e-19  Score=167.13  Aligned_cols=269  Identities=9%  Similarity=0.080  Sum_probs=166.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecC---CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ....+...+..++|+|+|+ |++++.   ++.|.+|++.++...                     ....+..+.      
T Consensus        34 ~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~------   85 (347)
T 3hfq_A           34 GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG------   85 (347)
T ss_dssp             EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES------
T ss_pred             eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC------
Confidence            3445667888999999999 554443   689999999665421                     112223333      


Q ss_pred             ccccccccceeEEEeecCCCceEEEee-cCCeEEEEEcc-CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                            ..+..++|+|  ++++|++++ .++.|.+|++. ++.............                    .|.  
T Consensus        86 ------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--------------------~p~--  135 (347)
T 3hfq_A           86 ------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH--------------------GPR--  135 (347)
T ss_dssp             ------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC--------------------CSS--
T ss_pred             ------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC--------------------CCC--
Confidence                  6688999955  788888887 78999999995 333322221110000                    000  


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  263 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~  263 (513)
                                                                 ...+...+.+++|+|+++++++. .++.|.+|++...
T Consensus       136 -------------------------------------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A          136 -------------------------------------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             -------------------------------------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             -------------------------------------------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence                                                       01122458889999999955555 5899999999833


Q ss_pred             cceeeecccCccccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--cccccccceeeccccCCCCcccccccc
Q 010287          264 NQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      .......     .+. .....+..++|+|++..++++...++.|.+|++..  +..  .....+......      ....
T Consensus       173 g~~~~~~-----~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~--~~~~~~~~~~~~------~~~~  239 (347)
T 3hfq_A          173 GQLSEQS-----VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF--TQLGIVKTIPAD------YTAH  239 (347)
T ss_dssp             SCEEEEE-----EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESSCTT------CCSC
T ss_pred             CcEEEee-----eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce--EEeeeeeecCCC------CCCC
Confidence            3222111     111 12335788999999933555567789999999874  332  111111111000      0011


Q ss_pred             ccEEEEEEeecCCEEEE-Ee-CCeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          341 ASISDIKFARNGRHILS-RD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~-~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      ..+..++|+|||++|++ .. ++.|.+|++...+.  .+..+..+...               +..++|+|||++|++++
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEEE
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEEE
Confidence            35889999999998865 44 39999999974222  22233222211               23799999999988877


Q ss_pred             C-CCcEEEEecC
Q 010287          417 Y-SNLFRVFGCS  427 (513)
Q Consensus       417 ~-dg~i~vwd~~  427 (513)
                      . ++.|.+|++.
T Consensus       305 ~~~~~v~v~~~d  316 (347)
T 3hfq_A          305 QNTDNATLYARD  316 (347)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             cCCCcEEEEEEe
Confidence            5 5899999553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.5e-19  Score=166.76  Aligned_cols=239  Identities=9%  Similarity=0.050  Sum_probs=150.8

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLI  309 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vw  309 (513)
                      + +++|+|++++++++  .++.|.+||+.+++....       .+..+..+..+++|+|++ ++++++..++   .|.+|
T Consensus        43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV-------AIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE-------EEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEE
T ss_pred             c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE-------ecccCCCCccceEECCCC-CEEEEecCCCCcccEEEE
Confidence            5 89999999977665  489999999987664122       233444544459999999 7777555553   89999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-eC-Ce-EEEEEccCCCCCeeeeeccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MT-LKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      |+.+++.    ...+...             ....+++|+|+|++++++ .+ +. |.+|++...+... ........  
T Consensus       114 d~~~~~~----~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-~~~~~~~~--  173 (331)
T 3u4y_A          114 SFLKNKF----ISTIPIP-------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF-DTGQEFIS--  173 (331)
T ss_dssp             ETTTTEE----EEEEECC-------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE-EEEEEEEC--
T ss_pred             ECCCCCe----EEEEECC-------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe-ecCCcccc--
Confidence            9988765    2222221             346899999999866654 44 77 9999998533222 11100000  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCcc--ceeecCCCCceeEEEEcCCCCceeee-cCCC
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLG-SLSG  462 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~  462 (513)
                            ...   ....++|+|+|++++++ ..++.|++||+.++...  ...+... ..+..++++|++++++.+ ..++
T Consensus       174 ------~~~---~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          174 ------GGT---RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             ------SSS---SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEE
T ss_pred             ------CCC---CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCC
Confidence                  000   12379999999976554 46899999999877431  3444433 556789999999977554 4567


Q ss_pred             eEEEecCC--CCCccc-cCCccc---cccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287          463 VVRRVKGA--DNSALD-ANGNAF---DFSMKLLHLAWHPSENSIACAA--SNSLYMYY  512 (513)
Q Consensus       463 ~i~~~~~~--~~~~~~-~~~~~~---~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~  512 (513)
                      .|.+.+..  +..... ......   .....+..++|+||+++|++++  ++.+.+|.
T Consensus       244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            77772211  110000 000000   0112235689999999887554  45788886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3.6e-20  Score=184.56  Aligned_cols=269  Identities=13%  Similarity=0.042  Sum_probs=179.3

Q ss_pred             ccccEEEEEEcCCCCEEEeecC-CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      +..+|.+++|+|||++||+++. ||+++||++.+++.                        ..+..|.           .
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~-----------~   64 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREP-----------I   64 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSC-----------C
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeeccc-----------c
Confidence            4678999999999999999887 99999999865543                        1222232           0


Q ss_pred             ccceeEEEeecCCCceEEEeec---CCeEEEEEccC---ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~---d~~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      ..+..++|+|  + ..+++++.   +...++|.+..   +.....                                   
T Consensus        65 ~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-----------------------------------  106 (582)
T 3o4h_A           65 NSVLDPHYGV--G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-----------------------------------  106 (582)
T ss_dssp             SEECEECTTC--S-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-----------------------------------
T ss_pred             cccccccCCC--C-eEEEEeccCCCCcceEEEEEeccCCCccccc-----------------------------------
Confidence            4688999965  5 56666654   45567766543   111100                                   


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE--EEEEcCCeEEEEEcCCCc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISADDLRINLWNLEISN  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~d~~i~vwd~~~~~  264 (513)
                                                                ... ..+...+|+|+++.  ++++.++.+.+||+.+++
T Consensus       107 ------------------------------------------~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A          107 ------------------------------------------EAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             ------------------------------------------TTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             ------------------------------------------cCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence                                                      000 11334577787754  444555556699998664


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC----CcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  340 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (513)
                      .. .        +..+..  .+++|+||| +.|++++.+    +.|++||+.+++.     +.            +.+|.
T Consensus       144 ~~-~--------l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~------------l~~~~  194 (582)
T 3o4h_A          144 LR-E--------LARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RV------------FDSGE  194 (582)
T ss_dssp             EE-E--------EEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EE------------ECCSS
T ss_pred             EE-E--------eecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eE------------eecCC
Confidence            32 2        122222  789999999 888888777    7899999987764     22            23344


Q ss_pred             ccEEEEEEeecCCEEEEEeC-C--eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287          341 ASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY  417 (513)
Q Consensus       341 ~~v~~i~~sp~~~~l~~~~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  417 (513)
                      +.+..++|||||+.|++++. +  .|++||+.. ++.. .+..+........       ..+....+|+|||.++++++.
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEE
T ss_pred             CccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEc
Confidence            67899999999999997654 6  899999985 5544 5544443221000       000112339999988899999


Q ss_pred             CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       418 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      |+.+++|++  + +...   .....+..+.++ +++++++++.+..
T Consensus       266 ~g~~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          266 EGRSAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             TTEEEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             CCcEEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence            999999999  4 2222   334678889999 9999888877644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=4.9e-20  Score=170.35  Aligned_cols=233  Identities=13%  Similarity=0.067  Sum_probs=158.1

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-----------
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-----------  301 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------  301 (513)
                      +.+++|+|+++.++.+  .++.|.+||+.+++....+. ..  ....+...+..++|+|++ +.++++.           
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cC--CcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence            5678999999876554  58999999998766443221 00  000022356789999998 7777775           


Q ss_pred             -CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeec
Q 010287          302 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       302 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~  380 (513)
                       .++.|.+||+.+++.    ...+...             ..+.+++|+|++++|+++ ++.|.+||+.+ ++....+..
T Consensus       112 ~~~~~i~v~d~~~~~~----~~~~~~~-------------~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~  172 (337)
T 1pby_B          112 VQPTRVALYDAETLSR----RKAFEAP-------------RQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI  172 (337)
T ss_dssp             ECCCEEEEEETTTTEE----EEEEECC-------------SSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred             ccCceEEEEECCCCcE----EEEEeCC-------------CCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence             579999999987654    2222221             346778999999988887 57899999986 665555543


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-C-----------------------cEEEEecCCCCccceee
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL  436 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----------------------~i~vwd~~~~~~~~~~~  436 (513)
                      +....                .+.|+|+++.|+..+.+ +                       .|.+||+.+++.....+
T Consensus       173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            33111                23678888876554432 2                       46899999875443444


Q ss_pred             cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          437 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       437 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ..+...+..++++|++++++++  ++.|.+.+.....   . ...+.....+.+++|+||+++|++++ ++.+.+|.
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---S-IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---E-EEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---C-cceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            5566677789999999999888  7888883222111   1 11222346789999999999888666 67788886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=5.6e-19  Score=164.40  Aligned_cols=233  Identities=11%  Similarity=0.056  Sum_probs=152.5

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCc-ccc-ccccCCeEEEEEeCCCCeEEEEEe--CCCcEEE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-ANM-EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL  308 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v  308 (513)
                      +..++|+|+++.++.+  .++.|.+||..+++....+. ... ... ......+.+++|+|++ +.+++++  .++.|.+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLV-LDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV  168 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEE-SCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEe-cCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence            5668899999966655  48999999998776443221 000 000 0001127889999998 5555444  4889999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      ||+.+++.    ...+...            ...+.+++|+|+++++++++. +.|.+||+.+ ++....+........ 
T Consensus       169 ~d~~~~~~----~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~-  230 (353)
T 3vgz_A          169 VDGGNIKL----KTAIQNT------------GKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKE-  230 (353)
T ss_dssp             EETTTTEE----EEEECCC------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSC-
T ss_pred             EcCCCCce----EEEecCC------------CCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCC-
Confidence            99988765    2222211            134678899999999988775 9999999986 666655544221000 


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee-eecCCCeEE
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVVR  465 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~  465 (513)
                                ..+..++|+|+++++++++. ++.|.+||+.+++. ...+.... + ..++++|++++++ +...++.|.
T Consensus       231 ----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          231 ----------HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             ----------CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS-C-CCEEEETTTTEEEEEETTTTEEE
T ss_pred             ----------cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC-C-ceEEECCCCCEEEEEECCCCeEE
Confidence                      01237899999998776664 59999999988743 33443322 2 5789999999654 455789998


Q ss_pred             EecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          466 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      +.+.....   . ...+.....+..++|+||+++|+++.
T Consensus       298 ~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          298 VIDAKSYK---V-VKTFDTPTHPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEETTTTE---E-EEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCe---E-EEEEecCCCCCeEEEcCCCCEEEEEE
Confidence            83322111   1 11223355789999999999877655

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=1.1e-18  Score=165.92  Aligned_cols=229  Identities=10%  Similarity=0.114  Sum_probs=144.7

Q ss_pred             ccccccEEEEEEcCCCCEEE----eecCCCcEEEEEeeCCCCCC-CccCccccccccccCCCcceEeccccCCCCccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~la----tg~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  106 (513)
                      ..|...|++++|+|+|++||    +|+.|+.|+|||+.+..... ...             ........+.+|.      
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~h~------  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK-------------RPFAYHKLLKDAG------  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC-------------CCSEEEECCCSGG------
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc-------------ceeeeeeccCCCC------
Confidence            44667899999999999999    89999999999986541000 000             0111234466777      


Q ss_pred             ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                            ..|.+++|+|. ++.+|++++.||+|++||++++.....                                   
T Consensus       150 ------~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~-----------------------------------  187 (434)
T 2oit_A          150 ------GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA-----------------------------------  187 (434)
T ss_dssp             ------GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE-----------------------------------
T ss_pred             ------CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee-----------------------------------
Confidence                  88999999773 256899999999999999987642211                                   


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                               ..+|...|.+++|+|++++|++| .||.|++||.+ +..
T Consensus       188 -----------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~  225 (434)
T 2oit_A          188 -----------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE  225 (434)
T ss_dssp             -----------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred             -----------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence                                                     23566789999999999999999 79999999998 332


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCC------cEEEEEcCCcccccccceeeccccCCCCcccccc
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  338 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (513)
                      ...+ .........|...|.+++|++++ .++++ +..+|      .+++|+++......  ...+.......  ..+.+
T Consensus       226 ~~~~-~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~--~~~~~  299 (434)
T 2oit_A          226 KKVI-PCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPC--YGSCT  299 (434)
T ss_dssp             EEEE-CCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSS--CCCCS
T ss_pred             cccc-cCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCC--CCCCC
Confidence            2211 11000011244589999999987 55543 44453      38999998653210  01111111100  00011


Q ss_pred             ccccEEEEEEeecCCEEEEEeC--CeEEEEEcc
Q 010287          339 IIASISDIKFARNGRHILSRDY--MTLKLWDIN  369 (513)
Q Consensus       339 ~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~  369 (513)
                      .+.+-..+.+-++.+++++++.  ..|.+....
T Consensus       300 ~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          300 ERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            1222333444477777777553  667777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.7e-18  Score=177.09  Aligned_cols=335  Identities=9%  Similarity=0.051  Sum_probs=190.2

Q ss_pred             cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  116 (513)
                      ...+++|+|||++|+++  ||.|++|++.+++..                       ..+.+|...       .......
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~   65 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN   65 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence            45689999999999997  899999998877631                       223444410       0001234


Q ss_pred             eEEEeecCCCceEEEeecC---------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      .+.|+  +|+++++.++.+         +.+.+||+.+++...+                                    
T Consensus        66 ~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------------  107 (740)
T 4a5s_A           66 DYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------------  107 (740)
T ss_dssp             EEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------------------------------
T ss_pred             ceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc------------------------------------
Confidence            57885  488899998876         5566999988864331                                    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCccee
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF  267 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~  267 (513)
                                                               ..|...+...+|||||+.|+.+.++.|++|++.++... 
T Consensus       108 -----------------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~-  145 (740)
T 4a5s_A          108 -----------------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY-  145 (740)
T ss_dssp             -----------------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE-
T ss_pred             -----------------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE-
Confidence                                                     23345588999999999999998899999999866532 


Q ss_pred             eecccCccccccccCC-----------------eEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCcccc------------
Q 010287          268 NIVDVKPANMEDLTEV-----------------ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALC------------  317 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~------------  317 (513)
                      ++      +..++...                 ...+.|+||| +.|+.++.|.. +.+|++......            
T Consensus       146 ~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          146 RI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             EC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             EE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            21      11222222                 2358999999 77777764432 444443210000            


Q ss_pred             --------cccceeecccc---CC--CCccc-----cccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccCCCC-
Q 010287          318 --------DTHSKLFEEQE---AP--GTRSF-----FTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSG-  373 (513)
Q Consensus       318 --------~~~~~~~~~~~---~~--~~~~~-----~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~~~~-  373 (513)
                              ...+..++...   ..  .....     +.+|...+..++|+|||+.++...    . ..|.+||+.+ ++ 
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~  297 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSG  297 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTT
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Ccc
Confidence                    00011111111   00  00000     113567799999999999776532    2 4799999986 54 


Q ss_pred             ---C--eeee--ecccccccccccccccCCccceeeEEEeCCCCEEE-EEe-CC--CcEEEEecCCCCccceeecCCCCc
Q 010287          374 ---P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGS-YS--NLFRVFGCSEGSAESTTLEASKNP  442 (513)
Q Consensus       374 ---~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~d--g~i~vwd~~~~~~~~~~~~~~~~~  442 (513)
                         +  +..+  ..+...+..          .......|+|||+.|+ ..+ .+  ..|++||+.++..  ..+......
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~  365 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWE  365 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSC
T ss_pred             ccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEE
Confidence               1  2222  223322110          0012578999999877 555 33  4688888876532  233333444


Q ss_pred             eeEEEEcCCCCceee-ecC--C----CeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          443 MRRQVQTPSRPSRPL-GSL--S----GVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       443 v~~~~~~~~~~~l~~-~~~--d----~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      +..+.. ++++.++. ++.  +    ..+..+........ .+.............++|||++++++...
T Consensus       366 v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          366 VIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             EEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             EEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence            544432 44665543 333  1    23333111110000 01110011235688999999999887443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=1.4e-18  Score=161.27  Aligned_cols=213  Identities=9%  Similarity=0.054  Sum_probs=135.2

Q ss_pred             ccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc----ccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          231 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      +...+..++|+|++++|+++  .++.|.+|++........+......    ....+...+.+++|+|++ +++++...++
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~  162 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD  162 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence            33457789999999988876  4899999999643322211100000    001123458899999999 6777777789


Q ss_pred             cEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCee---ee
Q 010287          305 SIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TF  378 (513)
Q Consensus       305 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~---~~  378 (513)
                      .|.+||+. ++....  ...+....           ...+..++|+|||+++++++ . +.|.+|++......+.   .+
T Consensus       163 ~v~~~~~~~~g~~~~--~~~~~~~~-----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  229 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSE--QSVLTMEA-----------GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV  229 (347)
T ss_dssp             EEEEEEECTTSCEEE--EEEEECCT-----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEECCCCcEEE--eeeEEcCC-----------CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence            99999998 443211  11111111           12567899999999777754 3 8999999884212221   11


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCC--ccceeecCCCCceeEEEEcCCCCce
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSR  455 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l  455 (513)
                      .......         .....+..++|+|||++|+ +...++.|.+|++....  .....+..+...+..++|+|++++|
T Consensus       230 ~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          230 KTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             ESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             eecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence            1111000         0001134799999999875 55678999999987332  2224455556667899999999988


Q ss_pred             eeecC-CCeEEE
Q 010287          456 PLGSL-SGVVRR  466 (513)
Q Consensus       456 ~~~~~-d~~i~~  466 (513)
                      ++++. ++.+.+
T Consensus       301 ~v~~~~~~~v~v  312 (347)
T 3hfq_A          301 VVVNQNTDNATL  312 (347)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEEcCCCcEEE
Confidence            87765 488887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.8e-19  Score=179.58  Aligned_cols=258  Identities=10%  Similarity=0.041  Sum_probs=177.2

Q ss_pred             ccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      .+|++++|+|  ||+.|++++. ||+++||++.+++...+.                                       
T Consensus        22 ~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------------   60 (582)
T 3o4h_A           22 VEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------------   60 (582)
T ss_dssp             SCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred             cchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence            5699999977  8889998876 999999998766543321                                       


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc----CCeEEEEEcCC--Ccc
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD----DLRINLWNLEI--SNQ  265 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----d~~i~vwd~~~--~~~  265 (513)
                                                           ..+...+..++|+|| +.+++++    +....+|.+..  ...
T Consensus        61 -------------------------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           61 -------------------------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             -------------------------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             -------------------------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence                                                 122245788999999 6666653    45566665543  222


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ...+        .. ...+...+|+|++...+++.+.++.+.+||+.+++..    ....             +..  .+
T Consensus       103 ~~~l--------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~-------------~~~--~~  154 (582)
T 3o4h_A          103 EQRL--------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELAR-------------LPG--FG  154 (582)
T ss_dssp             CEEC--------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEE-------------ESS--CE
T ss_pred             cccc--------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----Eeec-------------CCC--ce
Confidence            2221        11 1123456788887555555555566669999877531    1111             112  78


Q ss_pred             EEEeecCCEEEEEe-C----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC-
Q 010287          346 IKFARNGRHILSRD-Y----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN-  419 (513)
Q Consensus       346 i~~sp~~~~l~~~~-~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-  419 (513)
                      ++|||||++|++++ +    ..|++||+.. ++. ..+..+...               +..++|||||++|+++..++ 
T Consensus       155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECSSC
T ss_pred             EEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCCCe
Confidence            99999999999643 3    6799999885 443 455555443               34899999999999888888 


Q ss_pred             -cEEEEecCCCCccceeecCCCCceeEEE--------EcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeE
Q 010287          420 -LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLH  490 (513)
Q Consensus       420 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  490 (513)
                       .|++||+.++...  .+..+...+..+.        |+|+|.++++++.|+.+++...++    ...    .....|.+
T Consensus       218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~----~~~----~~~~~v~~  287 (582)
T 3o4h_A          218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGE----RVE----APQGNHGR  287 (582)
T ss_dssp             EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTE----EEC----CCSSEEEE
T ss_pred             eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECC----eec----cCCCceEE
Confidence             8999999987443  6677777777777        999998889999999999922211    111    23467899


Q ss_pred             EEEeCCCCEEEEEcC
Q 010287          491 LAWHPSENSIACAAS  505 (513)
Q Consensus       491 ~~~sp~~~~la~~~~  505 (513)
                      ++|+ +++++++++.
T Consensus       288 ~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          288 VVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEEE-TTEEEEEEEE
T ss_pred             EEec-CCEEEEEEcC
Confidence            9999 9998887663

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=3e-19  Score=169.91  Aligned_cols=230  Identities=9%  Similarity=0.008  Sum_probs=151.9

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ....++++++++++.++++|+.++ ++||+............           +.. ....        +.....+.+..
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-----------~~~-~~~~--------~~~~~~~~~~~   93 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-----------DPN-KIVD--------KVQGLLVPMKF   93 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-----------CTT-CEEE--------CCCCEEECCSS
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-----------Ccc-cccc--------cCccccccCCC
Confidence            345789999999999999999887 99998643211000000           000 0000        00011122336


Q ss_pred             cceeEEEeecCCCceEE----EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~----s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                      .|.+++|+|  ++.+|+    +++.|++|++||+.++.....   ..                                 
T Consensus        94 ~v~~l~~sp--dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~~---------------------------------  135 (434)
T 2oit_A           94 PIHHLALSC--DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---QQ---------------------------------  135 (434)
T ss_dssp             CEEEEEECT--TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---SS---------------------------------
T ss_pred             cccEEEEcC--CCCEEEEEEeccCCCceEEEEEccccccCCc---CC---------------------------------
Confidence            799999955  778898    788899999999976520000   00                                 


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCccee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                    ...+               .....+.+|...|.+++|+|+ +.+|+++ .||+|++||++++....
T Consensus       136 --------------~~~~---------------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          136 --------------KRPF---------------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             --------------CCCS---------------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred             --------------ccee---------------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence                          0000               000113578899999999997 7889988 79999999999764332


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                              ...+|...|.+++|+|++ ++|++|+.||.|++||++ +..    ...+..+...     ...|...+.+++
T Consensus       187 --------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~~-----~~~~~~~v~~v~  247 (434)
T 2oit_A          187 --------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPFY-----ESDHPVRVLDVL  247 (434)
T ss_dssp             --------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTTC-----CTTSCEEEEEEE
T ss_pred             --------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCccc-----CCCCceeEEEEE
Confidence                    234578899999999998 999999999999999987 332    2222222110     112345799999


Q ss_pred             EeecCCEEEEEe--C------CeEEEEEccC
Q 010287          348 FARNGRHILSRD--Y------MTLKLWDINM  370 (513)
Q Consensus       348 ~sp~~~~l~~~~--~------~~v~iwd~~~  370 (513)
                      |++++.++++.+  +      ..+++|+++.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            999988887632  2      2499999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.3e-17  Score=153.95  Aligned_cols=206  Identities=13%  Similarity=0.115  Sum_probs=128.5

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc------CccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      ....+++  ++++|+++  .++.|.+|++........+...      .+.....+...+.+++|+|++..++++...++.
T Consensus       101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence            3566777  78877776  5899999999754433221100      000111233456889999999334555556899


Q ss_pred             EEEEEcCCccc------cccc--ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCC-
Q 010287          306 IRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP-  374 (513)
Q Consensus       306 i~vwd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~-  374 (513)
                      |.+|++.....      ....  ......           .+...+..++|+|+|+++++++  ++.|.+|++.. +.. 
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~  246 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFKV-----------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLD  246 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEEC-----------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEE
T ss_pred             EEEEEEcCCCCcccccceeecccccceec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceE
Confidence            99999875431      1000  001111           1124578899999999888765  39999999984 432 


Q ss_pred             -eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC--CCcEEEEecC--CCCc-cceeecCCCCceeEEEE
Q 010287          375 -VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQVQ  448 (513)
Q Consensus       375 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~--~~~~-~~~~~~~~~~~v~~~~~  448 (513)
                       +..+......            ......++|+|||++|+++..  ++.|.+|++.  ++.. ....+.. ...+..++|
T Consensus       247 ~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          247 EIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence             1222111110            001237999999999876665  4899999986  3322 2233333 456779999


Q ss_pred             cCCCCceeeec-CCCeEEE
Q 010287          449 TPSRPSRPLGS-LSGVVRR  466 (513)
Q Consensus       449 ~~~~~~l~~~~-~d~~i~~  466 (513)
                      +|++++|++++ .++.|.+
T Consensus       314 spdg~~l~~~~~~~~~v~v  332 (361)
T 3scy_A          314 TPNGKYLLVACRDTNVIQI  332 (361)
T ss_dssp             CTTSCEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEECCCCCEEE
Confidence            99999888776 6788887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=2.8e-19  Score=165.22  Aligned_cols=272  Identities=10%  Similarity=0.090  Sum_probs=179.1

Q ss_pred             CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCcccccccccccc-cceeEEEeecCC
Q 010287           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN  125 (513)
Q Consensus        48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~i~~i~~~~~~~  125 (513)
                      ++|++++.++.|.+||..+++..                       ..+. ++.            . .+..++|+|  +
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~~------------~~~~~~~~~s~--d   44 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-----------------------KVITIADA------------GPTPMVPMVAP--G   44 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-----------------------EEEECTTC------------TTCCCCEEECT--T
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-----------------------EEEEcCCC------------CCCccceEEcC--C
Confidence            47899999999999998765431                       1111 111            1 478899954  7


Q ss_pred             CceEE-EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCC--
Q 010287          126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG--  202 (513)
Q Consensus       126 ~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--  202 (513)
                      ++.++ ++..++.|.+||+.+++............          ....+..++++|+|+.+            +...  
T Consensus        45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~  102 (337)
T 1pby_B           45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP  102 (337)
T ss_dssp             SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence            76654 45668999999999887655443321000          00123367899999876            3332  


Q ss_pred             ----------CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeeccc
Q 010287          203 ----------GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       203 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                .++.|.+|++...+.      ...+  .....+.+++|+|++++|+++ ++.|.+||+.+++....+   
T Consensus       103 ~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~--~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~---  170 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYDAETLSR------RKAF--EAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK---  170 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEE------EEEE--ECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE---
T ss_pred             cccccccccccCceEEEEECCCCcE------EEEE--eCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee---
Confidence                      468899999865332      1111  123457789999999988887 688999999876543221   


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEe-CCC-----------------------cEEEEEcCCcccccccceeecccc
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQE  328 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~  328 (513)
                         ....+...   +.|+|++ ..++..+ .++                       .|.+||+.+++..     ...   
T Consensus       171 ---~~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~---  235 (337)
T 1pby_B          171 ---PIQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE---  235 (337)
T ss_dssp             ---CSTTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE---
T ss_pred             ---eccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee---
Confidence               11111122   2678887 4443333 233                       4688998877642     111   


Q ss_pred             CCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          329 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                             +..+...+.+++|+|++++++++ ++.|.+||+.+ ++.+..+.....                +..++|+|+
T Consensus       236 -------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~d  290 (337)
T 1pby_B          236 -------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVSTD  290 (337)
T ss_dssp             -------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECTT
T ss_pred             -------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEECCC
Confidence                   11222467889999999999988 68999999986 666665543322                238999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC
Q 010287          409 GGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +++|++++.++.|++||+.+++
T Consensus       291 g~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          291 GSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SCEEEEESBSSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCcEEEEECcCCc
Confidence            9999998999999999999873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.5e-17  Score=155.18  Aligned_cols=289  Identities=10%  Similarity=0.088  Sum_probs=170.1

Q ss_pred             ccccEEEEEEcCCCCEEEeecCC----CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      +...+..++|+|+|++|++++.+    +.|.+|++.....                   ..........+.         
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~---------   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG---------   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence            67788889999999999998875    7999999875311                   001111222222         


Q ss_pred             cccccceeEEEeecCCCceEEEee-cCCeEEEEEccCceee-eeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                         .....+++    +++++++++ .++.|.+|++...... ........                        .|.   
T Consensus       100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~------------------------~g~---  145 (361)
T 3scy_A          100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF------------------------KGS---  145 (361)
T ss_dssp             ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC------------------------CCC---
T ss_pred             ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc------------------------cCC---
Confidence               33556666    566777765 6899999999753211 11000000                        000   


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~  265 (513)
                                     .  .               ..    ...+...+.+++|+|++++++++  .++.|.+|++.....
T Consensus       146 ---------------~--~---------------~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          146 ---------------G--P---------------DK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN  189 (361)
T ss_dssp             ---------------C--S---------------CT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred             ---------------C--C---------------Cc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence                           0  0               00    01223447889999999977665  489999999875442


Q ss_pred             ----e-eeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287          266 ----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  339 (513)
Q Consensus       266 ----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (513)
                          . +................+..++|+|++ +++++++ .++.|.+||+.++....  ...+..         ...+
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~~  257 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTVN  257 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSSC
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCCC
Confidence                1 100000000112234567899999999 6665555 69999999998654311  111111         1112


Q ss_pred             cccEEEEEEeecCCEEEEEe-C--CeEEEEEccCC-CC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEE
Q 010287          340 IASISDIKFARNGRHILSRD-Y--MTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA  413 (513)
Q Consensus       340 ~~~v~~i~~sp~~~~l~~~~-~--~~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  413 (513)
                      ......++|+|||++|+++. +  +.|.+|++... ++  .+..+.. ...               +..++|+|||++|+
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l~  321 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYLL  321 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEEE
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEEE
Confidence            23568999999999887643 3  78999999631 33  2222222 111               23799999999988


Q ss_pred             EEe-CCCcEEEEecC--CCCccceee-cCCCCceeEEEEc
Q 010287          414 TGS-YSNLFRVFGCS--EGSAESTTL-EASKNPMRRQVQT  449 (513)
Q Consensus       414 ~~~-~dg~i~vwd~~--~~~~~~~~~-~~~~~~v~~~~~~  449 (513)
                      +++ .++.|.+|++.  ++. +.... ..+...+.++.|.
T Consensus       322 ~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          322 VACRDTNVIQIFERDQATGL-LTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEETTTTEEEEEEECTTTCC-EEECSCCEECSSEEEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCc-EeecceeeeCCCCeEEEEc
Confidence            887 67899997554  442 21111 1233345566653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=1.5e-18  Score=161.30  Aligned_cols=252  Identities=8%  Similarity=0.042  Sum_probs=165.4

Q ss_pred             EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      .+++++++.++++++.+++|.+||..+++..                       ..+..+.           ...+..++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~-----------~~~~~~~~   49 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------KSCVMPD-----------KFGPGTAM   49 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-----------------------EEEECSS-----------CCSSCEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEE-----------------------EEEecCC-----------CCCCceeE
Confidence            4568888999999999999999998765531                       1222111           02478899


Q ss_pred             EeecCCCceEE-EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287          120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (513)
Q Consensus       120 ~~~~~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  198 (513)
                      |+|  +++.++ +...++.|.+||+.+++..........+                                        
T Consensus        50 ~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~----------------------------------------   87 (349)
T 1jmx_B           50 MAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----------------------------------------   87 (349)
T ss_dssp             ECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred             ECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence            954  776555 4457899999999988755432211000                                        


Q ss_pred             cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC------------CeEEEEEcCCCcc
Q 010287          199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------LRINLWNLEISNQ  265 (513)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------~~i~vwd~~~~~~  265 (513)
                                                    ..+...+.+++|+|++++++++ .+            +.|.+||+.+++.
T Consensus        88 ------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           88 ------------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             ------------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             ------------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence                                          0001236678999999999887 34            9999999986432


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC--C-------------
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--P-------------  330 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~-------------  330 (513)
                      ...+      ....+...+.+++|+|++ + +++++  +.|.+||+.+++...    .+.....  +             
T Consensus       138 ~~~~------~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          138 AKPV------RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             BCCS------EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCC
T ss_pred             ccee------eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceec----cccccccCCccccCccceeeecC
Confidence            2111      111233458899999999 6 44443  349999998876422    1111100  0             


Q ss_pred             -CC-c---------------------------------------cccccccccEEEEEEee-cCCEEEEEeCCeEEEEEc
Q 010287          331 -GT-R---------------------------------------SFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDI  368 (513)
Q Consensus       331 -~~-~---------------------------------------~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd~  368 (513)
                       .. .                                       .-+..+...+..++|+| ++++++++ ++.|.+||+
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~  282 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDL  282 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEET
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEEC
Confidence             00 0                                       00001123567888999 99999988 789999999


Q ss_pred             cCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          369 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      .+ ++.+..+.....                +..++|+|++++|++++.++.|++||+.++
T Consensus       283 ~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          283 KQ-RKLIKAANLDHT----------------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             TT-TEEEEEEECSSC----------------CCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cc-CeEEEEEcCCCC----------------ccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            86 666665543322                237999999999988888999999999877

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=4.9e-18  Score=160.23  Aligned_cols=273  Identities=11%  Similarity=0.139  Sum_probs=170.1

Q ss_pred             EEEcCCCCEEEeecC-CCc--EEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287           41 IEFDKSGDHLATGDR-GGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (513)
Q Consensus        41 v~~sp~g~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  117 (513)
                      .+|||||++||.++. +|.  |.+||+.+++.                       .....++.            ..+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~   85 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG   85 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence            789999999998887 674  77778766543                       12223343            44557


Q ss_pred             EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      +.|+|  +++.|+.++.++.|++||+.+++...+.....                                         
T Consensus        86 ~~~sp--dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~-----------------------------------------  122 (388)
T 3pe7_A           86 GFLSP--DDDALFYVKDGRNLMRVDLATLEENVVYQVPA-----------------------------------------  122 (388)
T ss_dssp             CEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-----------------------------------------
T ss_pred             eEEcC--CCCEEEEEeCCCeEEEEECCCCcceeeeechh-----------------------------------------
Confidence            78954  88899999999999999999887554432211                                         


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeE--EEEeccCCCEEEEE-----------------------cC
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHIN--SISNNSDGETFISA-----------------------DD  252 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~-----------------------~d  252 (513)
                                                         ..+.  ...++++++.++..                       .+
T Consensus       123 -----------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A          123 -----------------------------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             -----------------------------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             -----------------------------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence                                               1111  11235666655531                       24


Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC------CcEEEEEcCCcccccccceeec
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      ..|.+||+.+++..         .+..+...+..+.|+| ++ +.|+.+..+      ..|.++|+..+..     +.+.
T Consensus       168 ~~l~~~d~~~g~~~---------~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~  232 (388)
T 3pe7_A          168 CRLMRVDLKTGEST---------VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVK  232 (388)
T ss_dssp             EEEEEEETTTCCEE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESC
T ss_pred             ceEEEEECCCCceE---------EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEee
Confidence            68999999876432         2334566789999999 88 777776653      3777778765432     1111


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEe--C-C---eEEEEEccCCCCCee--eeecccccccccccccccCCc
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSI  397 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~---~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  397 (513)
                      ....          ...+....|+|||+.|+..+  . .   .|++||+.+ ++...  .+..+.....           
T Consensus       233 ~~~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~-----------  290 (388)
T 3pe7_A          233 THAE----------GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS-----------  290 (388)
T ss_dssp             CCCT----------TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE-----------
T ss_pred             eCCC----------CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee-----------
Confidence            1100          02477889999999776532  2 2   399999986 44322  2221100000           


Q ss_pred             cceeeEEEeCCCCEEEEE---------eCCCcEEEEecCCCCccceeecCCCC-----------ceeEEEEcCCCCceee
Q 010287          398 FDKFECCLSGDGGRVATG---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPL  457 (513)
Q Consensus       398 ~~v~~~~~s~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~  457 (513)
                       ......|+|||+.|+..         ..+..|++||+.++..  ..+..+..           .+..++|+|+|+.|+.
T Consensus       291 -~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          291 -NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             -CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             -cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence             00134799999988753         4567899999987632  33444443           4678899999998876


Q ss_pred             ec-CCCeEEE
Q 010287          458 GS-LSGVVRR  466 (513)
Q Consensus       458 ~~-~d~~i~~  466 (513)
                      .+ .++...|
T Consensus       368 ~s~~~g~~~l  377 (388)
T 3pe7_A          368 TSDVHGKPAL  377 (388)
T ss_dssp             EECTTSSCEE
T ss_pred             EecCCCceeE
Confidence            65 3555444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=2.9e-16  Score=146.48  Aligned_cols=268  Identities=8%  Similarity=-0.026  Sum_probs=161.5

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEcc-CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                      ..+..++|+|  ++++|++++.+ .|.+|++. +++..........       +       .+..++++|+|+.+.++..
T Consensus        40 ~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g-------~~~~~~~spdg~~l~~~~~  102 (365)
T 1jof_A           40 EPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------G-------HPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             CCCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------S-------SGGGGCTTSCCEEEEEEEC
T ss_pred             CCCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------C-------CCccEEECCCCCEEEEEEe
Confidence            3578899954  78888888887 99999997 7765443221110       0       1225788999984211111


Q ss_pred             CCCCCCCcCCC----CCCceeceeecc-CCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcC-CC
Q 010287          192 CASNDSSFPPG----GVSSLRLPVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE-IS  263 (513)
Q Consensus       192 ~~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~-~~  263 (513)
                      .. ..+...+.    .++.+.+|++.. .+..   .....+...+...+.+++|+|+|++++++  .++.|++|++. ++
T Consensus       103 ~~-~~~~~~~~~~~~~~g~v~v~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          103 KQ-PPYAVYANPFYKFAGYGNVFSVSETGKLE---KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             SS-TTCCEEEEEESSSCCEEEEEEECTTCCEE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             cC-CcceeccceeecCCceEEEEccCCCCcCc---ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence            00 00000000    577899999864 2221   11111111345678999999999988876  47899999998 44


Q ss_pred             cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEcC--Cccccc--ccceeeccccCCCCcccccc
Q 010287          264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQEAPGTRSFFTE  338 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~  338 (513)
                      +.. .+..   .....|...+..++|+|++ +++++++. ++.|.+|++.  +++...  ..+..+...        +.+
T Consensus       179 ~~~-~~~~---~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~--------~~g  245 (365)
T 1jof_A          179 EVE-LVGS---VDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG--------IPD  245 (365)
T ss_dssp             CEE-EEEE---EECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT--------CCC
T ss_pred             CEE-Eeee---EecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC--------cCC
Confidence            422 1100   0111235668999999999 66666664 7899999875  343210  001111110        112


Q ss_pred             ccc------cEEEEE-EeecCCEEEEEeC--C-----eEEEEEccCCCCCeee---eecccccccccccccccCCcccee
Q 010287          339 IIA------SISDIK-FARNGRHILSRDY--M-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYENDSIFDKF  401 (513)
Q Consensus       339 ~~~------~v~~i~-~sp~~~~l~~~~~--~-----~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~  401 (513)
                      |..      .+..++ |+|||++|++++.  .     .|.+|++...++....   ...+...               ..
T Consensus       246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~---------------~~  310 (365)
T 1jof_A          246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG---------------GH  310 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---------------TT
T ss_pred             cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---------------cc
Confidence            222      588999 9999999887542  3     8999999632443321   2112111               12


Q ss_pred             eEEEeC---CCCEEEEEeC-CCcEEEEecCCC
Q 010287          402 ECCLSG---DGGRVATGSY-SNLFRVFGCSEG  429 (513)
Q Consensus       402 ~~~~s~---~~~~l~~~~~-dg~i~vwd~~~~  429 (513)
                      .++|+|   ||++|++++. ++.|.+|++...
T Consensus       311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            688999   8999998886 489999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=4.4e-17  Score=151.29  Aligned_cols=248  Identities=8%  Similarity=0.060  Sum_probs=141.2

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccc----cCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK-----  303 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~d-----  303 (513)
                      +..++|+|+++.++.+  .++.|.+||+.+++....+      .....    ...+..++|+|++ +++++++.+     
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLN  117 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECS
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEcccccccc
Confidence            5678999999876554  5899999999876544322      11110    2336789999999 777777755     


Q ss_pred             -------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCee
Q 010287          304 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA  376 (513)
Q Consensus       304 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~  376 (513)
                             +.|.+||+.+++... .+..+..+             ..+.+++|+|+|+ +++++ +.|.+||+.+ ++...
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~-------------~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~~  180 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAK-PVRTFPMP-------------RQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYTV  180 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBC-CSEEEECC-------------SSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEEE
T ss_pred             cccccCCCeEEEEECCCccccc-eeeeccCC-------------CcccceeECCCCc-EEEcc-CcEEEEeCCC-Cceec
Confidence                   899999998765321 12222221             3578899999999 55543 4599999986 66666


Q ss_pred             eeecccccccc-----cccccc----cCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287          377 TFQVHEHLRPK-----LCDLYE----NDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQ  446 (513)
Q Consensus       377 ~~~~~~~~~~~-----~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  446 (513)
                      .+.........     ...++.    .........+++++++....... ....+..++..++......+..+...+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (349)
T 1jmx_B          181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG  260 (349)
T ss_dssp             EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence            55433210000     000000    00000112456665542211000 001122244444422222233345567789


Q ss_pred             EEcC-CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          447 VQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       447 ~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      +++| ++++++++  ++.|.+.+.....   . ...+.....+.+++|+|++++|++++ ++.+.+|.
T Consensus       261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          261 LRSPKDPNQIYGV--LNRLAKYDLKQRK---L-IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             EECSSCTTEEEEE--ESEEEEEETTTTE---E-EEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EecCCCCCEEEEE--cCeEEEEECccCe---E-EEEEcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence            9999 99999888  7888883221111   1 01122345678999999998887665 67788886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=4.1e-17  Score=166.87  Aligned_cols=282  Identities=7%  Similarity=-0.022  Sum_probs=173.1

Q ss_pred             cEEEEEEcCCCCEEEeecC---------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      .|.+++|||||++||+++.         ++.|++||+.+++...                     ...+   .       
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------------------~~~l---~-------  109 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------------------GNEL---P-------  109 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------------------SSCC---C-------
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------------------ceec---C-------
Confidence            3899999999999999876         6899999987765310                     0001   1       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..+..++|+|  ||+.|+.+. |+.|++|++.+++...+..... .                             
T Consensus       110 -----~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~-----------------------------  151 (719)
T 1z68_A          110 -----RPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-E-----------------------------  151 (719)
T ss_dssp             -----SSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCB-T-----------------------------
T ss_pred             -----cccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC-c-----------------------------
Confidence                 4488899965  888888875 7899999998876543211000 0                             


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc---------CCeEEEEeccCCCEEEEE-cC-C---
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD---------YHINSISNNSDGETFISA-DD-L---  253 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~-~d-~---  253 (513)
                                       ..  +                  ..++.         ....+++|+|||+.|+++ .| +   
T Consensus       152 -----------------~~--v------------------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~  194 (719)
T 1z68_A          152 -----------------NK--I------------------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP  194 (719)
T ss_dssp             -----------------TT--E------------------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred             -----------------CC--e------------------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence                             00  0                  01221         112578888888888876 33 1   


Q ss_pred             ------------------------------eEEEEEcCCCcce--eeecccCccccccccCCeEEEEEeCCCCeEEEEEe
Q 010287          254 ------------------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS  301 (513)
Q Consensus       254 ------------------------------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  301 (513)
                                                    .|++||+.++...  ..+.  .+..+.+|...+..++|+||+ +++++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~  271 (719)
T 1z68_A          195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWL  271 (719)
T ss_dssp             EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEE
T ss_pred             eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEe
Confidence                                          7889999865431  1110  112345678889999999997 7777644


Q ss_pred             CC----CcEEEEE----cCCcccccccceeeccccCCCCccccccccccEE-----EEEEeecCCEEEE--Ee-C--CeE
Q 010287          302 SK----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-Y--MTL  363 (513)
Q Consensus       302 ~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~i~~sp~~~~l~~--~~-~--~~v  363 (513)
                      ..    ..|.+||    +.+++..    ..+...        ..+|...+.     .+.|+|||+.|+.  .. +  ..|
T Consensus       272 ~~~~~~~~l~~~d~~~~~~~g~~~----~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l  339 (719)
T 1z68_A          272 KRVQNVSVLSICDFREDWQTWDCP----KTQEHI--------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI  339 (719)
T ss_dssp             ESSTTEEEEEEEEECSSSSSEECC----GGGEEE--------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred             ccccCeEEEEEEcccCCCCCCceE----EEEecc--------cccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence            33    2488899    7666542    111100        012223444     6889999996654  32 2  367


Q ss_pred             EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----CcEEEEecCC--CCccceee
Q 010287          364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE--GSAESTTL  436 (513)
Q Consensus       364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~--~~~~~~~~  436 (513)
                      .+||+.. ++ ...+..+...               +..+.++ +++.|+..+.+     +..++|.+..  +......+
T Consensus       340 ~~~~~~~-~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l  401 (719)
T 1z68_A          340 HYIKDTV-EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV  401 (719)
T ss_dssp             EEESSCS-TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred             EEEECCC-Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence            7777664 33 3444332221               2356666 78777766554     7888998764  21111222


Q ss_pred             c----CCCCceeEEEEcCCCCceee
Q 010287          437 E----ASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       437 ~----~~~~~v~~~~~~~~~~~l~~  457 (513)
                      .    ++...+..+.|+|++++++.
T Consensus       402 ~~~~~~~~~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          402 TCHLRKERCQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             STTTTTTTBCBEEEEECGGGSSEEE
T ss_pred             cCccCCCCCceEEEEECCCCCEEEE
Confidence            2    25566778999999998774

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=4.5e-16  Score=157.59  Aligned_cols=203  Identities=9%  Similarity=0.008  Sum_probs=126.3

Q ss_pred             ccCCeEEEEeccCCCEEEEE-cC----------CeEEEEEcCCC-----cceeeecccCccccc-cccCCeEEEEEeCCC
Q 010287          231 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH  293 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~d----------~~i~vwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~  293 (513)
                      |...+.+++|+|||+.|+++ .+          ..|++||+.+.     ....        .+. .+...+..++|+|||
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG  199 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG  199 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence            34457889999999999987 44          58999999862     2221        233 445677889999999


Q ss_pred             CeEEEEEeCC--------CcEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C--
Q 010287          294 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M--  361 (513)
Q Consensus       294 ~~~l~~~~~d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~--  361 (513)
                       +.|+.++.+        ..|.+||+. ++... . ...+           ..++...+..+.|+|||+++++++. +  
T Consensus       200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~l-----------~~~~~~~~~~~~~spdg~l~~~~~~~~~~  265 (662)
T 3azo_A          200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRTL-----------LGGPEEAIAQAEWAPDGSLIVATDRTGWW  265 (662)
T ss_dssp             -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEEE-----------EEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred             -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEEe-----------CCCCCceEcceEECCCCeEEEEECCCCCe
Confidence             788777755        379999998 45210 0 1111           1122357899999999997766664 6  


Q ss_pred             eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE--ecCCCCccceeecCC
Q 010287          362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF--GCSEGSAESTTLEAS  439 (513)
Q Consensus       362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~  439 (513)
                      .|.+||+.. ++.......+.....       .....++..++|+|+++++++++. +.++||  |+.++  ....+..+
T Consensus       266 ~l~~~~~~~-~~~~~l~~~~~~~~~-------p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~~  334 (662)
T 3azo_A          266 NLHRVDPAT-GAATQLCRREEEFAG-------PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAGP  334 (662)
T ss_dssp             EEEEECTTT-CCEEESSCCSSBSSC-------CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCSS
T ss_pred             EEEEEECCC-CceeecccccccccC-------ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecCC
Confidence            666666643 443332222211100       000011337899999999999998 999999  54433  34666677


Q ss_pred             CCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287          440 KNPMRRQ-VQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       440 ~~~v~~~-~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ...+..+ .+..+.-.+++++.+....+
T Consensus       335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i  362 (662)
T 3azo_A          335 WTEWAATLTVSGTRAVGVAASPRTAYEV  362 (662)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence            7677666 44433334445555544444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=6.4e-16  Score=158.03  Aligned_cols=204  Identities=11%  Similarity=0.059  Sum_probs=122.9

Q ss_pred             EEEEeccCCCEEEEE-cC---------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          236 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      ..++|||||++|+.+ .+         +.+.+||+.+++..         .+..+...+..++|+||| +.|+.+ .++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~  133 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND  133 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence            458899999999987 43         67789999976532         345567789999999999 777776 5789


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCcccccccc---------ccEEEEEEeecCCEEEEEe-C-CeEEEE--------
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLW--------  366 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~sp~~~~l~~~~-~-~~v~iw--------  366 (513)
                      |.+||+.++....   .+..+...    ..+.++.         +....+.|||||+.|+... + +.+.+|        
T Consensus       134 i~~~~~~~~~~~~---lt~~g~~~----~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~  206 (740)
T 4a5s_A          134 IYVKIEPNLPSYR---ITWTGKED----IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE  206 (740)
T ss_dssp             EEEESSTTSCCEE---CCSCCBTT----TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred             EEEEECCCCceEE---EcCCCCcc----ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence            9999998776321   01111110    0111221         2234589999999999754 2 444444        


Q ss_pred             ---------------------------EccC---CCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287          367 ---------------------------DINM---DSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG  415 (513)
Q Consensus       367 ---------------------------d~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  415 (513)
                                                 |+..   ... ....+.....       +  ...-.-+..++|+|||+.++..
T Consensus       207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~--~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------M--LIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------H--HTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------C--CCCCeEEEEEEEeCCCeEEEEE
Confidence                                       4432   100 1111111000       0  0001114589999999976654


Q ss_pred             eC----CCcEEEEecCCCC----cc-ceee--cCCCCcee-----EEEEcCCCCcee-eec-CCCeEEE
Q 010287          416 SY----SNLFRVFGCSEGS----AE-STTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR  466 (513)
Q Consensus       416 ~~----dg~i~vwd~~~~~----~~-~~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~-~d~~i~~  466 (513)
                      ..    +..|++||+.++.    +. ...+  +.+...+.     ...|+|||+.++ ..+ .+|.-.|
T Consensus       278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l  346 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI  346 (740)
T ss_dssp             EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred             eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence            32    3479999999875    11 1222  45555544     688999999877 554 4554444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=6.7e-15  Score=132.36  Aligned_cols=272  Identities=10%  Similarity=0.163  Sum_probs=176.2

Q ss_pred             cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287           10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (513)
Q Consensus        10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (513)
                      ++.....|.+...||.+.  ...+|-..+.+++++|+|.++++...++.|.+|+.......     .+            
T Consensus         6 ~~~~~~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~-----~~------------   66 (286)
T 1q7f_A            6 SQIKRQRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-----QF------------   66 (286)
T ss_dssp             --CCCEEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-----EE------------
T ss_pred             cccccceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEE-----Ee------------
Confidence            345556677766777543  34567788999999999999898888999999996522110     00            


Q ss_pred             ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                       .......+|.            ..+..+++.+ .++.++++... ++.|++|+. +++......               
T Consensus        67 -~~~~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~---------------  116 (286)
T 1q7f_A           67 -GECGKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG---------------  116 (286)
T ss_dssp             -CCBSSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC---------------
T ss_pred             -cccCCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec---------------
Confidence             0000001222            4578888842 34545555433 889999994 443322110               


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                  ..+...+.++++++++++++
T Consensus       117 ------------------------------------------------------------~~~~~~~~~i~~~~~g~l~v  136 (286)
T 1q7f_A          117 ------------------------------------------------------------ATILQHPRGVTVDNKGRIIV  136 (286)
T ss_dssp             ------------------------------------------------------------TTTCSCEEEEEECTTSCEEE
T ss_pred             ------------------------------------------------------------CccCCCceEEEEeCCCCEEE
Confidence                                                                        11223478899999998887


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      +. .++.|.+||.. ++....+      ....+...+..++++|++ +++++...++.|++||... ..    +..+...
T Consensus       137 ~~~~~~~i~~~~~~-g~~~~~~------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~----~~~~~~~  203 (286)
T 1q7f_A          137 VECKVMRVIIFDQN-GNVLHKF------GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QY----LRQIGGE  203 (286)
T ss_dssp             EETTTTEEEEECTT-SCEEEEE------ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CE----EEEESCT
T ss_pred             EECCCCEEEEEcCC-CCEEEEe------CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CE----EEEEccC
Confidence            77 68999999965 3322211      111344568999999998 8888888899999999743 32    2222211


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                                ++...+..++++|+|+++++... + .|.+||..  ++.+..+..+....             ....+++
T Consensus       204 ----------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~  258 (286)
T 1q7f_A          204 ----------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVAL  258 (286)
T ss_dssp             ----------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEE
T ss_pred             ----------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEE
Confidence                      11246789999999998888654 4 99999964  66666665443211             0237999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCC
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +|+|+++++ +.|+.|++|++...
T Consensus       259 ~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          259 MDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCCcEEEE-CCCCeEEEEEcccc
Confidence            999987777 57899999998643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=3.1e-16  Score=147.89  Aligned_cols=230  Identities=8%  Similarity=0.055  Sum_probs=136.8

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEE--EEeCCCCeEEEEE-----------
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS-----------  300 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~-----------  300 (513)
                      +..++|+|+++.|+.+ .++.|++||+.+++... +       ...+...+...  .++|++ .+++..           
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCC
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCccccccc
Confidence            3356799999999988 68899999999765432 1       12233334333  348888 666532           


Q ss_pred             -----------eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-------C
Q 010287          301 -----------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------M  361 (513)
Q Consensus       301 -----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-------~  361 (513)
                                 ..+..|.+||+.+++.     ..+            ..+...+..+.|+| ||+.|+....       .
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGES-----TVI------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDA  216 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCE-----EEE------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred             ccchhhhhhccCCcceEEEEECCCCce-----EEe------------ecCCccccccEECCCCCCEEEEEEecCCCCCcc
Confidence                       2346789999888753     111            12225688999999 9998887543       2


Q ss_pred             eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC----cEEEEecCCCCccc-ee
Q 010287          362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN----LFRVFGCSEGSAES-TT  435 (513)
Q Consensus       362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~~~-~~  435 (513)
                      .|.++|+.  +.....+..+....             .+..+.|+|||+.|+..+. ++    .|++||+.+++... ..
T Consensus       217 ~l~~~d~~--~~~~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~  281 (388)
T 3pe7_A          217 RMWLINED--GTNMRKVKTHAEGE-------------SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS  281 (388)
T ss_dssp             SEEEEETT--SCCCEESCCCCTTE-------------EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEeCC--CCceEEeeeCCCCc-------------ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence            67777765  33333333222100             1336889999998765443 22    39999999875322 22


Q ss_pred             ecCCCCc---eeEEEEcCCCCceeee---------cCCCeEEEec--CCCCCccccCCccccccC-----------CeeE
Q 010287          436 LEASKNP---MRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLH  490 (513)
Q Consensus       436 ~~~~~~~---v~~~~~~~~~~~l~~~---------~~d~~i~~~~--~~~~~~~~~~~~~~~~~~-----------~i~~  490 (513)
                      +.++...   .....|+|+|+.|+..         ..+..|.+..  +....      ....+..           .+.+
T Consensus       282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~  355 (388)
T 3pe7_A          282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPH  355 (388)
T ss_dssp             ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCC
T ss_pred             CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------EeccccCcccccccccccCCCC
Confidence            3221100   1224799999988854         3455676622  11111      1112233           5788


Q ss_pred             EEEeCCCCEEEEEc--CCcEEEE
Q 010287          491 LAWHPSENSIACAA--SNSLYMY  511 (513)
Q Consensus       491 ~~~sp~~~~la~~~--~~~~~i~  511 (513)
                      ++|+|||+.|+.++  ++...||
T Consensus       356 ~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          356 PSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccCCCCCCEEEEEecCCCceeEE
Confidence            99999999998665  3444444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=7.9e-16  Score=145.50  Aligned_cols=293  Identities=10%  Similarity=0.065  Sum_probs=177.3

Q ss_pred             ccccEEEEEEcCCCCEEEeecCC---CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      |...+.+++|||||++||.....   ..|.+|++.+++.                        ..+..+..         
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~---------   80 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG---------   80 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC---------
T ss_pred             cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC---------
Confidence            33447888999999998876543   3677888765542                        11111210         


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        .....+.|+  ++++.|+.++.++.|++|++.+++...+.....                     .++++|+.+    
T Consensus        81 --~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------~~~~~g~~l----  131 (396)
T 3c5m_A           81 --DNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------------------EWKGYGTWV----  131 (396)
T ss_dssp             --BCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------------------TEEEEEEEE----
T ss_pred             --CccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------------------ccCCCCCEE----
Confidence              223447895  488899999999999999999887655433221                     134444433    


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE------cCCeEEEEEcCCCc
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEISN  264 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~------~d~~i~vwd~~~~~  264 (513)
                              +.........+|                        ...+.|+|+++.++..      .+..|++||+.+++
T Consensus       132 --------~~~~~~~~~~~~------------------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          132 --------ANSDCTKLVGIE------------------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             --------ECTTSSEEEEEE------------------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             --------EeccCCcccccc------------------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence                    111111111110                        0124578888877653      35689999998654


Q ss_pred             ceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC------CcEEEEEcCCcccccccceeeccccCCCCccccc
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  337 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (513)
                      ..         .+..+...+..+.|+| ++ ..|+..+.+      ..|.+||+..+..     ..+....         
T Consensus       180 ~~---------~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~---------  235 (396)
T 3c5m_A          180 LE---------VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHA---------  235 (396)
T ss_dssp             EE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCC---------
T ss_pred             EE---------eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccC---------
Confidence            32         1234566789999999 66 666665543      3588888765432     1111100         


Q ss_pred             cccccEEEEEEeecCCEEEEEe-C-----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCC
Q 010287          338 EIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGG  410 (513)
Q Consensus       338 ~~~~~v~~i~~sp~~~~l~~~~-~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~  410 (513)
                       ....+..+.|+|+|+.|+..+ +     +.|++||+.+ ++... +.....                . .+.|+| ||+
T Consensus       236 -~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~----------------~-~~~~s~~dg~  295 (396)
T 3c5m_A          236 -EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP----------------C-SHLMSNFDGS  295 (396)
T ss_dssp             -TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS----------------E-EEEEECSSSS
T ss_pred             -CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC----------------C-CCCccCCCCc
Confidence             013578899999999877642 2     3399999875 44322 211111                1 268999 999


Q ss_pred             EEEEEe----------------CCCcEEEEecCCCCccceeecCCCC-----------ceeEEEEcCCCCceeeecC-CC
Q 010287          411 RVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-SG  462 (513)
Q Consensus       411 ~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-d~  462 (513)
                      ++++++                .+..|++||+.++..  ..+..+..           .+....|+|+++.|+..+. ++
T Consensus       296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~  373 (396)
T 3c5m_A          296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG  373 (396)
T ss_dssp             EEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred             eEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence            888754                347899999987643  23333333           2556789999998877654 44


Q ss_pred             eEEE
Q 010287          463 VVRR  466 (513)
Q Consensus       463 ~i~~  466 (513)
                      ...+
T Consensus       374 ~~~l  377 (396)
T 3c5m_A          374 VPAI  377 (396)
T ss_dssp             SCEE
T ss_pred             CceE
Confidence            4444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=1.6e-14  Score=133.91  Aligned_cols=230  Identities=10%  Similarity=0.005  Sum_probs=139.5

Q ss_pred             eEEEEeccCCCEEEEE--c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ...++++|+|++|+++  . +++|.+||+.+.+....++       . .. ....+.+.|++...+++.+.||.+.+|++
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i-------~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~  180 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT-------A-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL  180 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG-------G-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe-------c-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence            5568999999999987  3 6899999999765432201       1 11 12335677877678888999999999998


Q ss_pred             CC-cccccccc---eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe--eeeeccccc
Q 010287          312 RQ-SALCDTHS---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHL  384 (513)
Q Consensus       312 ~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~~~~~~  384 (513)
                      .. ++.... .   ..++..            ..+ ..+.++|++..++..+. +.|.++|+.. ....  ..+......
T Consensus       181 ~~~g~~~~~-~~~~~~~~~~------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          181 GEDGKVASQ-SRSKQMFSVK------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSG-DEVKVDGPWSLLNDE  245 (361)
T ss_dssp             CTTSSEEEE-EECCCCSCTT------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSS-SSCEEEEEEESCCHH
T ss_pred             CCCCcEeee-ccccceEcCC------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecC-CCceecccccccCcc
Confidence            65 332100 0   111111            111 12334677776666554 8999999874 2211  111110000


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeC-----------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP  453 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  453 (513)
                      .. .....    ......++|+|+++.++++..           ++.|.+||+.++ +....+..+.  ...++++|+++
T Consensus       246 ~~-~~~~~----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          246 DK-AKNWV----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRN  317 (361)
T ss_dssp             HH-HTTCE----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTT
T ss_pred             cc-ccccc----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCC
Confidence            00 00000    000113789999888776543           358999999987 4556676666  88999999999


Q ss_pred             ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          454 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       454 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                      +|++++. +.|.+++..... .+.......+......++++|+|+
T Consensus       318 ~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          318 LMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence            9988886 889883222110 011122234567889999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=3.3e-13  Score=131.54  Aligned_cols=324  Identities=11%  Similarity=0.035  Sum_probs=202.9

Q ss_pred             cCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeec
Q 010287           44 DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS  123 (513)
Q Consensus        44 sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~  123 (513)
                      +|.+.++++...+++|.++|..+++.+                       ..+..             ...+..+.|+  
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~-------------g~~p~~v~~S--  205 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDT-------------GYAVHISRLS--  205 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEEC-------------SSCEEEEEEC--
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeC-------------CCCccceEEC--
Confidence            344567777788999999998776531                       11211             1346788994  


Q ss_pred             CCCceEEEeecCCeEEEEEcc--CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCC
Q 010287          124 ANSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP  201 (513)
Q Consensus       124 ~~~~~l~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  201 (513)
                      ++++++++++.|+.|.+||+.  +++......                                                
T Consensus       206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------  237 (567)
T 1qks_A          206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------  237 (567)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEE------------------------------------------------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe------------------------------------------------
Confidence            588899999999999999995  443322110                                                


Q ss_pred             CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec----cCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc
Q 010287          202 GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       202 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                 .+  .....++|+    |+|++++++  .+++|.++|..+.+.... +.....
T Consensus       238 ---------------------------~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~~  287 (567)
T 1qks_A          238 ---------------------------IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRGM  287 (567)
T ss_dssp             ---------------------------CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCEE
T ss_pred             ---------------------------cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-Eecccc
Confidence                                       01  125689999    699999987  489999999887654432 211110


Q ss_pred             ccc---cccC-CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          276 NME---DLTE-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       276 ~~~---~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                      ...   .|.. .+..+..+++++.+++.....|.|.++|........  +..+..             ......+.|+|+
T Consensus       288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~pd  352 (567)
T 1qks_A          288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDGS  352 (567)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECTT
T ss_pred             ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECCC
Confidence            011   1222 678899999886778888888999999987643210  111111             134678899999


Q ss_pred             CCEEEEEe-C-CeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEE-EeCCCC-EEEEEe-CCCcEEEEe
Q 010287          352 GRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGG-RVATGS-YSNLFRVFG  425 (513)
Q Consensus       352 ~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~-~l~~~~-~dg~i~vwd  425 (513)
                      +++++++. . +.|.++|+.+ ++.+..+.. ...+..             -.... ++|++. .++++. .++.|.++|
T Consensus       353 gr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php-------------g~g~~~~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP-------------GRGANFVHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC-------------TTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC-------------ccceeeECCCCCcEEEeCCCCCCeEEEec
Confidence            99988765 3 9999999996 666655543 211100             00223 578754 444543 468999999


Q ss_pred             cCCCC------ccceeecCCCCceeEEEEcCCCCceeeecC-------CCeEEEecCCCC-----Cc-cccCC-----cc
Q 010287          426 CSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SA-LDANG-----NA  481 (513)
Q Consensus       426 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~~~~~~~~-----~~-~~~~~-----~~  481 (513)
                      ..+.+      +...+++.....-..+..+|++++|.....       ...|.+++....     .. .+...     ..
T Consensus       419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~  498 (567)
T 1qks_A          419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI  498 (567)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred             CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence            98732      233555544333345778999998877552       346776333222     10 00100     00


Q ss_pred             ccccCCeeEEEEeCCCCEEEEE--c----CCcEEEEe
Q 010287          482 FDFSMKLLHLAWHPSENSIACA--A----SNSLYMYY  512 (513)
Q Consensus       482 ~~~~~~i~~~~~sp~~~~la~~--~----~~~~~i~~  512 (513)
                      -+-...+.++.|+|+|+.+.++  +    ++.+.|+.
T Consensus       499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            0124679999999999987755  2    57777765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=8.5e-15  Score=136.54  Aligned_cols=251  Identities=11%  Similarity=0.018  Sum_probs=151.5

Q ss_pred             ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeec-cCCcccccceeeEeeccccCCeEEEEeccCCCE--EEEE
Q 010287          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVT-SQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISA  250 (513)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~  250 (513)
                      +..++++|+|+.+            ++.+.+ .+.+|++. ..+...    ... ...+ +.+.+++|+|++++  ++++
T Consensus        42 ~~~~a~spdg~~l------------~~~~~~-~v~~~~~~~~g~~~~----~~~-~~~~-g~~~~~~~spdg~~l~~~~~  102 (365)
T 1jof_A           42 ISWMTFDHERKNI------------YGAAMK-KWSSFAVKSPTEIVH----EAS-HPIG-GHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             CSEEEECTTSSEE------------EEEEBT-EEEEEEEEETTEEEE----EEE-EECC-SSGGGGCTTSCCEEEEEEEC
T ss_pred             CcEEEECCCCCEE------------EEEccc-eEEEEEECCCCCEEE----eeE-eecC-CCCccEEECCCCCEEEEEEe
Confidence            3467899999976            444444 89999986 332210    000 0111 23556889999995  4343


Q ss_pred             --------------cCCeEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEcC-C
Q 010287          251 --------------DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMR-Q  313 (513)
Q Consensus       251 --------------~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~~-~  313 (513)
                                    .++.+.+|++.........+.    .+ ..+...+.+++|+|++ ++++++. .++.|.+||+. +
T Consensus       103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~  177 (365)
T 1jof_A          103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ----NYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE----EEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred             cCCcceeccceeecCCceEEEEccCCCCcCcceEe----eEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCC
Confidence                          478999999974332222110    00 1245678999999999 6666655 47899999997 5


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCC-CCCe---eeeecccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD-SGPV---ATFQVHEHLRPK  387 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~~~~---~~~~~~~~~~~~  387 (513)
                      ++...  ...+...          .|...+..++|+|+|+++++++.  +.|.+|++... ++..   ..+........ 
T Consensus       178 g~~~~--~~~~~~~----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~-  244 (365)
T 1jof_A          178 GEVEL--VGSVDAP----------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP-  244 (365)
T ss_dssp             SCEEE--EEEEECS----------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-
T ss_pred             CCEEE--eeeEecC----------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC-
Confidence            55311  1111110          11245889999999999887653  89999987631 3321   11111000000 


Q ss_pred             cccccccC---CccceeeEE-EeCCCCEEEEEeCC-C-----cEEEEecC-CCCccce---eecCCCCceeEEEEcC---
Q 010287          388 LCDLYEND---SIFDKFECC-LSGDGGRVATGSYS-N-----LFRVFGCS-EGSAEST---TLEASKNPMRRQVQTP---  450 (513)
Q Consensus       388 ~~~~~~~~---~~~~v~~~~-~s~~~~~l~~~~~d-g-----~i~vwd~~-~~~~~~~---~~~~~~~~v~~~~~~~---  450 (513)
                          .+..   ....+..++ |+|||++|++++.+ +     .|.+|++. ++ ....   ....+......++++|   
T Consensus       245 ----g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          245 ----DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             ----CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             ----CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC-CEEEeeeeeecCCCCcccceecCCCc
Confidence                0000   000134799 99999998876543 2     89999996 44 3322   1333444566889999   


Q ss_pred             CCCceeeecCC-CeEEE
Q 010287          451 SRPSRPLGSLS-GVVRR  466 (513)
Q Consensus       451 ~~~~l~~~~~d-~~i~~  466 (513)
                      ++++|++++.+ +.|++
T Consensus       320 dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             CTTEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEcCCCeEEE
Confidence            89999988764 88888

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=2.2e-14  Score=132.01  Aligned_cols=276  Identities=12%  Similarity=0.102  Sum_probs=175.8

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..|.+++|++++..++..+.++.++.|.-.  .                        ...+..+.            ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------~~~~~~~~------------~~~   47 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE--P------------------------WLEISKKG------------LQL   47 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--E------------------------EEEEESSC------------CCE
T ss_pred             cccceeeecCCccceeEEeecccCcccccc--e------------------------eEEEeccC------------ccc
Confidence            457888999998877777778888888321  1                        12233343            457


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      .+++|.  +++.+++++..++.|.+||..+++.....                                           
T Consensus        48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------------------------   82 (333)
T 2dg1_A           48 EGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------------------------------   82 (333)
T ss_dssp             EEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred             cCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence            889994  57777777888999999999877643321                                           


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC----CeEEEEEcCCCcceeeec
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNIV  270 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d----~~i~vwd~~~~~~~~~~~  270 (513)
                                                       ..+...+.+++++++++++++. .+    +.|.+||.+++... .+.
T Consensus        83 ---------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~  128 (333)
T 2dg1_A           83 ---------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DII  128 (333)
T ss_dssp             ---------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEE
T ss_pred             ---------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEE
Confidence                                             1122458899999999988877 45    68999998865432 111


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeC------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                           ........+.+++++|++ +++++...      .+.|..+|..+++.     ..+..            ....+.
T Consensus       129 -----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~------------~~~~~~  185 (333)
T 2dg1_A          129 -----EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ------------NISVAN  185 (333)
T ss_dssp             -----CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE------------EESSEE
T ss_pred             -----ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-----EEeec------------CCCccc
Confidence                 001234578999999998 77766553      24555666544332     11111            113478


Q ss_pred             EEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287          345 DIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR  422 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  422 (513)
                      .++|+|+++.|+.++ . +.|.+||+...+..+..+......     .+.  . ......++++++|+++++...++.|.
T Consensus       186 ~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~v~  257 (333)
T 2dg1_A          186 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGRVL  257 (333)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCEEE
Confidence            899999998766543 3 899999996434433322100000     000  0 00123789999999888877889999


Q ss_pred             EEecCCCCccceeecCCCC------ceeEEEEcCCCCceeeecCC
Q 010287          423 VFGCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGSLS  461 (513)
Q Consensus       423 vwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~d  461 (513)
                      +||.. + .....+..+..      .+..++++|+++.|..++.+
T Consensus       258 ~~d~~-g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          258 VFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCC-C-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            99985 3 33334433322      57889999998777655544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=5e-14  Score=129.22  Aligned_cols=260  Identities=10%  Similarity=0.089  Sum_probs=165.4

Q ss_pred             ccEEEEEEcCCCCEEEeecCC------------------------CcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287           36 DIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (513)
                      ..|.+|+++|+|+++++...+                        ++|.+||..+++.                      
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------   81 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------------------   81 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence            679999999999999988877                        3677777654442                      


Q ss_pred             Eecccc-CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCccc
Q 010287           92 YKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        92 ~~~~~~-~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                       ...+. ++-            .....+++.  +++.++++...++.|++|+..... ..........+           
T Consensus        82 -~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----------  135 (329)
T 3fvz_A           82 -LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----------  135 (329)
T ss_dssp             -EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred             -EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence             11111 222            457889994  577788887888999999976542 11111000000           


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFI  248 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  248 (513)
                                   |                  .                         ..++......++++| ++.+++
T Consensus       136 -------------g------------------~-------------------------~~~~~~~P~~ia~~~~~g~lyv  159 (329)
T 3fvz_A          136 -------------G------------------S-------------------------DQNHFCQPTDVAVEPSTGAVFV  159 (329)
T ss_dssp             -------------C------------------C-------------------------STTCCSSEEEEEECTTTCCEEE
T ss_pred             -------------C------------------C-------------------------CccccCCCcEEEEeCCCCeEEE
Confidence                         0                  0                         012234578999999 788888


Q ss_pred             EE--cCCeEEEEEcCCCcceeeecccCc--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287          249 SA--DDLRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  324 (513)
Q Consensus       249 s~--~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  324 (513)
                      +.  .++.|++|+.. +.....+-....  ....++...+..++++|++..++++...++.|++||..+++.    +..+
T Consensus       160 ~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~----~~~~  234 (329)
T 3fvz_A          160 SDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF----VREI  234 (329)
T ss_dssp             EECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEE
T ss_pred             EeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE----EEEE
Confidence            76  38999999954 433222100000  000123345899999998338888888999999999986765    3333


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEE-------EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCC
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILS-------RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS  396 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-------~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (513)
                      ...          .+...+..++++| +..+++       ... ..|++||..+ ++.+..+......            
T Consensus       235 ~~~----------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------  290 (329)
T 3fvz_A          235 KHA----------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------  290 (329)
T ss_dssp             CCT----------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------
T ss_pred             ecc----------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------
Confidence            221          1224678889998 333332       222 5899999886 7777665321110            


Q ss_pred             ccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      ......++++|+|.++++...++.|++|++..
T Consensus       291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            11134899999998888888899999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=2e-13  Score=122.70  Aligned_cols=242  Identities=10%  Similarity=0.116  Sum_probs=161.0

Q ss_pred             cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeC-CCcE
Q 010287          230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGSI  306 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~-dg~i  306 (513)
                      ++-..+.+++++++++++++. .++.|.+||.. ++....+. . .....++...+..+++. +++ +++++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~-~-~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG-E-CGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC-C-BSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec-c-cCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence            444668899999999988887 68999999987 33322211 0 00112345678999995 666 77666643 8999


Q ss_pred             EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      .+|| .++..    ...+...           +...+.+++++|+|+++++... +.|.+||..  ++.+..+...... 
T Consensus       103 ~~~d-~~g~~----~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~-  163 (286)
T 1q7f_A          103 QIYN-QYGQF----VRKFGAT-----------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHL-  163 (286)
T ss_dssp             EEEC-TTSCE----EEEECTT-----------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTC-
T ss_pred             EEEC-CCCcE----EEEecCc-----------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCcc-
Confidence            9999 45543    2222211           1245789999999997777654 899999965  5555544321110 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCC-
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG-  462 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-  462 (513)
                                  .....++++|+|+++++...++.|++||...  .....+..  +......++++++++++++...++ 
T Consensus       164 ------------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          164 ------------EFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             ------------SSEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             ------------CCcEEEEECCCCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence                        0134899999999888888889999999753  23334433  235678999999999888887775 


Q ss_pred             eEEEecCCCCCccccCCcccc--ccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          463 VVRRVKGADNSALDANGNAFD--FSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       463 ~i~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .|.+......    .......  ....+..++++|+++++++..++.+.+|.
T Consensus       230 ~i~~~~~~g~----~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~  277 (286)
T 1q7f_A          230 NLTIFTQDGQ----LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYR  277 (286)
T ss_dssp             EEEEECTTSC----EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             EEEEECCCCC----EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence            8888321110    0001111  12347899999999988887788899985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=2.2e-14  Score=145.21  Aligned_cols=184  Identities=10%  Similarity=0.080  Sum_probs=120.7

Q ss_pred             ccCCCE-EEEEc--CCeEEEEEcC--CCcceeeecccCcccccc-----ccCCeEEEEEeCCCCeEEEEEeCC-------
Q 010287          241 NSDGET-FISAD--DLRINLWNLE--ISNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK-------  303 (513)
Q Consensus       241 ~~~~~~-l~s~~--d~~i~vwd~~--~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d-------  303 (513)
                      |||++. |+.+.  +..|.++++.  ......        .+..     |...+..++|+||+ +.|++++.+       
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence            499998 77763  5667677665  202222        2222     56678899999999 788888776       


Q ss_pred             ---CcEEEEEcCC------cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C--------CeEEE
Q 010287          304 ---GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKL  365 (513)
Q Consensus       304 ---g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~--------~~v~i  365 (513)
                         ..|.+||+.+      +..     ..+..           .+...+..++|||||++|+..+ +        ..|++
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~-----------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAV-----RELSD-----------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGS-----EESSC-----------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred             CceeEEEEEECCCCccccCCce-----eEEEe-----------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence               5899999877      432     11110           1224677889999999998654 3        37999


Q ss_pred             EEccCCCC--Ceeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC--cEEEEecCCCCccceeecCCC
Q 010287          366 WDINMDSG--PVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEASK  440 (513)
Q Consensus       366 wd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~  440 (513)
                      ||+...+.  ....+. .+...               +..+.|+|||+++++++.++  .|++||+.++. .......+.
T Consensus       222 ~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~  285 (662)
T 3azo_A          222 ARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREE  285 (662)
T ss_dssp             EEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSS
T ss_pred             EEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccc
Confidence            99983141  222332 22222               34789999999888888888  56666765552 222222222


Q ss_pred             Cc--------eeEEEEcCCCCceeeecCCCeEEE
Q 010287          441 NP--------MRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       441 ~~--------v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ..        +..++++++++++++++. +.++|
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            21        457889999999999988 88888

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=1.4e-13  Score=126.27  Aligned_cols=235  Identities=9%  Similarity=0.042  Sum_probs=147.0

Q ss_pred             CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc--Ccccccc
Q 010287          203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMED  279 (513)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~  279 (513)
                      .++.|.+||......      ...+..++-.....++++++++++++. .++.|++|+..........+..  .+..-..
T Consensus        67 ~~~~i~~~d~~~g~~------~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~  140 (329)
T 3fvz_A           67 EEDTILVIDPNNAEI------LQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN  140 (329)
T ss_dssp             CSCCEEEECTTTCCE------EEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred             cCCcEEEEECCCCeE------EeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence            345566666543332      111122344568899999999988777 6899999998643212221100  0000023


Q ss_pred             ccCCeEEEEEeC-CCCeEEEEEe-CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEE
Q 010287          280 LTEVITSAEFHP-THCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHIL  356 (513)
Q Consensus       280 ~~~~i~~~~~~~-~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~  356 (513)
                      +...+..++++| ++ .++++.+ .++.|++|| .++..    +..+.......  ....++......++++|+ +.+++
T Consensus       141 ~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~~----~~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGKF----VTQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             CCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSCE----EEEECEECCSS--SCCTTEESCEEEEEEETTTTEEEE
T ss_pred             ccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCCE----EEEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEE
Confidence            445789999999 66 8888876 699999999 44543    22232111000  000112245889999998 55555


Q ss_pred             EEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC------CCCEEEEEeCCCcEEEEecCCC
Q 010287          357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +... +.|++||..+ ++.+..+.......             .+..++|+|      +++..++...+..|++|++.++
T Consensus       213 ~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          213 ADRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             EETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             EECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence            5544 8999999985 77777664332111             133778888      4443333444568999999887


Q ss_pred             Cccceee---cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 SAESTTL---EASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + ....+   ..+......++++|+|.++++...++.|++
T Consensus       279 ~-~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~  317 (329)
T 3fvz_A          279 E-IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK  317 (329)
T ss_dssp             C-EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred             e-EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence            3 43444   356677889999999988888888888887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=1.9e-13  Score=126.80  Aligned_cols=278  Identities=10%  Similarity=0.045  Sum_probs=163.9

Q ss_pred             EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .++|+|||++++++.          .++.|.+||..+.+.+                       ..+......      .
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~-----------------------~~i~~~~~~------~  104 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE-----------------------KEISLPPKR------V  104 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE-----------------------EEEEECTTB------C
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE-----------------------EEEEcCccc------c
Confidence            899999999998876          3567999997654431                       111100000      0


Q ss_pred             cccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeee-eccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      ........+++  ++++++|+++..  +++|.+||+.+++.... ....                               
T Consensus       105 ~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------------------------------  151 (361)
T 2oiz_A          105 QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------------------------------  151 (361)
T ss_dssp             CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------------------------------
T ss_pred             ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------------------------------
Confidence            00034678899  458889998864  68999999998865432 1110                               


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~  264 (513)
                                                                     ....+.+.|++ ..+++. .||.+.+|++....
T Consensus       152 -----------------------------------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          152 -----------------------------------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             -----------------------------------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             -----------------------------------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence                                                           01123345544 344443 67777777776433


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccc-ccccE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASI  343 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  343 (513)
                      ........ ...+.....++ .+.++|++ ..++..+.++.+.++|+.......  ...+......   ....+ .....
T Consensus       185 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~---~~~~~~~p~g~  256 (361)
T 2oiz_A          185 KVASQSRS-KQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE---DKAKNWVPGGY  256 (361)
T ss_dssp             SEEEEEEC-CCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH---HHHTTCEECCS
T ss_pred             cEeeeccc-cceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc---ccccccccCCe
Confidence            22211000 00111112221 23335666 566667789999999987543210  1111100000   00000 00112


Q ss_pred             EEEEEeecCCEEEEE-e-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          344 SDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~-~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      ..++|+|++..++++ .           ...|.+||+.+ .+.+.++..+. .                ..++|+|||++
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~  318 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNL  318 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTE
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCE
Confidence            236899998877764 2           14899999997 78888877665 2                28999999999


Q ss_pred             EEEEeCCCcEEEEecCCCC-ccceeecCCCCceeEEEEcCCCC
Q 010287          412 VATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRP  453 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  453 (513)
                      |++++. +.|.+||..++. +....+.........++++|+|+
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            998887 999999999872 22245555666677899999975

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=2.3e-13  Score=122.85  Aligned_cols=241  Identities=8%  Similarity=0.009  Sum_probs=160.1

Q ss_pred             cccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      .+.....+++|+|+|+ +++++..++.|..|+..++ .                        ..+..+.           
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~-----------   68 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS-----------   68 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence            3456788999999998 7888888999999997654 2                        1222333           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       ..+.++++.  +++.++++...++.|.+||..+++.........                                   
T Consensus        69 -~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----------------------------------  110 (296)
T 3e5z_A           69 -HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSFE-----------------------------------  110 (296)
T ss_dssp             -SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred             -CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence             558899994  477777666667899999997776543211000                                   


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE----Ec--------------CC
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD--------------DL  253 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~--------------d~  253 (513)
                                                           ......+..++++|+|+++++    |.              .+
T Consensus       111 -------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A          111 -------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             -------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             -------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence                                                 000123567889999998886    21              23


Q ss_pred             eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC-Cccc-ccccceeeccccCCC
Q 010287          254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAPG  331 (513)
Q Consensus       254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~  331 (513)
                      .|..++..  ....        .+..+......++|+|++ +.+++.+.++.|.+||+. ++.. ..  ...+..     
T Consensus       154 ~l~~~~~~--g~~~--------~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~-----  215 (296)
T 3e5z_A          154 WVFRLAPD--GTLS--------APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV-----  215 (296)
T ss_dssp             EEEEECTT--SCEE--------EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC-----
T ss_pred             EEEEECCC--CCEE--------EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC-----
Confidence            55555544  2221        123345567899999999 666777788999999986 3332 11  112211     


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE-eCCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDGG  410 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~  410 (513)
                             +...+..++++++|+++++. ++.|.+||..  ++.+..+..+.. .               ++++| +|+++
T Consensus       216 -------~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~  269 (296)
T 3e5z_A          216 -------EPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGR  269 (296)
T ss_dssp             -------SSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSC
T ss_pred             -------CCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCC
Confidence                   11346679999999977777 7899999986  666666655543 1               27889 58999


Q ss_pred             EEEEEeCCCcEEEEecCCC
Q 010287          411 RVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       411 ~l~~~~~dg~i~vwd~~~~  429 (513)
                      .|++++.++ +.-+++++.
T Consensus       270 ~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          270 TLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EEEEEETTE-EEEEECSCC
T ss_pred             EEEEEcCCe-EEEEEcccc
Confidence            998888764 444555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=6.9e-12  Score=113.28  Aligned_cols=277  Identities=7%  Similarity=-0.006  Sum_probs=180.0

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      +...+.+++++++|.+.++...++.|.+|+.. ++..                     . ..+..+.            .
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~   57 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A   57 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence            34689999999999988877768899999965 3210                     0 0111122            4


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      .+.++++  ++++.++++...++.|..|+.. ++.... ..                                       
T Consensus        58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~---------------------------------------   94 (299)
T 2z2n_A           58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL---------------------------------------   94 (299)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC---------------------------------------
T ss_pred             ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC---------------------------------------
Confidence            5888888  4577677766668889999875 322111 00                                       


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                         ......+.++++.++++++++. .++.|..||. ++... ..   
T Consensus        95 -----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~---  134 (299)
T 2z2n_A           95 -----------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY---  134 (299)
T ss_dssp             -----------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE---
T ss_pred             -----------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee---
Confidence                                               0111347789999999888877 5889999998 33322 11   


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         ........+..+++.+++ +++++...++.|..||. +++..     .+...          .....+.++++++++
T Consensus       135 ---~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~g  194 (299)
T 2z2n_A          135 ---ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIP----------TPASGPVGITKGNDD  194 (299)
T ss_dssp             ---ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTS
T ss_pred             ---cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCC----------CCCCcceeEEECCCC
Confidence               112234568999999998 77777777889999998 55431     11111          111457889999999


Q ss_pred             CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                      .+.++... +.|.+||. . +... .+.....             ...+..++++++|+++++...++.|..||.. +..
T Consensus       195 ~l~v~~~~~~~i~~~~~-~-g~~~-~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~  257 (299)
T 2z2n_A          195 ALWFVEIIGNKIGRITT-S-GEIT-EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII  257 (299)
T ss_dssp             SEEEEETTTTEEEEECT-T-CCEE-EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE
T ss_pred             CEEEEccCCceEEEECC-C-CcEE-EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECCC-Cce
Confidence            87776654 89999998 4 4422 2221110             0113489999999977766677899999983 422


Q ss_pred             cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ....+..+...+..+++ +++.+.++...++.+++
T Consensus       258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          258 EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred             EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence            22223344566888888 88887777665666665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=4.8e-13  Score=120.81  Aligned_cols=236  Identities=9%  Similarity=0.019  Sum_probs=152.5

Q ss_pred             cccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          230 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .+.....+++|+|+++ +++++ .++.|..|+..++  . .       .+..+...+.+++++|++ +++++...++.|.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~   93 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE   93 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence            4445578999999998 66666 6899999999865  2 2       223355678999999998 7777777779999


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE----Ee-----------C-CeEEEEEccCC
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINMD  371 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~----~~-----------~-~~v~iwd~~~~  371 (513)
                      +||..+++..    .......        ......+..++++|+|+++++    |.           + +.-.||.+...
T Consensus        94 ~~d~~~g~~~----~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           94 RQREPGGEWE----SIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             EECSTTCCEE----EEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             EEcCCCCcEE----EEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence            9998777631    1111100        001134678999999998887    32           0 11244444432


Q ss_pred             CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC-CCCcc---ceeecCCCCceeEEE
Q 010287          372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAE---STTLEASKNPMRRQV  447 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~---~~~~~~~~~~v~~~~  447 (513)
                      + .+..+..+...               ...++|+|+++.|++.+.++.|++|++. ++ ..   ...+..+...+..++
T Consensus       162 g-~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          162 G-TLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARG-ETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             S-CEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSS-CEEEEEEEECCSSSCCCSEE
T ss_pred             C-CEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCC-cCcCCCeEeeCCCCCCCeEE
Confidence            2 23333222111               2379999999998777788999999987 33 22   122233445567899


Q ss_pred             EcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE-eCCCCEEEEEcCCcEEEEe
Q 010287          448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY  512 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-sp~~~~la~~~~~~~~i~~  512 (513)
                      +.++|+++++.  ++.|.+...   .+ +.......+.. +++++| +|+++.|.+++.++++.+.
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~~---~g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLTP---DG-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEECT---TS-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             ECCCCCEEEEc--CCeEEEECC---CC-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            99999977766  666666221   11 11111112234 899999 5899999998888877664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=3.2e-14  Score=134.44  Aligned_cols=218  Identities=12%  Similarity=0.072  Sum_probs=127.8

Q ss_pred             EEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEE-------------------EEEeCCCCeEE
Q 010287          238 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-------------------AEFHPTHCNML  297 (513)
Q Consensus       238 ~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l  297 (513)
                      +.|+|+++.|+.+ .++.|++||+.+++.. .+.       ..+......                   +.|+|++ +.+
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~~~-------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~  156 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-VIY-------TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWE  156 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEE-EEE-------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcE-EEE-------ecccccCCCCCEEEeccCCccccccccccccCCCC-cce
Confidence            6789999999877 6778999999865432 211       111111111                   3456666 444


Q ss_pred             EEE-----eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-------CeEE
Q 010287          298 AYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTLK  364 (513)
Q Consensus       298 ~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-------~~v~  364 (513)
                      +..     ..+..|.+||+.+++..    ...             .+...+..+.|+| ++..|+..++       ..|.
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~----~~~-------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELE----VIH-------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW  219 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEE----EEE-------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred             eeeeeccCCCcceEEEEECCCCcEE----eec-------------cCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence            433     35668899998876531    111             1225688999999 8887766432       2578


Q ss_pred             EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----CcEEEEecCCCCccceeecCC
Q 010287          365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~  439 (513)
                      +||+.. +. ...+..+...             ..+..+.|+|||++|+..+.+     +.|++||+.++.... .....
T Consensus       220 ~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~  283 (396)
T 3c5m_A          220 LVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP  283 (396)
T ss_dssp             EEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC
T ss_pred             EEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC
Confidence            888763 33 2222222100             013478999999988766543     449999998774322 11111


Q ss_pred             CCceeEEEEcC-CCCceeeec----------------CCCeEEEecCCCCCccccCCccccccC-----------CeeEE
Q 010287          440 KNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVKGADNSALDANGNAFDFSM-----------KLLHL  491 (513)
Q Consensus       440 ~~~v~~~~~~~-~~~~l~~~~----------------~d~~i~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~  491 (513)
                        ... ..|+| +++++++++                .+..|.+.......    ......+..           .+..+
T Consensus       284 --~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~  356 (396)
T 3c5m_A          284 --PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS----AQKLCKHSTSWDVLDGDRQITHPHP  356 (396)
T ss_dssp             --SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB----CCEEEECCCCCCCBTTBSSTTCCCC
T ss_pred             --CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc----eEEccCCCCccccccccccCCCCCc
Confidence              122 88999 999888754                23566662211100    011112222           25678


Q ss_pred             EEeCCCCEEEEEc
Q 010287          492 AWHPSENSIACAA  504 (513)
Q Consensus       492 ~~sp~~~~la~~~  504 (513)
                      +|+||++.|+.++
T Consensus       357 ~~s~dg~~l~~~s  369 (396)
T 3c5m_A          357 SFTPNDDGVLFTS  369 (396)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             eEccCCCeEEEEe
Confidence            9999999988665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=3.3e-12  Score=117.43  Aligned_cols=237  Identities=11%  Similarity=0.040  Sum_probs=147.5

Q ss_pred             ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC----
Q 010287          229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----  303 (513)
Q Consensus       229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----  303 (513)
                      ..+...+.+++|++++++++++ .++.|.+||..+++.. .+       ...+...+.+++++|++ +++++...+    
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-~~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~  111 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-RP-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKST  111 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EE-------EECSSSSEEEEEECTTS-CEEEEECTTSSSC
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-EE-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCC
Confidence            3455567899999999988777 6899999999865432 11       11345679999999998 777777666    


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-------CeEEEEEccCCCCCee
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-------MTLKLWDINMDSGPVA  376 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-------~~v~iwd~~~~~~~~~  376 (513)
                      +.|.+||..++...    ..+...          .....+.+++++|+|+++++...       +.|..+|..  +..+.
T Consensus       112 ~~i~~~d~~~~~~~----~~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~  175 (333)
T 2dg1_A          112 GGIFAATENGDNLQ----DIIEDL----------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVT  175 (333)
T ss_dssp             CEEEEECTTSCSCE----EEECSS----------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEE
T ss_pred             ceEEEEeCCCCEEE----EEEccC----------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEE
Confidence            68999998776531    111110          01246899999999998887542       345555543  22333


Q ss_pred             eeecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCccce--------eecCCCCceeEEE
Q 010287          377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAEST--------TLEASKNPMRRQV  447 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~v~~~~  447 (513)
                      .+......               ...++|+|++++|+ +.+.++.|++|++.+......        .+.++ ..+..++
T Consensus       176 ~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~  239 (333)
T 2dg1_A          176 PIIQNISV---------------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC  239 (333)
T ss_dssp             EEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred             EeecCCCc---------------ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence            33211111               23789999998665 445678999999964222211        11122 3567899


Q ss_pred             EcCCCCceeeecCCCeEEEecCCCCCccccCCc--cccccCCeeEEEEeCCCCEEEEEcCC
Q 010287          448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGN--AFDFSMKLLHLAWHPSENSIACAASN  506 (513)
Q Consensus       448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~sp~~~~la~~~~~  506 (513)
                      +.++++++++...++.|.++.........+...  ..++...+.+++|+||++.|.+++.+
T Consensus       240 ~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          240 IDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999999888777777777732211000000000  00111268999999998877755543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=2.1e-13  Score=138.36  Aligned_cols=251  Identities=10%  Similarity=-0.007  Sum_probs=152.5

Q ss_pred             cccccEEEEEEcCCCCEEE-----eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~la-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      +|...+..++|||||++||     .|+.+..|++||+.+++..                       .  ..+.+.     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----------------------~--~~~~~~-----  167 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----------------------K--VDVIEG-----  167 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----------------------S--SCCBSC-----
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----------------------C--CcccCc-----
Confidence            4556799999999999999     5666678999999877641                       0  011100     


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCe-------------EEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (513)
                           .....++|+  +|++.|+.++.|..             |++|++.++.........                   
T Consensus       168 -----~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-------------------  221 (695)
T 2bkl_A          168 -----GKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-------------------  221 (695)
T ss_dssp             -----CTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-------------------
T ss_pred             -----ccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-------------------
Confidence                 112678995  48889999888765             888887765421100000                   


Q ss_pred             cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  253 (513)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~  253 (513)
                                                                           ...|...+.++.|+|||++|+.+ .++
T Consensus       222 -----------------------------------------------------~~~~~~~~~~~~~SpDG~~l~~~~~~~  248 (695)
T 2bkl_A          222 -----------------------------------------------------RTGDPTTFLQSDLSRDGKYLFVYILRG  248 (695)
T ss_dssp             -----------------------------------------------------CCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred             -----------------------------------------------------cCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence                                                                 12334457889999999998876 444


Q ss_pred             ----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe---CCCcEEEEEcCCcccccccceeecc
Q 010287          254 ----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       254 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                          .|++|+..++. ..        .+..+...+....+ +++ .+++.+.   .++.|.+||+.++....  ...+-.
T Consensus       249 ~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~  315 (695)
T 2bkl_A          249 WSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVP  315 (695)
T ss_dssp             TTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEEC
T ss_pred             CCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEEec
Confidence                56666554332 21        23344455566666 677 5444444   25789999987754210  111111


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      +.          ....+..++|+ ++.++++.. ++..++|.+...+.....+..+...              .+..+.+
T Consensus       316 ~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~~~  370 (695)
T 2bkl_A          316 ED----------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASNLMG  370 (695)
T ss_dssp             CC----------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECCCBS
T ss_pred             CC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEEeec
Confidence            10          02357788888 666667655 4777777665335544444433111              0236778


Q ss_pred             eCCCCEEEEE----eCCCcEEEEecCCCC
Q 010287          406 SGDGGRVATG----SYSNLFRVFGCSEGS  430 (513)
Q Consensus       406 s~~~~~l~~~----~~dg~i~vwd~~~~~  430 (513)
                      +|+++.++..    ...+.|++||+.++.
T Consensus       371 s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          371 LEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8999877622    235789999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=2.7e-11  Score=109.31  Aligned_cols=233  Identities=8%  Similarity=-0.027  Sum_probs=153.9

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..+.++++++++.++++. .++.|..|+.. +. . ..+     .+......+..+++.+++ .++++...++.|.+||.
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~-~~~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I-KEY-----TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD  127 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEE-----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E-EEE-----eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence            347889999999988887 58899999976 22 2 111     112234568999999998 78877777889999997


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                       ++..     ..+...          .....+..++++++|.++++... +.|..||. . ++... +......      
T Consensus       128 -~g~~-----~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~~------  182 (299)
T 2z2n_A          128 -DGKI-----REYELP----------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTPA------  182 (299)
T ss_dssp             -TCCE-----EEEECS----------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSSTT------
T ss_pred             -CCCE-----EEecCC----------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCCC------
Confidence             5442     111111          11245889999999988877654 89999997 3 44332 2111100      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                             ..+..++++++|+++++...++.|.+|+. ++......+..+...+..+++.++++++++...++.|......
T Consensus       183 -------~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          183 -------SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             -------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             -------CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence                   11347899999997777767889999998 5533222233445678899999999977776566666663221


Q ss_pred             -CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          471 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       471 -~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                       ....  .  ........+.++++ ++++++++...+++..|.
T Consensus       255 g~~~~--~--~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~  292 (299)
T 2z2n_A          255 NIIEE--Y--PIQIKSAEPHGICF-DGETIWFAMECDKIGKLT  292 (299)
T ss_dssp             TEEEE--E--ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred             CceEE--E--eCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence             1110  0  01123467899999 999988877778887764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=1.3e-12  Score=120.93  Aligned_cols=172  Identities=10%  Similarity=0.028  Sum_probs=104.8

Q ss_pred             eEEEEeccCCCEEEEE-c---------------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEE
Q 010287          235 INSISNNSDGETFISA-D---------------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS  286 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~---------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  286 (513)
                      +..++|+|+++.|+.+ .                           ...|++||+.+++....        +.. . .+..
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~--------l~~-~-~~~~  175 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE--------FEK-P-RFSS  175 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE--------EEE-E-TTCE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee--------ecC-C-Cccc
Confidence            5667777777766655 2                           25789999986543122        122 2 6788


Q ss_pred             EEEeCCCCeEEEEEeCCC-------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          287 AEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       287 ~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                      +.|+|++  +++++..++       ...+|.+.+++.     ..+            ..+ ..+..+  +|+|+.|+.++
T Consensus       176 ~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~l------------~~~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          176 GIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EKM------------FEK-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EEE------------EEE-ESEEEE--EECSSCEEEEE
T ss_pred             ccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EEe------------ccC-cceeeE--CCCCCEEEEEE
Confidence            9999997  556565542       445555443321     111            111 234444  99999887654


Q ss_pred             -C--------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee-EEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          360 -Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE-CCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       360 -~--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                       +        ..|.+||  . ++.......+...               +.. +.|+ |+ ++++++.++.++|| +.++
T Consensus       234 ~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~---------------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG---------------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------EEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             ccccCCccccceEEEEC--C-CceEeccccCCcc---------------cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence             2        3677777  2 4433333222222               334 7899 88 88899999999999 8744


Q ss_pred             CccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                       .. ..+..+...+..+.++|  .++++++.++.
T Consensus       293 -~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          293 -EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             -SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             -ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence             33 33334467888999999  56666655544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=7.2e-13  Score=134.88  Aligned_cols=163  Identities=10%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             ccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCC------CcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287          231 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA  298 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  298 (513)
                      |...+..+.|+|||++|+.+ .     +..|++||+.+      +.....       .+..+...+.. .|+|++ ..|+
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~  301 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT  301 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence            34457789999999998875 3     56899999986      321121       23344444444 488888 5554


Q ss_pred             EEeC-C---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC--eEEEEEccCC
Q 010287          299 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM--TLKLWDINMD  371 (513)
Q Consensus       299 ~~~~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~--~v~iwd~~~~  371 (513)
                      ..+. +   +.|.+||+.++...  ....+..+..          ...+..+.|++++.++++.. ++  .|.+|++.. 
T Consensus       302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-  368 (710)
T 2xdw_A          302 FKTNRHSPNYRLINIDFTDPEES--KWKVLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-  368 (710)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGG--GCEEEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-
T ss_pred             EEECCCCCCCEEEEEeCCCCCcc--cceeccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-
Confidence            4444 3   36999998775320  0112211110          02577889987777777765 44  566677654 


Q ss_pred             CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-e---CCCcEEEEecCCCC
Q 010287          372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-S---YSNLFRVFGCSEGS  430 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---~dg~i~vwd~~~~~  430 (513)
                      ++.+..+..+...               +..+.++|+++.++.. +   ..+.|++||+.++.
T Consensus       369 g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          369 GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6656666555332               3477889998766532 2   35789999998774

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=2e-12  Score=131.62  Aligned_cols=239  Identities=8%  Similarity=-0.048  Sum_probs=154.2

Q ss_pred             ccCCeEEEEeccCCCEEEEE-c-CC----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          231 HDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~-~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      |...+..++|||||++|+.+ + +|    .|++||+.+++....       .+.  ...+..++|+||+ +.|+.++.++
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-------~~~--~~~~~~~~wspDg-~~l~~~~~~~  192 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------VLE--RVKFSCMAWTHDG-KGMFYNAYPQ  192 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------EEE--EECSCCEEECTTS-SEEEEEECCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-------ccc--CcccceEEEEeCC-CEEEEEEECC
Confidence            33457889999999999976 3 33    899999987654321       111  2225679999999 7888887776


Q ss_pred             c----------------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe------CCe
Q 010287          305 S----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YMT  362 (513)
Q Consensus       305 ~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~------~~~  362 (513)
                      .                |++|++.++.....  ..+...          .+...+..+.|+|||++|+...      ...
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~----------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFP----------DEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccce--EEeccC----------CCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence            5                99999987653211  122221          1224578899999999988643      358


Q ss_pred             EEEEEccC------CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC----CcEEEEecCCCCc-
Q 010287          363 LKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSA-  431 (513)
Q Consensus       363 v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~-  431 (513)
                      |++||+..      .......+..+....                ...|+|+|+.|+..+..    +.|.+||+.++.. 
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~  324 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES  324 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            99999874      222344454443321                23588999988766543    3699999987642 


Q ss_pred             cceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEE--
Q 010287          432 ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA--  503 (513)
Q Consensus       432 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~--  503 (513)
                      ....+..+..  .+..+.+++++.++++...|+..+|  ..  .+...     .....+...|..++++|+++.|+..  
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCEEEEEEe
Confidence            1234444433  6778888888888888888987766  22  11111     0111235678899999999877743  


Q ss_pred             c---CCcEEEEe
Q 010287          504 A---SNSLYMYY  512 (513)
Q Consensus       504 ~---~~~~~i~~  512 (513)
                      +   ...+++|.
T Consensus       400 s~~~P~~i~~~d  411 (710)
T 2xdw_A          400 SFLSPGIIYHCD  411 (710)
T ss_dssp             CSSCCCEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence            2   24566664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=1e-12  Score=121.71  Aligned_cols=215  Identities=11%  Similarity=0.051  Sum_probs=133.9

Q ss_pred             eEEEEeccCCCEEEEE-c-C--Ce--EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287          235 INSISNNSDGETFISA-D-D--LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----  303 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~-d--~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  303 (513)
                      +..++|+|||+.|+.. . +  +.  |.+|++.+++. ..        +..+.. +..+.|+|++ +.|+.++.+     
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-~~--------l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~  129 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-KK--------ILEAKN-IRSLEWNEDS-RKLLIVGFKRREDE  129 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-EE--------EEEESE-EEEEEECTTS-SEEEEEEECCCC--
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-EE--------EEcCCC-ccceeECCCC-CEEEEEEccCCCcC
Confidence            6788999999998876 3 2  44  77778775432 22        122233 8999999999 767666532     


Q ss_pred             ----------------------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-
Q 010287          304 ----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-  360 (513)
Q Consensus       304 ----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-  360 (513)
                                            ..|.+||+.+++..    ..+..             . .+..+.|+||| +++++.. 
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----~~l~~-------------~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----EEFEK-------------P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEE----EEEEE-------------E-TTCEEEEETTE-EEEEEECC
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEE----eeecC-------------C-CcccccCCCCe-EEEEEecc
Confidence                                  56888898776531    11111             1 36788999999 7776643 


Q ss_pred             C-------eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC--------CcEEEEe
Q 010287          361 M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVFG  425 (513)
Q Consensus       361 ~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~vwd  425 (513)
                      .       ...||.+.. ++. ..+..+ ..                 ...++|||++|+.++.+        ..|++||
T Consensus       191 ~~~~~~~~~~~l~~~d~-~~~-~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          191 EIIPQYFKFWDIYIWED-GKE-EKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CSSCCSSCCEEEEEEET-TEE-EEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             cccccccccccEEEeCC-Cce-EEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            1       445665552 432 333322 11                 22349999998877644        3688888


Q ss_pred             cCCCCccceeecCCCCceeE-EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          426 CSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       426 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                        ++ ........+...+.. +.|+ ++ ++++++.++.++|. ..  .+  .......+...|.+++|+|  .++++++
T Consensus       251 --~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~--~g--~~~~~~~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          251 --GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW--DG--EIKPIAKGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             --SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE--SS--SEEEEECSSSEEEEEEESS--SEEEEEE
T ss_pred             --CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec--CC--ceEEEecCCCeEEeeeeeC--cEEEEEc
Confidence              33 333444556677876 8999 88 88888999988883 11  11  1112233467899999999  5555544


Q ss_pred             -CCcE-EEE
Q 010287          505 -SNSL-YMY  511 (513)
Q Consensus       505 -~~~~-~i~  511 (513)
                       .+.. .||
T Consensus       319 ~~~~~~~l~  327 (347)
T 2gop_A          319 TATRLRELF  327 (347)
T ss_dssp             CSSSCCEEE
T ss_pred             CCCChHHhe
Confidence             4432 444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=5.9e-12  Score=111.92  Aligned_cols=238  Identities=8%  Similarity=0.024  Sum_probs=153.9

Q ss_pred             cEEEEEEcCCCCEEE-eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        37 ~V~~v~~sp~g~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ...+++++++|++++ +...++.|.+|+..+....                       .....+.            ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP   69 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence            778999999999777 5577889999986543320                       0001111            347


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      .++++.  +++.++++.. ++.|.+||......... .                                          
T Consensus        70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~------------------------------------------  103 (270)
T 1rwi_B           70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVL-P------------------------------------------  103 (270)
T ss_dssp             CCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEEC-C------------------------------------------
T ss_pred             ceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeee-e------------------------------------------
Confidence            888994  4666555544 88999999765432211 0                                          


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                                       ......+.+++++++++++++. .++.|.+|+..+......      
T Consensus       104 ---------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------  144 (270)
T 1rwi_B          104 ---------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------  144 (270)
T ss_dssp             ---------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------
T ss_pred             ---------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------
Confidence                                             0111347789999999877776 688999997654322211      


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  354 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  354 (513)
                        .......+.++++++++ +++++...++.|.+||........     ..           ..+...+.+++++++|.+
T Consensus       145 --~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~-----~~-----------~~~~~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          145 --PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV-----LP-----------FTDITAPWGIAVDEAGTV  205 (270)
T ss_dssp             --CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE-----CC-----------CSSCCSEEEEEECTTCCE
T ss_pred             --ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEe-----ec-----------ccCCCCceEEEECCCCCE
Confidence              11223457889999998 777777778999999987644211     00           001145789999999977


Q ss_pred             EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          355 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       355 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      +++... +.|.+|+... .. ........              ......++++++|+++++...++.|+++++...
T Consensus       206 ~v~~~~~~~v~~~~~~~-~~-~~~~~~~~--------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          206 YVTEHNTNQVVKLLAGS-TT-STVLPFTG--------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEETTTSCEEEECTTC-SC-CEECCCCS--------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEECCCCcEEEEcCCC-Cc-ceeeccCC--------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            666554 8999999863 22 22211110              011348999999998888889999999998754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1.4e-12  Score=132.43  Aligned_cols=238  Identities=8%  Similarity=-0.027  Sum_probs=147.2

Q ss_pred             cccCCeEEEEeccCCCEEEEE------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287          230 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK  303 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  303 (513)
                      +|...+.+++|||||++|+.+      ++..|++||+.+++....      ..+...  ....++|+||+ +.|+.++.|
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~d  188 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWLP  188 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEECC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEec
Confidence            444558899999999999854      246899999997764301      011111  12578999999 888888887


Q ss_pred             Cc-------------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC----eEEE
Q 010287          304 GS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKL  365 (513)
Q Consensus       304 g~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~----~v~i  365 (513)
                      ..             |++|++.++.....  ..+...          .+...+..+.|||||++|+... ++    .|++
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~~----------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHERT----------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECCC----------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhce--EEEecC----------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence            76             99999987653221  122211          1224688999999999988754 24    5666


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe---CCCcEEEEecCCCCc--cceeecCC-
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS-  439 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~--~~~~~~~~-  439 (513)
                      |+..  ......+..+...               +....+ ++|++++...   .++.|.+||+.++..  ....+..+ 
T Consensus       257 ~~~~--~~~~~~l~~~~~~---------------~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  318 (695)
T 2bkl_A          257 KRPG--EKDFRLLVKGVGA---------------KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS  318 (695)
T ss_dssp             ECTT--CSSCEEEEECSSC---------------CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred             EcCC--CCceEEeecCCCc---------------eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence            6543  2234444443322               114445 5666444443   257899999987642  12233333 


Q ss_pred             CCceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-----CCcEEE
Q 010287          440 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSLYM  510 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-----~~~~~i  510 (513)
                      ...+..+.++ ++.++++...|+..++  ..  +....  .+   .......|..++++|+++.|+...     ...+++
T Consensus       319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TV---QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--EC---CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Ee---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            4567778887 6778888889998888  22  11111  01   111256678889999998877332     245666


Q ss_pred             Ee
Q 010287          511 YY  512 (513)
Q Consensus       511 ~~  512 (513)
                      |+
T Consensus       393 ~d  394 (695)
T 2bkl_A          393 TS  394 (695)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=4e-11  Score=116.88  Aligned_cols=295  Identities=10%  Similarity=0.051  Sum_probs=183.1

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEee--CCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ....+..+.|||||+++++++.++.|.+||+.  +.+.                       ...+...            
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G------------  239 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG------------  239 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC------------
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC------------
Confidence            34467799999999999999999999999974  3321                       1112111            


Q ss_pred             cccceeEEEee--cCCCceEEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          112 EEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       112 ~~~i~~i~~~~--~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                       .....++|++  .+++++++++. .+++|.++|..+.+...........                      .++     
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----------------------~~~-----  291 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----------------------YDE-----  291 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------TTT-----
T ss_pred             -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------ccc-----
Confidence             3356888951  03787888774 4699999998887665543221100                      000     


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEISNQ  265 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~  265 (513)
                                                             ...|. ..+..+..++++..++..  .+|.|.++|....+.
T Consensus       292 ---------------------------------------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~  332 (567)
T 1qks_A          292 ---------------------------------------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  332 (567)
T ss_dssp             ---------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             ---------------------------------------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence                                                   00111 146678888887776665  589999999875442


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc-ccCCCCccccccccc-cE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA-SI  343 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~v  343 (513)
                      .. +.     .+ .......++.|+|++..+++++..++.|.++|+.++++.    ..+.. ...+        |.+ .+
T Consensus       333 ~~-v~-----~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~P--------hpg~g~  393 (567)
T 1qks_A          333 LK-TT-----EI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV----AIEDTGGQTP--------HPGRGA  393 (567)
T ss_dssp             EE-EE-----EE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSSB--------CCTTCE
T ss_pred             ce-ee-----ee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcCC--------CCccce
Confidence            21 11     11 123456789999999444555557899999999988752    22222 1111        111 22


Q ss_pred             EEEEEeecC-CEEEEEe--CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287          344 SDIKFARNG-RHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT  414 (513)
Q Consensus       344 ~~i~~sp~~-~~l~~~~--~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  414 (513)
                      . + ++|++ ...+++.  ++.|.++|....      .+.++++......               -..+..+|++++|.+
T Consensus       394 ~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g---------------~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          394 N-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---------------SLFIKTHPNSQYLYV  456 (567)
T ss_dssp             E-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCSEEEE
T ss_pred             e-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC---------------CEEEEeCCCCCeEEE
Confidence            2 2 57874 4555553  389999998752      2344555443211               014788999999988


Q ss_pred             EeC-------CCcEEEEecCCC-----Cccceeec--------CCCCceeEEEEcCCCCceeeec-----CCCeEEE
Q 010287          415 GSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGS-----LSGVVRR  466 (513)
Q Consensus       415 ~~~-------dg~i~vwd~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~~  466 (513)
                      ...       .++|.++|+.+.     ......+.        .....+..+.|+++|+.+....     .++.|.+
T Consensus       457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v  533 (567)
T 1qks_A          457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV  533 (567)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred             ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence            663       459999999866     22212221        1245678999999999876653     2577777

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=1.4e-11  Score=109.13  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=127.6

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccc-cCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEc
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS-KGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~  311 (513)
                      .+.++.++|+|++++ +.++.|..||. +++...++        ..+ ...+.++.+.+++ +++++.+. ++.|..+|.
T Consensus        38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~--------~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~  106 (276)
T 3no2_A           38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNI--------AAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM  106 (276)
T ss_dssp             CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEE--------ECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT
T ss_pred             CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEE--------cCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC
Confidence            367788999999888 55678999998 56655543        222 3467889999999 88888777 788888885


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                       +++..    ..+.....      ...+......+++.++|.++++... +.|..||..  ++.+..+......      
T Consensus       107 -~Gk~l----~~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~------  167 (276)
T 3no2_A          107 -KGEVL----SKTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP------  167 (276)
T ss_dssp             -TSCEE----EEEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC------
T ss_pred             -CCCEE----EEEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc------
Confidence             55542    22221110      0111123455678899999998775 999999986  7777777654321      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC------CCceeEEEEcCCCCceeee
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~  458 (513)
                                ..+...++|+++++++.++.|..+|..+++. +-.+...      ...+..+...++|..+++.
T Consensus       168 ----------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          168 ----------FSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             ----------CEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             ----------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence                      2677889999999999888999999998843 3333221      2236677888888887776

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=1.8e-10  Score=103.96  Aligned_cols=270  Identities=9%  Similarity=0.011  Sum_probs=174.6

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ...+.+++++++|.+.++...++.|.+|+.. ++..                     . ..+..+.            ..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~   63 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK   63 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence            4678999999999988887778899999865 3210                     0 0111111            45


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      +.++++  .+++.++++...++.|..+|.. ++.... ..                                        
T Consensus        64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~----------------------------------------   99 (300)
T 2qc5_A           64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL----------------------------------------   99 (300)
T ss_dssp             EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC----------------------------------------
T ss_pred             ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC----------------------------------------
Confidence            788888  4567666666667889999877 443211 00                                        


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                        ......+.++++.++++++++. .++.|..+|.. ++.. ..    
T Consensus       100 ----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~----  139 (300)
T 2qc5_A          100 ----------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY----  139 (300)
T ss_dssp             ----------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE----
T ss_pred             ----------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec----
Confidence                                              0111347789999999888877 58899999987 3322 11    


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  353 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  353 (513)
                        .+......+..+++.+++ +++++...++.|..+|. ++...     .+...          .....+..++++++|.
T Consensus       140 --~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~d~~g~  200 (300)
T 2qc5_A          140 --DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPLP----------TNAAAPVGITSGNDGA  200 (300)
T ss_dssp             --ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTSS
T ss_pred             --cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeCC----------CCCCCcceEEECCCCC
Confidence              122234568999999998 77776666889999997 44421     12111          1124588999999998


Q ss_pred             EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      +.++... +.|.+||..  +.... +......             ..+..++++++|++.++...++.|..|+.. +...
T Consensus       201 l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~  263 (300)
T 2qc5_A          201 LWFVEIMGNKIGRITTT--GEISE-YDIPTPN-------------ARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ  263 (300)
T ss_dssp             EEEEETTTTEEEEECTT--CCEEE-EECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             EEEEccCCCEEEEEcCC--CcEEE-EECCCCC-------------CCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence            7776655 789999973  43322 2111100             113489999999977776667899999984 4222


Q ss_pred             ceeecCCCCceeEEEEcCCCCceeeec
Q 010287          433 STTLEASKNPMRRQVQTPSRPSRPLGS  459 (513)
Q Consensus       433 ~~~~~~~~~~v~~~~~~~~~~~l~~~~  459 (513)
                      ...+......+..+++.+++.+.++..
T Consensus       264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          264 EYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             EEECCccCCccceeEeCCCCCEEEEcc
Confidence            222333345677899999988666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=3.8e-11  Score=106.66  Aligned_cols=233  Identities=6%  Similarity=-0.059  Sum_probs=148.1

Q ss_pred             CeEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          234 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ...++++++++++++ +. .++.|.+|+..+.....  .      ...+...+.++++++++ +++++.. ++.|.+||.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--L------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--C------CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--E------eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence            578899999999777 53 58999999876433211  0      11223457889999998 6666655 889999997


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      .....     ..+...           ....+..++++|+|.++++... +.|.+|+... ...........        
T Consensus        95 ~~~~~-----~~~~~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~--------  149 (270)
T 1rwi_B           95 GSNNQ-----TVLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGL--------  149 (270)
T ss_dssp             TCSCC-----EECCCC-----------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECCCCSC--------
T ss_pred             CCceE-----eeeecC-----------CcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeeccccC--------
Confidence            65432     111110           1135789999999987777554 8899997543 22211111110        


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA  470 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~  470 (513)
                             .....++++++|+++++...++.|.+|+....... ............+++.+++.++++...++.|.++...
T Consensus       150 -------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          150 -------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             -------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             -------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence                   01237999999997777777889999998765322 2222333567789999999877777777777773222


Q ss_pred             CCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ...   .......+...+..++++|+|+++++.. ++.+.+|.
T Consensus       222 ~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          222 STT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            111   0001112235789999999999777665 67777764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=4.8e-11  Score=109.11  Aligned_cols=231  Identities=9%  Similarity=-0.021  Sum_probs=145.5

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      ...+++. +++.+++. .++.|.+||..+++...++        . .......+++++++ +++++...++.|.+||+.+
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC
Confidence            4566664 34455555 5899999999987654332        2 24568899999998 7777666899999999988


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ++..    ..+......       +.......+++ .+++++++..  ++.|.++|..+ ++.+..+.....+       
T Consensus       115 ~~~~----~~i~~g~~~-------~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p-------  174 (328)
T 3dsm_A          115 YEIT----GYIECPDMD-------MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP-------  174 (328)
T ss_dssp             TEEE----EEEECTTCC-------TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB-------
T ss_pred             CeEE----EEEEcCCcc-------ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc-------
Confidence            7652    222221100       00013445666 4455555542  48999999986 6666665433221       


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCC----------CcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCceeeecC
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~  460 (513)
                               ..+.++|+|++++++..+          +.|.++|..+++ ....+... ......++++|+++.|..+..
T Consensus       175 ---------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          175 ---------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             ---------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             ---------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence                     268899999987776654          789999998773 33334322 235779999999998877654


Q ss_pred             CCeEEEecC--CCCCccccCCccccc-cCCeeEEEEeCC-CCEEEEE-----cCCcEEEEe
Q 010287          461 SGVVRRVKG--ADNSALDANGNAFDF-SMKLLHLAWHPS-ENSIACA-----ASNSLYMYY  512 (513)
Q Consensus       461 d~~i~~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~sp~-~~~la~~-----~~~~~~i~~  512 (513)
                        .|.+++.  .+...    ...... ......++++|+ +.++++.     ..+.+.+|+
T Consensus       245 --~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 --DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             --SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             --EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence              5555222  21110    011111 467899999995 5555554     267787775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.46  E-value=5.6e-11  Score=108.15  Aligned_cols=159  Identities=8%  Similarity=0.117  Sum_probs=101.6

Q ss_pred             CeEEEEeccCCCEEEEE-cC---------------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe----CCC
Q 010287          234 HINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTH  293 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d---------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~  293 (513)
                      .+.+++++++++++++. .+               +.|..|+.. ++ ...        +..+......++++    |++
T Consensus       118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~--------~~~~~~~~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQ--------VDTAFQFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEE--------EEEEESSEEEEEEEECTTSCE
T ss_pred             CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEE--------eccCCCCcceEEEecccCCCC
Confidence            36789999999888776 44               567777654 22 211        12233456889999    998


Q ss_pred             CeEEEEEeCCCcEEEEEcC-CcccccccceeeccccCCCCcccccccc-ccEEEEEEeecCCEEEEEeC-CeEEEEEccC
Q 010287          294 CNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDY-MTLKLWDINM  370 (513)
Q Consensus       294 ~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~  370 (513)
                      ..++++...++.|.+||+. ++....  ...+..         +.++. ..+..++++++|.++++... +.|.+||..+
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            3344555568999999976 332210  011111         11111 34778999999998887654 8999999874


Q ss_pred             CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCC
Q 010287          371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEG  429 (513)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~  429 (513)
                       ++.+..+..+...               +.+++|+|+++.|+ +...++.|..|++...
T Consensus       257 -g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          257 -GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence             5555555433221               34899999999555 4456688999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=8.1e-10  Score=99.61  Aligned_cols=233  Identities=4%  Similarity=-0.044  Sum_probs=150.1

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      .+.++++.++++++++. .++.|..+|.. ++.. ..      .+......+.++++.+++ .++++...++.|..+|..
T Consensus        63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY------PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE------ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT
T ss_pred             cceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee------cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC
Confidence            47789999999888877 57899999987 4322 11      122234568999999998 777777768899999976


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                       +...     .+...          .....+.++++++++++.++... +.|..||..  ++... +......       
T Consensus       134 -g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~-------  187 (300)
T 2qc5_A          134 -GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YPLPTNA-------  187 (300)
T ss_dssp             -SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EECSSTT-------
T ss_pred             -CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-eeCCCCC-------
Confidence             4431     11111          01145789999999996666654 889999873  44332 2211110       


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD  471 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~  471 (513)
                            .....++++++|++.++....+.|.+|+. ++......+......+..+++.+++++.++...++.|..+....
T Consensus       188 ------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          188 ------AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             ------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred             ------CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence                  11347899999987777667788999998 44232233334455678999999998777766666666632211


Q ss_pred             CCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          472 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       472 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      ..   ...........+.++++.++|+++++... ++..|+
T Consensus       261 ~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          261 TI---QEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             CE---EEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             cE---EEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence            10   00001112456899999999997776653 777664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=2.7e-11  Score=123.84  Aligned_cols=234  Identities=11%  Similarity=0.074  Sum_probs=143.5

Q ss_pred             CCeEEEEeccCCCEEEEE-c-C----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--
Q 010287          233 YHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--  304 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--  304 (513)
                      ..+..++|+|||++|+.+ + +    ..|++||+.+++....         ..+...+..++|+|| ..+ +.++.++  
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------~~~~~~~~~~~wspD-~~l-~~~~~~~~~  231 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------ELKWVKFSGLAWLGN-DAL-LYSRFAEPK  231 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------EEEEEESCCCEESTT-SEE-EEEECCCC-
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------cCCCceeccEEEECC-CEE-EEEEecCcc
Confidence            347789999999999876 3 2    3699999997764321         111222357899999 454 4445544  


Q ss_pred             ------------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-----CeEEEE
Q 010287          305 ------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLW  366 (513)
Q Consensus       305 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-----~~v~iw  366 (513)
                                  .|.+|++.++.....  ..+....          +...+..+.|||||++|+... +     ..|++|
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~  299 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATPE----------LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA  299 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCE--EEECCTT----------CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCchhCE--EEeccCC----------CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence                        388899876553211  1222211          113578999999999888643 2     489999


Q ss_pred             EccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC----CCcEEEEecCCCC-ccceeecCC
Q 010287          367 DINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGS-AESTTLEAS  439 (513)
Q Consensus       367 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~  439 (513)
                      |+.. +  +....+..+....               ... ++|+|+.|+..+.    ++.|.+||+.++. .....+..+
T Consensus       300 d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~  362 (741)
T 1yr2_A          300 RVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES  362 (741)
T ss_dssp             EEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred             ECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence            9985 3  2144444333221               123 4589998887765    3459999988642 333444455


Q ss_pred             CCceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-----CCcEEE
Q 010287          440 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSLYM  510 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-----~~~~~i  510 (513)
                      ...+..+.+. ++.++++...|+..+|  ..  +....  .+   .......|..++++|+++.|+...     ...+++
T Consensus       363 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          363 KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AV---SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA  436 (741)
T ss_dssp             SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--EC---BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ec---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            5556667776 5667788888988877  22  11111  01   111256788999999998776332     245666


Q ss_pred             Ee
Q 010287          511 YY  512 (513)
Q Consensus       511 ~~  512 (513)
                      |+
T Consensus       437 ~d  438 (741)
T 1yr2_A          437 LD  438 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=3.6e-11  Score=109.95  Aligned_cols=249  Identities=8%  Similarity=0.024  Sum_probs=152.7

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      +....+.++. +++.++...++.|.+||..+++.+                       ..+.. .            ...
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~-----------------------~~i~~-~------------~~p   86 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEV-----------------------GRITG-F------------TSP   86 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEEC-C------------SSE
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEE-----------------------EEcCC-C------------CCC
Confidence            4567777753 455566667789999998776531                       12211 1            447


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      ..+++++  ++..+++...++.|.+||..+++..........                                      
T Consensus        87 ~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~--------------------------------------  126 (328)
T 3dsm_A           87 RYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDM--------------------------------------  126 (328)
T ss_dssp             EEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred             cEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence            7888865  554444444899999999998876543221110                                      


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccC
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       .+.......+++ .+++.+++. . ++.|.++|+++++....+    
T Consensus       127 ---------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i----  168 (328)
T 3dsm_A          127 ---------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL----  168 (328)
T ss_dssp             ---------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE----
T ss_pred             ---------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE----
Confidence                                             000012334555 344445554 3 899999999876543322    


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCC----------CcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                          .. ......+.++|++ ++++++..+          +.|.++|..+++..    ..+....           ....
T Consensus       169 ----~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~-----------g~~p  227 (328)
T 3dsm_A          169 ----TI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL-----------GDWP  227 (328)
T ss_dssp             ----EC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT-----------TCCC
T ss_pred             ----Ec-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC-----------CCCc
Confidence                11 2335678899998 777666554          78999999887642    2222211           0247


Q ss_pred             EEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEE----eCC
Q 010287          344 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG----SYS  418 (513)
Q Consensus       344 ~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~d  418 (513)
                      ..++++|+++.|++++. .|.+||..+ ++...........          .   ....++++| ++.++++.    ..+
T Consensus       228 ~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~----------~---~p~gi~vdp~~g~lyva~~~~y~~~  292 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFRD----------T---KYYGLTVNPNNGEVYVADAIDYQQQ  292 (328)
T ss_dssp             EEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCCS----------S---CEEEEEECTTTCCEEEEECTTSSSE
T ss_pred             eeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCCC----------C---ceEEEEEcCCCCeEEEEcccccccC
Confidence            88999999999888765 899999875 4432111111000          0   023799999 55555565    578


Q ss_pred             CcEEEEecCCCCccceeec
Q 010287          419 NLFRVFGCSEGSAESTTLE  437 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~  437 (513)
                      +.|.+||.. + +....++
T Consensus       293 ~~V~v~d~~-g-~~~~~i~  309 (328)
T 3dsm_A          293 GIVYRYSPQ-G-KLIDEFY  309 (328)
T ss_dssp             EEEEEECTT-C-CEEEEEE
T ss_pred             CEEEEECCC-C-CEEEEEE
Confidence            899999998 5 4444443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=1.4e-11  Score=125.92  Aligned_cols=159  Identities=9%  Similarity=0.019  Sum_probs=93.5

Q ss_pred             CeEEEEeccCCCEEEEE-cC-----CeEEEEEcCCCcce-eeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----
Q 010287          234 HINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----  302 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d-----~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----  302 (513)
                      .+..+.|+|||++|+.. .+     ..|++||+.++... ..       .+..+...+.... +|++ ..|+..+.    
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~  339 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDFV-DGVG-DQLWFVSGDGAP  339 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEEE-EEET-TEEEEEECTTCT
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEEE-eccC-CEEEEEECCCCC
Confidence            47789999999988875 43     38999999865211 21       2233333444443 4777 56665555    


Q ss_pred             CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc
Q 010287          303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      ++.|.+||+.++.  .. ...+-           ..+...+..+.++ ++.++++.. ++..+||.+...+.....+..+
T Consensus       340 ~~~l~~~d~~~~~--~~-~~~l~-----------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          340 LKKIVRVDLSGST--PR-FDTVV-----------PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             TCEEEEEECSSSS--CE-EEEEE-----------CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred             CCEEEEEeCCCCc--cc-cEEEe-----------cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence            3459999987642  00 11111           1112346677777 555666654 4776666655335545544432


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEE----eCCCcEEEEecCCCC
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGS  430 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vwd~~~~~  430 (513)
                      ...              .+..+.++|+++.|+..    ...++|++||+.++.
T Consensus       405 ~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          405 GIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            111              13478889998866522    245789999998763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=1.4e-10  Score=102.79  Aligned_cols=225  Identities=10%  Similarity=0.069  Sum_probs=148.3

Q ss_pred             CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCC
Q 010287           46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN  125 (513)
Q Consensus        46 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~  125 (513)
                      .+++|++++.++.|.+||.++++..                       -.+..+..           ..++++.+.|  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~-----------------------w~~~~~~~-----------~~~~~~~~~p--d   47 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV-----------------------WEYPLEKG-----------WECNSVAATK--A   47 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE-----------------------EEEECCTT-----------CCCCEEEECT--T
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE-----------------------EEeCCCcc-----------CCCcCeEECC--C
Confidence            3578999999999999998777641                       22222220           2478888854  7


Q ss_pred             CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (513)
Q Consensus       126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  205 (513)
                      +++++  +.++.|..||. +++.......                                                   
T Consensus        48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~---------------------------------------------------   73 (276)
T 3no2_A           48 GEILF--SYSKGAKMITR-DGRELWNIAA---------------------------------------------------   73 (276)
T ss_dssp             SCEEE--ECBSEEEEECT-TSCEEEEEEC---------------------------------------------------
T ss_pred             CCEEE--eCCCCEEEECC-CCCEEEEEcC---------------------------------------------------
Confidence            77777  45788999998 6664443221                                                   


Q ss_pred             ceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCC
Q 010287          206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEV  283 (513)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  283 (513)
                                              .....+.++.+.++|+++++. . ++.|..+|.. ++...++ .... ....+...
T Consensus        74 ------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~-~~~~-~~~~~~~~  126 (276)
T 3no2_A           74 ------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKT-EFET-GIERPHAQ  126 (276)
T ss_dssp             ------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEE-EECC-SCSSGGGS
T ss_pred             ------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEE-eccC-CCCccccc
Confidence                                    111236678899999999986 5 6777777763 4433332 1110 11122233


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-Ce
Q 010287          284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MT  362 (513)
Q Consensus       284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~  362 (513)
                      ...+...+++ +++++...++.|..||.. ++..    ..+...             ....++...++|.+++++.+ +.
T Consensus       127 ~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~----w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~  187 (276)
T 3no2_A          127 FRQINKNKKG-NYLVPLFATSEVREIAPN-GQLL----NSVKLS-------------GTPFSSAFLDNGDCLVACGDAHC  187 (276)
T ss_dssp             CSCCEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEECS-------------SCCCEEEECTTSCEEEECBTTSE
T ss_pred             ccCceECCCC-CEEEEecCCCEEEEECCC-CCEE----EEEECC-------------CCccceeEcCCCCEEEEeCCCCe
Confidence            4566788998 899999999999999987 7763    333322             23456777889999998776 78


Q ss_pred             EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      |..+|..+ ++.+..+.......         ..+..+..+...++|+++++..
T Consensus       188 v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          188 FVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEec
Confidence            99999886 88887776433110         0122245788889999888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.37  E-value=4.9e-10  Score=101.88  Aligned_cols=195  Identities=11%  Similarity=0.028  Sum_probs=122.3

Q ss_pred             CCeEEEEeccC-CCEEEEEcCCeEEEEEcCCCcceeee-cccCccccccccCCeEEEEEeCCCCeEEEEEeCC-------
Q 010287          233 YHINSISNNSD-GETFISADDLRINLWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-------  303 (513)
Q Consensus       233 ~~v~~~~~~~~-~~~l~s~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------  303 (513)
                      ..+.+++++++ ++++++...+.|.+||.. ++. ..+ ...   ........+.++++++++ +++++...+       
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~-~~~~~~~---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTF-EEIAKKD---SEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADY  144 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCE-EECCSBC---TTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCC
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCE-EEEEecc---CCCccccCCcCEEECCCC-CEEEEecCcccccccc
Confidence            45788999999 776666655589999987 442 221 100   001123457899999998 777766554       


Q ss_pred             --------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe----ecCCEEEEEe-C-CeEEEEEcc
Q 010287          304 --------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA----RNGRHILSRD-Y-MTLKLWDIN  369 (513)
Q Consensus       304 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~l~~~~-~-~~v~iwd~~  369 (513)
                              +.|..||.. ++.    .....             +......++++    |+++.++.++ . +.|.+||+.
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~----~~~~~-------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQM----IQVDT-------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCE----EEEEE-------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-CCE----EEecc-------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence                    466666654 332    11111             11346789999    9997666543 3 899999986


Q ss_pred             CCCCC-----eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee
Q 010287          370 MDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR  444 (513)
Q Consensus       370 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~  444 (513)
                      ..+..     ...+..+.              ......++++++|+++++...++.|.+||..++. ....+..+...+.
T Consensus       207 ~~g~~~~~~~~~~~~~~~--------------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~  271 (314)
T 1pjx_A          207 GPAKIENKKVWGHIPGTH--------------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPS  271 (314)
T ss_dssp             ETTEEEEEEEEEECCCCS--------------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEE
T ss_pred             CCCccccceEEEECCCCC--------------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEeCCCCCce
Confidence            21321     11111110              0012378999999988888788899999988653 3345555657788


Q ss_pred             EEEEcCCCCce-eeecCCCeEEE
Q 010287          445 RQVQTPSRPSR-PLGSLSGVVRR  466 (513)
Q Consensus       445 ~~~~~~~~~~l-~~~~~d~~i~~  466 (513)
                      .++++++++.| ++...++.|..
T Consensus       272 ~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          272 NLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCeEEE
Confidence            99999999955 44445555555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=1.1e-09  Score=98.61  Aligned_cols=234  Identities=8%  Similarity=0.067  Sum_probs=147.0

Q ss_pred             ccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           36 DIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        36 ~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .--.+..|+|+ +.++++...++.|..|+..+++..                        .+ ...            ..
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~-~~~------------~~   55 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RV-TMD------------AP   55 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EE-ECS------------SC
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EE-eCC------------Cc
Confidence            34568889996 556677777889999997654420                        01 111            55


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      +.++++.  +++.++ ++. ++.|.+||.++++.........                                      
T Consensus        56 ~~~i~~~--~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------   93 (297)
T 3g4e_A           56 VSSVALR--QSGGYV-ATI-GTKFCALNWKEQSAVVLATVDN--------------------------------------   93 (297)
T ss_dssp             EEEEEEB--TTSSEE-EEE-TTEEEEEETTTTEEEEEEECCT--------------------------------------
T ss_pred             eEEEEEC--CCCCEE-EEE-CCeEEEEECCCCcEEEEEecCC--------------------------------------
Confidence            8899994  477644 444 5679999998876544322110                                      


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC---------CeEEEEEcCCCc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISN  264 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d---------~~i~vwd~~~~~  264 (513)
                                                        ......+..++++|+|+++++. ..         ..-.+|.+....
T Consensus        94 ----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           94 ----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             ----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             ----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence                                              0001236789999999977765 22         234555554333


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc--CCcccccccceeeccccCCCCcccccccccc
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      ....        +..+......++|+|++..++++.+.++.|.+||+  .++.....  +.+..         +..+.+.
T Consensus       140 ~~~~--------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--~~~~~---------~~~~~~~  200 (297)
T 3g4e_A          140 HVKK--------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--RSVYK---------LEKEEQI  200 (297)
T ss_dssp             CEEE--------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--EEEEE---------CCGGGCE
T ss_pred             CEEE--------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc--EEEEE---------CCCCCCC
Confidence            2221        12233456899999998445566677899999987  44442111  11110         1112245


Q ss_pred             EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe-CCCCEEEEEeC
Q 010287          343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY  417 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  417 (513)
                      ...++++++|.+.++... +.|.+||..+ ++.+..+..+...               +++++|. |+++.|+.++.
T Consensus       201 p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          201 PDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEEB
T ss_pred             CCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEcC
Confidence            788999999988777665 8899999885 7777777655332               4589998 88887765553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.34  E-value=4.6e-10  Score=102.48  Aligned_cols=220  Identities=11%  Similarity=0.081  Sum_probs=127.1

Q ss_pred             eEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ...++|+|||++++.+ .  ++.|.++|+.+.+...++      .+.+      +....|.+...+++.+.||.+.+.++
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI------~v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML------DVPD------CYHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE------ECCS------EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE------ECCC------cceeecCCCceeEEECCCCCEEEEEC
Confidence            4468899999998877 2  689999999977644332      1111      12233544467778888999999998


Q ss_pred             CC-cccccccceeeccccCCCCccccccccccE-EEEEEe-ecCCEEEEEeCCeEEEEEccCCCC--Ceeeeec--c---
Q 010287          312 RQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFA-RNGRHILSRDYMTLKLWDINMDSG--PVATFQV--H---  381 (513)
Q Consensus       312 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~s-p~~~~l~~~~~~~v~iwd~~~~~~--~~~~~~~--~---  381 (513)
                      .+ ++........+....            .++ ....|. ++|++++...+|.|++.|+.. ..  ....+..  .   
T Consensus       207 ~~~g~v~~~~~~~~~~~~------------~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~-~~~~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          207 GTEGTPEITHTEVFHPED------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAER  273 (386)
T ss_dssp             CSSSCCEEEECCCCSCTT------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEECCCEESSCHHHH
T ss_pred             CCCCeEEEeecceecccc------------ccccccceeEcCCCcEEEEeCCCEEEEEECCC-Ccceeecceeccccccc
Confidence            76 443211101111100            111 123564 688777766669999999874 22  2222210  0   


Q ss_pred             -cccccccccccccCCccceeeEEEeCCCCEEEEEeC----------CCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          382 -EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       382 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                       .....        ..   ...++++++++.++....          .+.|.+.|+.+++.+ ..+..- .++..+.+++
T Consensus       274 ~~g~~p--------~g---~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~  340 (386)
T 3sjl_D          274 ADGWRP--------GG---WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQ  340 (386)
T ss_dssp             HTTEEE--------CS---SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECS
T ss_pred             cccccC--------CC---cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE-EEEECC-CCcceEEECC
Confidence             00000        00   115788999998887643          257999999988443 333322 2677999999


Q ss_pred             CCC-ceee-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          451 SRP-SRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       451 ~~~-~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      +++ .|++ ...++.|.+++.....    ....+......++|.+++|
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~k----~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESGE----ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCC----EEEEECCCCSSCCEEEECC
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCc----EEEEecCCCCCceeEECCc
Confidence            997 5544 4568888883332211    0011122344566666666

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=5e-10  Score=113.37  Aligned_cols=159  Identities=8%  Similarity=0.026  Sum_probs=95.2

Q ss_pred             cCCeEEEEeccCCCEEEEE-c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---
Q 010287          232 DYHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---  303 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---  303 (513)
                      ...+..+.|+||+++|+.. .    ...|+++|+.++.....       .+..+....... +++++..+++....+   
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~  304 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAPN  304 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence            3446788999999988653 2    35899999986542222       233344444444 566664666665544   


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeee
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~  379 (513)
                      +.|..+|+.++...  ..+.+..            |...+.  .|++++..|+...  +  ..|++|++.  +.....+.
T Consensus       305 ~~l~~~d~~~~~~~--~~~~l~~------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~  366 (693)
T 3iuj_A          305 RRLVTVDAANPGPA--HWRDLIP------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVA  366 (693)
T ss_dssp             CEEEEEETTSCCGG--GCEEEEC------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEEC
T ss_pred             CEEEEEeCCCCCcc--ccEEEec------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEee
Confidence            57888998775421  1122222            122333  8999998888643  3  378888876  44444443


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCC----CcEEEEecCCCC
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS  430 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~  430 (513)
                      .....              .+..+.++++++.|+....+    +.++.||+.++.
T Consensus       367 ~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          367 LPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             cCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            22211              02255677888766654444    789999988763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=3.5e-09  Score=99.52  Aligned_cols=268  Identities=11%  Similarity=0.081  Sum_probs=155.5

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      .....|+|+|+|+++++...++.|++||..++...                       ......             ...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~  174 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG  174 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence            46789999999998888888899999997655421                       111111             223


Q ss_pred             eeEEEeecCCCceEEEeecCC--eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      . ++|.  +++..|+++..++  .|.+++...+.........                                      
T Consensus       175 ~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~--------------------------------------  213 (409)
T 3hrp_A          175 K-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL--------------------------------------  213 (409)
T ss_dssp             B-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC--------------------------------------
T ss_pred             c-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeEEeeec--------------------------------------
Confidence            3 8884  4777888887765  7888887654321111000                                      


Q ss_pred             CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287          194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                                                        .......+.+++++|++..|+.+ .++.|+.||..+..... +...
T Consensus       214 ----------------------------------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~  258 (409)
T 3hrp_A          214 ----------------------------------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQL  258 (409)
T ss_dssp             ----------------------------------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEEC
T ss_pred             ----------------------------------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-Eecc
Confidence                                              00012346778899954455556 68899999998554221 1000


Q ss_pred             CccccccccCCe-E-EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc-CCCCc--cccccccccEEEEE
Q 010287          273 KPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASISDIK  347 (513)
Q Consensus       273 ~~~~~~~~~~~i-~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~v~~i~  347 (513)
                         ...++...- . .++|+|++..++++-..++.|+.|+.... .     ..+-+.. .....  ......-.....++
T Consensus       259 ---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia  329 (409)
T 3hrp_A          259 ---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMT  329 (409)
T ss_dssp             ---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred             ---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence               011112211 3 99999964377887778899999986532 1     1111111 00000  00001123578999


Q ss_pred             EeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          348 FARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       348 ~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      ++|+|.++++-. . +.|+.|++.. +. +..+.++...............+.....+++++++.++++-..++.|+.++
T Consensus       330 ~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          330 VDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             ECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             EeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            999999777765 5 8999999763 43 444444311100000000001112234899999988888888888888876


Q ss_pred             c
Q 010287          426 C  426 (513)
Q Consensus       426 ~  426 (513)
                      +
T Consensus       408 ~  408 (409)
T 3hrp_A          408 V  408 (409)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=2.1e-09  Score=96.65  Aligned_cols=188  Identities=9%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---------
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---------  303 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------  303 (513)
                      ..+.+++++++++++++ .++.|.+||.+++... .+...   ........+..++++|++ +++++....         
T Consensus        54 ~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~-~~~~~---~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           54 APVSSVALRQSGGYVAT-IGTKFCALNWKEQSAV-VLATV---DNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             SCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEE-EEEEC---CTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred             CceEEEEECCCCCEEEE-ECCeEEEEECCCCcEE-EEEec---CCCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence            34788999999995554 4678999998865422 11110   000113457899999998 666544322         


Q ss_pred             CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc-CCCCCe--eee
Q 010287          304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN-MDSGPV--ATF  378 (513)
Q Consensus       304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~-~~~~~~--~~~  378 (513)
                      ....+|.+......   .....             .......++|+|+++.|+.++ . +.|.+|++. ..+...  +.+
T Consensus       128 ~~~~l~~~d~~g~~---~~~~~-------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          128 HQGALYSLFPDHHV---KKYFD-------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             TCEEEEEECTTSCE---EEEEE-------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             CCcEEEEEECCCCE---EEEee-------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence            23455554322111   11111             113467899999999776654 3 899999984 223321  111


Q ss_pred             ---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc-CCCCc
Q 010287          379 ---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPS  454 (513)
Q Consensus       379 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  454 (513)
                         ......               ...++++++|++.++...++.|..||..++ +....+..+...+.+++|. |+++.
T Consensus       192 ~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          192 YKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             EECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCCCCceEEEEeCCCCCE
Confidence               111111               237899999998888778889999999877 4446666666678899998 78776


Q ss_pred             eeee
Q 010287          455 RPLG  458 (513)
Q Consensus       455 l~~~  458 (513)
                      |...
T Consensus       256 L~vt  259 (297)
T 3g4e_A          256 MYVT  259 (297)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.27  E-value=2.3e-08  Score=92.61  Aligned_cols=257  Identities=7%  Similarity=0.006  Sum_probs=146.4

Q ss_pred             eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      .++++|  |++.++++.          .++.|.+||..+.+............ ..       ....+..+.++|||+.+
T Consensus        70 ~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-~~-------~g~~p~~~~~spDG~~l  139 (373)
T 2mad_H           70 NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FD-------VGPYSWMNANTPNNADL  139 (373)
T ss_pred             CeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-cc-------cCCCccceEECCCCCEE
Confidence            788855  888888875          36789999998876554433220000 00       00123367899999987


Q ss_pred             ccccCCCCCCCCcCCC--CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCC
Q 010287          187 ERNFGCASNDSSFPPG--GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEI  262 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~  262 (513)
                                  +..+  ..+.|.++| ...+....     ..  ...   .++.+.|+++. +++. .||.+.++|. +
T Consensus       140 ------------~v~n~~~~~~v~viD-~t~~~~~~-----~i--~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~  195 (373)
T 2mad_H          140 ------------LFFQFAAGPAVGLVV-QGGSSDDQ-----LL--SSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A  195 (373)
T ss_pred             ------------EEEecCCCCeEEEEE-CCCCEEeE-----Ec--CCC---ceEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence                        3333  246788888 65443211     00  001   12445565543 3333 6999999999 6


Q ss_pred             CcceeeecccCccccccccCC-eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          263 SNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      ++..... ...+ .+ ....+ .....+.+++..+++. +..+.+.+.|+.......  ...++........  ..-...
T Consensus       196 g~~~~~~-~~~~-~~-~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~~p~  267 (373)
T 2mad_H          196 GGAAGAG-LVGA-ML-TAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATN--KAPIDALSGGRKA--DTWRPG  267 (373)
T ss_pred             CcEEEEE-eccc-cc-cCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceE--eeeeeecCCcccc--cceecC
Confidence            6543211 0000 01 11112 2335566766344444 478899999987543210  1122111000000  000012


Q ss_pred             cEEEEEEeecCCEEEEEe-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          342 SISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                      ....+.++|++..++++.           .+.|.++|..+ .+.+..+......                ..+.|+|||+
T Consensus       268 g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~  330 (373)
T 2mad_H          268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGG  330 (373)
T ss_pred             ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCC
Confidence            345578999988777642           15799999986 7777777544322                2899999999


Q ss_pred             -EEEEEe-CCCcEEEEecCCCCcc
Q 010287          411 -RVATGS-YSNLFRVFGCSEGSAE  432 (513)
Q Consensus       411 -~l~~~~-~dg~i~vwd~~~~~~~  432 (513)
                       .++++. .++.|.+||+.+++..
T Consensus       331 ~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          331 PDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             eEEEEEcCCCCeEEEEECCCCCEE
Confidence             777777 5899999999988433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.9e-10  Score=105.53  Aligned_cols=189  Identities=12%  Similarity=0.119  Sum_probs=123.9

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..++.+++++...++++|+.+ .+++|+++.....                         +..-..++++.....+.. |
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~-------------------------~~~~~~~~~~~~~~~lp~-V   90 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH-------------------------ITSDSTPLTFKWEKEIPD-V   90 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH-------------------------HHSSSCCCCCSEEEECTT-E
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh-------------------------hccccccccceEEeeCCC-e
Confidence            479999999999999999988 4677997543310                         000000011122223336 9


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      +.++|    ++..|+++ .++.|++||+.+......                                            
T Consensus        91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~--------------------------------------------  121 (388)
T 1xip_A           91 IFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT--------------------------------------------  121 (388)
T ss_dssp             EEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE--------------------------------------------
T ss_pred             eEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc--------------------------------------------
Confidence            99999    55688887 889999999986532111                                            


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                                                      ...|...+.++.+.+..  ++++ .||.|.+||+.++...        
T Consensus       122 --------------------------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~--------  159 (388)
T 1xip_A          122 --------------------------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK--------  159 (388)
T ss_dssp             --------------------------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE--------
T ss_pred             --------------------------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc--------
Confidence                                            11223345566665542  6666 8999999999855432        


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccc---cccccEEEEEEeec
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT---EIIASISDIKFARN  351 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~sp~  351 (513)
                          .+...|+|++|+|+|   ++.|..||.+++|+...+....  .+.+..+.      .+.   +|...|.+|.|.++
T Consensus       160 ----~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~Pp------~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          160 ----QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSLPS------ELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             ----EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECCCH------HHHTSCTTTSEEEEEEESSS
T ss_pred             ----cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecCCc------ccccccCCCeeEEEEEEecC
Confidence                135679999999997   5778999999999887655210  01121110      011   25578999999999


Q ss_pred             CCEEEE
Q 010287          352 GRHILS  357 (513)
Q Consensus       352 ~~~l~~  357 (513)
                      +.++++
T Consensus       225 ~~flv~  230 (388)
T 1xip_A          225 QDFLAV  230 (388)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=8.4e-09  Score=94.05  Aligned_cols=229  Identities=11%  Similarity=0.042  Sum_probs=139.0

Q ss_pred             cEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           37 IISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        37 ~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ......|+|+ +.+++++..++.|..|+..+++.                        ..+. ..            ..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v   92 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMG   92 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccc
Confidence            3567889997 45666777788999999765432                        0111 11            458


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      .++.|.|  ++.++++ +.+ .|.+||..+++.........                                       
T Consensus        93 ~~i~~~~--dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~---------------------------------------  129 (326)
T 2ghs_A           93 SALAKIS--DSKQLIA-SDD-GLFLRDTATGVLTLHAELES---------------------------------------  129 (326)
T ss_dssp             EEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEEEECSST---------------------------------------
T ss_pred             eEEEEeC--CCeEEEE-ECC-CEEEEECCCCcEEEEeeCCC---------------------------------------
Confidence            8999966  6655554 444 48999988776543211100                                       


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC------CeEEEEEcCCCcceee
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFN  268 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------~~i~vwd~~~~~~~~~  268 (513)
                                                       ......+.+++++++|+++++. .+      +.|..++  + .....
T Consensus       130 ---------------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~  173 (326)
T 2ghs_A          130 ---------------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTK  173 (326)
T ss_dssp             ---------------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEE
T ss_pred             ---------------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEE
Confidence                                             0001237789999999977765 22      3455555  2 22211


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC--Cc-ccccccceeeccccCCCCccccccccccEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                              +..+......++|+|++..++++.+.++.|.+||+.  ++ .....  ..+..         +.........
T Consensus       174 --------~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~---------~~~~~~~p~g  234 (326)
T 2ghs_A          174 --------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFID---------STGIKGGMDG  234 (326)
T ss_dssp             --------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEE---------CTTSSSEEEE
T ss_pred             --------eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc--eEEEE---------CCCCCCCCCe
Confidence                    112234567899999983344555567899999986  44 32111  11110         0011134678


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe-CCCCEEEEEeC
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY  417 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  417 (513)
                      ++++++|.+.++... +.|.+||..  ++.+..+..+...               +++++|+ ++++.|+.++.
T Consensus       235 i~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~---------------~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          235 SVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ---------------TTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred             eEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCCC---------------cEEEEEecCCCCEEEEEec
Confidence            999999987777654 889999974  6666666544322               4589998 88887765543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=1.4e-09  Score=100.14  Aligned_cols=271  Identities=6%  Similarity=-0.019  Sum_probs=158.3

Q ss_pred             ccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      ..+..++++|+|+++++..  .++.++||.+.+++.     ..+          |...  ....+|-            .
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----~~~----------p~~~--~~~~~~~------------~   67 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----IPF----------PPQS--GNAIITF------------D   67 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----EES----------CCCC--SSCCCCC------------S
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----ecC----------CCcc--cCcccce------------e
Confidence            5889999999999988864  234467777653321     000          0000  0111222            5


Q ss_pred             cceeEEEeecCCCceEEEeec-----CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                      .+..+++  ++++.++++-..     ++.|.+||+.+++......+....                              
T Consensus        68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------------  115 (343)
T 2qe8_A           68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------------  115 (343)
T ss_dssp             CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------------
T ss_pred             EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------------
Confidence            6899999  446665555433     578999999988755443221100                              


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-----cCCeEEEEEcCCC
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEIS  263 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~vwd~~~~  263 (513)
                                                              ..+...+..+++++++..++.+     .++.|.+||+.++
T Consensus       116 ----------------------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A          116 ----------------------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             ----------------------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred             ----------------------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence                                                    0111235778898765454433     3689999999865


Q ss_pred             cceeeecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          264 NQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      +. ..+       +.+|..... ...+.+++ ..+.+.+.++.++.|.                              ..
T Consensus       156 ~~-~r~-------~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~~  196 (343)
T 2qe8_A          156 LA-ARV-------LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------LG  196 (343)
T ss_dssp             CE-EEE-------CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------CC
T ss_pred             CE-EEE-------ecCCCcccccccceeECC-EEEEeccCCCceecee------------------------------cc
Confidence            43 222       122211000 13344566 6677777777776553                              12


Q ss_pred             EEEEEEeecCCEEEEEeC--CeEEEEEccC--CCCC-----ee--eeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          343 ISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~~--~~v~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      +..|+|+|+++.|+.++.  ..+..++...  .+..     ..  ...++...               ...++++++|.+
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~l  261 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHNI  261 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCCE
T ss_pred             cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCCE
Confidence            577999999998888764  4555555421  0110     00  00011110               126899999999


Q ss_pred             EEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCC
Q 010287          412 VATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                      +++...++.|.+||..++. ....... .......+++.+++.++++.+..+
T Consensus       262 ~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          262 YVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             EEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            9998889999999985452 2222221 244577899999988777765443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=2.2e-09  Score=96.96  Aligned_cols=234  Identities=12%  Similarity=0.037  Sum_probs=144.0

Q ss_pred             cccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ............|+|+|+ +++++..++.|..|+.. ++.                        ..+..+.         
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~---------   85 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT---------   85 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC---------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC---------
Confidence            334556778899999998 66777788999999862 221                        1122222         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..+..+++  ++++.++++...++.|.+|+.. ++.........                                 
T Consensus        86 ---~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~---------------------------------  126 (305)
T 3dr2_A           86 ---AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA---------------------------------  126 (305)
T ss_dssp             ---SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET---------------------------------
T ss_pred             ---CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC---------------------------------
Confidence               45788999  4577666555556789999876 44322211000                                 


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE----Ec--------------
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD--------------  251 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~--------------  251 (513)
                                                             ......+..++++++|+++++    |.              
T Consensus       127 ---------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A          127 ---------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             ---------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             ---------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence                                                   000123567888899888875    31              


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC------CcEEEEEcCCcccccccceeec
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      .+.|..+|..+++...         +. .......++|+|++ +.|+.+...      +.|.+||+..+....  ...+.
T Consensus       168 ~~~v~~~d~~~g~~~~---------~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~  234 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQR---------MA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFA  234 (305)
T ss_dssp             CEEEEEECSSSCCCEE---------EE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEE
T ss_pred             CCeEEEEcCCCCcEEE---------Ee-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEE
Confidence            2456777765443221         11 23456789999999 666655554      789999986543110  11111


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      ..           ..+....++++++|.+.++. .+.|.+|+..  ++.+..+..+..                +..++|
T Consensus       235 ~~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f  284 (305)
T 3dr2_A          235 SV-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTF  284 (305)
T ss_dssp             CC-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEE
T ss_pred             EC-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEE
Confidence            10           01334568899999955554 4459999975  666666654432                237899


Q ss_pred             eCCCCEEEEEeCCC
Q 010287          406 SGDGGRVATGSYSN  419 (513)
Q Consensus       406 s~~~~~l~~~~~dg  419 (513)
                      +|+++.|..++.++
T Consensus       285 ~~d~~~L~it~~~~  298 (305)
T 3dr2_A          285 DQAQQRLFITGGPC  298 (305)
T ss_dssp             CTTSCEEEEEETTE
T ss_pred             eCCCCEEEEEcCCe
Confidence            99999888887764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=1.1e-08  Score=96.06  Aligned_cols=206  Identities=9%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             EEeccCCCEEEEE-cCC--eEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          238 ISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       238 ~~~~~~~~~l~s~-~d~--~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      ++|+++++.|+++ .++  .|.+++.........+-     .+ ......+.+++++|++..+++ +..++.|..||..+
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g-----~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~  249 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG-----QLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKT  249 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE-----ECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee-----eccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCC
Confidence            8899999988887 434  78888887544321110     01 113456788999995425444 77789999999876


Q ss_pred             cccccccceeeccccCCCCcccccccccc--EEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      +..     ..+.....       .+....  ...++|+|++..|+.++ . +.|+.|+..  +. +..+.++........
T Consensus       250 ~~~-----~~~~~~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g~-~~~~~g~~~~~g~~d  314 (409)
T 3hrp_A          250 QEV-----TLIKQLEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--GE-CEWFCGSATQKTVQD  314 (409)
T ss_dssp             CCE-----EEEEECCC-------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--CC-EEEEEECTTCCSCBC
T ss_pred             CCE-----EEEecccc-------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--CC-EEEEEeCCCCCCcCC
Confidence            542     11211000       000011  23899999655555444 4 899999876  33 333333320000000


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCC---------------CCceeEEEEcCCCC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEAS---------------KNPMRRQVQTPSRP  453 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~  453 (513)
                      .......+.....++++|+|+++++-+ .++.|+.|++.++. . .++.++               ......+++.+++.
T Consensus       315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~  392 (409)
T 3hrp_A          315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-V-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG  392 (409)
T ss_dssp             EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-E-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred             CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-E-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence            000000111234899999999888877 88999999977662 2 333332               24567899999988


Q ss_pred             ceeeecCCCeEEE
Q 010287          454 SRPLGSLSGVVRR  466 (513)
Q Consensus       454 ~l~~~~~d~~i~~  466 (513)
                      ++++...++.|+.
T Consensus       393 lyVad~~n~~Ir~  405 (409)
T 3hrp_A          393 YWIAEAWGKAIRK  405 (409)
T ss_dssp             EEEEESTTCEEEE
T ss_pred             EEEEECCCCeEEE
Confidence            8887777777765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.24  E-value=4e-09  Score=95.31  Aligned_cols=231  Identities=10%  Similarity=0.030  Sum_probs=141.2

Q ss_pred             cCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          232 DYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ........|+++++. +++. .++.|..|+.. ++.  .       .+..+...+..+++++++ +++++...++.|.+|
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~-------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--D-------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRS  112 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--E-------EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--E-------EEeCCCCccceeeECCCC-CEEEEECCCCEEEEE
Confidence            344678999999984 4555 68999999884 332  1       122345668999999998 777665566889999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE----Ee--------------CCeEEEEEccCC
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDINMD  371 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~----~~--------------~~~v~iwd~~~~  371 (513)
                      |.. +..     ..+.....       ......+..++++|+|.+.++    |.              .+.|..||... 
T Consensus       113 ~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-  178 (305)
T 3dr2_A          113 DAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-  178 (305)
T ss_dssp             CTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-
T ss_pred             CCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-
Confidence            975 432     11111000       001134678999999998886    32              14566666543 


Q ss_pred             CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------CcEEEEecCCCCccc--eee-cCCCCc
Q 010287          372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TTL-EASKNP  442 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~-~~~~~~  442 (513)
                      ++... +. ....               ...++|+||++.|+.+...      +.|++|++..+. ..  ..+ ......
T Consensus       179 g~~~~-~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          179 SPLQR-MA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL  240 (305)
T ss_dssp             CCCEE-EE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC
T ss_pred             CcEEE-Ee-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC
Confidence            33322 22 1111               1378999999988777654      789999987542 11  111 112233


Q ss_pred             eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      ...+++.++|++.++. .++ |.++.....    .. ..+.....+..++|+|+++.|.+++.++++.+.
T Consensus       241 pdgi~~d~~G~lwv~~-~~g-v~~~~~~g~----~~-~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          241 PDGFCVDRGGWLWSSS-GTG-VCVFDSDGQ----LL-GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             CCSEEECTTSCEEECC-SSE-EEEECTTSC----EE-EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CCeEEECCCCCEEEec-CCc-EEEECCCCC----EE-EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            4578899999955544 555 444211100    00 111123358999999999999988888887664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=3.2e-10  Score=103.99  Aligned_cols=179  Identities=9%  Similarity=0.118  Sum_probs=121.0

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceee--ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      .+..+++++...++++|+...+++|++........  -.+..+.....+.. |+.++|  ++ ++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence            58889999999999998655777898764331100  00011111223556 999999  76 788887 8899999999


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-eCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++.....    ..            ..|...+.++.+.+..  ++++ ++|.|.+||+.. +....    +..       
T Consensus       114 ~sl~~~~----~~------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~-------  163 (388)
T 1xip_A          114 EELSEFR----TV------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQ-------  163 (388)
T ss_dssp             SSTTCEE----EE------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEE-------
T ss_pred             hhhhccC----cc------------ceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccC-------
Confidence            8754211    11            1222457777666542  5555 459999999985 44332    111       


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-ceee------c---CCCCceeEEEEcCCCCceee
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL  457 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~~  457 (513)
                              .|.+++|||+|  ++.|..||.+++|+...+... ..++      .   +|...|.++.|.+++.++++
T Consensus       164 --------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          164 --------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             --------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             --------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence                    15699999999  678899999999988866321 2334      2   36788999999999998876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.22  E-value=1.1e-09  Score=100.10  Aligned_cols=264  Identities=11%  Similarity=0.092  Sum_probs=145.0

Q ss_pred             EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCccccccc
Q 010287           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKS  108 (513)
Q Consensus        40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~  108 (513)
                      .+++||||+++++++          .++.|.+||..+.+.+                       ..+. +...      .
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-----------------------~~I~v~~g~------r  132 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-----------------------ADIELPDAP------R  132 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCC------C
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-----------------------EEEECCCcc------c
Confidence            399999999887765          3568999998776532                       1110 0000      0


Q ss_pred             ccccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      ......-..+.|  ++|+++++++..  ++.|.++|+.+++............ ..       +.....-.+.++||+.+
T Consensus       133 ~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~-~~-------P~g~~~~~~~~~DG~~~  202 (386)
T 3sjl_D          133 FLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-IF-------PTAPDTFFMHCRDGSLA  202 (386)
T ss_dssp             CCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-EE-------EEETTEEEEEETTSCEE
T ss_pred             cccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce-ee-------cCCCceeEEECCCCCEE
Confidence            000023567888  558888888753  6899999999998776654321100 00       00000012344555433


Q ss_pred             ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe-EEEEec-cCCCEEEEEcCCeEEEEEcCCCc
Q 010287          187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI-NSISNN-SDGETFISADDLRINLWNLEISN  264 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~-~~~~~l~s~~d~~i~vwd~~~~~  264 (513)
                                            +.++........ ... .........+ ....|. ++|++++.+.+|+|.+.|+....
T Consensus       203 ----------------------~v~~~~~g~v~~-~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          203 ----------------------KVAFGTEGTPEI-THT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             ----------------------EEECCSSSCCEE-EEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             ----------------------EEECCCCCeEEE-eec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence                                  333322111000 000 0000011111 123553 67877777778999999997544


Q ss_pred             ce-eeeccc-Cc--cccccccCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCC
Q 010287          265 QS-FNIVDV-KP--ANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       265 ~~-~~~~~~-~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      .. ...+.+ ..  ............+.++|++..++++...         ...|.++|+.+++.    ++.+...    
T Consensus       259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~vg----  330 (386)
T 3sjl_D          259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEMG----  330 (386)
T ss_dssp             CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE----
T ss_pred             ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEECC----
Confidence            21 111100 00  0000112233457779988444444321         25799999999876    3333332    


Q ss_pred             CccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeeccccc
Q 010287          332 TRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                               ..+.+|.++||++ +|++..  ++.|.++|..+ ++.+.++......
T Consensus       331 ---------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p  376 (386)
T 3sjl_D          331 ---------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG  376 (386)
T ss_dssp             ---------EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred             ---------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence                     3578999999997 666654  39999999997 8888888665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=1.3e-08  Score=92.88  Aligned_cols=186  Identities=12%  Similarity=0.075  Sum_probs=112.4

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC------CCcEE
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIR  307 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~  307 (513)
                      .+.+++++++++++++..+ .|.+||..++... .+....   .......+.++.++|++ +++++...      .+.|.
T Consensus        91 ~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           91 MGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             CEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEE
T ss_pred             cceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEE
Confidence            4788999999988776644 4999998765432 111100   00112458899999998 66654432      23444


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc-CCC-CCe--eeeecc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN-MDS-GPV--ATFQVH  381 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~-~~~-~~~--~~~~~~  381 (513)
                      .++  +++.     ..+..            .......++|+|+++.++.++ . +.|.+||+. ..+ ...  ..+...
T Consensus       165 ~~~--~g~~-----~~~~~------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~  225 (326)
T 2ghs_A          165 HVA--KGKV-----TKLFA------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  225 (326)
T ss_dssp             EEE--TTEE-----EEEEE------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             EEe--CCcE-----EEeeC------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence            444  3332     11111            113467899999998776654 3 899999985 113 211  111100


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc-CCCCceeee
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSRPLG  458 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  458 (513)
                      ....            .....++++++|++.++...++.|.+|+.. + .....+..+...+.+++|. ++++.|..+
T Consensus       226 ~~~~------------~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          226 TGIK------------GGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             TTSS------------SEEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCC------------CCCCeeEECCCCCEEEEEeCCCEEEEECCC-C-CEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence            0000            002378899999887777677889999984 4 3445566666678899998 887766443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=4.3e-08  Score=90.75  Aligned_cols=293  Identities=7%  Similarity=-0.098  Sum_probs=161.9

Q ss_pred             cCCCceEEEeec--CC---eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       123 ~~~~~~l~s~s~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      .+++..++++..  ..   +|.++|..+++........                ..+ .++++|||+.+.+......  -
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g----------------~~p-~i~~spDg~~lyv~n~~~~--~   89 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----------------FLP-NPVAAHSGSEFALASTSFS--R   89 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC----------------CCC-CeEECCCCCEEEEEecccc--c
Confidence            345566666542  22   8899999988765433221                123 7899999998733211000  0


Q ss_pred             CcCCCCCCceeceeeccCCccccccee--eEeeccccCCeEEEEeccCCCEEEEE--c-CCeEEEEEcCCCcceeeeccc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCR--RIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~--~-d~~i~vwd~~~~~~~~~~~~~  272 (513)
                      ...+..++.+.++|....+........  ..+.  +......++|+|||++|+.+  . ++.|.++| .+++....++  
T Consensus        90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i--  164 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL--  164 (373)
T ss_pred             cccCCCCCeEEEEECCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc--
Confidence            000123567888888654432211100  0000  01234578999999999987  3 57899999 8665432201  


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                         ..   .   .++.+.|+++..+++.+.||.+.++|. +++....    .....      .+.+.........+.+++
T Consensus       165 ---~~---~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          165 ---SS---P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------MLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ---CC---C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cccCCcceeecceeEecC
Confidence               11   1   135566777677888889999999999 7664311    00000      000000112334567765


Q ss_pred             CE-EEEEeCCeEEEEEccCCC-CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC----------CCc
Q 010287          353 RH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------SNL  420 (513)
Q Consensus       353 ~~-l~~~~~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~  420 (513)
                      .. ++....+.+.+.|+.... ..+..+......... ..    ........+.++||++.|+++..          ++.
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~-~~----~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA-DT----WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc-cc----eecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            44 444444889999986411 112222111100000 00    00001124789999998877643          357


Q ss_pred             EEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeec-CCCeEEE
Q 010287          421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRR  466 (513)
Q Consensus       421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~~  466 (513)
                      |.++|+.++ +....+.... ....+.++|+++ .++++. .++.|.+
T Consensus       300 V~VID~~t~-~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~V  345 (373)
T 2mad_H          300 VTSVTGLVG-QTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHI  345 (373)
T ss_pred             EEEEECCCC-EEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence            999999987 3434454322 467999999999 677766 4888888

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=7.6e-09  Score=96.33  Aligned_cols=260  Identities=7%  Similarity=0.017  Sum_probs=147.0

Q ss_pred             eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      .+.++  +|++.++++.          .++.|.++|..+++......+.......        ....+..+.++|||+.+
T Consensus       122 gia~S--pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g~~P~~~~~spDGk~l  191 (426)
T 3c75_H          122 HPVAA--EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VGTYQWMNALTPDNKNL  191 (426)
T ss_dssp             EEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGSEECTTSSEE
T ss_pred             ceEEC--CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cCCCcceEEEcCCCCEE
Confidence            78884  5888888775          4778999999998776554432000000        00123367899999987


Q ss_pred             ccccCCCCCCCCcCCC--CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCC
Q 010287          187 ERNFGCASNDSSFPPG--GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI  262 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~  262 (513)
                                  +..+  ..+.+.+.|+...+......      .+.     +....|++ ..+++. .||++.+.+..+
T Consensus       192 ------------yV~n~~~~~~VsVID~~t~kvv~~I~------v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          192 ------------LFYQFSPAPAVGVVDLEGKTFDRMLD------VPD-----CYHIFPASPTVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             ------------EEEECSSSCEEEEEETTTTEEEEEEE------CCS-----EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred             ------------EEEecCCCCeEEEEECCCCeEEEEEE------cCC-----ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence                        3332  25678888876654321110      000     12223332 333333 577777777743


Q ss_pred             CcceeeecccCccccccccCCe-EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287          263 SNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  341 (513)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (513)
                      ++..... .   ..+.....++ ..+.+.+++ ..++..+..+.+.+.|+.......  ...+.........  ......
T Consensus       249 ~~v~~~~-~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~i~--~g~~p~  319 (426)
T 3c75_H          249 GETKVTN-T---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAERA--DDWRPG  319 (426)
T ss_dssp             TCCEEEE-C---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTTGG--GTEEEC
T ss_pred             CcEEEEe-e---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccccc--cccccC
Confidence            3322110 0   0011111111 235678888 555555778999999986544211  1111100000000  000001


Q ss_pred             cEEEEEEeecCCEEEEEe-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287          342 SISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG  410 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  410 (513)
                      ....++++|++..+++..           .+.|.++|..+ .+.+.++......                ..+.|+||++
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~  382 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAE  382 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSS
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCC
Confidence            222368999988777642           14799999997 8888887654432                2899999999


Q ss_pred             -EEEEEe-CCCcEEEEecCCCCccceee
Q 010287          411 -RVATGS-YSNLFRVFGCSEGSAESTTL  436 (513)
Q Consensus       411 -~l~~~~-~dg~i~vwd~~~~~~~~~~~  436 (513)
                       .+++.. .++.|.++|+.+++ ....+
T Consensus       383 ~~lyv~n~~s~~VsVID~~t~k-vv~tI  409 (426)
T 3c75_H          383 PLLYALSAGTQTLHIYDAATGE-ELRSV  409 (426)
T ss_dssp             CEEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred             EEEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence             888877 58999999999884 33443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=2.5e-09  Score=108.23  Aligned_cols=237  Identities=11%  Similarity=0.097  Sum_probs=142.1

Q ss_pred             cccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287          230 AHDYHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK  303 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  303 (513)
                      +|...+..++|||||++|+.+ +     ...|++||+.+++....       .+..  .....++|+ |+ +.|+.++.+
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~~--~k~~~~~Ws-Dg-~~l~y~~~~  194 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLKD--VKFSGISWL-GN-EGFFYSSYD  194 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEEE--EESCCCEEE-TT-TEEEEEESS
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccCC--ceeccEEEe-CC-CEEEEEEec
Confidence            344568889999999999854 2     25799999998764321       1111  112467899 98 777777776


Q ss_pred             C-------------cEEEEEcCCcccccccceeeccccCCCCcccccc-ccccEEEEEEeecCCEEEEE-e---C-CeEE
Q 010287          304 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK  364 (513)
Q Consensus       304 g-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~-~---~-~~v~  364 (513)
                      .             .|++|++.+......  ..+...          . |...+.++.|+|||++|+.. .   . ..|+
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~~----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGAI----------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLY  262 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCE--EEESCS----------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccce--EEEecC----------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence            4             388999877553221  122211          1 22357789999999988752 2   2 5899


Q ss_pred             EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CC---CcEEEEecCCCCcc-ceeecCC
Q 010287          365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS---NLFRVFGCSEGSAE-STTLEAS  439 (513)
Q Consensus       365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---g~i~vwd~~~~~~~-~~~~~~~  439 (513)
                      ++|+.........+..+....               ... ++++|..|+..+ .+   +.|..+++.++... ...+..+
T Consensus       263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~  326 (693)
T 3iuj_A          263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE  326 (693)
T ss_dssp             EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence            999976333445554443321               122 667776665443 33   67899999876431 2345555


Q ss_pred             CCceeEEEEcCCCCceeeecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-C----CcEE
Q 010287          440 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-S----NSLY  509 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~----~~~~  509 (513)
                      ...+.  .++++++.|+.... ++.  |++.  .+....  .+   .+.....+..++++|+++.|+... +    ..++
T Consensus       327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~  399 (693)
T 3iuj_A          327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY  399 (693)
T ss_dssp             CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred             CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence            55554  88999998876654 443  4442  111111  01   112245677888899988777443 2    4555


Q ss_pred             EEe
Q 010287          510 MYY  512 (513)
Q Consensus       510 i~~  512 (513)
                      .|+
T Consensus       400 ~~d  402 (693)
T 3iuj_A          400 RFE  402 (693)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=1.2e-07  Score=87.12  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             EEEeccCCCEEEEEc--------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eCCCC
Q 010287          237 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC  294 (513)
Q Consensus       237 ~~~~~~~~~~l~s~~--------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~  294 (513)
                      .+.|+|+++.+++++                    +.+|.+||+.+.+ ....+     .+.........+.|  +|++.
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI-----~vg~~g~~P~~i~f~~~Pdg~  265 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSL-----TLGEENRMALELRPLHDPTKL  265 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEE-----ESCTTEEEEEEEEECSSTTCC
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEE-----ecCCCCCccceeEeeECCCCC
Confidence            466788888888773                    7899999998653 33322     12111233456656  99994


Q ss_pred             eEEEEEe-----CCCcEEEEEcCCcccccccceeeccccCC--CCc----cccccccccEEEEEEeecCCEEEEEeC--C
Q 010287          295 NMLAYSS-----SKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTR----SFFTEIIASISDIKFARNGRHILSRDY--M  361 (513)
Q Consensus       295 ~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~v~~i~~sp~~~~l~~~~~--~  361 (513)
                      ..++++-     .+++|.+|....+...  ....++.....  ...    .-+.+.......|.+||||++|.++..  +
T Consensus       266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d  343 (462)
T 2ece_A          266 MGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG  343 (462)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred             EEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence            4455555     6778988776543321  11222111100  000    000111235788999999999998774  9


Q ss_pred             eEEEEEccCCCC--Ceeeeeccccccccccc---ccccCCccceeeEEEeCCCCEEEEEe
Q 010287          362 TLKLWDINMDSG--PVATFQVHEHLRPKLCD---LYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       362 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      .|.+||+...+.  .+..+...... .....   ..-....   ..+.++|||++|+++.
T Consensus       344 ~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggP---r~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          344 EVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAP---QMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCC---CCEEECTTSSEEEEEC
T ss_pred             EEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCC---CEEEEcCCCCEEEEEc
Confidence            999999863232  22222221000 00000   0000001   2789999999999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=7.8e-08  Score=88.34  Aligned_cols=254  Identities=7%  Similarity=-0.042  Sum_probs=146.0

Q ss_pred             CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-----CC
Q 010287          233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG  304 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg  304 (513)
                      ..+..++++++++.+++.   .++.++||.+.++ .....-... .....+...+..+++++++ +++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            568899999999999986   2453556665433 222110000 1122455789999999998 76665443     57


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE-EEEe---C-CeEEEEEccCCCCCeeeee
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD---Y-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l-~~~~---~-~~v~iwd~~~~~~~~~~~~  379 (513)
                      .|.+||+.+++.    .+.+..+...      ..+...+..++++|++..+ ++..   . +.|.+||+.. ++..+.+.
T Consensus        94 ~i~~~d~~tg~~----~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~  162 (343)
T 2qe8_A           94 KLVAWDTLNNQL----SRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ  162 (343)
T ss_dssp             EEEEEETTTTEE----EEEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred             eEEEEECCCCeE----EEEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence            899999988774    2333322110      1122456889999865444 4533   3 8999999985 55555443


Q ss_pred             cccccccc-----cc--ccc---ccCC----ccceeeEEEeCCCCEEEEEeCCC-cEEEEecCC---CC----ccce--e
Q 010287          380 VHEHLRPK-----LC--DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCSE---GS----AEST--T  435 (513)
Q Consensus       380 ~~~~~~~~-----~~--~~~---~~~~----~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~---~~----~~~~--~  435 (513)
                      .|......     ..  .++   ....    ......++|+||++.|+.+..++ .++.++...   +.    ....  .
T Consensus       163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE  242 (343)
T ss_dssp             TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred             CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence            32211100     00  000   0000    01245799999999888877665 454444321   10    0000  1


Q ss_pred             ecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          436 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       436 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ..++......++++++|.++++...++.|.+...  .+..   ... .......+..++|.++++++++.+
T Consensus       243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~---~~~-~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK---LLV-TDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE---EEE-ECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE---EEE-ECCceecCCeeEECCCCcEEEEeC
Confidence            1123334557899999999888888888887332  1111   010 011245689999999998877765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=1.8e-08  Score=93.77  Aligned_cols=258  Identities=10%  Similarity=0.083  Sum_probs=140.6

Q ss_pred             EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+++||||++|+++.          .++.|.++|..+.+.+..                     ..+.+-. .      .
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~---------------------I~v~g~~-r------~  173 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD---------------------IELPDAP-R------F  173 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE---------------------EEETTCC-C------C
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE---------------------EECCCcc-c------c
Confidence            799999999888776          367899999876653200                     0011000 0      0


Q ss_pred             cccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      ........+.|  ++|+++++++..  ++.|.+.|+.+++........... ...       +.....-+.++++|+.+ 
T Consensus       174 ~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~-~~~-------p~g~~~~v~~~~dG~~~-  242 (426)
T 3c75_H          174 LVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY-HIF-------PASPTVFYMNCRDGSLA-  242 (426)
T ss_dssp             CBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEE-------EEETTEEEEEETTSSEE-
T ss_pred             ccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce-eec-------cCCCcEEEEEcCCCCEE-
Confidence            00022456778  558889988864  688999999998876654432100 000       00000012334444432 


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCC-eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~  265 (513)
                                           +.+...........  .. +.....+ ...+.+.+++..++.. ..+.+.+.|......
T Consensus       243 ---------------------~V~~~~~~v~~~~~--~~-~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~  298 (426)
T 3c75_H          243 ---------------------RVDFADGETKVTNT--EV-FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA  298 (426)
T ss_dssp             ---------------------EEECCTTCCEEEEC--CC-CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred             ---------------------EEECCCCcEEEEee--ee-eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence                                 22221111000000  00 0000011 1235678887776665 678999999864432


Q ss_pred             ee-eecccCc-cc--cccccCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCCC
Q 010287          266 SF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPGT  332 (513)
Q Consensus       266 ~~-~~~~~~~-~~--~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  332 (513)
                      .. ..+.+.. ..  ..........+.++|++.+++++...         ++.|.++|+.+.+.    +..+...     
T Consensus       299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv----v~~I~vg-----  369 (426)
T 3c75_H          299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER----INKIELG-----  369 (426)
T ss_dssp             EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE-----
T ss_pred             EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE----EEEEECC-----
Confidence            11 1000000 00  00011122236899998455555432         35799999998876    3333332     


Q ss_pred             ccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeee
Q 010287          333 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF  378 (513)
Q Consensus       333 ~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~  378 (513)
                              .....+.|+||++ ++++..  ++.|.++|+.+ .+.+.++
T Consensus       370 --------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI  409 (426)
T 3c75_H          370 --------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV  409 (426)
T ss_dssp             --------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred             --------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence                    2478899999999 888866  39999999997 7877776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=1e-07  Score=95.68  Aligned_cols=191  Identities=8%  Similarity=0.015  Sum_probs=114.4

Q ss_pred             EEEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCccccccc-------cCCeEEEE
Q 010287          236 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAE  288 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~  288 (513)
                      ..+++++++..++.+ .++                   .|..+|.++++......      ...|       .....-+.
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~  319 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILAD  319 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEe
Confidence            357888888888876 443                   59999999888765531      1112       11222333


Q ss_pred             EeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCC-------CCc--------------cc---ccccccc
Q 010287          289 FHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-------GTR--------------SF---FTEIIAS  342 (513)
Q Consensus       289 ~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~---~~~~~~~  342 (513)
                      ...+|.  ..++.++.+|.+.++|.++++.....    .....+       ...              ..   ..+... 
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-  394 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK----NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-  394 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE----ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECCCCCEeccc----cccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-
Confidence            334552  47888999999999999999874321    100000       000              00   001111 


Q ss_pred             EEEEEEeecCCEEEEEe-------------------------------------------C-CeEEEEEccCCCCCeeee
Q 010287          343 ISDIKFARNGRHILSRD-------------------------------------------Y-MTLKLWDINMDSGPVATF  378 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~-------------------------------------------~-~~v~iwd~~~~~~~~~~~  378 (513)
                      -..++++|++.++++..                                           . +.|..||+.+ ++.+-.+
T Consensus       395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~  473 (677)
T 1kb0_A          395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSV  473 (677)
T ss_dssp             SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEE
T ss_pred             CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeec
Confidence            13578899887777632                                           1 6788899886 6666555


Q ss_pred             ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCce
Q 010287          379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSR  455 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l  455 (513)
                      .....                +....+..++..++.++.||.+++||..+++.+ ..+. ++......+.+..+|+.+
T Consensus       474 ~~~~~----------------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          474 EHVSP----------------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EESSS----------------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCCC----------------CcCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEE
Confidence            43221                114456678888999999999999999998443 4443 332233345666777644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=2.6e-07  Score=85.03  Aligned_cols=233  Identities=11%  Similarity=0.076  Sum_probs=139.0

Q ss_pred             cCCCEEEEE--cCCeEEEEEcCCCcceeeecc-cCccccc-c-ccCCeEEEEEeCCCCeEEEEEeCC------CcEEEEE
Q 010287          242 SDGETFISA--DDLRINLWNLEISNQSFNIVD-VKPANME-D-LTEVITSAEFHPTHCNMLAYSSSK------GSIRLID  310 (513)
Q Consensus       242 ~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~-~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~d------g~i~vwd  310 (513)
                      .+.++|+..  .+++|.++|..+.....++.. +.|..+. . .......+...|++  +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            778888875  599999999975432222211 1111111 1 12245678888998  55555555      7899999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--------------------CCeEEEEEccC
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------YMTLKLWDINM  370 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--------------------~~~v~iwd~~~  370 (513)
                      ..+.+.    +..+.....+.         ..-..+-|+|+++.+++..                    ..+|.+||+..
T Consensus       171 ~~T~~v----~~~~~~~~~~~---------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          171 HYSFEP----LGKWEIDRGDQ---------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             TTTCCE----EEECCSBCTTC---------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             CCCCeE----EEEEccCCCCc---------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            998876    34444221110         1234578899999999874                    38999999986


Q ss_pred             CCCCeeeeecccccccccccccccCCccceeeEEE--eCCCCEEEEEe------CCCcEEEEecCCCCccc-eee--cC-
Q 010287          371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGS------YSNLFRVFGCSEGSAES-TTL--EA-  438 (513)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~------~dg~i~vwd~~~~~~~~-~~~--~~-  438 (513)
                       ++.+.++........             -..+.|  +|++++++++.      .+++|.+|....+.... +.+  .. 
T Consensus       238 -~k~~~tI~vg~~g~~-------------P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~  303 (462)
T 2ece_A          238 -RKRIHSLTLGEENRM-------------ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE  303 (462)
T ss_dssp             -TEEEEEEESCTTEEE-------------EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred             -CcEeeEEecCCCCCc-------------cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence             666766655311000             013444  99999888766      46688777655431110 111  10 


Q ss_pred             ---------------CCCceeEEEEcCCCCceeeecC-CCeEEEecCCCCCccccCCcccccc---------------CC
Q 010287          439 ---------------SKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFS---------------MK  487 (513)
Q Consensus       439 ---------------~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~---------------~~  487 (513)
                                     .......+.+++|+++|.++.. .+.|.++.-.......+.. .....               ..
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~-~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG-KVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE-EEECBTTTTCBCCTTSCCCCSC
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-EEEeCCeeccccccccccCCCC
Confidence                           0134568999999999876644 6777773322111111111 11111               13


Q ss_pred             eeEEEEeCCCCEEEEEc
Q 010287          488 LLHLAWHPSENSIACAA  504 (513)
Q Consensus       488 i~~~~~sp~~~~la~~~  504 (513)
                      ...++++|||++|.++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            68899999999999876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.91  E-value=2.4e-07  Score=84.78  Aligned_cols=257  Identities=9%  Similarity=0.006  Sum_probs=142.0

Q ss_pred             eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287          117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (513)
Q Consensus       117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (513)
                      .+.++  +++++++++.          .++.|.+||+.+++..............        ....+..++++|||+++
T Consensus        69 ~i~~s--pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--------~g~~P~~ia~SpDGk~l  138 (368)
T 1mda_H           69 LAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--------VGPRVHIIGNCASSACL  138 (368)
T ss_dssp             EEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--------BSCCTTSEEECTTSSCE
T ss_pred             ceEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc--------cCCCcceEEEcCCCCEE
Confidence            68884  5888888875          4789999999999877665443110000        00123378999999987


Q ss_pred             ccccCCCCCCCCcCCC--CCCceec--eeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEc
Q 010287          187 ERNFGCASNDSSFPPG--GVSSLRL--PVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL  260 (513)
Q Consensus       187 ~~~~~~~~~~~~~~~~--~~~~i~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~  260 (513)
                                  +...  ....+.+  +|...  .       .....+  +   +..+.|+++..+.+  .|+.+.+.++
T Consensus       139 ------------yVan~~~~~~v~V~~iD~~t--v-------~~i~v~--~---~~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          139 ------------LFFLFGSSAAAGLSVPGASD--D-------QLTKSA--S---CFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             ------------EEEECSSSCEEEEEETTTEE--E-------EEEECS--S---CCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             ------------EEEccCCCCeEEEEEEchhh--c-------eEEECC--C---ceEEccCCCeEEEEEcCCCCEEEEEC
Confidence                        3332  2345666  76644  0       000001  0   11233444433333  5888888888


Q ss_pred             CC----CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccc
Q 010287          261 EI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  336 (513)
Q Consensus       261 ~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ++    .........   ..+.-...+.   . .+++ ..++..+. +.+.+.|+.+.....  ...+......   ...
T Consensus       193 ~~~~~~~~~v~~~~t---~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~---~~~  258 (368)
T 1mda_H          193 AAAPAAAGIVGAQCT---GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESG---RKA  258 (368)
T ss_dssp             CSSCCCCEECCCCSC---TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTH---HHH
T ss_pred             ccccccCCeEEEEee---eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceE--EEEEEecccc---ccc
Confidence            75    222210000   0111122333   3 6666 44555556 999999986532100  1111110000   000


Q ss_pred             cc-ccccEEEEEEeecCCEEEEE-e---------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          337 TE-IIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       337 ~~-~~~~v~~i~~sp~~~~l~~~-~---------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      .+ .......+.++|+++.++.+ .         .+.+.++|+.+ .+.+..+......                ..+.|
T Consensus       259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~  321 (368)
T 1mda_H          259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIA  321 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEE
T ss_pred             cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEE
Confidence            00 00112226899999877753 2         22566999997 7777777655432                37999


Q ss_pred             eCCCCE-EEEEe-CCCcEEEEecCCCCccceeecCCCC
Q 010287          406 SGDGGR-VATGS-YSNLFRVFGCSEGSAESTTLEASKN  441 (513)
Q Consensus       406 s~~~~~-l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~  441 (513)
                      +|||+. +++.. .++.|.++|+.++ +...+++....
T Consensus       322 s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~  358 (368)
T 1mda_H          322 AQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG  358 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC
T ss_pred             CCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC
Confidence            999984 55666 5899999999988 44455554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.89  E-value=7.6e-07  Score=89.50  Aligned_cols=199  Identities=12%  Similarity=0.045  Sum_probs=112.9

Q ss_pred             EEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCccccc--cccCCeEEEEEeCCCC
Q 010287          237 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTHC  294 (513)
Q Consensus       237 ~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~  294 (513)
                      .++++++...++.+ .++                   .|..+|.++++........ +...-  .....+.......++.
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCCc
Confidence            57888888888887 554                   4999999998876643110 00000  0112222223333441


Q ss_pred             --eEEEEEeCCCcEEEEEcCCcccccccce---eeccc------------------cCCCCcccc---ccccccEEEEEE
Q 010287          295 --NMLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQ------------------EAPGTRSFF---TEIIASISDIKF  348 (513)
Q Consensus       295 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~------------------~~~~~~~~~---~~~~~~v~~i~~  348 (513)
                        ..++.++.+|.++++|.++++.......   .+...                  .........   .+.. ....+++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~-~w~~~a~  396 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH-DWQPMSY  396 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS-CSSCCEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc-CCCcceE
Confidence              2788899999999999999987421100   00000                  000000000   0000 1233788


Q ss_pred             eecCCEEEEEe----------------------------------------------CCeEEEEEccCCCCCeeeeeccc
Q 010287          349 ARNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHE  382 (513)
Q Consensus       349 sp~~~~l~~~~----------------------------------------------~~~v~iwd~~~~~~~~~~~~~~~  382 (513)
                      +|+..++++..                                              +|.|..||+.+ ++.+-.+..+.
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~  475 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT  475 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence            88877777531                                              15688888876 66665554433


Q ss_pred             ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCce
Q 010287          383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSR  455 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  455 (513)
                      ..                ..-.+...+.+++.++.||.|+.||.++++. +-.++.. ......+.+..+|+..
T Consensus       476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCcccCceEEEECCEEE
Confidence            21                1235666788999999999999999999844 3344332 2222345666776643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=100.73  Aligned_cols=144  Identities=8%  Similarity=0.024  Sum_probs=69.7

Q ss_pred             cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287          242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  320 (513)
Q Consensus       242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  320 (513)
                      .++..++++ .|+.|+.||.++++...... ....... ...++    +. .+ ..+++++.|+.+..||.++|+...+ 
T Consensus        47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~-  117 (369)
T 2hz6_A           47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQT-  117 (369)
T ss_dssp             ---CCEEECTTTCCEEEC-----CCSEECS-CCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred             cCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEE-
Confidence            456667776 79999999998776543320 0000000 01111    11 23 4677888899999999999886432 


Q ss_pred             ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287          321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                         +...             .   ...++|++..+++++. +.|+.||.++ ++.+..+......               
T Consensus       118 ---~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~---------------  162 (369)
T 2hz6_A          118 ---LSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA---------------  162 (369)
T ss_dssp             ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred             ---ecCC-------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence               2111             0   1345567777777664 9999999987 6665554432211               


Q ss_pred             eeeEEEeCCC---CEEEEEeCCCcEEEEecCCCCc
Q 010287          400 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       400 v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                        ...++++.   ..+++++.||.|+.||..+++.
T Consensus       163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             --CccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence              22333332   4577788899999999998843

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=0.00011  Score=75.78  Aligned_cols=255  Identities=10%  Similarity=0.058  Sum_probs=143.4

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..|.++...++|.+.+...+ -|.+|+..+...  ..+...+ ....-....|.++...+++ . |-.|+.++-|..|+.
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence            34888988888887776655 588898775432  1111100 0011124679999999987 4 445677788888987


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      .+...     ..+.......     .-....|.++...++|.+.+...++-|..|+..+ + ....+........  ..+
T Consensus       338 ~~~~~-----~~~~~~~~~~-----~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~--~~l  403 (795)
T 4a2l_A          338 IRNRF-----KNIRNIPYKN-----SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-Q-RFTSYTLQEDESA--RGI  403 (795)
T ss_dssp             GGGSS-----EEECCCTTSS-----SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-C-CEEEECCC--------CC
T ss_pred             Ccccc-----eEEcCCCCCC-----CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-C-cEEEEecCCCCcc--cCC
Confidence            65432     1121110000     0012469999988888866654456789998764 2 2333321110000  000


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee---cCCCCceeEEEEcCCCCceeeecCCCeEEEe-
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-  467 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~-  467 (513)
                          .-..|.++...++++.|..|+.++-|..||..++.......   ......|.++...+++.+.+... +|..++- 
T Consensus       404 ----~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~  478 (795)
T 4a2l_A          404 ----GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNP  478 (795)
T ss_dssp             ----SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEET
T ss_pred             ----CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeC
Confidence                00125578888888856667777779999988763221111   02345688888888887655544 6655551 


Q ss_pred             cCCCCCccccCCc-cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          468 KGADNSALDANGN-AFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       468 ~~~~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      +............ ..-....|.++...+++++.+... ++++.|.
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~  523 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK  523 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence            1111110000000 001236799999999998777555 7888774

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.82  E-value=4.4e-06  Score=77.79  Aligned_cols=182  Identities=10%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287          246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  323 (513)
Q Consensus       246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  323 (513)
                      .++.+ .++.|..+|.++++...+.....+ .......    ..... +  ..++.++.++.+..+|..+++...+    
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~----  213 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQ----  213 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEE-T--TEEEECCTTTEEEEEETTTCCEEEE----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEE----
Confidence            45555 788999999988876654311000 0000011    11222 3  3567788899999999998876432    


Q ss_pred             eccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          324 FEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                      ........... +    ..+..+.-.|  .+..++.++ ++.+..+|..+ ++.+........                 
T Consensus       214 ~~~~~~~~~~~-~----~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~-----------------  270 (376)
T 3q7m_A          214 QRISQATGSTE-I----DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV-----------------  270 (376)
T ss_dssp             EECCC----------------CCCCCCEEETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE-----------------
T ss_pred             EecccCCCCcc-c----ccccccCCCcEEECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC-----------------
Confidence            11110000000 0    0000000111  245555555 58999999986 665544432110                 


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ..+..  ++..|+.++.++.|..+|..+++.+ -... ...........  .+..|..++.+|.+..
T Consensus       271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHW  332 (376)
T ss_dssp             EEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTTTSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred             CCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccCCCcccCCEE--ECCEEEEEeCCCeEEE
Confidence            12232  4667888888999999999988433 2222 11122222222  2456777788887777

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=2e-05  Score=69.25  Aligned_cols=175  Identities=11%  Similarity=0.054  Sum_probs=101.3

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC--CCcEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI  309 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~vw  309 (513)
                      ....+++++++..|+.+  ..+.|.++++..... ..+.       .........++++|++..++++...  .+.|..+
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            36789999976666655  478999999874322 1111       1112457899999965355555433  4688888


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      ++.....     ..+...           .......++++|++..|+.++.  +.|.++|... ......+.....    
T Consensus       152 ~~dg~~~-----~~~~~~-----------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~----  210 (267)
T 1npe_A          152 HMDGTNR-----RILAQD-----------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY----  210 (267)
T ss_dssp             ETTSCCC-----EEEECT-----------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS----
T ss_pred             ecCCCCc-----EEEEEC-----------CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCC----
Confidence            8653221     111100           0135788999998887776653  8999999863 221111111010    


Q ss_pred             cccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCC
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR  452 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~  452 (513)
                                  -..++..  +..|+ +...++.|..+|..+++ ....+.... .....+++.|++
T Consensus       211 ------------P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~-~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          211 ------------PFAVTSY--GKNLYYTDWKTNSVIAMDLAISK-EMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ------------EEEEEEE--TTEEEEEETTTTEEEEEETTTTE-EEEEECCSSCCCCCCEEEECSC
T ss_pred             ------------ceEEEEe--CCEEEEEECCCCeEEEEeCCCCC-ceEEEccccccccceeeecCcc
Confidence                        1245554  44555 44466899999998773 334444322 234567777663

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.72  E-value=0.00042  Score=71.35  Aligned_cols=250  Identities=12%  Similarity=0.067  Sum_probs=142.0

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ..|.++...++|.+.+...++-|..++..+..  +..+...+..-.-....|.++...+++ .+ -.|+.++-+..||..
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g-~l-WiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDK-NL-WIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTS-CE-EEEESSSCEEEECTT
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCC-CE-EEEECCCCeEEEcCC
Confidence            45889999999987776666778889876433  111111000001124569999998887 54 447777788999987


Q ss_pred             Ccccccccceeecccc-CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++..     ..+.... .+.    ..-....|.++...+++..|..|+. +.|..||..+ ++ ...+......   +  
T Consensus       386 ~~~~-----~~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~---l--  449 (795)
T 4a2l_A          386 TQRF-----TSYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQ---L--  449 (795)
T ss_dssp             TCCE-----EEECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSC---C--
T ss_pred             CCcE-----EEEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCC---c--
Confidence            6542     1121100 000    0001246899999888884555554 7799999874 33 3333211100   0  


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                        ..   ..|.++...++|++.+. +.+ -|.+|+..++.......     ......|.++...+++.+.+... +|..+
T Consensus       450 --~~---~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~  521 (795)
T 4a2l_A          450 --VN---ENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSV  521 (795)
T ss_dssp             --SC---SCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEE
T ss_pred             --CC---CeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEE
Confidence              00   12457888888876554 444 48889987653221111     11235688888888888766554 67666


Q ss_pred             E-ecCCCCCccccC-CccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          466 R-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       466 ~-~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      + ...... ..... .........|.++...++|++.+... ++++.|+
T Consensus       522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d  568 (795)
T 4a2l_A          522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFN  568 (795)
T ss_dssp             EEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEE
T ss_pred             EeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeEC
Confidence            5 111111 00000 01111356799999999998666544 4888775

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.71  E-value=1.3e-06  Score=79.76  Aligned_cols=181  Identities=11%  Similarity=0.125  Sum_probs=109.5

Q ss_pred             eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      +.++...+++..++...++.|..+|.. ++.....        ......+.++...+++ .+++ ++  +.+..+| .++
T Consensus       139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDG  204 (330)
T ss_dssp             CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTS
T ss_pred             eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCC
Confidence            445566777776655578999999988 5543322        1123445667777776 5444 44  8889999 665


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN  394 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      ....    .+...            ...+.++...++|.+.+...++.|..+|..  +..+..+.......         
T Consensus       205 ~~~~----~~~~~------------~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~---------  257 (330)
T 3hxj_A          205 TEKW----NFYAG------------YWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE---------  257 (330)
T ss_dssp             CEEE----EECCS------------SCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC---------
T ss_pred             cEEE----EEccC------------CcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc---------
Confidence            5421    11111            134667778888776665556788888743  55554444322211         


Q ss_pred             CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          395 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       395 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                            ..+.+.+++ .|..++.+|.|..+|. ++ ............+.++...+++. |..++.+|.+.+
T Consensus       258 ------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          258 ------SSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             ------SCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred             ------ccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence                  134555555 4667788888999996 44 33334444455566777777766 455778888888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.69  E-value=7e-07  Score=85.26  Aligned_cols=101  Identities=11%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             cEEEEEEeecCCEEEEEeC--CeEEEEEccCCCC------------CeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          342 SISDIKFARNGRHILSRDY--MTLKLWDINMDSG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      ...++.++|||+++++++.  .+|.++|+.+ .+            ..........                -..++|+|
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~g----------------P~h~aF~~  340 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLG----------------PLHTAFDG  340 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSC----------------EEEEEECT
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCC----------------cceEEECC
Confidence            4677999999999998764  9999999985 21            1111111111                13789999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC---------CccceeecCCCCce-----eEEEEcCCCCceeeec
Q 010287          408 DGGRVATGSYSNLFRVFGCSEG---------SAESTTLEASKNPM-----RRQVQTPSRPSRPLGS  459 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~  459 (513)
                      +|...++.-.|+.|.+||+...         .+.+.++..|..|-     ..+..+|||++|++..
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            9943345568999999999862         13445566665543     2335589999998763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=6.6e-07  Score=81.89  Aligned_cols=255  Identities=9%  Similarity=0.033  Sum_probs=134.7

Q ss_pred             EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC-CCccccccc
Q 010287           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS  108 (513)
Q Consensus        40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~  108 (513)
                      .+.|+|||+++.++.          .++.|.+||..+.+.+                       .++... .+.+  +  
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~--~--  121 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF--S--  121 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSC--C--
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCcccc--c--
Confidence            699999999888875          3678999998876642                       111100 0000  0  


Q ss_pred             ccccccceeEEEeecCCCceEEEeec--CCeEEE--EEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  184 (513)
                        .......+.+  ++|+++++++..  +..+.+  +|+.+  . ......  .                 .....|+|+
T Consensus       122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v-~~i~v~--~-----------------~~~~~p~g~  175 (368)
T 1mda_H          122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--D-QLTKSA--S-----------------CFHIHPGAA  175 (368)
T ss_dssp             --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--E-EEEECS--S-----------------CCCCEEEET
T ss_pred             --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--c-eEEECC--C-----------------ceEEccCCC
Confidence              0012567888  458888988864  467888  88877  1 111111  0                 011223333


Q ss_pred             ccccccCCCCCCCCcCCCCCCceeceeecc-----CCcccccceeeEeeccccCCeEEEEeccCCCEEEE-EcCCeEEEE
Q 010287          185 CGERNFGCASNDSSFPPGGVSSLRLPVVTS-----QETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLW  258 (513)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~d~~i~vw  258 (513)
                      ..           .+..+.++.+.+.++..     ........  . .......+.   . .+++..++. .. +.+.+.
T Consensus       176 ~~-----------~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~-~i~vg~~P~---~-~~~~~~~~~vs~-~~V~vi  236 (368)
T 1mda_H          176 AT-----------HYLGSCPASLAASDLAAAPAAAGIVGAQCT--G-AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQG  236 (368)
T ss_dssp             TE-----------EECCCCTTSCEEEECCSSCCCCEECCCCSC--T-TSCBCSCCE---E-ETTTTEEEECBS-SCCEEE
T ss_pred             eE-----------EEEEcCCCCEEEEECccccccCCeEEEEee--e-eeeCCCCcc---c-cccCCEEEEEcC-CEEEEE
Confidence            21           02223344444444433     11100000  0 000111222   3 455554444 46 899999


Q ss_pred             EcCCCcc-eeeecccCcccccc---ccCCeEEEEEeCCCCeEEEEEe-C-------CCcEEEEEcCCcccccccceeecc
Q 010287          259 NLEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSS-S-------KGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       259 d~~~~~~-~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~-~-------dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      |...... ....+.+.......   .......+.++|++..++++.. .       ++.+.++|+.+++..    ..+..
T Consensus       237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v  312 (368)
T 1mda_H          237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN  312 (368)
T ss_dssp             ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE
T ss_pred             ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC
Confidence            9864321 11111110000000   1111122689999844444443 2       235669999988763    33332


Q ss_pred             ccCCCCccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeeccccc
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      .             .....+.|+|||+ .+++..  ++.|.++|+.+ .+.+.++.....+
T Consensus       313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence            2             2478899999997 455555  49999999997 8888877655543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.61  E-value=7.2e-06  Score=82.41  Aligned_cols=337  Identities=10%  Similarity=0.067  Sum_probs=173.0

Q ss_pred             CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (513)
Q Consensus       126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  205 (513)
                      +..+++++.++.|.-+|..+|+.+..............    .++......+++  .+..            ++.+..++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~--~~g~------------v~v~~~dg  131 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGE----ACCDAVNRGVAV--WKGK------------VYVGVLDG  131 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGG----CTTCSCCCCCEE--ETTE------------EEEECTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccc----ccccCCCCccEE--ECCE------------EEEEccCC
Confidence            34777788899999999999998877654322110000    000000001111  1222            24555677


Q ss_pred             ceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEEc------CCeEEEEEcCCCcceeeeccc--Cc
Q 010287          206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVDV--KP  274 (513)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~------d~~i~vwd~~~~~~~~~~~~~--~~  274 (513)
                      .+..+|..+++..-.....     .+......+..+|   ++..++...      ++.|+.||.++++...+....  .+
T Consensus       132 ~l~AlDa~TG~~~W~~~~~-----~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p  206 (689)
T 1yiq_A          132 RLEAIDAKTGQRAWSVDTR-----ADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP  206 (689)
T ss_dssp             EEEEEETTTCCEEEEEECC-----SCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             EEEEEECCCCCEeeeecCc-----CCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCc
Confidence            7887777665543211110     0100001111111   444444322      689999999998876654211  00


Q ss_pred             cc------c---------------ccccCCeEEEEEeCCCCeEEEEEeCCCc-------------------EEEEEcCCc
Q 010287          275 AN------M---------------EDLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLIDMRQS  314 (513)
Q Consensus       275 ~~------~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------------------i~vwd~~~~  314 (513)
                      ..      +               .++......++++|+. .+++.+..++.                   |..+|.+++
T Consensus       207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG  285 (689)
T 1yiq_A          207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG  285 (689)
T ss_dssp             TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred             ccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence            00      0               0111112367888987 77888877763                   999999999


Q ss_pred             ccccccceeeccccCCCCccccccccccEEEEEEeecCC---EEEEEeC-CeEEEEEccCCCCCeeeeecccc-cccccc
Q 010287          315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLC  389 (513)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~  389 (513)
                      +...+    ++...... .. + .....+.-.....+|+   .++.++. |.++++|.++ ++++........ ....+.
T Consensus       286 ~~~W~----~~~~~~d~-wd-~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          286 EYVWH----YQTTPGDA-WD-Y-TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             CEEEE----EESSTTCC-SC-C-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEE
T ss_pred             ceeEe----eecCCccc-cc-c-cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccC
Confidence            87543    21110000 00 0 0112222233334665   6777765 9999999987 777643322110 000000


Q ss_pred             -----------cc--cccCC----------ccceeeEEEeCCCCEEEEEeC-----------------------------
Q 010287          390 -----------DL--YENDS----------IFDKFECCLSGDGGRVATGSY-----------------------------  417 (513)
Q Consensus       390 -----------~~--~~~~~----------~~~v~~~~~s~~~~~l~~~~~-----------------------------  417 (513)
                                 ..  +....          -..-..++++|+..++++...                             
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                       00  00000          000114789998888776532                             


Q ss_pred             ----------------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe---cCCCCCccccC
Q 010287          418 ----------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV---KGADNSALDAN  478 (513)
Q Consensus       418 ----------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~---~~~~~~~~~~~  478 (513)
                                      +|.|+.||+.+++ +.-..+.+. +...-.+...+.++..|+.|+.++.+   .+..++.....
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTE-EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCC-eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                            3779999999884 333333332 23334556678888899999999992   23333422211


Q ss_pred             CccccccCCeeEEEEeCCCCEEE
Q 010287          479 GNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       479 ~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                           ......-+.|..+|+..+
T Consensus       516 -----~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          516 -----SGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             -----SCCCSCCEEEEETTEEEE
T ss_pred             -----CCcccCceEEEECCEEEE
Confidence                 122234577888887544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.59  E-value=2.3e-06  Score=77.95  Aligned_cols=210  Identities=10%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287          244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  322 (513)
Q Consensus       244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  322 (513)
                      +..+..+ .++.|..+|.. ++.....        ......+.++...+++ . +..++.++.+..+|.. ++...    
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~----  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKW----  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEE----
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeE----
Confidence            3345555 68899999987 5544322        1123334556667676 4 5567788999999987 55421    


Q ss_pred             eeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                      .+....            ..+.++...+++.+.++.  +.|..+| .. ++....+......               +.+
T Consensus       171 ~~~~~~------------~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~  219 (330)
T 3hxj_A          171 RFKTND------------AITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR  219 (330)
T ss_dssp             EEECSS------------CCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred             EEecCC------------CceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence            222111            235556666777765555  7899999 43 5555444332211               236


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CCCCccccCCc
Q 010287          403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGN  480 (513)
Q Consensus       403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~~~~~~~~~  480 (513)
                      +...++|. |..++.++.|..++.. + ............+..+.+.+++ .|..++.++.+..+..  ...+.      
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~~~------  289 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPDGTEKWN------  289 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTTSCEEEE------
T ss_pred             eEECCCCe-EEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCCCcEEEE------
Confidence            77787775 4556667788888753 3 2333333333333445555555 4555666765555221  11111      


Q ss_pred             cccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287          481 AFDFSMKLLHLAWHPSENSIACAASNSLYM  510 (513)
Q Consensus       481 ~~~~~~~i~~~~~sp~~~~la~~~~~~~~i  510 (513)
                      .......+.++...+++++.+.+.++.+.+
T Consensus       290 ~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~  319 (330)
T 3hxj_A          290 FETGSWIIATPVIDENGTIYFGTRNGKFYA  319 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEECTTSCEEE
T ss_pred             EEcCCccccceEEcCCCEEEEEcCCCeEEE
Confidence            011245577777888888666554554544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.56  E-value=1.3e-05  Score=80.36  Aligned_cols=337  Identities=9%  Similarity=-0.022  Sum_probs=172.6

Q ss_pred             ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (513)
                      ..+++++.++.|.-+|..+|+.+.............    ..++......+++  ++..            ++.+..++.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~~~~~~~~~~a~--~~~~------------v~v~~~dg~  139 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF----KGCCDVVNRGVAL--WKGK------------VYVGAWDGR  139 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG----GSSSCSCCCCCEE--ETTE------------EEEECTTSE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc----cccccCCCCCceE--ECCE------------EEEEcCCCE
Confidence            467777788999999999999887766543211000    0000000001111  2222            244556677


Q ss_pred             eeceeeccCCcccccceeeEeeccccCCeEE-EEeccCCCEEEEE-c------CCeEEEEEcCCCcceeeecccCccc--
Q 010287          207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPAN--  276 (513)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~-~------d~~i~vwd~~~~~~~~~~~~~~~~~--  276 (513)
                      +..+|..+++..........  ......+.+ ...  .+..++.+ .      ++.|+.+|.++++...+.....+..  
T Consensus       140 l~alD~~tG~~~W~~~~~~~--~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~  215 (677)
T 1kb0_A          140 LIALDAATGKEVWHQNTFEG--QKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSK  215 (677)
T ss_dssp             EEEEETTTCCEEEEEETTTT--CCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred             EEEEECCCCCEEeeecCCcC--cCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccc
Confidence            77777766544221110000  000001110 011  13344444 3      6899999999988766542211100  


Q ss_pred             -------------cc---------cccCCeEEEEEeCCCCeEEEEEeCCC-------------------cEEEEEcCCcc
Q 010287          277 -------------ME---------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLIDMRQSA  315 (513)
Q Consensus       277 -------------~~---------~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~  315 (513)
                                   ..         +.......++++|++ .+++.+..++                   .|..+|.++++
T Consensus       216 ~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~  294 (677)
T 1kb0_A          216 PFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK  294 (677)
T ss_dssp             CCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred             cccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence                         00         111122367889987 6777776654                   49999999988


Q ss_pred             cccccceeeccccCCCCccccccccccEEEEEEeecC---CEEEEEeC-CeEEEEEccCCCCCeeeeeccccc-ccccc-
Q 010287          316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPVATFQVHEHL-RPKLC-  389 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~-  389 (513)
                      .......  ..+....    +.. .....-+....+|   ..++.++. |.++++|..+ ++++..+...... ...+. 
T Consensus       295 ~~W~~~~--~~~d~wd----~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          295 YKWHYQE--TPGDNWD----YTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EEEEEES--STTCCSC----CCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECT
T ss_pred             EEEEEec--CCCcccc----ccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCC
Confidence            7543111  0010000    000 0122223444577   56777775 9999999997 7777655422110 00000 


Q ss_pred             --c--c-----cccCC--c-------cceeeEEEeCCCCEEEEEeC----------------------------------
Q 010287          390 --D--L-----YENDS--I-------FDKFECCLSGDGGRVATGSY----------------------------------  417 (513)
Q Consensus       390 --~--~-----~~~~~--~-------~~v~~~~~s~~~~~l~~~~~----------------------------------  417 (513)
                        .  .     +....  +       ..-..++++|++.++++...                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence              0  0     00000  0       00115789999888877543                                  


Q ss_pred             ---------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec---CCCCCccccCCcccccc
Q 010287          418 ---------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFS  485 (513)
Q Consensus       418 ---------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~---~~~~~~~~~~~~~~~~~  485 (513)
                               .|.|..||+.+++ +.-..+ +..++....+...+..++.++.|+.++.++   +..++....     ...
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~-~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-----~~~  519 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQK-AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-----GTG  519 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTE-EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC
T ss_pred             ccccCCCCCccEEEEEeCCCCc-EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-----CCC
Confidence                     2789999999884 333332 223444555667788888889999999832   222232111     122


Q ss_pred             CCeeEEEEeCCCCEEE
Q 010287          486 MKLLHLAWHPSENSIA  501 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la  501 (513)
                      ....-+.|.++|+.++
T Consensus       520 ~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             CCSCCEEEEETTEEEE
T ss_pred             cccCCEEEEeCCEEEE
Confidence            2334566778887544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.55  E-value=1.5e-05  Score=68.85  Aligned_cols=190  Identities=7%  Similarity=0.017  Sum_probs=114.9

Q ss_pred             CeEEEEEeCCCCeEEEEEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-
Q 010287          283 VITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-  359 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-  359 (513)
                      ....+.|+|++ .++++.+.  ++.|+++|+.+++..    ..+.....           .....+++  ++..|+..+ 
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~----~~i~l~~~-----------~fgeGi~~--~g~~lyv~t~   83 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVE----NIHKMDDS-----------YFGEGLTL--LNEKLYQVVW   83 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEE----EEEECCTT-----------CCEEEEEE--ETTEEEEEET
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEE----EEEecCCC-----------cceEEEEE--eCCEEEEEEe
Confidence            35799999987 77776654  689999999998863    22222111           11233444  455666655 


Q ss_pred             -CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC
Q 010287          360 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA  438 (513)
Q Consensus       360 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  438 (513)
                       ++.+.++|..+ .+.+.++... ...                ...+++||+.++++..++.|.++|..+.+.. ..+..
T Consensus        84 ~~~~v~viD~~t-~~v~~~i~~g-~~~----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~V  144 (266)
T 2iwa_A           84 LKNIGFIYDRRT-LSNIKNFTHQ-MKD----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNV  144 (266)
T ss_dssp             TCSEEEEEETTT-TEEEEEEECC-SSS----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEEC
T ss_pred             cCCEEEEEECCC-CcEEEEEECC-CCC----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEE
Confidence             39999999986 7777777543 111                3346678887777777899999999887433 33332


Q ss_pred             --CCCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CCCccccCCccc---------cccCCeeEEEEeCCCCEEEE
Q 010287          439 --SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAF---------DFSMKLLHLAWHPSENSIAC  502 (513)
Q Consensus       439 --~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~---------~~~~~i~~~~~sp~~~~la~  502 (513)
                        ...+   .+.+.+. ++...+....++.|.+++..  +... .+.....         .-....+.++|+|+++.|.+
T Consensus       145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred             CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence              1222   4566676 67666666556666662221  1110 0111000         01135689999999988776


Q ss_pred             Ec--CCcEEEE
Q 010287          503 AA--SNSLYMY  511 (513)
Q Consensus       503 ~~--~~~~~i~  511 (513)
                      +.  .+.+++.
T Consensus       223 Tgk~~~~v~~i  233 (266)
T 2iwa_A          223 TGKLWPKLFEI  233 (266)
T ss_dssp             EETTCSEEEEE
T ss_pred             ECCCCCeEEEE
Confidence            55  4555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.54  E-value=3.9e-05  Score=69.52  Aligned_cols=157  Identities=10%  Similarity=0.019  Sum_probs=90.4

Q ss_pred             eEEEEecc-CCCEEEEE-c-----------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCe
Q 010287          235 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN  295 (513)
Q Consensus       235 v~~~~~~~-~~~~l~s~-~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  295 (513)
                      ...+++.+ +|+.+++- .                 ++.|..+|..++....         +.........++++|++..
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---------~~~~~~~p~gia~~~dg~~  198 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---------LLKELHVPGGAEVSADSSF  198 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---------EEEEESCCCEEEECTTSSE
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---------eccCCccCcceEECCCCCE
Confidence            56788888 88766654 2                 2668888876443211         1111233567999999833


Q ss_pred             EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-----------CeEE
Q 010287          296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----------MTLK  364 (513)
Q Consensus       296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-----------~~v~  364 (513)
                      ++++-...+.|.+|++......  ....+..            ..+ ...++++++|.+.++...           +.|.
T Consensus       199 lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          199 VLVAEFLSHQIVKYWLEGPKKG--TAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             EEEEEGGGTEEEEEESSSTTTT--CEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcCC--ccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEE
Confidence            5555566789999998753211  0111111            013 677899999987776422           4577


Q ss_pred             EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      .+|..  ++.+..+.......           +..++.+++ .+++++++...++.|..+++...
T Consensus       264 ~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          264 KFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             EECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            77754  66666665433210           011235555 36666666667888999988643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.54  E-value=7.3e-05  Score=64.51  Aligned_cols=194  Identities=12%  Similarity=-0.008  Sum_probs=122.2

Q ss_pred             CCeEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          233 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      .....+.|++++..+++. .  ++.|.++|+.+++....+      .+..+ .....+++..  ..++++.-.++.+.++
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------~l~~~-~fgeGi~~~g--~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------KMDDS-YFGEGLTLLN--EKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEET--TEEEEEETTCSEEEEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------ecCCC-cceEEEEEeC--CEEEEEEecCCEEEEE
Confidence            346799999987555554 2  689999999987755432      12221 1223455553  2667777779999999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      |..+.+..    ..+... .+             ....+++||+.+++++. +.|.++|..+ .+.+..+........  
T Consensus        92 D~~t~~v~----~~i~~g-~~-------------~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p--  150 (266)
T 2iwa_A           92 DRRTLSNI----KNFTHQ-MK-------------DGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHR--  150 (266)
T ss_dssp             ETTTTEEE----EEEECC-SS-------------SCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEE--
T ss_pred             ECCCCcEE----EEEECC-CC-------------CeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcc--
Confidence            99887763    333221 00             11336678887777655 9999999986 677766654332110  


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-------------CCceeEEEEcCCCC-c
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRP-S  454 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~-~  454 (513)
                              +...+.+.|. ++...+....++.|.+.|+.+++. ...+...             ......++++|+++ +
T Consensus       151 --------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          151 --------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             --------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             --------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence                    0012367787 775555555688999999998843 3333321             12457899999986 4


Q ss_pred             eeeecCCCeEEE
Q 010287          455 RPLGSLSGVVRR  466 (513)
Q Consensus       455 l~~~~~d~~i~~  466 (513)
                      ++++.....+..
T Consensus       221 fVTgk~~~~v~~  232 (266)
T 2iwa_A          221 FVTGKLWPKLFE  232 (266)
T ss_dssp             EEEETTCSEEEE
T ss_pred             EEECCCCCeEEE
Confidence            566666666655

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.54  E-value=3.3e-05  Score=71.74  Aligned_cols=179  Identities=14%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             CEEEEE-cCCeEEEEEcCCCcceeeecccCccc---cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287          245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  320 (513)
Q Consensus       245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  320 (513)
                      ..++.+ .++.+..+|..+++...+.....+..   +............. +  ..++.++.++.+..+|.++++...+ 
T Consensus       189 ~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~-  264 (376)
T 3q7m_A          189 GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK-  264 (376)
T ss_dssp             TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE-
T ss_pred             CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee-
Confidence            355555 68899999998877655431100000   00000000011111 2  4567778899999999998876322 


Q ss_pred             ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287          321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                         ...              .....+..  ++..++.++ ++.|..+|..+ ++.+..........              
T Consensus       265 ---~~~--------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------  310 (376)
T 3q7m_A          265 ---REL--------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------  310 (376)
T ss_dssp             ---ECC--------------CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------
T ss_pred             ---ccC--------------CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------
Confidence               111              12333333  355566555 48999999986 66554443111100              


Q ss_pred             eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE-EEEcCCCCceeeecCCCeEEE
Q 010287          400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ......  .+..|+.++.+|.|+++|..+++. ..........+.. ...  .+..|..++.+|.+..
T Consensus       311 ~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~  373 (376)
T 3q7m_A          311 LTSPVL--YNGNLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS  373 (376)
T ss_dssp             CCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred             ccCCEE--ECCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence            002222  246788889999999999998843 3333332222221 122  2445666667776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.51  E-value=0.00026  Score=60.74  Aligned_cols=176  Identities=11%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce--eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      .-.+++.+++.++++. .++.+.++++......  ....... ............++|+|.+ +.|.++.+.....+|.+
T Consensus        72 ~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-LQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-CSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEE
T ss_pred             hHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-cccccccCCcceEEEeCCC-CEEEEEECcCCceEEEE
Confidence            5678888888777776 5888999988755431  1111110 0011234557899999998 55555666555566655


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      . +......+...+...-.     -......+.+++++|... +++..+. ..|.++|..  ++++..+......-.-..
T Consensus       150 ~-g~~~~~~l~i~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~  221 (255)
T 3qqz_A          150 N-GLLSSNELHISKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSH  221 (255)
T ss_dssp             E-STTCSSCCEEEECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSS
T ss_pred             c-ccccCCceeeecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCccc
Confidence            4 21111111211110000     001123578899999554 4444544 889999976  666666554432100000


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                            .+..--.++|.++|+..++ ++.+.++.|...
T Consensus       222 ------~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          222 ------NIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             ------CCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred             ------ccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence                  0001127999999985444 777777776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=4.5e-05  Score=76.40  Aligned_cols=173  Identities=13%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             EEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCcccccccc-------CCeEEEEE
Q 010287          237 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF  289 (513)
Q Consensus       237 ~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~  289 (513)
                      .++++++...++.+ .++                   .|..+|.++++...+..      ...|.       .++....+
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~  307 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL  307 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence            56788877787776 454                   49999999888766531      11121       23333333


Q ss_pred             eCCCC--eEEEEEeCCCcEEEEEcCCcccccccc-------eeeccccCC---------C--Ccccccccc--ccEEEEE
Q 010287          290 HPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHS-------KLFEEQEAP---------G--TRSFFTEII--ASISDIK  347 (513)
Q Consensus       290 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~---------~--~~~~~~~~~--~~v~~i~  347 (513)
                      ..++.  ..++.++.+|.+.++|..+++.....-       ..++.....         .  ......+..  ..-..++
T Consensus       308 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a  387 (668)
T 1kv9_A          308 NIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS  387 (668)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred             ccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence            34551  268889999999999999998642100       000000000         0  000000000  0012367


Q ss_pred             EeecCCEEEEE------------------------------------eC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          348 FARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       348 ~sp~~~~l~~~------------------------------------~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++|+...++..                                    .. |.|..||+.+ ++.+-........      
T Consensus       388 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~------  460 (668)
T 1kv9_A          388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW------  460 (668)
T ss_dssp             EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC------
T ss_pred             ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC------
Confidence            77766655531                                    12 6788888886 6665544433221      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                ....+...+.++++++.|+.|+.||.++++.+
T Consensus       461 ----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          461 ----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             ----------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ----------cCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                      12345557788999999999999999988433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=0.0016  Score=66.96  Aligned_cols=256  Identities=10%  Similarity=-0.000  Sum_probs=138.3

Q ss_pred             cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecc-------cCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287          232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD-------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  304 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  304 (513)
                      ...|.++...+++.+.+....+-|.++|..+.... ....       .......-....|.++...+++ . |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFL-LPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeee-eeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence            35688999888887666555456888888754321 1100       0000001134578999999887 4 44466677


Q ss_pred             cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccc
Q 010287          305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL  384 (513)
Q Consensus       305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~  384 (513)
                      -|..++..+...     ..+.........  ..-....|.++...++|.+.+...++-|..||... + ....+......
T Consensus       334 Gl~~~~~~~~~~-----~~~~~~~~~~~~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~  404 (781)
T 3v9f_A          334 GINFISNAPPTF-----HTWSYSPTQMNE--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENREL  404 (781)
T ss_dssp             CEEEECSSCCSC-----EEEC----CCCS--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----C
T ss_pred             eEEEeCCCCCcc-----eeeccCcccccc--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCCC
Confidence            788888765432     222110000000  00012468999888888766554456688888753 2 12221100000


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-cCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                                 .-..|.++...+++.+.+ |+.++-|..++..++....... ......|.++...+++.+.+... .|.
T Consensus       405 -----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl  471 (781)
T 3v9f_A          405 -----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGV  471 (781)
T ss_dssp             -----------CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEE
T ss_pred             -----------CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-Cce
Confidence                       001245777777777554 6666678889887653221111 12346788888888877655443 665


Q ss_pred             EEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          464 VRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       464 i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .++ .....................|.++...+++++.+....++++.|+
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence            555 1111111000000000114679999999999877766567887764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.46  E-value=2.4e-05  Score=66.61  Aligned_cols=183  Identities=13%  Similarity=0.065  Sum_probs=111.4

Q ss_pred             CCeEEEEeccCCCEEEEE-cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          233 YHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      .....+.|+ ++.++.+. .+|  .|+++|+++++...++      .+.. ...-..++..  +..+++..-.++.+.+|
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------ELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------ECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------ecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence            335789998 56555554 454  9999999988765443      1211 1111234444  33666666679999999


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      |..+.+.    +..+....               ....++++++.|+.++. +.|.++|..+ .+.+..+........  
T Consensus       113 D~~t~~~----~~ti~~~~---------------eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~--  170 (262)
T 3nol_A          113 NIRNLRQ----VRSFNYDG---------------EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE--  170 (262)
T ss_dssp             ETTTCCE----EEEEECSS---------------CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE--
T ss_pred             ECccCcE----EEEEECCC---------------CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc--
Confidence            9998776    33333211               11334467887777654 8899999986 777777655321110  


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC------------CCceeEEEEcCCCCcee
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRP  456 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~  456 (513)
                              +..+..+.|. +|+..+..-.++.|.+.|..+++. ...+...            ..-.+.++++|+++.|.
T Consensus       171 --------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          171 --------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             --------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             --------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence                    0112246676 776555555788999999998843 3333221            12347899999866554


Q ss_pred             e
Q 010287          457 L  457 (513)
Q Consensus       457 ~  457 (513)
                      .
T Consensus       241 V  241 (262)
T 3nol_A          241 V  241 (262)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.46  E-value=0.00072  Score=60.59  Aligned_cols=192  Identities=12%  Similarity=0.064  Sum_probs=104.2

Q ss_pred             eEEEEeccCCCEEEEE-cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      +.++++.++++++++. ..  ..|..++..+++. ..+..     +. .......++..+++ ..+++-..++.|.++|.
T Consensus        74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~-----~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLT-----LP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEE-----CT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEe-----CC-CccccCcccccCCC-cEEEEECCCCeEEEEeC
Confidence            6789999999876665 32  2466677665442 22211     11 12223455555554 55555556889999997


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCC--eeeeecccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRPK  387 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~--~~~~~~~~~~~~~  387 (513)
                      .++...   +......-..   ....+.......+  +|++..|+.++.  +.|..|++...+..  ...+.....    
T Consensus       146 ~~~~~~---v~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~----  213 (306)
T 2p4o_A          146 VQPSGS---IWLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN----  213 (306)
T ss_dssp             TTTEEE---EEEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC----
T ss_pred             CCCcEe---EEEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCC----
Confidence            653210   0000000000   0000001234455  889988777653  89999998742221  111110000    


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCceeEEEEc---CCCCceeeec
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS  459 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~~~~  459 (513)
                                  ...++++++|+++++....+.|.+++.. +... ...+........+++|.   |+++.|...+
T Consensus       214 ------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          214 ------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             ------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence                        1278999999987777778899999976 4221 11233333456788898   7876655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.45  E-value=6.4e-08  Score=89.72  Aligned_cols=175  Identities=7%  Similarity=-0.006  Sum_probs=85.5

Q ss_pred             CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc
Q 010287          243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  321 (513)
Q Consensus       243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  321 (513)
                      ++..++++ .|+.|+.||..+++...+..        .  ..+.+..+..++ .++++++.||.|..||..+++...+  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~--   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--------E--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTK--   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE--------C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEE--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec--------C--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeee--
Confidence            45667776 79999999999888766531        1  233333344565 6777778999999999988876322  


Q ss_pred             eeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287          322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK  400 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  400 (513)
                        +......     .. ...++    +. ++..+++++ ++.|+.||..+ ++.+..+..+.                  
T Consensus        75 --~~~~~~~-----~~-~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------  122 (369)
T 2hz6_A           75 --LPFTIPE-----LV-QASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------  122 (369)
T ss_dssp             --CSCCHHH-----HH-TTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred             --eeccCcc-----cc-ccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence              1110000     00 00111    11 233445544 58999999987 77766554432                  


Q ss_pred             eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC---CceeeecCCCeEEE
Q 010287          401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRR  466 (513)
Q Consensus       401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~  466 (513)
                       ...++|++..+++++.|+.|+.||..+++.+ -.+..+  .....++..+.   ..+++++.||.+..
T Consensus       123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a  187 (369)
T 2hz6_A          123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVT  187 (369)
T ss_dssp             -----------EEEEEEEEEEECCCSSSSSCC-CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEE
T ss_pred             -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEecc--cccCccccCCccccceEEEECCCCEEEE
Confidence             1235568888999999999999999988433 222211  11222333332   45667778888887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.44  E-value=4.2e-05  Score=65.13  Aligned_cols=187  Identities=11%  Similarity=0.060  Sum_probs=112.5

Q ss_pred             eEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--
Q 010287          284 ITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--  359 (513)
Q Consensus       284 i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--  359 (513)
                      ...+.|+ ++ .++.+.+.+|  .|+++|+.+++...    .....             .........+++..|...+  
T Consensus        45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~-------------~~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELG-------------KRYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE----EEECC-------------TTCCEEEEEEETTEEEEEESS
T ss_pred             cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE----EEecC-------------CccceeEEEEeCCEEEEEEee
Confidence            4688898 66 7888888876  99999999998733    22221             1222333344566666655  


Q ss_pred             CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-
Q 010287          360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-  438 (513)
Q Consensus       360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-  438 (513)
                      ++.+.+||..+ .+.+.++.....                  ...+++|++.|+.+..++.|.++|..+.+.. ..++. 
T Consensus       106 ~~~v~v~D~~t-~~~~~ti~~~~e------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~-~~I~V~  165 (262)
T 3nol_A          106 NGLGFVWNIRN-LRQVRSFNYDGE------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPV-RTITVT  165 (262)
T ss_dssp             SSEEEEEETTT-CCEEEEEECSSC------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEE-EEEECE
T ss_pred             CCEEEEEECcc-CcEEEEEECCCC------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEE-EEEEec
Confidence            49999999997 888888775432                  2234457777776666788999999987433 33332 


Q ss_pred             -CCCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CC-CccccCCc------cccccCCeeEEEEeCCCCEEEEEcC
Q 010287          439 -SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN-SALDANGN------AFDFSMKLLHLAWHPSENSIACAAS  505 (513)
Q Consensus       439 -~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~~~~~~------~~~~~~~i~~~~~sp~~~~la~~~~  505 (513)
                       ...+   ++.+.+. +|+..+..-.+..|.+++..  +. ....+..-      ...-....+.+||+|+++.|.+++.
T Consensus       166 ~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          166 AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             2223   2345555 66666665555555552111  11 10011100      0111345689999999998887775


Q ss_pred             CcEEE
Q 010287          506 NSLYM  510 (513)
Q Consensus       506 ~~~~i  510 (513)
                      .-=.+
T Consensus       245 ~Wp~~  249 (262)
T 3nol_A          245 LWPKV  249 (262)
T ss_dssp             TCSEE
T ss_pred             CCCce
Confidence            43333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.39  E-value=7.4e-05  Score=63.64  Aligned_cols=184  Identities=11%  Similarity=-0.002  Sum_probs=113.0

Q ss_pred             cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ......+.|+. +.++.+. .+|.|+++|+++++...++  +.     . ...-..+++.  +..+++..-.++.+.+||
T Consensus        54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-----~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RL-----G-NIFAEGLASD--GERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--EC-----T-TCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred             ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CC-----C-CcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence            34457888874 4444444 6888999999988765442  11     1 1111234444  336777777799999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ..+.+..    ..+....             .  ...+++|++.|+.++. +.|.++|..+ .+.+..+........   
T Consensus       123 ~~Tl~~~----~ti~~~~-------------e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~---  179 (268)
T 3nok_A          123 GMPPQRE----RTTRYSG-------------E--GWGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP---  179 (268)
T ss_dssp             TTTTEEE----EEEECSS-------------C--CCCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred             CCcCcEE----EEEeCCC-------------c--eeEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc---
Confidence            9988763    3333211             1  1233467888887664 9999999987 777777665432211   


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-------------CCCceeEEEEcCCCCc-e
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPS-R  455 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l  455 (513)
                             +..+..+.|. +|+..+..-.++.|.+.|..+++ ....+..             ...-.+.+++.|+++. +
T Consensus       180 -------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          180 -------VELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             -------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred             -------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence                   1112356777 77655555568899999999884 3333321             1134578999997554 4


Q ss_pred             eee
Q 010287          456 PLG  458 (513)
Q Consensus       456 ~~~  458 (513)
                      ++|
T Consensus       251 VTG  253 (268)
T 3nok_A          251 MTG  253 (268)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.34  E-value=0.00085  Score=58.70  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=72.2

Q ss_pred             eEEEEeccCCCEEEEE--c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          235 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ...++++|++..|..+  .  .+.|..+++.... ...+.       .........++++|++..++++-...+.|.++|
T Consensus       124 P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            5788999976655554  2  4688888876322 11111       112245789999998746667767788999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeec
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV  380 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~  380 (513)
                      +.....    ...+...             .....++.  ++..|+.++ . +.|.++|..+ ++.+..+..
T Consensus       196 ~~g~~~----~~~~~~~-------------~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~  247 (267)
T 1npe_A          196 PAQPGR----RKVLEGL-------------QYPFAVTS--YGKNLYYTDWKTNSVIAMDLAI-SKEMDTFHP  247 (267)
T ss_dssp             TTEEEE----EEEEECC-------------CSEEEEEE--ETTEEEEEETTTTEEEEEETTT-TEEEEEECC
T ss_pred             cCCCce----EEEecCC-------------CCceEEEE--eCCEEEEEECCCCeEEEEeCCC-CCceEEEcc
Confidence            865432    1111111             22345654  355555554 3 8999999885 666666643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.32  E-value=0.0019  Score=59.94  Aligned_cols=156  Identities=10%  Similarity=0.056  Sum_probs=91.2

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~  311 (513)
                      ...+++.+.+..|+.+  ..+.|.+.++..... ..+       +.........++++|.+..++.+-... +.|..+++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            3457788765555554  477888888763322 111       122235578999999764555555455 77888887


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .....     ..+-.           ........|+++|++..|+.++.  +.|..+|+.  +.....+.......    
T Consensus       233 dG~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~----  290 (386)
T 3v65_B          233 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH----  290 (386)
T ss_dssp             TSCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS----
T ss_pred             CCCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC----
Confidence            54321     11110           01135788999998777776653  889999876  33322222111000    


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                                -..+++. .+.++++....+.|..++..++..
T Consensus       291 ----------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          291 ----------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             ----------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ----------ceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence                      1267773 445555666778898888666633

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.00045  Score=61.94  Aligned_cols=234  Identities=7%  Similarity=-0.005  Sum_probs=124.4

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--cEEEE
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLI  309 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~vw  309 (513)
                      .....++|+++++++++. .++.|..||....  ....+        .....+..+++.+++ +++++.....  .|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~--------~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHA--------TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSL  100 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEE--------ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEE--------eCCCCceeEEEcCCC-cEEEEeccCCcceEEEE
Confidence            346789999999877776 6899999998742  22211        113458899999998 6665554332  46667


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCC-Ceeeeecccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG-PVATFQVHEHLRPK  387 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~  387 (513)
                      |..+++..    .......           ......++..+++..+++-. .+.|+++|... +. .+............
T Consensus       101 d~~~g~~~----~~~~~~~-----------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~  164 (306)
T 2p4o_A          101 VKSDGTVE----TLLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS  164 (306)
T ss_dssp             ECTTSCEE----EEEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred             cCCCCeEE----EEEeCCC-----------ccccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence            76666531    1111110           01233444445544444433 38888888653 21 11111100000000


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCcc--ceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV  464 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  464 (513)
                      .      ..+.....+  +|++++|+.+ ...+.|..|++......  ...+. .......+++.++|+++++....+.|
T Consensus       165 ~------~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          165 E------SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             T------CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             c------CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence            0      000111234  8888766654 46789999998742111  11111 11234578999999877776656666


Q ss_pred             EEecCCCCCccccCCccccccCCeeEEEEe---CCCCEEEEEc
Q 010287          465 RRVKGADNSALDANGNAFDFSMKLLHLAWH---PSENSIACAA  504 (513)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---p~~~~la~~~  504 (513)
                      .++......  ............+++++|.   ||++.|.+++
T Consensus       236 ~~~~~~G~~--~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          236 VRIAPDRST--TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEECTTCCE--EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEECCCCCE--EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            663211100  0000000112568999999   8988777554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.28  E-value=0.00029  Score=59.46  Aligned_cols=193  Identities=10%  Similarity=0.066  Sum_probs=114.2

Q ss_pred             eeEeeccccCCeEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287          224 RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  300 (513)
Q Consensus       224 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  300 (513)
                      .+.+..........+.|+. +.++.+. .  +..|+.+|+.+++...++      .+..+. .-..++...  .+++...
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~~-fgeGi~~~~--~~ly~lt   81 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPPY-FGAGIVAWR--DRLIQLT   81 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTTC-CEEEEEEET--TEEEEEE
T ss_pred             EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCCc-ceeEEEEeC--CEEEEEE
Confidence            3344333344567899986 4444544 3  469999999988755432      122111 112344443  3677777


Q ss_pred             eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287          301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~  379 (513)
                      -.++.+.+||..+.+.    +..+....               ....+.+++..|+.++. +.|.++|..+ .+.+.++.
T Consensus        82 w~~~~v~v~D~~tl~~----~~ti~~~~---------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~  141 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTP----RARFRYPG---------------EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIK  141 (243)
T ss_dssp             SSSSEEEEEETTTTEE----EEEEECSS---------------CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEE
T ss_pred             eeCCEEEEEECCcCcE----EEEEeCCC---------------CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEE
Confidence            7899999999998776    33333211               11233467777776554 8999999987 77777766


Q ss_pred             cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-------------CCCceeEE
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQ  446 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~  446 (513)
                      .......          +..+..+.+. +|+..+..-.+..|.+.|+.+++. ...+..             ...-.+.+
T Consensus       142 V~~~g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGI  209 (243)
T 3mbr_X          142 VTAGGRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGI  209 (243)
T ss_dssp             CEETTEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred             EccCCcc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEE
Confidence            5432110          1112355665 666555555678999999998843 333221             11245789


Q ss_pred             EEcCCCCce-eee
Q 010287          447 VQTPSRPSR-PLG  458 (513)
Q Consensus       447 ~~~~~~~~l-~~~  458 (513)
                      ++.|+++.| ++|
T Consensus       210 A~d~~~~~lfVTG  222 (243)
T 3mbr_X          210 AFDAEHDRLFVTG  222 (243)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEC
Confidence            999976544 444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0025  Score=58.14  Aligned_cols=156  Identities=10%  Similarity=0.063  Sum_probs=92.6

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~  311 (513)
                      ...+++.+.+..|+.+  ..+.|.+.++...... .+       +.........++++|.+..++.+-... +.|..+++
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            4578888765555554  4788999998743321 11       122234578999999764666665555 78888887


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .....     ..+-.           ........++++|++..|..++.  +.|..+|+.  +.....+.......    
T Consensus       190 dG~~~-----~~~~~-----------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~----  247 (349)
T 3v64_C          190 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH----  247 (349)
T ss_dssp             TSCSC-----EESCC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSS----
T ss_pred             CCCCc-----EEEEE-----------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCC----
Confidence            54321     11110           01135788999998877777653  889999987  33322221111000    


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                                -..+++. .+..+++-...+.|..++..+++.
T Consensus       248 ----------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          248 ----------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             ----------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ----------ceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence                      1266773 445555666778888888666643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.00054  Score=57.83  Aligned_cols=185  Identities=10%  Similarity=0.103  Sum_probs=107.8

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                      .....+.|++ + .++.+.+.+|  .|+.+|+.+++..    .......             ........+++..|...+
T Consensus        21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~----~~~~l~~-------------~~fgeGi~~~~~~ly~lt   81 (243)
T 3mbr_X           21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRIL----QRAEVPP-------------PYFGAGIVAWRDRLIQLT   81 (243)
T ss_dssp             CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEE----EEEECCT-------------TCCEEEEEEETTEEEEEE
T ss_pred             cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEE----EEEeCCC-------------CcceeEEEEeCCEEEEEE
Confidence            4466899987 4 7888877764  8999999998873    2222221             122233334456666555


Q ss_pred             --CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec
Q 010287          360 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE  437 (513)
Q Consensus       360 --~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  437 (513)
                        ++.+.+||..+ .+.+.++.....                  ...+.+|++.|+.+..++.|.++|..+.+.. ..++
T Consensus        82 w~~~~v~v~D~~t-l~~~~ti~~~~~------------------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I~  141 (243)
T 3mbr_X           82 WRNHEGFVYDLAT-LTPRARFRYPGE------------------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQV-GSIK  141 (243)
T ss_dssp             SSSSEEEEEETTT-TEEEEEEECSSC------------------CCEEEECSSCEEEECSSSEEEEECTTTCCEE-EEEE
T ss_pred             eeCCEEEEEECCc-CcEEEEEeCCCC------------------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEE-EEEE
Confidence              49999999987 788887765432                  1233456776766667889999999987433 3333


Q ss_pred             C--CCCc---eeEEEEcCCCCceeeecCCCeEEEecC--CCC-CccccC---Ccc----ccccCCeeEEEEeCCCCEEEE
Q 010287          438 A--SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKG--ADN-SALDAN---GNA----FDFSMKLLHLAWHPSENSIAC  502 (513)
Q Consensus       438 ~--~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~-~~~~~~---~~~----~~~~~~i~~~~~sp~~~~la~  502 (513)
                      .  +..+   ++.+.+. +|+..+..-.+..|.+++.  .+. ....+.   ...    ..-....+.+||+|+++.|.+
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV  220 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV  220 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence            2  2222   2334443 5665555543444443111  111 000000   000    112346799999999888887


Q ss_pred             EcCC
Q 010287          503 AASN  506 (513)
Q Consensus       503 ~~~~  506 (513)
                      .+..
T Consensus       221 TGK~  224 (243)
T 3mbr_X          221 TGKR  224 (243)
T ss_dssp             EETT
T ss_pred             ECCC
Confidence            7644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.0075  Score=61.90  Aligned_cols=244  Identities=10%  Similarity=-0.043  Sum_probs=136.5

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcc---ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ..|.++...++|.+.+...++-|..++......  ..+...+.   ...-....|.++...+++ .+ -.|+.++-+..|
T Consensus       313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~~  388 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQG-KL-WIGTDGGGINVF  388 (781)
T ss_dssp             SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTS-CE-EEEEBSSCEEEE
T ss_pred             CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCC-CE-EEEeCCCcEEEE
Confidence            458899999888877666677788888764331  11110000   001123568999988887 44 456666778889


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      |..++..     ..+....        ......|.++...+++.+.+....+.|..+|..+ + ....+... ..     
T Consensus       389 ~~~~~~~-----~~~~~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~-~~-----  447 (781)
T 3v9f_A          389 ENGKRVA-----IYNKENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-K-KFQIIELE-KN-----  447 (781)
T ss_dssp             ETTEEEE-----ECC-------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-C-EEEECCST-TT-----
T ss_pred             ECCCCeE-----EEccCCC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-C-cEEEeccC-CC-----
Confidence            9765432     1111100        0112568999888888776644346788888764 2 22222211 00     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-c---CCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-E---ASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                            ....|.++...+++.+.+ |+. +-|..||..++....... .   .....+.++...+++.+.+....+|..+
T Consensus       448 ------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~  519 (781)
T 3v9f_A          448 ------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGI  519 (781)
T ss_dssp             ------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEE
T ss_pred             ------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEE
Confidence                  001145777777776544 455 458889987653321111 1   1135688888888888666554467666


Q ss_pred             Ee-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE-EEEe
Q 010287          466 RV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL-YMYY  512 (513)
Q Consensus       466 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~-~i~~  512 (513)
                      +- .......  +....--....|.++...++|++.+... +++ ..|+
T Consensus       520 ~~~~~~~~~~--~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          520 YTPDMQLVRK--FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             ECTTCCEEEE--ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             EeCCCCeEEE--ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            61 1111110  0000001245789999999998766554 777 6653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.22  E-value=0.00033  Score=68.63  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=35.7

Q ss_pred             CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      +.|..||+.+ ++.+-.+......                ....+...+..++.++.||.|+.||.++++.+
T Consensus       444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence            6788888876 6665554432211                12223335667778999999999999998443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.0005  Score=62.15  Aligned_cols=193  Identities=10%  Similarity=0.020  Sum_probs=109.0

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc------------ccccccCCeEEEEEeC-CCCeEEEEE
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA------------NMEDLTEVITSAEFHP-THCNMLAYS  300 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~-~~~~~l~~~  300 (513)
                      ..+++|+++++++.++ .++.|..|+..+.... .+......            ........+..+++.+ ++ ++++ +
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v-~   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI-V   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE-E
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE-E
Confidence            5678899999867777 7899999988743321 11000000            0001123578999998 65 5544 4


Q ss_pred             eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC------------------C
Q 010287          301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY------------------M  361 (513)
Q Consensus       301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~------------------~  361 (513)
                      ...+.|..+|..++..     ..+.....       .........+++.+ +|.+.++-..                  +
T Consensus        98 d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             ETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             ECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence            4455588888765432     11111000       00013467899999 9987776321                  5


Q ss_pred             eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCc-cceeecCC
Q 010287          362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTLEAS  439 (513)
Q Consensus       362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~~~~  439 (513)
                      .|..||... ++ +..+......               -..++++|++++|+.+ +..+.|.+|++..... ....+...
T Consensus       166 ~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~  228 (322)
T 2fp8_A          166 RLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI  228 (322)
T ss_dssp             EEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC
T ss_pred             eEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC
Confidence            677777653 32 2222111000               1278999999866655 5668999999875311 11111111


Q ss_pred             CCceeEEEEcCCCCceeeecC
Q 010287          440 KNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       440 ~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      .. ...+++.++|++.++...
T Consensus       229 ~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          229 PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             SS-EEEEEECTTSCEEEEEEE
T ss_pred             CC-CCCeEECCCCCEEEEecC
Confidence            12 567899999987666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.20  E-value=0.00014  Score=69.60  Aligned_cols=188  Identities=12%  Similarity=0.090  Sum_probs=116.4

Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE-e-ecCCEEEEEe---------
Q 010287          291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-A-RNGRHILSRD---------  359 (513)
Q Consensus       291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-s-p~~~~l~~~~---------  359 (513)
                      +||..+++....+..|.+.|+.+.+.    ...++.+..           .....+++ + |+++++++++         
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g-----------~~phg~~~~~~p~~~~v~~~~~~~~p~~~d  163 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNA-----------KGIHGLRPQKWPRSNYVFCNGEDETPLVND  163 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSC-----------CSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCC-----------CCCcceeeeecCCCcEEEEecccccccCCC
Confidence            47734555555577899999998765    222222211           34678887 5 8999998873         


Q ss_pred             ---------C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC----------
Q 010287          360 ---------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----------  419 (513)
Q Consensus       360 ---------~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------  419 (513)
                               + +.+.+.|..+ .+....+.....+.                .++++|+|+++++.+.+.          
T Consensus       164 g~~l~~~~~~~~~vtvID~~t-~~v~~qI~Vgg~pd----------------~~~~spdGk~~~vt~~~se~~~~i~~~~  226 (595)
T 1fwx_A          164 GTNMEDVANYVNVFTAVDADK-WEVAWQVLVSGNLD----------------NCDADYEGKWAFSTSYNSEKGMTLPEMT  226 (595)
T ss_dssp             SSSTTCGGGEEEEEEEEETTT-TEEEEEEEESSCCC----------------CEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred             CcccccccccCceEEEEECCC-CeEEEEEEeCCCcc----------------ceEECCCCCEEEEEecCcccCcchhhcc
Confidence                     2 6889999986 66666665433221                578999999988877543          


Q ss_pred             ----------------------------cEEEEecCC--CCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEEec
Q 010287          420 ----------------------------LFRVFGCSE--GSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVK  468 (513)
Q Consensus       420 ----------------------------~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~  468 (513)
                                                  .|.+.|..+  +......+... .....+.++|||++++.+ ..+..|.+++
T Consensus       227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          227 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             ccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence                                        366667665  32212223222 234578999999987655 4577777732


Q ss_pred             CCCC--------CccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287          469 GADN--------SALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYY  512 (513)
Q Consensus       469 ~~~~--------~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~  512 (513)
                      ....        ...........-......++|+|+| .+.+..  ++.+.+|+
T Consensus       306 ~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          306 VTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             GGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred             CcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence            2211        0000111122345778999999999 544444  77888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.19  E-value=0.00013  Score=62.08  Aligned_cols=182  Identities=12%  Similarity=0.070  Sum_probs=109.2

Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CC
Q 010287          284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM  361 (513)
Q Consensus       284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~  361 (513)
                      ...+.|+. + .++.+.+.+|.|+++|+.+++...+.   +..               ........+++..|...+  ++
T Consensus        57 tqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~---------------~~FgeGit~~g~~Ly~ltw~~~  116 (268)
T 3nok_A           57 TQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME---RLG---------------NIFAEGLASDGERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE---ECT---------------TCCEEEEEECSSCEEEEESSSC
T ss_pred             cceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE---CCC---------------CcceeEEEEeCCEEEEEEccCC
Confidence            46888874 4 88899999999999999999874331   221               122222334455555544  49


Q ss_pred             eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--C
Q 010287          362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--S  439 (513)
Q Consensus       362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~  439 (513)
                      .+.+||..+ .+.+.++......                +.++  +|++.|+.+..++.|+++|..+.+. ...++.  .
T Consensus       117 ~v~V~D~~T-l~~~~ti~~~~eG----------------wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~  176 (268)
T 3nok_A          117 LLFTWSGMP-PQRERTTRYSGEG----------------WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLR  176 (268)
T ss_dssp             EEEEEETTT-TEEEEEEECSSCC----------------CCEE--EETTEEEEECSSSEEEEECTTTCCE-EEEEECEET
T ss_pred             EEEEEECCc-CcEEEEEeCCCce----------------eEEe--cCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCC
Confidence            999999997 8888877653321                1344  5678887777789999999998743 333332  2


Q ss_pred             CCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CC-CccccCCc-------cccccCCeeEEEEeCCCCEEEEEcCC
Q 010287          440 KNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN-SALDANGN-------AFDFSMKLLHLAWHPSENSIACAASN  506 (513)
Q Consensus       440 ~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~~~~~~-------~~~~~~~i~~~~~sp~~~~la~~~~~  506 (513)
                      ..+   ++.+.+. +|+..+..-.+..|.+++..  +. ....+..-       ...-..-.+.+||+|+++.|.+.+..
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            222   3445555 66666655445555542111  11 10001000       01113467899999998877766644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.14  E-value=0.00017  Score=72.35  Aligned_cols=59  Identities=10%  Similarity=-0.014  Sum_probs=38.6

Q ss_pred             eEEEeCCCCEEEEEeCC-----------CcEEEEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecC
Q 010287          402 ECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      .+...|++++++.|+.+           ..+.+||+.+..-.. ..+...........+.++++.++.|+.
T Consensus       460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            45677899999999854           468999998653221 112222222234556789999999885

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.11  E-value=0.0036  Score=63.72  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             eEEEEeccCCCEEEEE-c---CCeEEEEEcCCCccee--eecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--C--
Q 010287          235 INSISNNSDGETFISA-D---DLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--G--  304 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g--  304 (513)
                      ...+.|+||+++|+.. .   ...|.++|+.++....  ..      ..........++.|+..+ .+++....+  +  
T Consensus       273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~  345 (751)
T 2xe4_A          273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VRPREKGVRYDVQMHGTS-HLVILTNEGGAVNH  345 (751)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SSCCCTTCCEEEEEETTT-EEEEEECTTTCTTC
T ss_pred             EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------eecCCCCceEEEeeeeCC-EEEEEeCCCCCCCc
Confidence            4578899999988864 2   5578888987653211  11      112233445666665544 555555544  3  


Q ss_pred             cEEEEEcCC
Q 010287          305 SIRLIDMRQ  313 (513)
Q Consensus       305 ~i~vwd~~~  313 (513)
                      .|..+|+.+
T Consensus       346 ~L~~~d~~~  354 (751)
T 2xe4_A          346 KLLIAPRGQ  354 (751)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEcCCC
Confidence            455556543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.11  E-value=0.0018  Score=63.46  Aligned_cols=65  Identities=8%  Similarity=0.040  Sum_probs=38.2

Q ss_pred             CeEEEEEcCCCcceeeecccCcc--ccccccCCeEEEEEe-CCCC--eEEEEEeCCCcEEEEEcCCccccc
Q 010287          253 LRINLWNLEISNQSFNIVDVKPA--NMEDLTEVITSAEFH-PTHC--NMLAYSSSKGSIRLIDMRQSALCD  318 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~~~  318 (513)
                      +.|.-+|.++++...........  .+.....++. +... .++.  ..++.++.+|.+.++|.++++...
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence            57999999988876653100000  0001112222 2222 3552  367889999999999999988643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.08  E-value=0.004  Score=53.36  Aligned_cols=214  Identities=11%  Similarity=0.098  Sum_probs=119.1

Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      .+.+-...+..++|+|++..++++...++.|...|.. ++.    .+.+....           ......|++.+++.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v----~~~i~l~g-----------~~D~EGIa~~~~g~~~   84 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL----IRTIPLDF-----------VKDLETIEYIGDNQFV   84 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE----EEEEECSS-----------CSSEEEEEECSTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE----EEEEecCC-----------CCChHHeEEeCCCEEE
Confidence            3445556799999999875677778889999999986 554    22221110           0347788898888877


Q ss_pred             EEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC--CCcc
Q 010287          356 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAE  432 (513)
Q Consensus       356 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~  432 (513)
                      ++... +.+.++++...+. +.......-.   +.....+.   +...++|+|+++.|+++.......+|.+..  ....
T Consensus        85 vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             EEETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             EEECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            76544 8999999875332 2211111100   00001111   234899999998777777655555555541  1011


Q ss_pred             ceeec-------CCCCceeEEEEcCCCCce-eeecCCCeEEE--ecCCCCCccccCCccccc---cCCeeEEEEeCCCCE
Q 010287          433 STTLE-------ASKNPMRRQVQTPSRPSR-PLGSLSGVVRR--VKGADNSALDANGNAFDF---SMKLLHLAWHPSENS  499 (513)
Q Consensus       433 ~~~~~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~  499 (513)
                      ...+.       .+......+++.|....+ +....++.+-.  .++.......+.....+.   -.....|+|.|+|++
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence            11111       123345688888765543 33334444433  122111111111111111   135789999999997


Q ss_pred             EEEEcCCcEEEEe
Q 010287          500 IACAASNSLYMYY  512 (513)
Q Consensus       500 la~~~~~~~~i~~  512 (513)
                      .+++=.|-++.|.
T Consensus       238 yIvsE~n~~y~f~  250 (255)
T 3qqz_A          238 YIVSEPNRFYRFT  250 (255)
T ss_dssp             EEEETTTEEEEEE
T ss_pred             EEEcCCceEEEEE
Confidence            7776577666664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.08  E-value=0.002  Score=63.15  Aligned_cols=28  Identities=4%  Similarity=0.048  Sum_probs=22.4

Q ss_pred             CceEEEeecCCeEEEEEccCceeeeeec
Q 010287          126 SALYLLSTNDKTIKLWKVQEKKVKKVFD  153 (513)
Q Consensus       126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~  153 (513)
                      +..++.++.|+.|..+|..+++......
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~  142 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVE  142 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEec
Confidence            3478888889999999999998766543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.08  E-value=0.0012  Score=66.07  Aligned_cols=209  Identities=9%  Similarity=0.038  Sum_probs=100.4

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CC-----CcE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GSI  306 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~i  306 (513)
                      ..++++..++++++.|  .+..+.+||..+..  .....    .+..... -.+++..+++ ++++.|+ .+     ..+
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~----~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGP----DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECC----CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCc--eeECC----CCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence            3456778889998887  36789999988543  21110    1111111 2345566777 8888888 44     568


Q ss_pred             EEEEcCCcccccccce-eeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccc
Q 010287          307 RLIDMRQSALCDTHSK-LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       307 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      .+||..+......... ....... ... ....+.+.+..+.. .++..+..+....+..||... ..............
T Consensus       317 e~yd~~t~~W~~~~~~~~~p~~~~-~~~-~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~~  392 (656)
T 1k3i_A          317 EVYSPSSKTWTSLPNAKVNPMLTA-DKQ-GLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSNR  392 (656)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCC-CTT-GGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEETT
T ss_pred             eEeCCCCCcceeCCCccccccccc-ccc-ceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCcccccc
Confidence            9999877542110000 0000000 000 00001112221111 133433333336788899875 33222221111000


Q ss_pred             cccccccccCCccceeeEEEeC-CCCEEEEEeCCC-----------cEEEEecCCCCcccee-ecCCCC-ceeEEEEcCC
Q 010287          386 PKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKN-PMRRQVQTPS  451 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~-~~~~~~-~v~~~~~~~~  451 (513)
                      ....     ... .-.++.|.. ++++++.|+.++           .|.+||..+..-.... -..... .....+..|+
T Consensus       393 ~~~~-----~~~-~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~  466 (656)
T 1k3i_A          393 GVAP-----DAM-CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD  466 (656)
T ss_dssp             EECC-----CCB-TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred             ccCC-----CCC-CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC
Confidence            0000     000 011444543 777888887543           6778888765322111 011111 1234567789


Q ss_pred             CCceeeecCC
Q 010287          452 RPSRPLGSLS  461 (513)
Q Consensus       452 ~~~l~~~~~d  461 (513)
                      ++.++.|+.+
T Consensus       467 g~i~v~GG~~  476 (656)
T 1k3i_A          467 GSTFITGGQR  476 (656)
T ss_dssp             SCEEEECCBS
T ss_pred             CCEEEECCcc
Confidence            9999999865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.05  E-value=0.0002  Score=72.97  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=71.1

Q ss_pred             CeEEEEec-cCCCEEEEE-c-CC----eEEEEEcCCC-cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--
Q 010287          234 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--  303 (513)
Q Consensus       234 ~v~~~~~~-~~~~~l~s~-~-d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--  303 (513)
                      .+...+|| |||++|+.+ + +|    +|+++|+.++ +....       .+..   ....+.|+||+ +.|+....+  
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~---~~~~~~WspDg-~~l~y~~~d~~  243 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSG---TNGEIVWGPDH-TSLFYVTKDET  243 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEE---ECSCCEECSST-TEEEEEEECTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccC---ceeeEEEecCC-CEEEEEEECCC
Confidence            57789999 999998865 2 32    4999999876 42211       1111   13468899999 556555554  


Q ss_pred             ---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccC
Q 010287          304 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINM  370 (513)
Q Consensus       304 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~  370 (513)
                         ..|.++++.++....  ...+....           ......+.|||||++|+...   . ..|.++|+..
T Consensus       244 ~~~~~v~~~~lgt~~~~~--~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSED--VCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEEEEEEEETTSCGGGC--EEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCCEEEEEECCCCchhc--EEEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence               257777776654211  12222111           12456789999999888633   2 6788888875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.96  E-value=0.0071  Score=59.30  Aligned_cols=75  Identities=11%  Similarity=0.125  Sum_probs=46.9

Q ss_pred             EEEeccCCCEEEEE-cC----------------CeEEEEEcCCCcceeeecccCccccccc--------cCCeEEEEEe-
Q 010287          237 SISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPANMEDL--------TEVITSAEFH-  290 (513)
Q Consensus       237 ~~~~~~~~~~l~s~-~d----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~-  290 (513)
                      .+++.+....++.+ .+                +.|.-+|.++++.....      ....|        ..++. +... 
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~------q~~~~d~wd~d~~~~p~l-~d~~~  317 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY------QKTPHDEWDYAGVNVMML-SEQKD  317 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE------ESSTTCSSCCCCCCCCEE-EEEEC
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe------ecCCCccccccCCCccEE-Eeccc
Confidence            34556666677666 33                37999999988776543      11222        12222 2222 


Q ss_pred             CCCC--eEEEEEeCCCcEEEEEcCCccccc
Q 010287          291 PTHC--NMLAYSSSKGSIRLIDMRQSALCD  318 (513)
Q Consensus       291 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~  318 (513)
                      .++.  ..++.++.+|.+.++|.++++...
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence            3442  367778899999999999988653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0098  Score=56.25  Aligned_cols=216  Identities=14%  Similarity=0.036  Sum_probs=110.4

Q ss_pred             CeEEEEe-------ccCCCEEEEE-c-CC------eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287          234 HINSISN-------NSDGETFISA-D-DL------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA  298 (513)
Q Consensus       234 ~v~~~~~-------~~~~~~l~s~-~-d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  298 (513)
                      ....++|       +++++.|+.+ . ++      .|.+++...........+.  ..+.. ......++++|++..+++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~-~~~p~giavdp~~g~LYv  263 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAA-YKQCNGATIHPINGELYF  263 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEE-ESCCCCEEECTTTCCEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeecc-CCCceEEEEcCCCCeEEE
Confidence            4778999       9999866666 3 31      2666654431111100000  01111 123467888996547777


Q ss_pred             EEeCCCcEEEEEcC-------Cccccccc-------c-eeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-C
Q 010287          299 YSSSKGSIRLIDMR-------QSALCDTH-------S-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M  361 (513)
Q Consensus       299 ~~~~dg~i~vwd~~-------~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~  361 (513)
                      +-..++.|..+|+.       ++..-...       . ..+...           .......|+|+|+|.+|+.++ . .
T Consensus       264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-----------~~~~p~~ia~~p~G~~lYvaD~~~h  332 (496)
T 3kya_A          264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-----------DPSWEFQIFIHPTGKYAYFGVINNH  332 (496)
T ss_dssp             EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-----------SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             EECCCCEEEEEecccccccccCceeecccccccccccceeEecC-----------CCCCceEEEEcCCCCEEEEEeCCCC
Confidence            77788899999987       44320000       0 011111           113457899999999766665 3 8


Q ss_pred             eEEEEEccCCCCCe---eeeecccccccccccccccCCcccee-eEEEe-------CCCCEEEEEeCCCcEEEEecCCCC
Q 010287          362 TLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       362 ~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      .|+.++.......+   ..+.+................+..-. .+...       +++.++++-...+.|+.++. ++ 
T Consensus       333 ~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-  410 (496)
T 3kya_A          333 YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-  410 (496)
T ss_dssp             EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-
T ss_pred             EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-
Confidence            88887765311111   22322211000000000000111111 23443       45666666677888999984 34 


Q ss_pred             ccceeecCC------------------------CCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287          431 AESTTLEAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~~------------------------~~~v~~~~~~~~-~~~l~~~~~d~~i~~  466 (513)
                      .. .++-+.                        ......+++.++ +.++++-..+..||.
T Consensus       411 ~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk  470 (496)
T 3kya_A          411 IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT  470 (496)
T ss_dssp             BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence            22 233221                        123456788886 666666666667766

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.86  E-value=0.011  Score=55.61  Aligned_cols=207  Identities=12%  Similarity=0.017  Sum_probs=106.3

Q ss_pred             CeEEEEeccCCCEEEEEcCC-----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEE
Q 010287          234 HINSISNNSDGETFISADDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIR  307 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~  307 (513)
                      ...+++++++++++++...+     .+...+.........       .+. .......++++| ++ .++++-..++.|+
T Consensus       183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~-------~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~  253 (433)
T 4hw6_A          183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL-------SLC-NARGAKTCAVHPQNG-KIYYTRYHHAMIS  253 (433)
T ss_dssp             CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE-------EEE-ECSSBCCCEECTTTC-CEEECBTTCSEEE
T ss_pred             CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc-------ccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEE
Confidence            36789999999954443321     233333221111000       111 223456788999 55 7666666788899


Q ss_pred             EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCe---eeeeccc
Q 010287          308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPV---ATFQVHE  382 (513)
Q Consensus       308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~---~~~~~~~  382 (513)
                      .+|..++.....   .+....           ...-..++|+|++..|+.++.  +.|..++.......+   ..+.+..
T Consensus       254 ~~d~~~g~~~~~---~~~~~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~  319 (433)
T 4hw6_A          254 SYDPATGTLTEE---EVMMDT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH  319 (433)
T ss_dssp             EECTTTCCEEEE---EEECSC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred             EEECCCCeEEEE---EeccCC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence            999876553111   111100           012346999999997766553  889998876311211   2222210


Q ss_pred             ccccccccccccCCccceeeEEE---------eCCCCEEEEEeCCCcEEEEecCCCCccceeecCC--------------
Q 010287          383 HLRPKLCDLYENDSIFDKFECCL---------SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS--------------  439 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------  439 (513)
                      ..............+..-..+++         .+++.+.++-...+.|+.++.. + .. .++.+.              
T Consensus       320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-~v-~t~~G~g~~~~~G~~dG~~~  396 (433)
T 4hw6_A          320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-RV-TTYAGRGNSREWGYVDGELR  396 (433)
T ss_dssp             TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-EE-EEEECCCTTCSSCCBCEETT
T ss_pred             CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-CE-EEEEeCCCCCccccCCCccc
Confidence            00000000000011111236888         6777777777778889999853 3 22 222111              


Q ss_pred             ----CCceeEEEEc-CCCCceeeecCCCeEEE
Q 010287          440 ----KNPMRRQVQT-PSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       440 ----~~~v~~~~~~-~~~~~l~~~~~d~~i~~  466 (513)
                          ......+++. +++.++++-..++.|+.
T Consensus       397 ~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~  428 (433)
T 4hw6_A          397 SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK  428 (433)
T ss_dssp             TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred             cccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence                1224577888 55555555555555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.84  E-value=0.019  Score=53.14  Aligned_cols=191  Identities=9%  Similarity=-0.049  Sum_probs=111.5

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      .+..++|++.+..|+.+  ..+.|..+++..... ..++       .........+++.+.+..++++-...+.|.+.++
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~  188 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  188 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence            37789999866666655  588999999875432 1111       1112345678888765466677677788888887


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      .....    ...+..            .......++++|.+..|+..+.   +.|..+++.  +.....+......    
T Consensus       189 dg~~~----~~l~~~------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~----  246 (386)
T 3v65_B          189 DGAHR----KVLLWQ------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF----  246 (386)
T ss_dssp             TSCSC----EEEECS------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS----
T ss_pred             CCCce----EEeecC------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC----
Confidence            54321    111111            1135788999997776666543   667777766  4433333211100    


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                .-..++|+|++..|+.+ +..+.|..+++... .....+.........+++ ..+.++.+....+.|..
T Consensus       247 ----------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          247 ----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS  313 (386)
T ss_dssp             ----------CEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             ----------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence                      01379999877766654 45678999998743 222333333333456666 34455555555566555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.012  Score=55.36  Aligned_cols=71  Identities=11%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ...++++| ++.++++- ..+.|..++....... .+.     ... .......++|+|++..++++-...+.|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~-----~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLF-----TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEE-----ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-----EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            56788999 56655555 6889999998754321 111     111 124568999999993366666678899998865

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.018  Score=54.07  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CeEEEEeccCCCEEEEE-c-CC----eEEEEEcCCCcce-eeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCc
Q 010287          234 HINSISNNSDGETFISA-D-DL----RINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS  305 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~-d~----~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~  305 (513)
                      ....++|+++++.|+.+ . ++    .+...+.. +... ..       .+. .......++++| ++ .++++-..++.
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~-------~l~-~~~~p~giavdp~~g-~lyv~d~~~~~  249 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVIT-------ELT-KGQNCNGAETHPING-ELYFNSWNAGQ  249 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEE-------EEE-ECSSCCCEEECTTTC-CEEEEETTTTE
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeee-------eec-cCCCceEEEEeCCCC-EEEEEECCCCE
Confidence            36789999999966665 2 22    23334433 2211 01       111 123457888999 55 77777777889


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN  369 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~  369 (513)
                      |..++...+...    .......           ......++|+|++++|+.++ . +.|..++..
T Consensus       250 V~~~~~~~~~~~----~~~~~~~-----------~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          250 VFRYDFTTQETT----PLFTIQD-----------SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEETTTTEEE----EEEECSS-----------SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCcEE----EEEEcCC-----------CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            999998755421    1111100           12467899999999666654 3 899998876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.80  E-value=0.0046  Score=55.92  Aligned_cols=196  Identities=11%  Similarity=0.054  Sum_probs=107.6

Q ss_pred             eEEEEeccCCCEEEEE-------------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--CCC-eEEE
Q 010287          235 INSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NMLA  298 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~l~  298 (513)
                      .-.+...++|..++++             .+|.|.++|+.+.......+.+....+.........+.+.+  ++. ++++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3456677877777765             58999999987432222211111000122334667777766  342 2444


Q ss_pred             EEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----------------
Q 010287          299 YSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----------------  360 (513)
Q Consensus       299 ~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----------------  360 (513)
                      +-..  +..|.+|++.........+..+++...           ...+.+.+.++|.+.++..-                
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~-----------~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-----------PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL  200 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTC-----------SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCC-----------CCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence            4333  567888887654332233334443221           46889999999998887531                


Q ss_pred             CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccc--eeec
Q 010287          361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES--TTLE  437 (513)
Q Consensus       361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~--~~~~  437 (513)
                      ..=.+|.+.. ++ +..+...-..               -..++|+||++.|+.+. ..+.|+.|++.......  ..+.
T Consensus       201 ~~g~vyr~d~-~~-~~~~~~~l~~---------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~  263 (355)
T 3sre_A          201 AWSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS  263 (355)
T ss_dssp             CCEEEEEECT-TC-CEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CccEEEEEEC-Ce-EEEeecCCcc---------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence            1223444332 22 2211111000               13799999998877654 57899999986432221  2232


Q ss_pred             CCCCceeEEEEcC-CCCceeeec
Q 010287          438 ASKNPMRRQVQTP-SRPSRPLGS  459 (513)
Q Consensus       438 ~~~~~v~~~~~~~-~~~~l~~~~  459 (513)
                       .....-.+++.+ +|.+.+++.
T Consensus       264 -~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          264 -FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             -CSSEEEEEEECTTTCCEEEEEE
T ss_pred             -CCCCCceEEEeCCCCcEEEEec
Confidence             233455788888 488776554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.80  E-value=0.018  Score=51.64  Aligned_cols=158  Identities=10%  Similarity=-0.023  Sum_probs=93.0

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~  311 (513)
                      ...+++.+.+..|+.+  ..+.|.+.++.... ...+.       .........++++|.+..++.+.... +.|...++
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~  150 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence            4678888755555554  58899999987432 22211       11234678999999763555554333 67888876


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ....     ...+-..           .......++++|++..|+.++.  +.|..+|+.  +...+.+.......    
T Consensus       151 dG~~-----~~~~~~~-----------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~----  208 (316)
T 1ijq_A          151 NGVD-----IYSLVTE-----------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL----  208 (316)
T ss_dssp             TSCC-----EEEEECS-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT----
T ss_pred             CCCC-----eEEEEEC-----------CCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCcc----
Confidence            4322     1111100           1135788999998887777664  899999987  33333332110000    


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                              ..-..+++. .+.++++-...+.|..++..+++.
T Consensus       209 --------~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          209 --------AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             --------SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             --------CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence                    001256775 355555666778899999876643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.76  E-value=0.028  Score=52.81  Aligned_cols=182  Identities=11%  Similarity=0.020  Sum_probs=93.1

Q ss_pred             eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ...++++| ++.++++- .++.|+.++..++.....+..      .+.......++|+|++..++++-...+.|..++..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            45688899 56555554 578899999875543122211      11122234799999993366666667899998865


Q ss_pred             C--cccccccceeeccc-cCCCCc--cccccccccEEEEEE---------eecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287          313 Q--SALCDTHSKLFEEQ-EAPGTR--SFFTEIIASISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       313 ~--~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~i~~---------sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~  377 (513)
                      .  +...  ....+-+. ......  ......-.....+++         .+++.+.++-.. +.|+.++..  + .+.+
T Consensus       304 ~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t  378 (433)
T 4hw6_A          304 RETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTT  378 (433)
T ss_dssp             TTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEE
T ss_pred             CCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEE
Confidence            2  2211  01111111 000000  000011134677888         566666655444 888888743  4 3344


Q ss_pred             eecccc--ccccccc-ccccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecC
Q 010287          378 FQVHEH--LRPKLCD-LYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       378 ~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +.+...  ....... ......+..-..++++ +++.++++-..++.|+.++++
T Consensus       379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            433211  0000000 0000111122478999 666666666667788887764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.76  E-value=0.0031  Score=63.13  Aligned_cols=62  Identities=6%  Similarity=0.068  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc
Q 010287          303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      +|.|..||+.+++...+.    ...             .......+...+.+++.++. +.|+.||.++ ++.+..+...
T Consensus       437 ~g~l~A~D~~tG~~~W~~----~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKV----PYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEE----EES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEc----cCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence            477889999888764331    111             12222334556778888774 9999999997 8888777665


Q ss_pred             c
Q 010287          382 E  382 (513)
Q Consensus       382 ~  382 (513)
                      .
T Consensus       499 ~  499 (668)
T 1kv9_A          499 S  499 (668)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.74  E-value=0.023  Score=51.17  Aligned_cols=232  Identities=10%  Similarity=0.064  Sum_probs=121.2

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      .+.++.+.+ +..++.+..+.|..  ...+....+...    ....+...+..+.+.+++ ..++.+ .+|.|.  ....
T Consensus        81 ~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~--~S~D  149 (327)
T 2xbg_A           81 RFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIP----LDPKLPGSPRLIKALGNG-SAEMIT-NVGAIY--RTKD  149 (327)
T ss_dssp             EEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECC----CCTTCSSCEEEEEEEETT-EEEEEE-TTCCEE--EESS
T ss_pred             cEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECc----cccCCCCCeEEEEEECCC-CEEEEe-CCccEE--EEcC
Confidence            367788876 55555566675443  333333333211    001123446778877766 666554 456442  2222


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEE-EEccCCCCCeeeeeccccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      +-..      +....        ..+...+..+.+.|++.+++.+..+.+.. .|-.  +.....+.....         
T Consensus       150 gG~t------W~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~~~---------  204 (327)
T 2xbg_A          150 SGKN------WQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRTTS---------  204 (327)
T ss_dssp             TTSS------EEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECCSS---------
T ss_pred             CCCC------CEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCCCC---------
Confidence            1111      11110        01124688899999999888877654433 3321  233332221110         


Q ss_pred             ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec----CCCCceeEEEEcCCCCceeeecCCCeEEE-e
Q 010287          393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-V  467 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~  467 (513)
                           ..+..+.+.++++.++ .+.+|.+++.+...+ ..-..+.    .....+..+.+.+++..++.+. ++.+.. .
T Consensus       205 -----~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~  276 (327)
T 2xbg_A          205 -----RRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQ  276 (327)
T ss_dssp             -----SCEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEES
T ss_pred             -----CccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeC
Confidence                 0134788899887664 455787777642212 1111111    1223577888888888777765 666655 4


Q ss_pred             cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287          468 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY  511 (513)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~  511 (513)
                      ++...+..  ..........+.++.|.+++..++++.++.++-+
T Consensus       277 DgG~tW~~--~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          277 DGGQTWQQ--DVDVKKVPSNFYKILFFSPDQGFILGQKGILLRY  318 (327)
T ss_dssp             STTSSCEE--CGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred             CCCcccEE--cCccCCCCCCeEEEEEECCCceEEEcCCceEEEE
Confidence            44444421  1101112456789999877777777777666544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.72  E-value=0.073  Score=56.53  Aligned_cols=101  Identities=11%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccC
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSM  486 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~  486 (513)
                      +| +|++|- ...|++|++...+.+....... ..+..+.....+.+++.|..-..+.+.. .+.....+..-..+ ...
T Consensus       895 ~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~-y~~~~~~L~~~a~D~~~~  970 (1158)
T 3ei3_A          895 NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLA-YKPMEGNFEEIARDFNPN  970 (1158)
T ss_dssp             TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEE-EETTTTEEEEEEECCSCB
T ss_pred             CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEE-EEcCCCeEEEEEeecccc
Confidence            44 444443 4789999998653222111111 1122333334567888887776666611 11110011111111 245


Q ss_pred             CeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          487 KLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       487 ~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .++++.+--++.++++-..++++++.
T Consensus       971 ~vta~~~ld~~t~l~aD~~gNl~vl~  996 (1158)
T 3ei3_A          971 WMSAVEILDDDNFLGAENAFNLFVCQ  996 (1158)
T ss_dssp             CEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             cEEEEEEEccCcEEEEcCCCcEEEEe
Confidence            68888887777666666677777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.68  E-value=0.022  Score=55.84  Aligned_cols=85  Identities=9%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             EEEEeCCCCeEEEEEeCC----------------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          286 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       286 ~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      .+++.+.. .+++.+..+                +.|..+|.++++....    ++......  --+.....++. +...
T Consensus       245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~--wd~d~~~~p~l-~d~~  316 (599)
T 1w6s_A          245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG----YQKTPHDE--WDYAGVNVMML-SEQK  316 (599)
T ss_dssp             CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE----EESSTTCS--SCCCCCCCCEE-EEEE
T ss_pred             ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE----eecCCCcc--ccccCCCccEE-Eecc
Confidence            45666766 566666654                3788999999887443    11110000  00001112222 2222


Q ss_pred             -ecC---CEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287          350 -RNG---RHILSRDY-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       350 -p~~---~~l~~~~~-~~v~iwd~~~~~~~~~~~~  379 (513)
                       .+|   ..++.++. |.++++|.++ ++++....
T Consensus       317 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~  350 (599)
T 1w6s_A          317 DKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK  350 (599)
T ss_dssp             CTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             ccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence             467   45555665 9999999987 77765543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.54  E-value=0.097  Score=53.10  Aligned_cols=159  Identities=11%  Similarity=0.004  Sum_probs=93.0

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd  310 (513)
                      ....|++.+.++.|+.+  ..+.|.+.++.... ...++       .........|+++|....++.+-... +.|.+.+
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~-------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE-------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence            35678888877666666  48899999987433 22211       12234578999999763555544333 6788888


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc-cccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRPK  387 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~-~~~~~~  387 (513)
                      +.....     +.+-.           ........|++++.+..|+.++.  ..|..+++.  +.....+... ....  
T Consensus       544 ~dG~~~-----~~lv~-----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~--  603 (791)
T 3m0c_C          544 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA--  603 (791)
T ss_dssp             TTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS--
T ss_pred             cCCCce-----EEEEe-----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccC--
Confidence            754321     11111           11146788999987777777653  788888886  4443333211 1110  


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                 .-+.+++..+ .++++-...+.|...+..+++..
T Consensus       604 -----------~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          604 -----------HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             -----------SEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred             -----------CCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence                       0125555432 33445456678888887766443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.52  E-value=0.058  Score=50.07  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=93.8

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLID  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd  310 (513)
                      ....+++.+.+..|+.+  ..+.|.+.+++... ...+       +.........++++|.+..++.+-.. .+.|...+
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l-------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~  231 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  231 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEE-------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEE-------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence            36788888855555555  57899999987433 2221       12223457899999976355544423 47788888


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc-cccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRPK  387 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~-~~~~~~  387 (513)
                      +.....     ..+-.           ........|++++++..|+.++.  +.|..+|+.  +.....+... ....  
T Consensus       232 ~dG~~~-----~~~~~-----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l~--  291 (400)
T 3p5b_L          232 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA--  291 (400)
T ss_dssp             TTSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTTS--
T ss_pred             CCCCcc-----EEEEE-----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCCC--
Confidence            754321     11110           01135788999998888877663  889999986  3333333211 1100  


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                 .-..+++. .+.++++-...+.|..++..+++..
T Consensus       292 -----------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          292 -----------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             -----------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             -----------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence                       01256663 3345556667788999997777443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.49  E-value=0.057  Score=49.10  Aligned_cols=191  Identities=9%  Similarity=-0.052  Sum_probs=111.8

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      .+..++|++..+.|+.+  ..+.|..+++...... .+.       .........+++.+.+.+++++-...+.|.+.++
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            36789999876666655  5889999998754322 111       1112345788999865467777777889999997


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      .....     ..+..           ........++++|.+..|+..+  . +.|..+++.  +.....+......    
T Consensus       146 dG~~~-----~~l~~-----------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~----  203 (349)
T 3v64_C          146 DGAHR-----KVLLW-----------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF----  203 (349)
T ss_dssp             TSCSC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCS----
T ss_pred             CCCce-----EEEEe-----------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC----
Confidence            64321     11110           0113568899999766666544  2 667777776  4333332111100    


Q ss_pred             ccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                                .-..++++|++..|+.+ ...+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus       204 ----------~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~  270 (349)
T 3v64_C          204 ----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS  270 (349)
T ss_dssp             ----------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             ----------CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence                      01379999877766654 45678999998743 222233333333456666 34444455445555544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.47  E-value=0.051  Score=48.06  Aligned_cols=212  Identities=9%  Similarity=0.043  Sum_probs=115.0

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccc--c-ccCCeEEEEE---eCCCCeEEEEEe-----
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME--D-LTEVITSAEF---HPTHCNMLAYSS-----  301 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~---~~~~~~~l~~~~-----  301 (513)
                      .-+++|++....|..+  ..++|..|+...+.. ..+ .+.  .+.  + ....+..+.|   .|++ .++++..     
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af   89 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF   89 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence            4578898855555555  599999999874332 222 110  100  1 1124579999   6886 7777544     


Q ss_pred             --------CCCcEEEEEcC---CcccccccceeeccccCCCCcccccc-ccccEEEEEEeecCCEEEEEeC--CeEEEEE
Q 010287          302 --------SKGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDY--MTLKLWD  367 (513)
Q Consensus       302 --------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd  367 (513)
                              .+..+..||+.   +++....  ..+......  .....+ -......++..++|...++++.  +.|...+
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~--~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWS--VNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEE--EESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEE--ecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                    26789999998   6654221  011100000  000000 0124789999999998888663  5544444


Q ss_pred             ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec--CC---CCc
Q 010287          368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KNP  442 (513)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~---~~~  442 (513)
                      ..  ++.+..+........         .....+.++++|+|+.|++....|.|..+|+.........+.  +.   ...
T Consensus       166 pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~  234 (334)
T 2p9w_A          166 AD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSG  234 (334)
T ss_dssp             TT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTT
T ss_pred             CC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccC
Confidence            43  554443322111100         011234899999999888877799999999884322001121  21   112


Q ss_pred             eeE-EEEcCCCCc-eeeecCCCeEEE
Q 010287          443 MRR-QVQTPSRPS-RPLGSLSGVVRR  466 (513)
Q Consensus       443 v~~-~~~~~~~~~-l~~~~~d~~i~~  466 (513)
                      ... +....+|+. |++.+..+.+.+
T Consensus       235 ~dgilp~~~~G~vllV~~~~~~~~~l  260 (334)
T 2p9w_A          235 TEKIVTVPVGNESVLVGARAPYAISF  260 (334)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             cccccccccCCEEEEEEcCCCCEEEE
Confidence            223 344457777 445555666555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.45  E-value=0.065  Score=48.79  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeCC-----Cc
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----GS  305 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d-----g~  305 (513)
                      ....++|.|+|+++++-.++.|.+++ . +. ...+.++.  ...........++++|+   +..++++-...     ..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            46799999999977766679999998 2 32 11111111  11122456889999998   42555554433     67


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      |..|+...+... .....+.......    -..|  ....++|.|||.+.++-
T Consensus       107 v~r~~~~~~~~~-~~~~l~~~~p~~~----~~~h--~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGV-LDRVVLDGIPARP----HGLH--SGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEECCCT----TCCC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcC-ceEEEEEeCCCCC----CCCc--CCceEEECCCCCEEEEE
Confidence            777877643211 1011111110000    0112  23579999999777763

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.34  E-value=0.042  Score=48.56  Aligned_cols=173  Identities=9%  Similarity=0.070  Sum_probs=99.7

Q ss_pred             ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE---eecCCEEE
Q 010287          280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHIL  356 (513)
Q Consensus       280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---sp~~~~l~  356 (513)
                      ......++.|++..+.++++.-..+.|..||...+....  + .+.....+.      .....+..+.|   .|++++++
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEE
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEE
Confidence            344456889998663555655579999999986543211  1 122100000      00023578999   68888888


Q ss_pred             EEe--------------CCeEEEEEcc---CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-
Q 010287          357 SRD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-  418 (513)
Q Consensus       357 ~~~--------------~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  418 (513)
                      +..              +..|..||+.   + ++.+........... ..... .........++..++|+..++++.. 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~-~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDE-FEKKA-GKRPFGVVQSAQDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHH-HHHHH-SSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccccc-ccccc-cccccCCceeEECCCCCEEEeCCCCC
Confidence            544              3678999988   5 555544332110000 00000 0001113489999999999988888 


Q ss_pred             CcEEEEecCCCCccceee--cC----CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          419 NLFRVFGCSEGSAESTTL--EA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~--~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +.|...+....  ....+  ..    ...-.+.+++.|+++.|+.....|.+..
T Consensus       159 ~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~  210 (334)
T 2p9w_A          159 PAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTA  210 (334)
T ss_dssp             CEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred             CeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence            88777666532  22221  11    1122458999999998877766887765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.23  E-value=0.11  Score=46.55  Aligned_cols=192  Identities=10%  Similarity=-0.020  Sum_probs=108.6

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCC---cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      .+.+++|++.++.|+.+  ..+.|..+++...   .....+       +.........+++.+.+.+++++-...+.|.+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~  103 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence            36789999876666655  5789999998751   111111       11122345789998755366677677889999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      +|+.....     ..+-..           .......++++|.+..|+..+  . +.|..+++.  +.....+...... 
T Consensus       104 ~~~~g~~~-----~~~~~~-----------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~-  164 (316)
T 1ijq_A          104 ADTKGVKR-----KTLFRE-----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ-  164 (316)
T ss_dssp             EETTSSSE-----EEEEEC-----------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCS-
T ss_pred             EeCCCCce-----EEEEEC-----------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEECCCC-
Confidence            99764321     111110           113568899999766655543  2 678777775  4444333211100 


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCC
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG  462 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~  462 (513)
                                   .-..++++|++..|+.+. ..+.|..+|+... ........  .......+++. .+.++.+....+
T Consensus       165 -------------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          165 -------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             -------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             -------------CceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence                         013799999877766554 5678999998743 22222221  12223456664 344455555555


Q ss_pred             eEEE
Q 010287          463 VVRR  466 (513)
Q Consensus       463 ~i~~  466 (513)
                      .|..
T Consensus       230 ~V~~  233 (316)
T 1ijq_A          230 AIFS  233 (316)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            5554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.22  E-value=0.0034  Score=63.10  Aligned_cols=157  Identities=11%  Similarity=0.001  Sum_probs=84.7

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~  311 (513)
                      ...|++.+.+..|+.+  ..+.|.++++.... ...++       .........++++|.+..++++-... +.|.++++
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            3457777554444444  47889999887432 22211       11123456788998763444443222 67777765


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .....     +.+..           ........|+|+|++..|+.++.  +.|..+++.  +.....+........   
T Consensus       527 dG~~~-----~~l~~-----------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~---  585 (699)
T 1n7d_A          527 NGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA---  585 (699)
T ss_dssp             SSCCC-----CEESC-----------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS---
T ss_pred             CCCCe-----eEEEe-----------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC---
Confidence            43211     11100           00134567999998776666553  889999986  332222221100000   


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                            .   -..+++..+ .++++....+.|..++..+++
T Consensus       586 ------~---P~glavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          586 ------H---PFSLAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             ------S---CCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             ------C---ceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence                  0   115566544 445566677899999987663

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.21  E-value=0.12  Score=46.98  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=61.4

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC---C---
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K---  303 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---d---  303 (513)
                      .....++|.|+++++++-.++.|++++.. +.  ..+.++.  ...........++++|+   +..++++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            34789999999987776667999999743 33  1111111  11122356889999997   4255555442   3   


Q ss_pred             -CcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          304 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       304 -g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                       ..|..|+...... .......+.....      -..|  ....+.|.|||.+.++
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence             5677777654310 0000111111000      0112  2356899999987776

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.20  E-value=0.066  Score=52.43  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc
Q 010287          303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~  381 (513)
                      +|.|.-||+.+++...+.    ...             .++..-.....+.+++.++ ++.++.||.++ ++.+-.++..
T Consensus       465 ~G~l~A~D~~tG~~~W~~----~~~-------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEH----KEH-------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEEEE----EES-------------SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cceEEEEECCCCCEEEEe----cCC-------------CCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence            577888888888764331    110             0111111222456666676 49999999997 8888877665


Q ss_pred             cc
Q 010287          382 EH  383 (513)
Q Consensus       382 ~~  383 (513)
                      ..
T Consensus       527 ~g  528 (582)
T 1flg_A          527 SG  528 (582)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.17  E-value=0.26  Score=50.00  Aligned_cols=183  Identities=7%  Similarity=-0.089  Sum_probs=105.5

Q ss_pred             EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      +|+.+....|+..++...... .        +......+..++|++.+..++++-...+.|+.+++............+.
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~-~--------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCE-E--------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             ccccccccceeEeeccCCcce-e--------eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            555555567887777643321 1        1223456789999986546666666678898888764321000011111


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                                  ........|++.+.+..|+..+.  +.|.+.++.  +.....+......              ....|
T Consensus       468 ------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI  519 (791)
T 3m0c_C          468 ------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI  519 (791)
T ss_dssp             ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred             ------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence                        01134677999988877776653  899999987  4444444221110              01379


Q ss_pred             EEeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEE
Q 010287          404 CLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       404 ~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      ++.|.+.+|+... . .+.|...++... .....+.........+++.+....|..+ .....|..
T Consensus       520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~  584 (791)
T 3m0c_C          520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  584 (791)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence            9999876666554 2 267888888643 3323333344567789999776665544 44556655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.14  E-value=0.13  Score=46.11  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=122.6

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ..+.++.|.+++..++++..+.|  |....+....+....   ........+.++.+.+ + ..++. +.++.|..  ..
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~~--S~  105 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIMLH--TT  105 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEEE--ES
T ss_pred             CcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEEE--EC
Confidence            45889999888888887777765  322333333322110   1112244688999987 3 55554 55664433  22


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      .+-...+.+..   .         ..+.+.+..+.+.+++..++++..+.|  |.....++..........         
T Consensus       106 DgG~tW~~~~~---~---------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~---------  162 (327)
T 2xbg_A          106 DGGQSWSQIPL---D---------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI---------  162 (327)
T ss_dssp             STTSSCEECCC---C---------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC---------
T ss_pred             CCCCCceECcc---c---------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC---------
Confidence            22111111110   0         001134677887777777777665543  222222444333321110         


Q ss_pred             ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe--cCC
Q 010287          393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGA  470 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~--~~~  470 (513)
                           ..+..+.+.|++.+++.+...+.++-+|-. +..-...-......+..+.+.+++..++.+ .+|.+.+.  ++.
T Consensus       163 -----~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G  235 (327)
T 2xbg_A          163 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNS  235 (327)
T ss_dssp             -----CCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEE
T ss_pred             -----cceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCC
Confidence                 013478899999888776544333333321 111111112344567788889988766554 46777662  112


Q ss_pred             CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287          471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY  509 (513)
Q Consensus       471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~  509 (513)
                      ..+.. .....+.....+.++++.|++.+++++..+.++
T Consensus       236 ~tW~~-~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~  273 (327)
T 2xbg_A          236 ENWGE-LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL  273 (327)
T ss_dssp             EEECC-CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred             CeeEe-ccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence            22210 110001123458999999999988888776664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.09  E-value=0.14  Score=45.65  Aligned_cols=156  Identities=12%  Similarity=0.002  Sum_probs=91.6

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~  311 (513)
                      ...+++.+.+..|+.+  ..+.|.++++...... .+       +.........+++.|.+..++.+-. ..+.|...++
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence            5578888755555554  5789999998743221 11       1123355789999987634444432 3577888876


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .....     ..+-..           .......++++|++..|+.++.  +.|..+|+.  +...+.+......     
T Consensus       153 dG~~~-----~~~~~~-----------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~-----  209 (318)
T 3sov_A          153 DGSSR-----FIIINS-----------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLP-----  209 (318)
T ss_dssp             TSCSC-----EEEECS-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCS-----
T ss_pred             CCCCe-----EEEEEC-----------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCC-----
Confidence            53221     111100           0135688999998877777653  889999986  3333333210100     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA  431 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  431 (513)
                            .   -..+++.. +.++.+-...+.|..++..+++.
T Consensus       210 ------~---P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          210 ------H---PFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             ------C---EEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             ------C---ceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence                  0   12566653 34455666778899999877744

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.06  E-value=0.15  Score=45.45  Aligned_cols=149  Identities=7%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             CCeEEEEEcCCCcceeeec-ccCccccccccCCeEEEEE--eCCCC-eEEEEEeCCCcEEEEEcC---Ccccccccceee
Q 010287          252 DLRINLWNLEISNQSFNIV-DVKPANMEDLTEVITSAEF--HPTHC-NMLAYSSSKGSIRLIDMR---QSALCDTHSKLF  324 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~  324 (513)
                      +++|.+|++......+..+ .+. ..+......+..+++  +|... .+++....+|.+..|++.   .+....+.++.|
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~-~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPD-HPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTT-SCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccc-cCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            6899999774222222221 000 000011145666777  67442 367778889999999984   333333445666


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC----CCeeeeecccccccccccccccCCccc
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFD  399 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      ...             +.+..+...+....|+.+.+ ..|..|+.+...    +.+..+.. .            ....+
T Consensus       177 ~lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g------------~l~aD  230 (355)
T 3amr_A          177 KMN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-R------------HLTRD  230 (355)
T ss_dssp             ECS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-S------------SBCSC
T ss_pred             cCC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-C------------ccccC
Confidence            543             45788999998888888876 446555644211    12222211 1            11112


Q ss_pred             eeeEEE--eCCCC-EEEEEe-CCCcEEEEecC
Q 010287          400 KFECCL--SGDGG-RVATGS-YSNLFRVFGCS  427 (513)
Q Consensus       400 v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~~  427 (513)
                      +..+++  .++++ ||++++ .++++.+||..
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            346666  55666 677666 56799999997

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.02  E-value=0.17  Score=45.21  Aligned_cols=191  Identities=6%  Similarity=-0.107  Sum_probs=109.8

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +.+++|++..+.|.-+  ..+.|..+++........+       +.........+++.+.+.+++.+-...+.|.++++.
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  109 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence            6789999866666555  5889999998755321111       111123467899997554777776778899999976


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ....     ..+..           ........++++|.+..|+..+  . +.|...++.  +.....+....-.     
T Consensus       110 G~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l~-----  166 (318)
T 3sov_A          110 GSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIY-----  166 (318)
T ss_dssp             SCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS-----
T ss_pred             CCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCCC-----
Confidence            4321     11110           0113568899999766666544  2 677777776  4433333211100     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                               .-..++++|++..|+.+ +..+.|..+++... ...............+++.. +.++.+-...+.|..
T Consensus       167 ---------~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          167 ---------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             ---------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             ---------CccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence                     01379999977766654 46788999998743 22222332233334555542 334444444455544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.99  E-value=0.14  Score=46.85  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             eccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287          240 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  317 (513)
Q Consensus       240 ~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  317 (513)
                      ...++..++.+.++.||.-++.... .++.+     ....  ....|..+..+|+| .+|+.. .+..|.|-.+..+...
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L-----~~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDS-LYHSL-----NFSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYSN   99 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCS-SCEEE-----ECTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCSC
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCC-cceEE-----ecCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCcccc
Confidence            4557888888888999988887443 33332     2221  12257789999999 777776 4568888888743211


Q ss_pred             cc--------cceeeccccCCCCccccccccccEEEEEEee---cCCEEEEE-eCCeEEEEEccCC-CCCeeeeeccccc
Q 010287          318 DT--------HSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-DYMTLKLWDINMD-SGPVATFQVHEHL  384 (513)
Q Consensus       318 ~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~-~~~~v~iwd~~~~-~~~~~~~~~~~~~  384 (513)
                      ..        ..+.+.....      ......+|..+.|+|   .+..|++- +|+.|++||+... .++. .+....  
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~--  170 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN--  170 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC--
T ss_pred             CcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc--
Confidence            11        0112222110      011246899999999   45567764 4699999999852 2233 332111  


Q ss_pred             ccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEE
Q 010287          385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVF  424 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw  424 (513)
                          ..+.....+.++.+++|.+++-.|...+  .+|.|+-.
T Consensus       171 ----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          171 ----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                1111123335577999999887777654  78888654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.95  E-value=0.24  Score=45.89  Aligned_cols=184  Identities=7%  Similarity=-0.087  Sum_probs=106.8

Q ss_pred             CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287          245 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  324 (513)
Q Consensus       245 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  324 (513)
                      .+|+.+....|+..++...... .        +......+..++|++.+..++.+-...+.|..+++............+
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~-~--------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCE-E--------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred             ceeEEeccceeEEEccCCccee-E--------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence            4566666788999998754322 1        122345688999998763566665667889988876422100001111


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                      .            ........+++.+.+..|+..+ . +.|.+.++.  +.....+......              ....
T Consensus       155 ~------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~  206 (400)
T 3p5b_L          155 S------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA  206 (400)
T ss_dssp             C------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred             e------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence            1            1113578899998666565554 3 889988887  4433333211110              0137


Q ss_pred             EEEeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEE
Q 010287          403 CCLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       403 ~~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      +++.|.+.+|+... . .+.|...++... ...............++++++++.|..+ ...+.|..
T Consensus       207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~  272 (400)
T 3p5b_L          207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  272 (400)
T ss_dssp             EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence            89999777666544 2 367888888743 2222333334566789999877766554 44566665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.78  E-value=0.48  Score=46.75  Aligned_cols=202  Identities=14%  Similarity=0.043  Sum_probs=100.4

Q ss_pred             cccEEEEEEcCCCCEEEeec-CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      -.....++|++.+..|..+. ..+.|..+++.+....                      ...+..--            .
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~   84 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L   84 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence            35578899999766666554 4567888886543210                      00011100            3


Q ss_pred             cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  193 (513)
                      ....|++.+. .+.++.+-...+.|.+.++.......+....               ...+..+++.|.+..+.      
T Consensus        85 ~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~Iavdp~~g~ly------  142 (619)
T 3s94_A           85 SPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------------LDQPRAIALDPSSGFMY------  142 (619)
T ss_dssp             CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSS---------------CSCCCCEEEETTTTEEE------
T ss_pred             CcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCC---------------CCCCceEEEecCCCeEE------
Confidence            3667777431 2334444466789999998765433332111               12334667777644331      


Q ss_pred             CCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeec
Q 010287          194 SNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       194 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~  270 (513)
                           ++. +..+.|...++....       +.......-.....++++++++.|..+  ..+.|...++.... ...+.
T Consensus       143 -----~tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~  209 (619)
T 3s94_A          143 -----WTDWGEVPKIERAGMDGSS-------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV  209 (619)
T ss_dssp             -----EEECSSSCEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---
T ss_pred             -----EeccCCCCEEEEEECCCCc-------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEE
Confidence                 111 112233333322111       111111223456889999987777777  47788888887432 22111


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                             .+.......+++..+  .++.+-...+.|...|..++
T Consensus       210 -------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          210 -------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             -------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred             -------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence                   111112235555443  45555455667777776554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.66  E-value=0.17  Score=47.81  Aligned_cols=155  Identities=12%  Similarity=0.021  Sum_probs=89.5

Q ss_pred             CeEEEEEeCC-CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE-------eecCCE
Q 010287          283 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH  354 (513)
Q Consensus       283 ~i~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-------sp~~~~  354 (513)
                      ....|+|+|. +.+++++....+.|++.|+..+.+.    .......         ........++|       ++++..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~----~l~~~~~---------~~~~~p~~ia~~~~~~~~d~~G~~  206 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS----SPLNINT---------IPTNRIRSIAFNKKIEGYADEAEY  206 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE----EEECCTT---------SSCSBEEEEEECCCBTTTBCTTCE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE----EEEccCc---------cccCCCcEEEEeecccccCCCCCE
Confidence            4789999993 4356666555678999998876541    1111110         01135889999       999997


Q ss_pred             EEEEeC-C-------eEEEEEccCCCCCe-----eeeecccccccccccccccCCccceeeEEEeCCCCE-EEEEeCCCc
Q 010287          355 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNL  420 (513)
Q Consensus       355 l~~~~~-~-------~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~  420 (513)
                      |+++++ +       .|.+++....+...     ..+.....                ...++++|++.. +++-..++.
T Consensus       207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~  270 (496)
T 3kya_A          207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ  270 (496)
T ss_dssp             EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred             EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence            777654 3       25566533212221     11211010                127889995555 445557788


Q ss_pred             EEEEecC-------CCCc------c----c-eeec-CCCCceeEEEEcCCCCce-eeecCCCeEEE
Q 010287          421 FRVFGCS-------EGSA------E----S-TTLE-ASKNPMRRQVQTPSRPSR-PLGSLSGVVRR  466 (513)
Q Consensus       421 i~vwd~~-------~~~~------~----~-~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~  466 (513)
                      |+.+|+.       ++..      .    . ..+. +.......++++|+++.| ++-.....|+.
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            9999997       4432      0    0 1111 223445789999999954 44445566655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.50  E-value=0.019  Score=57.64  Aligned_cols=182  Identities=7%  Similarity=-0.069  Sum_probs=95.0

Q ss_pred             EEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287          247 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  326 (513)
Q Consensus       247 l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  326 (513)
                      |+.+..+.|+..++...... .        +......+..++|++.+..++++-...+.|+.+++............+..
T Consensus       380 ll~~~~~~I~~id~~~~~~~-~--------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEE-C--------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred             EEecCccceEEEeCCCCcce-e--------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence            33444567777777643321 1        11123346788999876355555555788999988651100000111100


Q ss_pred             ccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287          327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                                  .......|++.+.+..|+.++ . +.|.++++.  +.....+.......              ...++
T Consensus       451 ------------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~~l~~~~~~~--------------P~gia  502 (699)
T 1n7d_A          451 ------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFREQGSK--------------PRAIV  502 (699)
T ss_dssp             ------------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEEEECCCSSCC--------------CCCEE
T ss_pred             ------------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--CCceEEEEeCCCCC--------------cceEE
Confidence                        002345678886555554443 3 889998876  33333332111000              12788


Q ss_pred             EeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee-eecCCCeEEE
Q 010287          405 LSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVVRR  466 (513)
Q Consensus       405 ~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~  466 (513)
                      ++|.+.+|+... . .+.|.++++... .....+.........++++|+++.|. +-+..+.|..
T Consensus       503 vDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          503 VDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             CCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             EccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            999766555443 2 267887777633 22122222234456899998766554 4445666766

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.42  E-value=0.84  Score=45.08  Aligned_cols=153  Identities=12%  Similarity=0.005  Sum_probs=90.1

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eCCCcEEEEEc
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM  311 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~vwd~  311 (513)
                      ...+++.+.+..|+.+  ..+.|.+.++..... ..+.       ...-.....++++|..+.++.+- +..+.|...++
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLV-------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEE-------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEE-------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence            5578888766666655  478899999874332 1111       12234578999999653554443 22567777776


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .....    ......             ......+++++++..|+.++.  +.|..+|+..  ...+.+......     
T Consensus       154 dG~~~----~~l~~~-------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~-----  209 (628)
T 4a0p_A          154 DGSER----TTLVPN-------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH-----  209 (628)
T ss_dssp             TSCSC----EEEECS-------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC-----
T ss_pred             CCCce----EEEECC-------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC-----
Confidence            54321    111111             145788999998888877664  8899999873  222332211110     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                                -..+++.. +.++++-...+.|...|..+++
T Consensus       210 ----------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          210 ----------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ----------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             ----------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence                      12566654 3444455567888888876653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.39  E-value=0.53  Score=43.10  Aligned_cols=116  Identities=8%  Similarity=0.027  Sum_probs=75.8

Q ss_pred             cEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCee-----------eeecccccccccccccccCCccceeeEEEeCCC-
Q 010287          342 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA-----------TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-  409 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  409 (513)
                      .+..+..+|+|.+|+..+...|.|-.+..+.....           .+.....         ....-.+|..+.|+|-+ 
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~---------~~~~~s~I~qVlWHPl~~  137 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE---------EVGPKSSIKKVLFHPKSY  137 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC---------C--CCCCEEEEEECTTBG
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc---------ccCCCCceeEEEeccccC
Confidence            46779999999999998888999999873111111           1111100         00011236689999954 


Q ss_pred             --CEEEEEeCCCcEEEEecCCCCccceeec---------CCCCceeEEEEcCCCCceee--ecCCCeEEE
Q 010287          410 --GRVATGSYSNLFRVFGCSEGSAESTTLE---------ASKNPMRRQVQTPSRPSRPL--GSLSGVVRR  466 (513)
Q Consensus       410 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~  466 (513)
                        ..|++-..|+.|++||+.........++         .....+.+++|..++-.|..  ...+|.|.-
T Consensus       138 ~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          138 RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence              5899999999999999986322222333         12256778999987765555  557788864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.39  E-value=0.86  Score=44.93  Aligned_cols=158  Identities=8%  Similarity=-0.044  Sum_probs=95.0

Q ss_pred             CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          233 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ..+..++|++.+..|+.+  ..+.|..++++.......+       +.........+++.+.+.+++.+-...+.|.+.+
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-------~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~  112 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN  112 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-------EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence            347789999977777766  4788999998744211111       1222246889999996647777777789999999


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeecccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPK  387 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~  387 (513)
                      +.....     +.+-...           ......|+++|.+..|+..+.   +.|...++.  +.....+......   
T Consensus       113 ~dG~~~-----~~l~~~~-----------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~~~---  171 (619)
T 3s94_A          113 LDGSLR-----KVLFWQE-----------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIY---  171 (619)
T ss_dssp             TTSCSC-----EEEECSS-----------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS---
T ss_pred             CCCCCE-----EEEEeCC-----------CCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEEEeCCCC---
Confidence            865331     1111111           134678999997665555442   566666655  4444333211110   


Q ss_pred             cccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCC
Q 010287          388 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEG  429 (513)
Q Consensus       388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  429 (513)
                                 .-..++++++++.|+.+ ...+.|..+++...
T Consensus       172 -----------~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          172 -----------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             -----------SEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             -----------CCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence                       01379999977666655 45678888888743

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.31  E-value=0.61  Score=42.30  Aligned_cols=56  Identities=9%  Similarity=-0.032  Sum_probs=33.7

Q ss_pred             eEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-----ceeecCCCCceeEEEEcCCCCceeee
Q 010287          402 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-----STTLEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      .++| .+|.++++.-..+.|...++......     ...+-.....+..+++.|+|.++++.
T Consensus       272 G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          272 NLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             ceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            5666 46666666666777887777644211     11111223456788999998766654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.28  E-value=1  Score=44.53  Aligned_cols=198  Identities=12%  Similarity=0.012  Sum_probs=105.9

Q ss_pred             ccEEEEEEcCCCCEEEe-ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        36 ~~V~~v~~sp~g~~lat-g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ..+..|+|++.+..|.. -..++.|..+++.+....                       ..+...-            ..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------------------~v~~~g~------------~~   81 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------------------HVVEFGL------------DY   81 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------------EEECSSC------------SC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------------------EEEeCCC------------CC
Confidence            46789999997655554 446778888886543210                       0011000            23


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      ...|++.+ ..+.++.+-...+.|.+.++.......+....               ...+..+++.|....+.       
T Consensus        82 P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~iavdp~~G~lY-------  138 (628)
T 4a0p_A           82 PEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------------LDSPRALALDPAEGFMY-------  138 (628)
T ss_dssp             CCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------------CCCEEEEEEETTTTEEE-------
T ss_pred             cceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------------CCCcccEEEccCCCeEE-------
Confidence            55666632 12334455466788888888765332222111               12234666776444331       


Q ss_pred             CCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecc
Q 010287          195 NDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       195 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~  271 (513)
                          ++. +..+.|...++.....       .... ..-.....++++++++.|..+  ..+.|...++.....  +++ 
T Consensus       139 ----~tD~g~~~~I~r~~~dG~~~-------~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-  203 (628)
T 4a0p_A          139 ----WTEWGGKPKIDRAAMDGSER-------TTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-  203 (628)
T ss_dssp             ----EEECSSSCEEEEEETTSCSC-------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-
T ss_pred             ----EeCCCCCCEEEEEeCCCCce-------EEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-
Confidence                111 1133444444332221       1111 223457899999988888877  478899999875433  221 


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                            .........+++.. + .++.+-...+.|...|..++
T Consensus       204 ------~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          204 ------ADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             ------EECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred             ------eccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence                  11223455777765 3 56666556777777775544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.84  E-value=1  Score=40.80  Aligned_cols=58  Identities=7%  Similarity=-0.047  Sum_probs=36.6

Q ss_pred             eeEEEe-------CCCCEEEEEeCCCcEEEEecCCCCccc--ee-ecCCCCceeEEEEcCCCCceeee
Q 010287          401 FECCLS-------GDGGRVATGSYSNLFRVFGCSEGSAES--TT-LEASKNPMRRQVQTPSRPSRPLG  458 (513)
Q Consensus       401 ~~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~l~~~  458 (513)
                      ..+.|.       .+|.++++.-..+.|...++.......  .. +......+..+++.|+|.++++.
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            367773       467777766677888888887532221  12 22224457789999998766655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.73  E-value=0.16  Score=41.79  Aligned_cols=146  Identities=5%  Similarity=-0.116  Sum_probs=80.1

Q ss_pred             cEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          342 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      .+..++|+|+|.+.++ .+|.++-.+..+ ... .........+.   ..-++    ...++.|.|+|.+.++  .||.|
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t-~~~-~~W~~s~t~IG---~~Gw~----~F~a~~fD~~G~LYav--~dG~i  109 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPT-HDN-DNWMGRAKKIG---NGGWN----QFQFLFFDPNGYLYAV--SKDKL  109 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCC-STT-CCHHHHCEEEE---CSCGG----GCSEEEECTTSCEEEE--ETTEE
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCC-CCc-ccccccccEec---ccccc----cceEEEECCCCCEEEe--CCCEE
Confidence            5679999999997777 668766555432 111 11111110000   00000    0127889999987777  56988


Q ss_pred             EEEecCCCCccc-----eee-cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc--c-c-CCccc--cccCCee
Q 010287          422 RVFGCSEGSAES-----TTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--D-A-NGNAF--DFSMKLL  489 (513)
Q Consensus       422 ~vwd~~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~-~-~~~~~--~~~~~i~  489 (513)
                      +-++..+.....     ..+ ..--..+..+.+.|+|.+.+..  |+.+.-  ...+...  . + ....+  +....-+
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCCcceEE
Confidence            877764322211     111 1122467889999999998888  676543  1222100  0 0 00010  1223456


Q ss_pred             EEEEeCCCCEEEEE
Q 010287          490 HLAWHPSENSIACA  503 (513)
Q Consensus       490 ~~~~sp~~~~la~~  503 (513)
                      .+.|.|++.+.++.
T Consensus       186 ~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEe
Confidence            68899999998877

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.48  E-value=1.4  Score=39.88  Aligned_cols=118  Identities=10%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             CCeEEEEeccCCC-EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC------
Q 010287          233 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------  302 (513)
Q Consensus       233 ~~v~~~~~~~~~~-~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~------  302 (513)
                      .....++|.|+++ ++++-..|.|++++.. +.....+.++ +............++++|+   +..++++-+.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-CCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-cccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3468999999999 7766667999999854 2211111111 0011122345789999995   3255555433      


Q ss_pred             -CCcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          303 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       303 -dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                       ...|..|++..... .......+......    .-..|.  -..+.|.|||.+.++-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~----~~~~h~--~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKL----STGNHF--GGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCC----BSSSCC--CCCEEECSSSEEEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCC----CCCccc--CccEEECCCCcEEEEE
Confidence             23565566543211 00001111111000    001122  3569999999766663

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.47  E-value=1.4  Score=39.76  Aligned_cols=73  Identities=10%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             cCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEE
Q 010287          281 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSR  358 (513)
Q Consensus       281 ~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~  358 (513)
                      -...+.++|+||+..++++-+..+.|..|++.. +....  .+.+..             .+..-.+++.+ +|.+.+++
T Consensus       220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~-------------~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--LRVLSF-------------DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEC-------------SSEEEEEEECTTTCCEEEEE
T ss_pred             CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--CEEEeC-------------CCCCceEEEeCCCCcEEEEe
Confidence            345789999999955555666788999999863 22211  122211             14577889999 59888866


Q ss_pred             e-C-CeEEEEEc
Q 010287          359 D-Y-MTLKLWDI  368 (513)
Q Consensus       359 ~-~-~~v~iwd~  368 (513)
                      . + +.|..|+.
T Consensus       285 ~~~g~~v~~~~P  296 (355)
T 3sre_A          285 HPNGMRIFFYDA  296 (355)
T ss_dssp             ESCHHHHHSCCT
T ss_pred             cCCceEEEEECC
Confidence            4 3 45544543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.34  E-value=1.6  Score=39.56  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEe
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFER   64 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~   64 (513)
                      .....|+|.|+|++|.++...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            45589999999983444556789998874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.23  E-value=0.6  Score=38.44  Aligned_cols=158  Identities=7%  Similarity=-0.116  Sum_probs=81.8

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCe
Q 010287          283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT  362 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~  362 (513)
                      .+..++|+|++ .+.+.  .+|.+.-.+..+...     ..+-.....   .--.+- ....++.|.|+|.+.++ ++|.
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~---IG~~Gw-~~F~a~~fD~~G~LYav-~dG~  108 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKK---IGNGGW-NQFQFLFFDPNGYLYAV-SKDK  108 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCEE---EECSCG-GGCSEEEECTTSCEEEE-ETTE
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccccE---eccccc-ccceEEEECCCCCEEEe-CCCE
Confidence            56799999988 66665  777766655543221     001000000   000000 11477899999998888 7788


Q ss_pred             EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-----cceeec
Q 010287          363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTTLE  437 (513)
Q Consensus       363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~  437 (513)
                      |+-++-.+.+..  ........+       ......++..+.|.|+|.+.+..  |+.++-....+...     ....+.
T Consensus       109 iyr~~pP~~~~~--~Wl~~a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g  177 (236)
T 1tl2_A          109 LYKASPPQSDTD--NWIARATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG  177 (236)
T ss_dssp             EEEESCCCSTTC--CHHHHSEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred             EEEeCCCcCCCC--ceeccccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec
Confidence            877765321111  110000000       00011124589999999877666  77754433332211     011112


Q ss_pred             -CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          438 -ASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       438 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                       ......+.+.+.+++.+.+..  ++.+..
T Consensus       178 ~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~  205 (236)
T 1tl2_A          178 QGGWDTFKFLFFSSVGTLFGVQ--GGKFYE  205 (236)
T ss_dssp             SSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             cCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence             222334456788888877766  776655

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.18  E-value=1.9  Score=39.66  Aligned_cols=166  Identities=7%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             CCeEEEEeccCCCEEEE-E---c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--CCCeEEEEEeC
Q 010287          233 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS  302 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s-~---~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~  302 (513)
                      ..|..-..+++.++++. |   .    .|.+.+|..+.....         .+++|......+....  ....+|..+..
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            34666667788887764 2   1    467889988744322         4577766555544432  11134444444


Q ss_pred             C---CcEEEEEcCCccccc-cc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee
Q 010287          303 K---GSIRLIDMRQSALCD-TH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA  376 (513)
Q Consensus       303 d---g~i~vwd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~  376 (513)
                      .   +.+++-++....... .. .+..+..-.+      ..-..-..++..|+....+..-+. |.+++||+.+ +.++.
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~  294 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY  294 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence            3   788888885431000 00 1111111111      111245677899998777777665 9999999997 77776


Q ss_pred             eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      .-+.....               |+..+-.....-++.-...|.|.--.+...
T Consensus       295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            55544433               234444444445555557777766665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.04  E-value=1.4  Score=41.40  Aligned_cols=117  Identities=11%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             CCeEEEEeccCCCEEEEEcC-CeEEEEEcCCCcceeeecccCcccc--ccccCCeEEEEEeCC---CCeEEEEEeC----
Q 010287          233 YHINSISNNSDGETFISADD-LRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT---HCNMLAYSSS----  302 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~---~~~~l~~~~~----  302 (513)
                      ...+.++|.|+|+++++-.. +.|++++..++... .+..+. ..+  .........|+|+|+   +..++++-+.    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~-~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVP-EIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECT-TCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCC-ccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34679999999998887754 57888876543321 111111 011  113456789999995   4255555442    


Q ss_pred             --------CCcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          303 --------KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       303 --------dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                              ...|.-|++..... .......+.....      -..|  ....|.|.|||.+.++..
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEEC
Confidence                    23455555432210 0110111211110      0112  468899999998877743

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.85  E-value=2.1  Score=38.42  Aligned_cols=119  Identities=11%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             EeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCccee-eec-------c-cCc-cccccccCCeEEEEEeCCC
Q 010287          226 IYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF-NIV-------D-VKP-ANMEDLTEVITSAEFHPTH  293 (513)
Q Consensus       226 ~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~-~~~-------~-~~~-~~~~~~~~~i~~~~~~~~~  293 (513)
                      .+..+|.. ...++|+|+++++++-  .++.-.|-.+..+...- ...       . ..| ..+..+......++|.. +
T Consensus       196 i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g  273 (347)
T 3das_A          196 VYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G  273 (347)
T ss_dssp             EEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T
T ss_pred             EEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C
Confidence            44567765 5689999988776663  24322333333222110 000       0 001 01111123567777774 4


Q ss_pred             CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287          294 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  359 (513)
Q Consensus       294 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~  359 (513)
                       .+++..-..+.|....+.......+...            ++.+....+..|...|||.++++.+
T Consensus       274 -~~~~~~l~~~~l~~v~~~~~~~~~~~e~------------~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          274 -SVWMAGLRGERLWRIPLKGTAAAADPQA------------FLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             -EEEEEESTTCSEEEEEEETTEESSCCEE------------ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             -ceeeccccCCEEEEEEecCCceecceEE------------eecCCCCCccEEEECCCCcEEEEEc
Confidence             6666666666666556544321111111            1222236799999999998777644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.55  E-value=2.4  Score=37.83  Aligned_cols=129  Identities=10%  Similarity=0.117  Sum_probs=72.5

Q ss_pred             eEEEEe--ccC-CC-EEEEE-cCCeEEEEEcCCC---cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287          235 INSISN--NSD-GE-TFISA-DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  306 (513)
Q Consensus       235 v~~~~~--~~~-~~-~l~s~-~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  306 (513)
                      +..+|+  ++. ++ ++++. .+|.+..|++...   ....+++    +++. ....+..+...+.. ..|+.+-++.-|
T Consensus       130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV----R~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GI  203 (355)
T 3amr_A          130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV----RAFK-MNSQTEGMAADDEY-GRLYIAEEDEAI  203 (355)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE----EEEE-CSSCEEEEEEETTT-TEEEEEETTTEE
T ss_pred             eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE----EEec-CCCCcceEEEcCCC-CeEEEecccceE
Confidence            455666  664 44 34444 6899999988432   1111111    1222 23568888899877 688888888777


Q ss_pred             EEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEe--ecCC-EEEEEe-C-CeEEEEEccCCCCCeeeee
Q 010287          307 RLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--RNGR-HILSRD-Y-MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       307 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~-~l~~~~-~-~~v~iwd~~~~~~~~~~~~  379 (513)
                      ..++.+-... ..+.+..+..          ......+..|++-  ++++ +|++++ . ..+.+||.....+.+..+.
T Consensus       204 w~~da~p~~~~~~~~v~~~~~----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADG----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSS----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEeCCcCCCCCceEEEEecC----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            7777542110 0011111111          0111357778774  5666 666655 3 8999999963355555554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.44  E-value=2.4  Score=37.28  Aligned_cols=124  Identities=7%  Similarity=0.001  Sum_probs=67.5

Q ss_pred             EEEeecCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcE
Q 010287          346 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF  421 (513)
Q Consensus       346 i~~sp~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i  421 (513)
                      ..|++++++|+-.+   ++.-.||-+...+...+.+..+..                   ..++++++.|+-.+. ...|
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-------------------~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-------------------FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-------------------CCSEEETTEEEEECTTTCCE
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-------------------eEeeEECCEEEEEeCCCceE
Confidence            36788999888765   344455555443554444443321                   235678888775554 5678


Q ss_pred             EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC--eEEE--ecCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287          422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE  497 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~  497 (513)
                      ++-++..+... ..+++   +.. ..+.|++++|+-...++  .|..  ..+....   ...     +..+  ..|+|++
T Consensus       170 y~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~---~Lt-----~~~~--~~~~~~g  234 (302)
T 3s25_A          170 YRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV---VLT-----EANI--EHYNVYG  234 (302)
T ss_dssp             EEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE---ECS-----CSCE--EEEEEET
T ss_pred             EEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE---EEe-----CCCc--ceEEECC
Confidence            88887755322 22322   222 23558899887655432  4444  2222211   111     2223  3478888


Q ss_pred             CEEEEE
Q 010287          498 NSIACA  503 (513)
Q Consensus       498 ~~la~~  503 (513)
                      ++|.-+
T Consensus       235 ~~Iy~~  240 (302)
T 3s25_A          235 SLIFYQ  240 (302)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            888754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.10  E-value=3.5  Score=37.94  Aligned_cols=194  Identities=12%  Similarity=0.064  Sum_probs=101.9

Q ss_pred             CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-------CCcEEEEEcCCcccc
Q 010287          245 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLIDMRQSALC  317 (513)
Q Consensus       245 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~  317 (513)
                      +.|+--.+..|+.|+++......++++-.+ .+.  ...|..-..+++. ++++..+-       .|.+.+|..+.+.. 
T Consensus       117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~s-  191 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS-  191 (494)
T ss_dssp             TEEEEECSSEEEEEESSSSCCCEEEEECCG-GGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCE-
T ss_pred             CeEEEEcCCeeEEecccCCCCchhheecch-hcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeecccccc-
Confidence            355555678899999976444544443221 222  4667788888888 66554332       46778888765431 


Q ss_pred             cccceeeccccCCCCccccccccccEEEEEEeec---CCEEEEEe----CCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                          ..+            .+|.+....+.+..+   ..+++-+.    .+.++|.++..+...-..+........ ...
T Consensus       192 ----Q~i------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~-fpp  254 (494)
T 1bpo_A          192 ----QPI------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPP  254 (494)
T ss_dssp             ----EEE------------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC-CCT
T ss_pred             ----chh------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee-CCc
Confidence                222            333333333332211   11222232    278999998642111011100000000 000


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV  464 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  464 (513)
                      ...++.  +| ++..++.-..+..-+.-|.|++||++++..+ ..-....+++...+......-++.....|.|
T Consensus       255 e~~~DF--Pv-amqvs~kygviyviTK~G~i~lyDleTgt~i-~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          255 EAQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             TSTTCC--EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             ccccCc--ee-EEEecccCCEEEEEecCceEEEEecccceee-eeecccCCceEEecccCCCCcEEEEccCceE
Confidence            001111  12 6888988888888999999999999999544 3444555555554444444444444444444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.02  E-value=3.2  Score=37.19  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=64.0

Q ss_pred             CCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEe--CCCcE
Q 010287          233 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI  306 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~--~dg~i  306 (513)
                      ...+.++|.|+|.++++-. .|.|++++...+... .+..+ +............|+++|+   +..++++-+  .++.|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            4478999999999888885 999999986543321 11101 1112233566899999995   214444332  34555


Q ss_pred             EEEEcCCcc----cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          307 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       307 ~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      .-|.+..+.    ........+.....      -..|  .-..|.|.|||.+.++.
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEEE
Confidence            556554421    11111111211100      0112  24569999999887773

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.68  E-value=3.7  Score=38.58  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=37.0

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec---CCEEEE
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS  357 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~  357 (513)
                      .....++|.|++ +++++-...+.|.+++..++...  .+..+...-.      .......+..|+|+|+   +..|..
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~------~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK--TVFQVPEIVN------DADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--EEEECTTCCC------CTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe--EEecCCcccc------ccCCCCceeEEEECCCcCcCCEEEE
Confidence            356799999998 76665444457888876544321  1111111000      0001246789999995   444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.63  E-value=3.4  Score=36.13  Aligned_cols=23  Identities=9%  Similarity=0.091  Sum_probs=16.3

Q ss_pred             CCCeEEEEEeCC-----CcEEEEEcCCcc
Q 010287          292 THCNMLAYSSSK-----GSIRLIDMRQSA  315 (513)
Q Consensus       292 ~~~~~l~~~~~d-----g~i~vwd~~~~~  315 (513)
                      ++ ++++.|+.+     ..+.+||+.+..
T Consensus       159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          159 SG-VIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CC-EEEEECCCCCCcccceEEEEeCCCCc
Confidence            45 778887765     457888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.95  E-value=4.5  Score=35.53  Aligned_cols=135  Identities=7%  Similarity=0.008  Sum_probs=69.4

Q ss_pred             EeccCCCEEEEEc---CC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEcC
Q 010287          239 SNNSDGETFISAD---DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR  312 (513)
Q Consensus       239 ~~~~~~~~l~s~~---d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~~  312 (513)
                      .|+++++.|+-.+   ++  .|..-++.... ...        +..+..    ..++|++ ..|+..+. ...|.+-++.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~--------lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~  175 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKK--------IKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA  175 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEE--------EESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEE--------EeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence            5677777777553   33  45445554222 211        122221    3457777 45554444 5677777765


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      .+..    .+.+++               ... ..++|++.+|+-.+.   ..|..-++.  +.....+....       
T Consensus       176 g~~~----~~l~~~---------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~-------  226 (302)
T 3s25_A          176 SQSE----ALFYDC---------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN-------  226 (302)
T ss_dssp             TTEE----EEEECS---------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC-------
T ss_pred             CCCE----EEEeCC---------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC-------
Confidence            5432    111221               122 235699998886542   345444544  44444442111       


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeC--CCcEEEEecCC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSE  428 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~  428 (513)
                                  ...|+|++++|+-++.  .+.|..-++..
T Consensus       227 ------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          227 ------------IEHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             ------------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             ------------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence                        2358888988876532  35566656653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.02  E-value=16  Score=39.58  Aligned_cols=130  Identities=7%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             CeEEEEeccCCCEEEE-E-c------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeC-
Q 010287          234 HINSISNNSDGETFIS-A-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSS-  302 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s-~-~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~-  302 (513)
                      .|..-..+++.++++. | .      .|.+.+|..+.....         .+++|......+...  +....+|..+.. 
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ---------~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch---------hhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence            3556666777777663 2 1      478889988744322         456666555444442  222133333322 


Q ss_pred             --CCcEEEEEcCCccccc-cc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287          303 --KGSIRLIDMRQSALCD-TH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       303 --dg~i~vwd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~  377 (513)
                        .+.+++-++....... .. .+..+..-.+      .....-..++..|+....+..-+. |.+.+||+.+ +..+..
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~  295 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYM  295 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCc------ccccCcceEEEeccccCEEEEEecCceEEEEeccc-chhhhh
Confidence              2688888875430000 00 0011110000      011234566888887666666665 9999999997 666654


Q ss_pred             ee
Q 010287          378 FQ  379 (513)
Q Consensus       378 ~~  379 (513)
                      -+
T Consensus       296 ~r  297 (1630)
T 1xi4_A          296 NR  297 (1630)
T ss_pred             cc
Confidence            43

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.19  E-value=19  Score=38.96  Aligned_cols=178  Identities=12%  Similarity=0.073  Sum_probs=88.9

Q ss_pred             EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-------CCCcEEEEEcCCccccc
Q 010287          246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSALCD  318 (513)
Q Consensus       246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~  318 (513)
                      .|+--.+..|+.|++.......++++-. ..+.  ...|..-..+++. ++++..+       ..|.+.+|....+..  
T Consensus       118 ~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s--  191 (1630)
T 1xi4_A          118 TVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS--  191 (1630)
T ss_pred             eeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc--
Confidence            4444466789999997544343333211 1222  4567777788887 6655433       357888888765432  


Q ss_pred             ccceeeccccCCCCccccccccccEEEEEEe--ec-CCEEEEEe----CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          319 THSKLFEEQEAPGTRSFFTEIIASISDIKFA--RN-GRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~-~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                         ..            +.||.+....+...  +. ...++.+.    .+.++|-++..+...-..+......+. ...-
T Consensus       192 ---Q~------------iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~-~~~~  255 (1630)
T 1xi4_A          192 ---QP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPE  255 (1630)
T ss_pred             ---hh------------hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc-CCcc
Confidence               12            23333333333222  11 12222221    268888888542000011100000000 0000


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT  449 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  449 (513)
                      ..++.  +| ++..++.-..+..-+.-|.|++||+.++..+ ..-.....+|...+..
T Consensus       256 ~~~Df--pv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i-~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          256 AQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPH  309 (1630)
T ss_pred             cccCc--ce-EEEeccccCEEEEEecCceEEEEecccchhh-hhccccCCceEEeccC
Confidence            01111  12 6778888888888889999999999998544 2223334444433333

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.19  E-value=6.2  Score=37.63  Aligned_cols=113  Identities=10%  Similarity=0.040  Sum_probs=68.6

Q ss_pred             cEEEEEEeecCCEEEEEeC--CeEEEEEccC-----CCCC---eeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          342 SISDIKFARNGRHILSRDY--MTLKLWDINM-----DSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                      ....+..+|||+++++++.  .++.++|++.     ..+.   ...+.+....  .          ..-...+|.++|.-
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--G----------lGPlHt~Fd~~G~a  391 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--G----------LGPLHTTFDGRGNA  391 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--C----------SCEEEEEECSSSEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--C----------CcccEEEECCCCce
Confidence            4567889999999999774  9999999874     1111   0111110000  0          01236899999955


Q ss_pred             EEEEeCCCcEEEEecCCC---------CccceeecCCCCceeEEE-----EcCCCCceeee---cCCCeEEE
Q 010287          412 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLG---SLSGVVRR  466 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~---~~d~~i~~  466 (513)
                      ..+---|..|.-|++...         ..++..+..|-.+-.-.+     ..++|+||++.   |.|+.+.+
T Consensus       392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~v  463 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPV  463 (638)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCC
T ss_pred             EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCC
Confidence            556668999999998753         123344555554432222     26899999886   34555444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.20  E-value=26  Score=37.43  Aligned_cols=77  Identities=8%  Similarity=0.041  Sum_probs=45.6

Q ss_pred             CCeEEEEeccC------CCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC
Q 010287          233 YHINSISNNSD------GETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK  303 (513)
Q Consensus       233 ~~v~~~~~~~~------~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d  303 (513)
                      ..|.|+++.+.      +++++.| . |++++++++.+.+.... .     .+.. ...+.++.+.. .+..++..|-.|
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-~-----~L~~-~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK-E-----MLGG-EIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE-E-----ECCS-SCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE-E-----ECCC-CCCCcEEEEEEeCCCcEEEEEeCC
Confidence            45888888753      4688888 4 99999999985433211 1     1111 12334443331 223678888899


Q ss_pred             CcEEEEEc--CCccc
Q 010287          304 GSIRLIDM--RQSAL  316 (513)
Q Consensus       304 g~i~vwd~--~~~~~  316 (513)
                      |.+..+.+  .++.+
T Consensus       627 G~l~~~~~d~~tg~l  641 (1158)
T 3ei3_A          627 GALFYFGLNIETGLL  641 (1158)
T ss_dssp             SEEEEEEECTTTCCE
T ss_pred             CeEEEEEEcCCCCcc
Confidence            98866554  34444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.95  E-value=13  Score=33.69  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCc-ceeeecccCccccccccCCeEEEEEe---CC---CCeEEE-EEeCCCcEEEEEcCCcccccccceeec
Q 010287          254 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       254 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      .|.+||+.+.. +.++.+.+.+.... ..+.+..+.+.   |.   +..++. +=+..+-|.|+|+.+++.-    +...
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~  198 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH  198 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence            46677777651 33333333221222 24568888888   22   113433 3334788999999987642    2221


Q ss_pred             cccCCC--Ccccccc----ccccEEEEEEeec----CCEEEEEeCCeEEEEEccC----CCCCeeeeecccccccccccc
Q 010287          326 EQEAPG--TRSFFTE----IIASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       326 ~~~~~~--~~~~~~~----~~~~v~~i~~sp~----~~~l~~~~~~~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ..-.+.  ......+    -...+..|+++|+    ++.|.-..-..-++|.+.+    .......+          ..+
T Consensus       199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v----------~~~  268 (381)
T 3q6k_A          199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP----------ELL  268 (381)
T ss_dssp             GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC----------EEE
T ss_pred             CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce----------EEe
Confidence            111111  0000111    1247899999998    7777765543334555432    01110111          000


Q ss_pred             cccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecCC
Q 010287          392 YENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      .......+-..+++. .+|.++++--..+.|..|+..+
T Consensus       269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            000000111245665 5676677777888999999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.89  E-value=11  Score=32.75  Aligned_cols=22  Identities=5%  Similarity=0.209  Sum_probs=16.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCC
Q 010287          408 DGGRVATGSYS-----NLFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~d-----g~i~vwd~~~~  429 (513)
                      ++++++.|+.+     ..+.+||+.+.
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            66777777754     46889999866

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=87.56  E-value=14  Score=32.21  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=15.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCC
Q 010287          408 DGGRVATGSYSN-----LFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~dg-----~i~vwd~~~~  429 (513)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            667777777553     4788888765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.99  E-value=15  Score=32.04  Aligned_cols=22  Identities=0%  Similarity=-0.020  Sum_probs=15.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCC
Q 010287          408 DGGRVATGSYS-----NLFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~d-----g~i~vwd~~~~  429 (513)
                      ++++++.|+.+     ..+.+||+.+.
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            66777788754     46788888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.92  E-value=11  Score=35.90  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=54.8

Q ss_pred             CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceee--ecccCc---cccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          233 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .....+.++|||++++.+  -+.++.++|++.-...+.  +++.+.   ...+ -.......+|.++| +...+...|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence            345678899999999987  499999999984322110  000000   0111 24557889999998 88888889999


Q ss_pred             EEEEEcCC
Q 010287          306 IRLIDMRQ  313 (513)
Q Consensus       306 i~vwd~~~  313 (513)
                      |..|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999865

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=85.92  E-value=32  Score=34.80  Aligned_cols=251  Identities=7%  Similarity=-0.025  Sum_probs=123.4

Q ss_pred             CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ..|.++....++.+-+....| +.++... .  ..+.+......-......|.++.-..++ .+.+ |+.+| +..++..
T Consensus       279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lWi-Gt~~G-l~~~~~~  351 (758)
T 3ott_A          279 NIIWNIFADQEHNIWLGTDYG-ISLSRYN-S--ALQFIPISQITGTGDGNQFYSLFRDSKG-FYWF-GGANG-LIRFTDP  351 (758)
T ss_dssp             SCEEEEEECTTCCEEEEESSS-EEEECCC-C---CEEEEHHHHSCSCCCCBEEEEEECTTC-CEEE-EETTE-EEEESCT
T ss_pred             CeEEEEEEcCCCCEEEEeCCc-ccccccC-C--ceeEEecccCCCCCCCceEEEEEEcCCC-CEEE-eeCCc-ceeeccc
Confidence            347888888888766655556 5444322 1  1111100000001123468888888887 5444 34555 5556655


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY  392 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++...  ....+........   +  ....|.++.-.++|.+.+.. ++-|..||..+ + ....+...... ..    .
T Consensus       352 ~~~~~--~~~~~~~~~~~~~---l--~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~-~-~~~~~~~~~~~-~~----~  416 (758)
T 3ott_A          352 AGERH--DAIWYRMGDKTYP---L--SHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT-R-QFIHYNIVDNT-GT----Y  416 (758)
T ss_dssp             TSSCC--CCEEECTTCSSSC---C--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTT-T-EEEEEEEECCC-------C
T ss_pred             ccccc--eeEEeccCCcCCC---C--CCCceEEEEECCCCCEEEEe-CCcHhhcCcCC-C-cEEEeecCCCc-CC----C
Confidence            43211  0111211000000   0  11458888887788766544 56788899774 3 23333211110 00    0


Q ss_pred             ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC-----Cccc--eeec----CCCCceeEEEEcCCCCcee-eecC
Q 010287          393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----SAES--TTLE----ASKNPMRRQVQTPSRPSRP-LGSL  460 (513)
Q Consensus       393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----~~~~--~~~~----~~~~~v~~~~~~~~~~~l~-~~~~  460 (513)
                      ..   ..|.++...++++ |..|+..+-|.++|..+.     ....  ..+.    .....|.++...+++.+.+ .+..
T Consensus       417 ~~---~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~  492 (758)
T 3ott_A          417 NT---NWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN  492 (758)
T ss_dssp             BS---SSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred             CC---ceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence            00   1134666666665 445666556888886531     0010  0111    1223588888888888665 3556


Q ss_pred             CCeEEEe-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          461 SGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       461 d~~i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      +|..++- .......  ...........+.++....+|.+.+. +.+++..|+
T Consensus       493 ~Gl~~~d~~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~lWig-t~~Gl~~~~  542 (758)
T 3ott_A          493 KGIDKINPRTREVTK--LFADELTGEKSPNYLLCDEDGLLWVG-FHGGVMRIN  542 (758)
T ss_dssp             SSEEEEETTTTEEEE--ECTTTSCGGGCEEEEEECTTSCEEEE-ETTEEEEEC
T ss_pred             CCcEEEeCCCCceEE--ecCCCcCCCcccceEEECCCCCEEEE-ecCceEEEe
Confidence            7766661 1111110  00001111346788888888877654 457888774

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=85.38  E-value=18  Score=31.49  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=16.5

Q ss_pred             CCCeEEEEEeCC------CcEEEEEcCCcc
Q 010287          292 THCNMLAYSSSK------GSIRLIDMRQSA  315 (513)
Q Consensus       292 ~~~~~l~~~~~d------g~i~vwd~~~~~  315 (513)
                      ++ .+++.|+.+      ..+.+||+.+..
T Consensus       101 ~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A          101 EG-KIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TT-EEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CC-EEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            44 788888765      468888987754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.99  E-value=35  Score=34.48  Aligned_cols=242  Identities=11%  Similarity=0.065  Sum_probs=120.3

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  313 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  313 (513)
                      .|.++....++.+.+...+ -|..++..+...  ..+.. +.........|.++...+++ ..|-.|+. +-+..+|..+
T Consensus       147 ~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~-~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKF--EGIPL-PVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             CEEEEEECTTCCEEEEETT-EEEEEETTTTEE--EEECC-CCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTT
T ss_pred             eEEEEEEcCCCCEEEEeCC-CHhhCccCCCce--EEecC-CCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCC
Confidence            3777877777877665444 477788764332  11100 00000112348888888765 43333443 4577788766


Q ss_pred             cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287          314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE  393 (513)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      +...     .+..         +  ....|.++...++|.+.+.. ++-+.+++... . .+..+........   .+. 
T Consensus       221 ~~~~-----~~~~---------l--~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~---~l~-  277 (758)
T 3ott_A          221 GQIK-----QTEA---------F--HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQ---SLT-  277 (758)
T ss_dssp             TEEE-----EEEE---------E--EEEEEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTT---SCS-
T ss_pred             CeEE-----eccC---------C--CCCeEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcC---cCC-
Confidence            5421     1110         0  01358888887777766654 55577888763 2 2333321111000   000 


Q ss_pred             cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCeEEEec
Q 010287          394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK  468 (513)
Q Consensus       394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~  468 (513)
                      ..   .|.++....+|.+.+ |+..| +.++..... ......     ......|.++....+|.+.+.. .+|..++..
T Consensus       278 ~~---~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~  350 (758)
T 3ott_A          278 NN---IIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTD  350 (758)
T ss_dssp             CS---CEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESC
T ss_pred             cC---eEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecc
Confidence            01   245777777776544 55556 555433211 111111     1123467788887777755443 467666611


Q ss_pred             CC-CCCccc-cC--Cc-cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          469 GA-DNSALD-AN--GN-AFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       469 ~~-~~~~~~-~~--~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .. ...... ..  .. ..-....|.++.-..++++.+. +.+++..|+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~GL~~~~  398 (758)
T 3ott_A          351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TDGSINRYD  398 (758)
T ss_dssp             TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ETTEEEEEE
T ss_pred             cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eCCcHhhcC
Confidence            11 000000 00  00 0001346888888888876553 467888775

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.43  E-value=22  Score=31.68  Aligned_cols=25  Identities=8%  Similarity=-0.096  Sum_probs=18.3

Q ss_pred             CEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          245 ETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       245 ~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                      ..+++| .++.+.-.|+++++...+.
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             CEEEEEecCCEEEEEECCCCcEEEEE
Confidence            345555 7899999999888876653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.17  E-value=28  Score=32.68  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=61.7

Q ss_pred             CCeEEEEeccCCC--EEEEEcCCeEEEEEcCCCcceeeecccCccccc----cccCCeEEEEEeCC----CCeEEEEEeC
Q 010287          233 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS  302 (513)
Q Consensus       233 ~~v~~~~~~~~~~--~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~----~~~~l~~~~~  302 (513)
                      ...+.|+|.|++.  +|++-..|.|++++.........+.++......    ........|+++|+    + .++++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence            3467999999985  666667899999975422111111111111111    12456789999996    4 44444332


Q ss_pred             C------------CcEEEEEcCCcc--cc--cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287          303 K------------GSIRLIDMRQSA--LC--DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY  360 (513)
Q Consensus       303 d------------g~i~vwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~  360 (513)
                      +            ..|.-|.+..+.  ..  ......++....      ...|  .-..|.|.|||.+.++..+
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------~~~H--~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------HRKH--LGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------SSSS--CEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------CCcc--cCCcEeECCCCcEEEEeCC
Confidence            1            134445554321  10  011112221110      1123  3578999999987777444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.26  E-value=24  Score=30.56  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=16.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCC
Q 010287          408 DGGRVATGSYS-----NLFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~d-----g~i~vwd~~~~  429 (513)
                      ++++++.|+.+     ..+.+||+.+.
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            66777777754     36889998865

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=82.09  E-value=25  Score=30.70  Aligned_cols=22  Identities=14%  Similarity=0.359  Sum_probs=15.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCC
Q 010287          408 DGGRVATGSYSN-----LFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~dg-----~i~vwd~~~~  429 (513)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCC
Confidence            667777777544     4788898865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=81.55  E-value=26  Score=30.49  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=16.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCC
Q 010287          408 DGGRVATGSYS-----NLFRVFGCSEG  429 (513)
Q Consensus       408 ~~~~l~~~~~d-----g~i~vwd~~~~  429 (513)
                      ++++++.|+.+     ..+.+||+.+.
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            66777777754     56889998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-05

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 47/351 (13%)

Query: 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA 161
           + +  KSL+    +  +++        YL +  +KT ++++V +  +      +    K 
Sbjct: 52  DVELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV--------- 212
             N     S  S +    +     G+     A +         +   + ++         
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 213 -----------------TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 254
                            T +  +L  G   +     D       +  DG+   +   D  
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314
           + +W+ E +      +D +  +     + + S  F       +   S   S++L +++ +
Sbjct: 229 VRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNA 286

Query: 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSG 373
                                +      +  +   +N  +ILS      +  WD      
Sbjct: 287 NNKSDSKTPNSGT----CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGN 341

Query: 374 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424
           P+   Q H +            S+       L  +    ATGS     R++
Sbjct: 342 PLLMLQGHRN---------SVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 36/284 (12%), Positives = 79/284 (27%), Gaps = 28/284 (9%)

Query: 38  ISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92
           I ++ F   G  LATG      R   +   +         Q         S  +      
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 93  KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152
               +  +            E           +       + D+ +++W  +   + +  
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 153 DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212
           D                 H  ++        G   ++    S D S     + +L+    
Sbjct: 244 DSENES---------GTGHKDSVYSVVFTRDG---QSVVSGSLDRSVK---LWNLQNANN 288

Query: 213 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271
            S      +G   +    H   + S++   + E  +S   D  +  W+ +    S N + 
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----SGNPLL 344

Query: 272 VKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313
           +   +   +  V     +   P + N+ A  S     R+   ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 36/292 (12%), Positives = 85/292 (29%), Gaps = 37/292 (12%)

Query: 231 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 290
           H   +  +  ++DGE   +  +    ++ +   +    + D   AN +      +S+   
Sbjct: 61  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350
             +   + +S             +   D   ++++ +                S   F  
Sbjct: 121 DLYIRSVCFSPDG------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 351 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410
             + +      T+++WD+      +                               GDG 
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV----------------TTVAVSPGDGK 218

Query: 411 RVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 464
            +A GS     RV+    G       +E+ +    K+ +   V T    S   GSL   V
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 465 RRVKGADNSALDANGNAFDFSMKL---------LHLAWHPSENSIACAASNS 507
           +     + +    +      + ++         L +A   ++  I   + + 
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 7e-08
 Identities = 44/324 (13%), Positives = 95/324 (29%), Gaps = 35/324 (10%)

Query: 112 EEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI--- 167
              + ++ +    +    ++S + D TIK+W  +    ++    +    +          
Sbjct: 17  RSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 168 -FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRI 226
                     K +   G    R      ++ S      +   +   +  +T  +   +  
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 227 YA----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 281
           Y       H   +  +  N DG    S  +D  + +W +     +         +   + 
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVE 189

Query: 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341
            +  + E   +  +    S +K S +      S   D   K+++        +       
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DN 248

Query: 342 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400
            +  + F   G+ ILS  D  TL++WD       + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHE------------HFVTS- 294

Query: 401 FECCLSGDGGRVATGSYSNLFRVF 424
                      V TGS     +V+
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 41/204 (20%)

Query: 223 CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 281
            +      H   + S+S   D   F+S   D    LW++                     
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHE 226

Query: 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341
             I +  F P + N  A  S   + RL D+R      T+                  II 
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY--------------SHDNIIC 271

Query: 342 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400
            I+ + F+++GR +L+  D     +WD    +        H+            + +   
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC- 317

Query: 401 FECCLSGDGGRVATGSYSNLFRVF 424
               ++ DG  VATGS+ +  +++
Sbjct: 318 --LGVTDDGMAVATGSWDSFLKIW 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.91
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.8
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.32
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.91
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.72
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.0
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.18
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.18
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.39
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.89
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.69
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.74
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.23
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.73
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.53

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-39  Score=296.27  Aligned_cols=285  Identities=11%  Similarity=0.164  Sum_probs=229.4

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ..++|.+.|+|++|+|+|++||+|+ ||.|+|||+......                  .........+|+         
T Consensus        46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~~h~---------   97 (337)
T d1gxra_          46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCLNRD---------   97 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECSCTT---------
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeecCCC---------
Confidence            4568999999999999999999998 789999998765431                  111223345676         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         +.|.+++|+|  ++.+|++++.||+|++||+.........                                     
T Consensus        98 ---~~I~~v~~s~--dg~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------------  135 (337)
T d1gxra_          98 ---NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKA-------------------------------------  135 (337)
T ss_dssp             ---SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEE-------------------------------------
T ss_pred             ---CcEEEEEEcC--CCCEEEEeeccccccccccccccccccc-------------------------------------
Confidence               8899999955  7889999999999999998764322111                                     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                           .+..|...+.+++|+|++.+++++ .++.|++|++.+++... 
T Consensus       136 -------------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~-  177 (337)
T d1gxra_         136 -------------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-  177 (337)
T ss_dssp             -------------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             -------------------------------------cccccccccccccccccccccccccccccccccccccccccc-
Confidence                                                 134677789999999999999998 79999999998765432 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             ....|...|.+++|++++ ..+++++.|+.+++||+++++.    +..+             .|...|.+++|
T Consensus       178 -------~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~----~~~~-------------~~~~~i~~l~~  232 (337)
T d1gxra_         178 -------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQ----LQQH-------------DFTSQIFSLGY  232 (337)
T ss_dssp             -------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEE-------------ECSSCEEEEEE
T ss_pred             -------cccccccccccccccccc-ccccccccccccccccccccee----eccc-------------ccccceEEEEE
Confidence                   346788999999999998 8999999999999999988764    2222             23468999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++++|++++. +.+++||++. .... ....|...               |++++|+|++++|++++.||.|++||+.
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~-~~~~~~~~---------------i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNK-PDKY-QLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTS-SCEE-EECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccceeccccccccccccc-cccc-cccccccc---------------cceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            999999999875 9999999985 4433 33444443               5589999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++... .. ..|..+|.+++|+|++++|++|+.||.|++
T Consensus       296 ~~~~~-~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v  332 (337)
T d1gxra_         296 YGASI-FQ-SKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             TCCEE-EE-EECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCEE-EE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            87443 33 347789999999999999999999999999

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-37  Score=281.07  Aligned_cols=282  Identities=17%  Similarity=0.256  Sum_probs=236.7

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.++|++|+|+|++++||||+.||+|+|||+.+++..                       ..+.+|.         
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~-----------------------~~~~~h~---------   59 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-----------------------RTLKGHT---------   59 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-----------------------EEECCCS---------
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE-----------------------EEEeCCC---------
Confidence            46689999999999999999999999999999998776642                       5577888         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.+++++..++.+.+|+....+....                                      
T Consensus        60 ---~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------   96 (317)
T d1vyhc1          60 ---DSVQDISFDH--SGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------   96 (317)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCCCEEETTSSCEEEC--------------------------------------
T ss_pred             ---CcEEEEeeec--ccccccccccccccccccccccccccc--------------------------------------
Confidence               8899999954  778999999999999999876543221                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            ..+|...+.++.|+++++.++++ .|+.+++||++++.... 
T Consensus        97 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-  137 (317)
T d1vyhc1          97 --------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-  137 (317)
T ss_dssp             --------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             --------------------------------------cccccccceeeeccCCCceEEeeccCcceeEeecccceeee-
Confidence                                                  24566778999999999999998 79999999998766443 


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                             .+..|...+.+++|+|++ .+|++++.|+.|++|+++++..    ...+.            +|...+.++.|
T Consensus       138 -------~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~----~~~~~------------~~~~~i~~~~~  193 (317)
T d1vyhc1         138 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAELR------------EHRHVVECISW  193 (317)
T ss_dssp             -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEEEC------------CCSSCEEEEEE
T ss_pred             -------EEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeecccee----eEEEe------------cCCCCceEEEE
Confidence                   456788999999999998 8999999999999999988765    22222            23355666666


Q ss_pred             eec--------------------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287          349 ARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       349 sp~--------------------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                      +|+                    +.++++++. +.|++||+.+ ++++..+.+|...               |.+++|+|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~---------------v~~~~~~~  257 (317)
T d1vyhc1         194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS  257 (317)
T ss_dssp             CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred             eeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCC---------------EEEEEECC
Confidence            553                    456777764 9999999996 8888888887765               45899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++++|++|+.||.|++||+.++ +.+.++.+|..+|.+++|+|++++|++|+.||.|++
T Consensus       258 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         258 GGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             SSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCCEEEEEECCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999999999999999999987 556889999999999999999999999999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-37  Score=289.23  Aligned_cols=339  Identities=12%  Similarity=0.151  Sum_probs=232.5

Q ss_pred             cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      .++|+|++|+|+|++||+|+.||.|+||+..+++.                     .....+.+|.            +.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~---------------------~~~~~l~gH~------------~~   53 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------GQ   53 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------SC
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE---------------------EEEEEecCCC------------CC
Confidence            47899999999999999999999999999876542                     2445678998            89


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |++++|+|  ++++|++++.|++|++||+.++.......                                         
T Consensus        54 V~~l~fsp--~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-----------------------------------------   90 (371)
T d1k8kc_          54 VTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV-----------------------------------------   90 (371)
T ss_dssp             EEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE-----------------------------------------
T ss_pred             EEEEEECC--CCCEEEEEECCCeEEEEeecccccccccc-----------------------------------------
Confidence            99999976  77899999999999999998775443221                                         


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                                       +.+|...|.+++|+|+++.|+++ .|++|++|+++.........   
T Consensus        91 ---------------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~---  134 (371)
T d1k8kc_          91 ---------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---  134 (371)
T ss_dssp             ---------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE---
T ss_pred             ---------------------------------cccccccccccccccccccceeecccCcceeeeeeccccccccc---
Confidence                                             24667789999999999999998 79999999988655432221   


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC--CCccccccccccEEEEEEeec
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~sp~  351 (513)
                       .....|...|.+++|+|++ .+|++++.|+.|++||....................  .......+|...|.+++|+|+
T Consensus       135 -~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         135 -HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             -EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             -ccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence             1346688999999999998 899999999999999987654322111110000000  011123567889999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +++|++++. +.|++||+.. +..+..+..|...               |++++|+|++++|++|. |+.+++|......
T Consensus       213 g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~---------------v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         213 GSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             SSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             cccccccccCCcceEEeeec-ccceeeeeccccc---------------ceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence            999999875 9999999996 7888888877654               55899999998887655 6777777665442


Q ss_pred             ccceeecCCCCceeEE---EEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC----EEEEE
Q 010287          431 AESTTLEASKNPMRRQ---VQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN----SIACA  503 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~----~la~~  503 (513)
                      .. ..+..........   ..+.... +  ...|.....  .....  ........|...|++++++|.+.    .++++
T Consensus       276 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~--~~~~~--~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~  347 (371)
T d1k8kc_         276 GK-LSFGGRLDVPKQSSQRGLTARER-F--QNLDKKASS--EGSAA--AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT  347 (371)
T ss_dssp             TE-EEECCCCCCC--------CHHHH-H--HHCCCCC-------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE
T ss_pred             ce-EEEeeeecCccccccccccceee-E--ecccceeEE--ecccc--ccceecccccCCEEEEEEeCCCCcceEEEEEE
Confidence            22 1121111100000   0000000 0  000111111  00000  00111124889999999988753    47777


Q ss_pred             c-CCcEEEEe
Q 010287          504 A-SNSLYMYY  512 (513)
Q Consensus       504 ~-~~~~~i~~  512 (513)
                      + |+.++||+
T Consensus       348 g~Dg~v~iW~  357 (371)
T d1k8kc_         348 GMDGGMSIWD  357 (371)
T ss_dssp             ETTSEEEEEE
T ss_pred             cCCCeEEEEe
Confidence            6 77899996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-38  Score=294.10  Aligned_cols=318  Identities=16%  Similarity=0.286  Sum_probs=222.3

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|++.|+|++|||||++||+|+ |+.|+||++.+++........    . .....+.........+|.         
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~---------  121 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD----S-AANKDPENLNTSSSPSSD---------  121 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCC---------
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccc----c-cccccccccccccccCCC---------
Confidence            3457999999999999999999997 889999998776542110000    0 000001111112223344         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|++++|+|  ++.+|++++.||.|++|+...++....                                      
T Consensus       122 ---~~V~~l~~s~--~~~~l~s~~~dg~v~i~~~~~~~~~~~--------------------------------------  158 (388)
T d1erja_         122 ---LYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMI--------------------------------------  158 (388)
T ss_dssp             ---CBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred             ---CCEEEEEECC--CCCcceecccccccccccccccccccc--------------------------------------
Confidence               7899999955  788999999999999999988764432                                      


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                            ..+|...|.++++++++..++++ .++.+++||.++......
T Consensus       159 --------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         159 --------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             --------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             --------------------------------------cccccccccccccccccccccccccceeeeeeeccccccccc
Confidence                                                  35677889999999999999998 799999999986554322


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                               ..+.....++.+.+..+.+|++++.|+.|++||.+++...    ..+....     ....+|.+.|.+++|
T Consensus       201 ---------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~----~~~~~~~-----~~~~~h~~~v~~l~~  262 (388)
T d1erja_         201 ---------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV----ERLDSEN-----ESGTGHKDSVYSVVF  262 (388)
T ss_dssp             ---------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCEEEEEE
T ss_pred             ---------cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccc----eeecccc-----ccccCCCCCEEEEEE
Confidence                     2234455666676644489999999999999999887652    2222211     124567789999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +|++++|++++. +.|++||++. .....................+..   .|++++|+|++++|++|+.||.|++||+.
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKD---FVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSS---CEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCcEEEEeccC-Cccccccccccccceeeecccccc---eEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999875 9999999985 333222211111100001111111   25689999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEE------cCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQ------TPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~~  466 (513)
                      ++ +...++++|..+|.++++      +|++++|++|+.||.|++
T Consensus       339 ~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i  382 (388)
T d1erja_         339 SG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  382 (388)
T ss_dssp             TC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             CC-cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence            88 455789999999998875      678999999999999999

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-37  Score=280.76  Aligned_cols=284  Identities=14%  Similarity=0.166  Sum_probs=224.2

Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                      +.|...|.+++|+|  ++.+|++|+ ||.|+|||+.++.......                                   
T Consensus        48 ~~H~~~V~~v~fs~--~g~~latg~-dg~V~iWd~~~~~~~~~~~-----------------------------------   89 (337)
T d1gxra_          48 LNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGNKSPVS-----------------------------------   89 (337)
T ss_dssp             ECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTCCSCSE-----------------------------------
T ss_pred             CCCCCcEEEEEECC--CCCEEEEEE-CCEEEEEEccCCcccceeE-----------------------------------
Confidence            33448999999954  888999987 8999999998754221100                                   


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                          .....+|...|.+++|+|++++|+++ .|+.|++||+.......
T Consensus        90 ------------------------------------~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  133 (337)
T d1gxra_          90 ------------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             ------------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             ------------------------------------EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccc
Confidence                                                01125788889999999999999998 79999999987544332


Q ss_pred             eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287          268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  347 (513)
Q Consensus       268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  347 (513)
                      .      ..+..|...+.++.|+|++ .++++++.|+.|++||+++++..    ..            ..+|...+.+++
T Consensus       134 ~------~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~----~~------------~~~~~~~v~~l~  190 (337)
T d1gxra_         134 K------AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQ------------FQGHTDGASCID  190 (337)
T ss_dssp             E------EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEE
T ss_pred             c------ccccccccccccccccccc-ccccccccccccccccccccccc----cc------------cccccccccccc
Confidence            2      1456788999999999998 89999999999999999887642    22            234557899999


Q ss_pred             EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                      |++++..+++++. +.+++||+++ ++.+..+.. ...               |++++|+|++++|++++.|+.+++||+
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~-~~~---------------i~~l~~~~~~~~l~~~~~d~~i~i~d~  253 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHDF-TSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC-SSC---------------EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccccccc-ceeeccccc-ccc---------------eEEEEEcccccccceeccccccccccc
Confidence            9999999999875 9999999986 666555432 222               458999999999999999999999999


Q ss_pred             CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-C
Q 010287          427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-S  505 (513)
Q Consensus       427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~  505 (513)
                      .++.  ......|..++..++|+|++++|++++.|+.|++   |+.... .......|...|++++|+|++++||+++ +
T Consensus       254 ~~~~--~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~i---wd~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         254 NKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA---WRTPYG-ASIFQSKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             TSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE---EETTTC-CEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             cccc--cccccccccccceEEECCCCCEEEEEeCCCeEEE---EECCCC-CEEEEccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            8763  3466788999999999999999999999999999   332211 1113346889999999999999999887 5


Q ss_pred             CcEEEEe
Q 010287          506 NSLYMYY  512 (513)
Q Consensus       506 ~~~~i~~  512 (513)
                      +.++||.
T Consensus       328 ~~I~vWd  334 (337)
T d1gxra_         328 KKATVYE  334 (337)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            6799996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-36  Score=275.15  Aligned_cols=288  Identities=11%  Similarity=0.144  Sum_probs=223.4

Q ss_pred             cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  112 (513)
                      .+.+.+.+++++|+|+.||.+. ++.|.+|++.+...                       ...+.+|.            
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----------------------~~~~~~H~------------   58 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------   58 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----------------------eEEEcCCC------------
Confidence            3456677899999999999985 56799999876553                       24567888            


Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|++++|+|  ++++|++|+.||+|++||+.++.....                                         
T Consensus        59 ~~v~~~~~sp--~g~~latg~~dg~i~iwd~~~~~~~~~-----------------------------------------   95 (311)
T d1nr0a1          59 HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQTTHILK-----------------------------------------   95 (311)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSEEEEEESSSTTCCEE-----------------------------------------
T ss_pred             CCEEEEEEeC--CCCeEeccccCceEeeeeeeccccccc-----------------------------------------
Confidence            8899999965  788999999999999999987643211                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeee
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNI  269 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~  269 (513)
                                                       ..+..|...|.+++|+|++++|+++ .  +..+++|++++++...  
T Consensus        96 ---------------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~--  140 (311)
T d1nr0a1          96 ---------------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG--  140 (311)
T ss_dssp             ---------------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB--
T ss_pred             ---------------------------------cccccccCccccccccccccccccccccccccccccccccccccc--
Confidence                                             1135778889999999999999987 3  5679999998765432  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            .+.+|...|++++|+|+++..|++|+.|+.|++||+++++.    ...            +.+|...|.++.|+
T Consensus       141 ------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~----~~~------------~~~~~~~i~~v~~~  198 (311)
T d1nr0a1         141 ------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KST------------FGEHTKFVHSVRYN  198 (311)
T ss_dssp             ------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEE------------ECCCSSCEEEEEEC
T ss_pred             ------cccccccccccccccccceeeeccccccccccccccccccc----ccc------------cccccccccccccC
Confidence                  56789999999999999866799999999999999988764    222            34456789999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |+++++++++. +.|++||+.. +.....+......     ...+..   .|++++|+|++++|++|+.||.|+|||+++
T Consensus       199 p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~-----~~~h~~---~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         199 PDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLK-----NVAHSG---SVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSS-----SCSSSS---CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccc-ccccccccccccc-----cccccc---cccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999875 9999999986 5555554322111     001111   256999999999999999999999999998


Q ss_pred             CCccceeecCCCC-ceeEEEEcCCCCceeeecCCCeEEE
Q 010287          429 GSAESTTLEASKN-PMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       429 ~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + +...++..+.. ....+.+.+++..|++++.||.|++
T Consensus       270 ~-~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~  307 (311)
T d1nr0a1         270 L-KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  307 (311)
T ss_dssp             T-EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             C-cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEE
Confidence            7 44466665543 3334455566778999999999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-36  Score=271.55  Aligned_cols=300  Identities=15%  Similarity=0.202  Sum_probs=232.1

Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ...|.||+            +.|++|+|+|  ++.+|++|+.||+|+|||+.+++....                     
T Consensus        10 ~~~L~GH~------------~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~---------------------   54 (317)
T d1vyhc1          10 KYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT---------------------   54 (317)
T ss_dssp             SCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE---------------------
T ss_pred             cEEEcCCC------------CCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEE---------------------
Confidence            35688999            8999999966  677999999999999999988764332                     


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  251 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  251 (513)
                                                                             +.+|...|.+++|+|++.+++++ .
T Consensus        55 -------------------------------------------------------~~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          55 -------------------------------------------------------LKGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             -------------------------------------------------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -------------------------------------------------------EeCCCCcEEEEeeeccccccccccc
Confidence                                                                   35778889999999999999998 7


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      ++.+.+|+........        .+..|...+.++.++|++ ..+++++.|+.+++||++++..    ...+       
T Consensus        80 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~-------  139 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC----VKTF-------  139 (317)
T ss_dssp             TSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE----EEEE-------
T ss_pred             cccccccccccccccc--------ccccccccceeeeccCCC-ceEEeeccCcceeEeeccccee----eeEE-------
Confidence            9999999988655432        456788999999999998 8999999999999999988765    3333       


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccC-----CccceeeEEE
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND-----SIFDKFECCL  405 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~  405 (513)
                           .+|...+.+++|+|++.+|++++. +.|++|++.. ......+..+......+.......     .........+
T Consensus       140 -----~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  213 (317)
T d1vyhc1         140 -----TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  213 (317)
T ss_dssp             -----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             -----ccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence                 344578999999999999999875 9999999996 777777766655422111000000     0001112334


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS  485 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  485 (513)
                      ...+.++++++.|+.|++|++.++ .....+.+|..++..++++|++++|++|+.||.|++   |+....+.......|.
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV---WDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE---ECCTTSCCCEEEECCS
T ss_pred             ccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEE---EECCCCcEEEEEcCCC
Confidence            445678999999999999999987 455788899999999999999999999999999999   4333223333445689


Q ss_pred             CCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          486 MKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ..|++++|+|++++||+++ |+.++||.
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999888 55688884

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-35  Score=269.02  Aligned_cols=254  Identities=15%  Similarity=0.198  Sum_probs=202.3

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      .+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+....                     ....+.+|.         
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~---------  102 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS---------  102 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS---------
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---------------------ccccccccc---------
Confidence            45689999999999999999999999999999998766532                     334567787         


Q ss_pred             cccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                         ..|.+++|+|  ++.++++++.  ++.+++|++++++....                                    
T Consensus       103 ---~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------  141 (311)
T d1nr0a1         103 ---GPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGN------------------------------------  141 (311)
T ss_dssp             ---SCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBC------------------------------------
T ss_pred             ---Cccccccccc--ccccccccccccccccccccccccccccc------------------------------------
Confidence               8899999955  7778888875  56699999987653221                                    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCCCcc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQ  265 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~~~~  265 (513)
                                                              +.+|...|.+++|+|++++ |++| .|+.|++||+++.+.
T Consensus       142 ----------------------------------------l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~  181 (311)
T d1nr0a1         142 ----------------------------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF  181 (311)
T ss_dssp             ----------------------------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred             ----------------------------------------ccccccccccccccccceeeeccccccccccccccccccc
Confidence                                                    2467788999999999886 6667 799999999986654


Q ss_pred             eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      ..        .+..|...|+++.|+|++ +++++++.|+.|++||++++..    ...++...     ....+|.+.|.+
T Consensus       182 ~~--------~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~----~~~~~~~~-----~~~~~h~~~V~~  243 (311)
T d1nr0a1         182 KS--------TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTK----TGVFEDDS-----LKNVAHSGSVFG  243 (311)
T ss_dssp             EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEECBCTT-----SSSCSSSSCEEE
T ss_pred             cc--------ccccccccccccccCccc-cccccccccccccccccccccc----cccccccc-----cccccccccccc
Confidence            33        456789999999999998 8999999999999999988764    23333221     124568899999


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF  424 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  424 (513)
                      ++|+|++++|++|+. +.|+|||+++ +++++++..+.....              ..+.+.+++++|++++.||.|++|
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFV  308 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEE
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEE
Confidence            999999999999875 9999999996 788888876654321              134555567789999999999999


Q ss_pred             ecC
Q 010287          425 GCS  427 (513)
Q Consensus       425 d~~  427 (513)
                      |++
T Consensus       309 d~d  311 (311)
T d1nr0a1         309 NPE  311 (311)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-35  Score=269.94  Aligned_cols=288  Identities=14%  Similarity=0.198  Sum_probs=225.6

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.++|++++|+|++++||+|+.||+|+|||+.+++.                       ...+.+|.         
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-----------------------~~~~~~~~---------   97 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS---------   97 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSC---------
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-----------------------EEEEeccc---------
Confidence            4568999999999999999999999999999999876653                       34567787         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  ++.++++++.|+.+++|+...........                                    
T Consensus        98 ---~~v~~v~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~------------------------------------  136 (340)
T d1tbga_          98 ---SWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVS------------------------------------  136 (340)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTCCEEEEESSSSCSCCCEE------------------------------------
T ss_pred             ---ccEEeeEeec--cceeeeeecccceeecccccccccccccc------------------------------------
Confidence               8899999955  77899999999999999987653211100                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                                          ..+.+|...........+........+.....+.........  
T Consensus       137 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  178 (340)
T d1tbga_         137 ------------------------------------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT--  178 (340)
T ss_dssp             ------------------------------------EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE--
T ss_pred             ------------------------------------eecccccccccccccccccccccccccccccccccccccccc--
Confidence                                                012345555555555544433333478889888887544332  


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                            ....+...+....+.+.. .++++++.|+.|++||++++..    ...            +.+|...|.+++|+
T Consensus       179 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~----~~~------------~~~h~~~i~~v~~~  235 (340)
T d1tbga_         179 ------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQT------------FTGHESDINAICFF  235 (340)
T ss_dssp             ------EEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEE------------ECCCSSCEEEEEEC
T ss_pred             ------cccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcE----EEE------------EeCCCCCeEEEEEC
Confidence                  234567778999999988 8999999999999999988765    333            34455789999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE  428 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  428 (513)
                      |++++|++|+. +.|++||++. ...+..+......             ..+.+++|+|++++|++|+.||.|++||+.+
T Consensus       236 p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         236 PNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             CCCCEEEEEeCCCeEEEEeecc-ccccccccccccc-------------CceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence            99999999875 9999999986 5555444322221             1256899999999999999999999999998


Q ss_pred             CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      + .....+.+|..+|.+++|+|++++|++|+.||.|++
T Consensus       302 ~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         302 A-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             C-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             C-cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence            7 555889999999999999999999999999999998

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-35  Score=267.41  Aligned_cols=282  Identities=13%  Similarity=0.138  Sum_probs=213.0

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.++|++++|+|+|++||+|+.||+|++||+.+++.                      ......+|.         
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~----------------------~~~~~~~h~---------   55 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS----------------------NRVFPDVHA---------   55 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------EECSSCSCS---------
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----------------------EEEEcCCCC---------
Confidence            4568999999999999999999999999999999877653                      112224677         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|++++|+|  ++ .+++++.|+.+++|+..........                                     
T Consensus        56 ---~~v~~v~~~~--~g-~~~~~~~d~~v~~~~~~~~~~~~~~-------------------------------------   92 (299)
T d1nr0a2          56 ---TMITGIKTTS--KG-DLFTVSWDDHLKVVPAGGSGVDSSK-------------------------------------   92 (299)
T ss_dssp             ---SCEEEEEECT--TS-CEEEEETTTEEEEECSSSSSSCTTS-------------------------------------
T ss_pred             ---CcEEEEEeec--cc-eeecccceeeEEEeccCCccccccc-------------------------------------
Confidence               8899999965  55 4777888999999998654311100                                     


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                                          .....+...+.+++|+++++.++++.++.+.+|+.....   . 
T Consensus        93 ------------------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~---~-  132 (299)
T d1nr0a2          93 ------------------------------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT---E-  132 (299)
T ss_dssp             ------------------------------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE---E-
T ss_pred             ------------------------------------ccccccccccccccccccccccccccccccccccccccc---c-
Confidence                                                002345567889999999999888888899999965221   1 


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                              ......+.+++|+|++ ++|++++.||.|++||++++....     ..          ...|...|.+++|+
T Consensus       133 --------~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~-----~~----------~~~~~~~i~~~~~~  188 (299)
T d1nr0a2         133 --------VPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSE-----VK----------TIVHPAEITSVAFS  188 (299)
T ss_dssp             --------EECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEE-----EE----------EEECSSCEEEEEEC
T ss_pred             --------cccccccccccccccc-cccccccccccccccccccccccc-----cc----------cccccccccccccc
Confidence                    1124557899999998 899999999999999998765311     11          23455789999999


Q ss_pred             ecCCEEEEEeC-CeEEEEEccCCCCCee---eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287          350 RNGRHILSRDY-MTLKLWDINMDSGPVA---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG  425 (513)
Q Consensus       350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  425 (513)
                      |++++|++++. +.|++||+.. +....   .+..|...               |++++|+|++++|++|+.||.|++||
T Consensus       189 ~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~h~~~---------------v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         189 NNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAK---------------VACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEEGGG-TTEESCCCCCCCCSSC---------------EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccc-cccccccccccccccc---------------cccccccccccceEEEcCCCEEEEEE
Confidence            99999999875 9999999986 43332   33334433               56899999999999999999999999


Q ss_pred             cCCCCccc-eeecCC-CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          426 CSEGSAES-TTLEAS-KNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       426 ~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +.++.... .....| ...+..+ +.+++++|++++.|+.|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         253 MNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             TTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEE
T ss_pred             CCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEE
Confidence            98764443 233344 4455555 4567789999999999999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=265.27  Aligned_cols=301  Identities=14%  Similarity=0.218  Sum_probs=215.6

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      +.|++++|+|  +|++|++|+ |++|+|||+.+++.............                     +.         
T Consensus        63 ~~V~~l~fs~--dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~---------------------~~---------  109 (388)
T d1erja_          63 SVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---------------------DP---------  109 (388)
T ss_dssp             SCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred             CcEEEEEECC--CCCEEEEEe-CCeEEEEEecccceEeeecccccccc---------------------cc---------
Confidence            9999999954  888988876 89999999998876654332211000                     00         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                  ..........|...|.+++|+|++++|++| .||.|++||...++...    
T Consensus       110 ----------------------------~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~----  157 (388)
T d1erja_         110 ----------------------------ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM----  157 (388)
T ss_dssp             -------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred             ----------------------------cccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccc----
Confidence                                        000001124678889999999999999998 79999999998765443    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-  350 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-  350 (513)
                          .+.+|...|.++.+++++ ..+++++.++.+++||.++....    ....             +.....++.+++ 
T Consensus       158 ----~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~----~~~~-------------~~~~~~~~~~~~~  215 (388)
T d1erja_         158 ----ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCS----LTLS-------------IEDGVTTVAVSPG  215 (388)
T ss_dssp             ----EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE-------------CSSCEEEEEECST
T ss_pred             ----cccccccccccccccccc-ccccccccceeeeeeeccccccc----cccc-------------cccccccccccCC
Confidence                456789999999999998 89999999999999999876542    1111             113455666665 


Q ss_pred             cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                      ++.+|++++. +.|++||+.+ +.....+........        .....|++++|+|++++|++++.||.|++||+.++
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGT--------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTT-CCEEEEEC------C--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCeEEEEcCCCeEEEeeccc-Cccceeecccccccc--------CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            8899998875 9999999986 665555432211100        00112569999999999999999999999999765


Q ss_pred             Ccc-----------ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEE------
Q 010287          430 SAE-----------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA------  492 (513)
Q Consensus       430 ~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~------  492 (513)
                      ...           ......|...+.+++++|++++|++|+.||.|++   |+....+.......|.+.|++++      
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~v---wd~~~~~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF---WDKKSGNPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE---EETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEE---EECCCCcEEEEEeCCCCCEEEEEEecCcc
Confidence            321           2334468889999999999999999999999999   43332233334456899999987      


Q ss_pred             EeCCCCEEEEEc-CCcEEEEe
Q 010287          493 WHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       493 ~sp~~~~la~~~-~~~~~i~~  512 (513)
                      |+|++++||+++ |+.++||+
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEe
Confidence            567999999887 67888986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-32  Score=253.77  Aligned_cols=293  Identities=17%  Similarity=0.202  Sum_probs=230.7

Q ss_pred             cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (513)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      ..+..+.|.||.            +.|++++|+|  ++.+|++|+.||+|++||+.+++....                 
T Consensus        44 ~~~~~~tL~GH~------------~~I~~l~~s~--~~~~l~sgs~Dg~v~iWd~~~~~~~~~-----------------   92 (340)
T d1tbga_          44 QMRTRRTLRGHL------------AKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKVHA-----------------   92 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEE-----------------
T ss_pred             ceeeeEEECCCC------------CCEEEEEECC--CCCEEEEEECCCceeeeecccceeEEE-----------------
Confidence            344567789999            9999999965  778999999999999999998865432                 


Q ss_pred             cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  248 (513)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  248 (513)
                                                                                 +..|...|.+++|+|++++++
T Consensus        93 -----------------------------------------------------------~~~~~~~v~~v~~~~~~~~l~  113 (340)
T d1tbga_          93 -----------------------------------------------------------IPLRSSWVMTCAYAPSGNYVA  113 (340)
T ss_dssp             -----------------------------------------------------------EECSCSCEEEEEECTTSSEEE
T ss_pred             -----------------------------------------------------------EecccccEEeeEeeccceeee
Confidence                                                                       246778899999999999999


Q ss_pred             EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      +| .|+.+++|+...........    ..+.+|...........+  ..+.....+.....++.......    ..    
T Consensus       114 ~~~~d~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~----  179 (340)
T d1tbga_         114 CGGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT----TT----  179 (340)
T ss_dssp             EEETTCCEEEEESSSSCSCCCEE----EEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEE----EE----
T ss_pred             eecccceeecccccccccccccc----eecccccccccccccccc--ccccccccccccccccccccccc----cc----
Confidence            98 79999999987554332211    244567776666666655  47788889999999987664431    11    


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS  406 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  406 (513)
                              ...+...+....+.+.+.+++++.. +.|++||++. ++++..+.+|...               |++++|+
T Consensus       180 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~---------------i~~v~~~  235 (340)
T d1tbga_         180 --------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFF  235 (340)
T ss_dssp             --------EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSC---------------EEEEEEC
T ss_pred             --------ccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeCCCCC---------------eEEEEEC
Confidence                    1223357888999999999999875 9999999996 8888888887765               5599999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287          407 GDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS  485 (513)
Q Consensus       407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  485 (513)
                      |++++|++|+.||.|++|++....... .....+..++..+.|+|++++|++|+.||.|++   |+....+.......|.
T Consensus       236 p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~i---wd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV---WDALKADRAGVLAGHD  312 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEE---EETTTCCEEEEECCCS
T ss_pred             CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEE---EECCCCcEEEEEcCCC
Confidence            999999999999999999998774432 234566778999999999999999999999999   4333223333445689


Q ss_pred             CCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          486 MKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       486 ~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ..|++++|+|++++||+++ |+.++||+
T Consensus       313 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999887 67888985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-33  Score=259.35  Aligned_cols=323  Identities=11%  Similarity=0.189  Sum_probs=228.7

Q ss_pred             ccccccccE-EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        30 ~~~~h~~~V-~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ...+|.+.| +|++|  ++++||||+.||+|+|||+.+++                       ....+.+|+        
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~--------   53 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------   53 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----------------------EEEEEECCS--------
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEECCC--------
Confidence            456898875 66655  57899999999999999987655                       346688898        


Q ss_pred             ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (513)
                          +.|++++|+|  + .+|++++.|++|++|++............                                 
T Consensus        54 ----~~V~~l~~s~--~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~---------------------------------   93 (355)
T d1nexb2          54 ----GGVWALKYAH--G-GILVSGSTDRTVRVWDIKKGCCTHVFEGH---------------------------------   93 (355)
T ss_dssp             ----SCEEEEEEET--T-TEEEEEETTCCEEEEETTTTEEEEEECCC---------------------------------
T ss_pred             ----CCEEEEEEcC--C-CEEEEEecccccccccccccccccccccc---------------------------------
Confidence                8999999965  3 58999999999999999887654432211                                 


Q ss_pred             ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287          189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  267 (513)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~  267 (513)
                                                               .+........+.++++.++++ .|+.|++||+.+.....
T Consensus        94 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~  132 (355)
T d1nexb2          94 -----------------------------------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  132 (355)
T ss_dssp             -----------------------------------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----
T ss_pred             -----------------------------------------cccccccccccccccceeeeecCCCcEEEEEccCCceec
Confidence                                                     111224556678888889988 79999999998654322


Q ss_pred             eecccCc---------------cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287          268 NIVDVKP---------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  332 (513)
Q Consensus       268 ~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  332 (513)
                      .......               .....|...+..  +.+++ ++++++..|+.|++||+++++.    ...+.       
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~-~~~~~~~~d~~i~~~d~~~~~~----~~~~~-------  198 (355)
T d1nexb2         133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHG-NIVVSGSYDNTLIVWDVAQMKC----LYILS-------  198 (355)
T ss_dssp             ------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEET-TEEEEEETTSCEEEEETTTTEE----EEEEC-------
T ss_pred             cccccceeccceeccccccceeeeeeeccccccc--ccccc-ceeeeecccceeeeeecccccc----eeeee-------
Confidence            1100000               011223333333  44555 7899999999999999988764    22222       


Q ss_pred             ccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287          333 RSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR  411 (513)
Q Consensus       333 ~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  411 (513)
                           ++...+.++.++|++.++++++. +.|++||+++ +..+..+.+|...               |.+++++  +++
T Consensus       199 -----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~---------------v~~~~~~--~~~  255 (355)
T d1nexb2         199 -----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL---------------VGLLRLS--DKF  255 (355)
T ss_dssp             -----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------CCEEEEC--SSE
T ss_pred             -----ccccccccccccccceeeecccccceEEeeeccc-ccccccccccccc---------------ccccccc--cce
Confidence                 23367899999999999999875 9999999996 8888888888765               3477776  569


Q ss_pred             EEEEeCCCcEEEEecCCCCccceeecCCCCceeEE-EEcCCCCceeeecCCCeEEEecCCCCCccccC-CccccccCCee
Q 010287          412 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLL  489 (513)
Q Consensus       412 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~i~  489 (513)
                      |++|+.||.|++||+.+..   ..+..|...+..+ .++++++++++| .|+.|++   |+....+.. .....|..+|.
T Consensus       256 l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~v---wd~~tg~~~~~~~~~~~~~V~  328 (355)
T d1nexb2         256 LVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNI---YNLRSGKLVHANILKDADQIW  328 (355)
T ss_dssp             EEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEE---EETTTCCBCCSCTTTTCSEEE
T ss_pred             eeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eCCEEEE---EECCCCCEEEEEecCCCCCEE
Confidence            9999999999999998663   3445566666655 456677666665 5899999   443322222 23456889999


Q ss_pred             EEEEeCCCCEEEEEc-CCcEEEE
Q 010287          490 HLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       490 ~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                      +++|+|+. ++++++ ++.++||
T Consensus       329 ~v~~~~~~-~~~~~s~dg~~~l~  350 (355)
T d1nexb2         329 SVNFKGKT-LVAAVEKDGQSFLE  350 (355)
T ss_dssp             EEEEETTE-EEEEEESSSCEEEE
T ss_pred             EEEEcCCe-EEEEEECCCcEEEE
Confidence            99999974 566665 6666666

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-33  Score=250.21  Aligned_cols=285  Identities=12%  Similarity=0.117  Sum_probs=210.3

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      ..+.++||+            +.|++++|+|  ++++|++|+.||+|++||+++++.....                   
T Consensus         4 ~~~~~~GH~------------~~V~~l~~s~--dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-------------------   50 (299)
T d1nr0a2           4 IDQVRYGHN------------KAITALSSSA--DGKTLFSADAEGHINSWDISTGISNRVF-------------------   50 (299)
T ss_dssp             EEEEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEECS-------------------
T ss_pred             cceEcCCCC------------CCcEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEE-------------------
Confidence            446789999            9999999965  7889999999999999999887644321                   


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD  251 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  251 (513)
                                                                              ..+|...|.+++|+|++++++++.
T Consensus        51 --------------------------------------------------------~~~h~~~v~~v~~~~~g~~~~~~~   74 (299)
T d1nr0a2          51 --------------------------------------------------------PDVHATMITGIKTTSKGDLFTVSW   74 (299)
T ss_dssp             --------------------------------------------------------SCSCSSCEEEEEECTTSCEEEEET
T ss_pred             --------------------------------------------------------cCCCCCcEEEEEeeccceeecccc
Confidence                                                                    246778899999999998887778


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  331 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  331 (513)
                      |+.+++|+.........     ......+...+.+++|+|++ .++++ +.++.+++|+......      ..       
T Consensus        75 d~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~g-~~~~~-~~~~~i~~~~~~~~~~------~~-------  134 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSS-----KAVANKLSSQPLGLAVSADG-DIAVA-ACYKHIAIYSHGKLTE------VP-------  134 (299)
T ss_dssp             TTEEEEECSSSSSSCTT-----SCCEEECSSCEEEEEECTTS-SCEEE-EESSEEEEEETTEEEE------EE-------
T ss_pred             eeeEEEeccCCcccccc-----cccccccccccccccccccc-ccccc-cccccccccccccccc------cc-------
Confidence            99999999874432111     01234567789999999998 65554 4567899998543211      11       


Q ss_pred             CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee-eeecccccccccccccccCCccceeeEEEeCCC
Q 010287          332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                             ....+.+++|+|+++++++|+. +.|++||++. +.... ....|...               |++++|+|++
T Consensus       135 -------~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-~~~~~~~~~~~~~~---------------i~~~~~~~~~  191 (299)
T d1nr0a2         135 -------ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVSEVKTIVHPAE---------------ITSVAFSNNG  191 (299)
T ss_dssp             -------CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEEEEEEEECSSC---------------EEEEEECTTS
T ss_pred             -------ccccccccccccccccccccccccccccccccc-cccccccccccccc---------------cccccccccc
Confidence                   1135788999999999999875 9999999985 43322 22233332               5589999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccc--eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---cCCccccc
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---ANGNAFDF  484 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~  484 (513)
                      ++|++++.|+.|++||+.++....  ..+.+|..+|.+++|+|++++|++|+.|+.|++   |+.....   .......+
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~i---wd~~~~~~~~~~~~~~~~  268 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV---WNMNKPSDHPIIIKGAHA  268 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE---EETTCTTSCCEEETTSST
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEE---EECCCCCcceEEEecCCC
Confidence            999999999999999998764432  456789999999999999999999999999999   3322111   11111123


Q ss_pred             cCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          485 SMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       485 ~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      ...|..+.|. ++++|++++ |+.+++|+
T Consensus       269 ~~~v~~~~~~-~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         269 MSSVNSVIWL-NETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             TSCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             CCcEEEEEEC-CCCEEEEEeCCCEEEEEe
Confidence            4567777665 456777666 77899997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-33  Score=253.28  Aligned_cols=296  Identities=11%  Similarity=0.089  Sum_probs=213.8

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCc-EEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (513)
                      ..+++++|+|+|+.||.++.+.. |+.|+......                     .....+.+|.           ...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~gh~-----------~~~   65 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTGHG-----------SSV   65 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECTTT-----------TSC
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeCCC-----------CCC
Confidence            45689999999999999865532 44454322221                     1223456664           167


Q ss_pred             ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      |++++|+|..++.+|++++.||+|++||+..++........                                       
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~---------------------------------------  106 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---------------------------------------  106 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---------------------------------------
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc---------------------------------------
Confidence            99999998888889999999999999999876432221111                                       


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                   .......|.++|.+++|++++++++++   .++.+.+|+.++++...    
T Consensus       107 -----------------------------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----  153 (325)
T d1pgua1         107 -----------------------------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG----  153 (325)
T ss_dssp             -----------------------------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE----
T ss_pred             -----------------------------cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce----
Confidence                                         001134677889999999999998875   37889999998765443    


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.+++|+|+++.++++++.|+.+++||.+..+..    ..+..         ..+|...|.+++|+|+
T Consensus       154 ----~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~---------~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         154 ----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT---------HHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             ----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS---------SSCTTCCEEEEEECST
T ss_pred             ----eeeecccccccccccccccceEEEeecccccccccccccccc----eeccc---------ccCCCCccEEeeeccc
Confidence                457899999999999998667889999999999998775532    11111         2345678999999996


Q ss_pred             -CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          352 -GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       352 -~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                       +.++++++ |+.|++||+++ ++.+..+.+|.......           ++++.| |++++|++++.|+.|+|||++++
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~-----------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGG-----------IFALSW-LDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSC-----------EEEEEE-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             cceeccccccccceeeeeecc-ccccccccccccccccc-----------eeeeec-cCCCEEEEEeCCCeEEEEECCCC
Confidence             67888876 59999999996 88888888777553210           123333 68999999999999999999987


Q ss_pred             CccceeecCCCC--ceeEEEEcCC-CCceeeecCCCeEEE
Q 010287          430 SAESTTLEASKN--PMRRQVQTPS-RPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~d~~i~~  466 (513)
                      + .+..+..+..  .+..+.+.+. ...|++++.||.|++
T Consensus       284 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v  322 (325)
T d1pgua1         284 K-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF  322 (325)
T ss_dssp             E-EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred             C-EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence            4 4455544443  3444444433 347899999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-32  Score=247.86  Aligned_cols=312  Identities=11%  Similarity=0.161  Sum_probs=219.9

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.+.|.+ +++++|++||||+.||+|+|||+.+++                       ....+.+|.         
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~h~---------   57 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT---------   57 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEEeCCC---------
Confidence            46689999865 467789999999999999999987765                       335678898         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|+|  +  +|++++.|+++++|+...........                                    
T Consensus        58 ---~~V~~v~~~~--~--~l~s~s~D~~~~~~~~~~~~~~~~~~------------------------------------   94 (342)
T d2ovrb2          58 ---GGVWSSQMRD--N--IIISGSTDRTLKVWNAETGECIHTLY------------------------------------   94 (342)
T ss_dssp             ---SCEEEEEEET--T--EEEEEETTSCEEEEETTTTEEEEEEC------------------------------------
T ss_pred             ---CCEEEEEeCC--C--ccccceecccccccccccccceeccc------------------------------------
Confidence               8899999954  3  89999999999999998765433211                                    


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  268 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~  268 (513)
                                                              .+...+.....  ....+..+ .|+.+.+|+..+++....
T Consensus        95 ----------------------------------------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~  132 (342)
T d2ovrb2          95 ----------------------------------------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHV  132 (342)
T ss_dssp             ----------------------------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred             ----------------------------------------ccceeEeeeec--ccccccccccceeEEEeecccccceee
Confidence                                                    11122333322  23455555 799999999987765432


Q ss_pred             ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      +        ..+...  .....+.. ..++.++.|+.|++||.+....    ...+..            |...+  ..+
T Consensus       133 ~--------~~~~~~--~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~----~~~~~~------------~~~~~--~~~  183 (342)
T d2ovrb2         133 L--------MGHVAA--VRCVQYDG-RRVVSGAYDFMVKVWDPETETC----LHTLQG------------HTNRV--YSL  183 (342)
T ss_dssp             E--------ECCSSC--EEEEEECS-SCEEEEETTSCEEEEEGGGTEE----EEEECC------------CSSCE--EEE
T ss_pred             e--------eccccc--ceeecccc-ceeeeecCCCeEEEeeccccee----eEEEcC------------ccccc--ccc
Confidence            2        112222  22333444 6788999999999999987654    233332            33334  445


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      ++++.++++++. +.|++||++. .+.+..+..|...               +.++.  +++++|++++.|+.|++||+.
T Consensus       184 ~~~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~---------------v~~~~--~~~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         184 QFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL---------------TSGME--LKDNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             EECSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC---------------EEEEE--EETTEEEEEETTSCEEEEETT
T ss_pred             cCCCCEEEEEeCCCeEEEeeccc-ceeeeEecccccc---------------eeEEe--cCCCEEEEEcCCCEEEEEecc
Confidence            667889999875 9999999996 7888888877755               22444  456799999999999999998


Q ss_pred             CCCccceeec---CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccC-----CccccccCCeeEEEEeCCCCE
Q 010287          428 EGSAESTTLE---ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-----GNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       428 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~sp~~~~  499 (513)
                      ..+.. ..+.   .|...+..+.+  ++.++++|+.||.|++   |+....+..     .....|...|++++|+|++.+
T Consensus       246 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~i---wd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~  319 (342)
T d2ovrb2         246 TGQCL-QTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKL---WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  319 (342)
T ss_dssp             TCCEE-EEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEE---EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             ccccc-ccccccceeeeceeeccc--CCCeeEEEcCCCEEEE---EECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence            76433 4444   34455555555  5579999999999999   333211111     112247788999999999999


Q ss_pred             EEEEcCCc-----EEEEe
Q 010287          500 IACAASNS-----LYMYY  512 (513)
Q Consensus       500 la~~~~~~-----~~i~~  512 (513)
                      ||+|+.++     +.+|.
T Consensus       320 la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         320 CAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEECSSSSSCCEEEEEE
T ss_pred             EEEEeCCCCCeeEEEEEe
Confidence            99999776     67764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-31  Score=248.76  Aligned_cols=256  Identities=12%  Similarity=0.142  Sum_probs=191.3

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ++|+|++|+|  ++.+|++++.|+.|++||+.+++.....                                        
T Consensus         8 ~pIt~~~~s~--dg~~la~~~~~~~i~iw~~~~~~~~~~~----------------------------------------   45 (371)
T d1k8kc_           8 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVH----------------------------------------   45 (371)
T ss_dssp             SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEE----------------------------------------
T ss_pred             CCeEEEEECC--CCCEEEEEeCCCEEEEEECCCCCEEEEE----------------------------------------
Confidence            6799999955  8889999999999999999877543321                                        


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                        .+.+|.+.|.+++|+|++++|+++ .|++|++||+.+.......  
T Consensus        46 ----------------------------------~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~--   89 (371)
T d1k8kc_          46 ----------------------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL--   89 (371)
T ss_dssp             ----------------------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE--
T ss_pred             ----------------------------------EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc--
Confidence                                              146899999999999999999998 7999999999865433221  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                          .+.+|...|.+++|+|++ +.|++++.|+.|++|++........    ...        ....|...|.+++|+|+
T Consensus        90 ----~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~----~~~--------~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          90 ----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV----CKH--------IKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             ----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE----EEE--------ECTTCCSCEEEEEECTT
T ss_pred             ----cccccccccccccccccc-ccceeecccCcceeeeeeccccccc----ccc--------ccccccccccccccccc
Confidence                456788999999999998 8999999999999999876543111    111        12446678999999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc--cccccccc-ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL--RPKLCDLY-ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS  427 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  427 (513)
                      +++|++|+. +.|++|+... .............  ........ .......+.+++|+|++++|++++.|+.|++||+.
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             ccceeccccCcEEEEEeecc-CccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence            999999875 9999999874 2211111100000  00000000 00111235689999999999999999999999999


Q ss_pred             CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      ++ .....+..|..+|.+++|+|++++|++|+ |+.+++
T Consensus       232 ~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~  268 (371)
T d1k8kc_         232 KK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVL  268 (371)
T ss_dssp             GT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEE
T ss_pred             cc-cceeeeecccccceeeeecCCCCEEEEEc-CCceEE
Confidence            87 45578889999999999999999998876 555444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-31  Score=246.27  Aligned_cols=316  Identities=9%  Similarity=0.116  Sum_probs=202.6

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      ..+|.+.|.++++++  ++|+||+.|++|+|||..+.+...                |.... .....|.          
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------~~~~~-~~~~~~~----------   60 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------PKDKS-YSHFVHK----------   60 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------GGGGE-EEEECCT----------
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------cccee-Eeeeecc----------
Confidence            358999999999875  699999999999999976544310                00000 0111222          


Q ss_pred             ccccceeEE---Eeec--CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          111 IEEKINKIR---WCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       111 ~~~~i~~i~---~~~~--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                        ..+..+.   ..+.  .+..++++++.||.|++|++.............                             
T Consensus        61 --~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~-----------------------------  109 (393)
T d1sq9a_          61 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK-----------------------------  109 (393)
T ss_dssp             --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE-----------------------------
T ss_pred             --CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccc-----------------------------
Confidence              1121111   1111  123467788999999999986543211110000                             


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-----CCEEEEE-cCCeEEEEE
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINLWN  259 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~-~d~~i~vwd  259 (513)
                                                ....           ....+...+..++|.++     +.+++++ .||++++|+
T Consensus       110 --------------------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_         110 --------------------------LDLL-----------DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             --------------------------ECCS-----------CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             --------------------------ccee-----------eeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence                                      0000           00123344666777654     4567776 799999999


Q ss_pred             cCCCcceeeecc----------cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          260 LEISNQSFNIVD----------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       260 ~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                      +...........          ........+...+.+++|+|++  +|++|+.|+.|++||+++++.    +..++... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~----~~~~~~~~-  225 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP----LYNFESQH-  225 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE----EEEEECCC-
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccc----cccccccc-
Confidence            864321110000          0011223456678999999986  789999999999999998765    33333322 


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEeC-C---eEEEEEccCCCCCeeeeecccccccccccc-cccCCccceeeEE
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDL-YENDSIFDKFECC  404 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  404 (513)
                           .+.+|..+|.+++|+|+|++|++|++ +   .|++||+.+ ++.+..+............+ .|..   .|++++
T Consensus       226 -----~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~---~V~~l~  296 (393)
T d1sq9a_         226 -----SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSS---WVMSLS  296 (393)
T ss_dssp             --------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSS---CEEEEE
T ss_pred             -----ccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccC---ceeeec
Confidence                 25678899999999999999999763 3   699999996 77777665332221111111 1112   266999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee----EEEEcCCCCceeeecC
Q 010287          405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR----RQVQTPSRPSRPLGSL  460 (513)
Q Consensus       405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~~  460 (513)
                      |+||+++|++|+.|++|++||++++ +.+.++++|..+|.    .+++++++..+++++.
T Consensus       297 fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         297 FNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             cCCCCCeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            9999999999999999999999988 56688999998886    4788999988877653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.7e-30  Score=235.69  Aligned_cols=257  Identities=16%  Similarity=0.244  Sum_probs=187.0

Q ss_pred             cccc-cccEEEEEEcC--CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           31 EVQE-VDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        31 ~~~h-~~~V~~v~~sp--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      ..+| ...|++++|+|  +|.+||+|+.||+|+|||+...+.....               .......+..|.       
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~---------------~~~~~~~~~~~~-------  115 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV---------------EVNVKSEFQVLA-------  115 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE---------------EEEEEEEEECCS-------
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee---------------eccccccccccc-------
Confidence            4456 57899999998  5789999999999999998765532000               111222344565       


Q ss_pred             cccccccceeEEEeecCCCceEEEee--cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                           .+|.+++|+  +++.++++++  .++.+++|+.++++....                                  
T Consensus       116 -----~~v~~v~~s--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  154 (325)
T d1pgua1         116 -----GPISDISWD--FEGRRLCVVGEGRDNFGVFISWDSGNSLGE----------------------------------  154 (325)
T ss_dssp             -----SCEEEEEEC--TTSSEEEEEECCSSCSEEEEETTTCCEEEE----------------------------------
T ss_pred             -----CcEEEEEEC--CCCCccceeeccccceEEEEeeccccccee----------------------------------
Confidence                 889999995  4777888765  477899999987654332                                  


Q ss_pred             cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCCC
Q 010287          186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEIS  263 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~~  263 (513)
                                                                +.+|...|.+++|+|+++. ++++ .|+.+++||....
T Consensus       155 ------------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  192 (325)
T d1pgua1         155 ------------------------------------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  192 (325)
T ss_dssp             ------------------------------------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             ------------------------------------------eeecccccccccccccccceEEEeeccccccccccccc
Confidence                                                      2467788999999998876 4556 6999999999866


Q ss_pred             cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287          264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  343 (513)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  343 (513)
                      +......     ....|...|.+++|+|++..+|++++.|+.|++||+++++.    +..+..+            ..++
T Consensus       193 ~~~~~~~-----~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~------------~~~v  251 (325)
T d1pgua1         193 KFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDD------------QEPV  251 (325)
T ss_dssp             EEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBT------------TBCC
T ss_pred             ccceecc-----cccCCCCccEEeeeccccceeccccccccceeeeeeccccc----ccccccc------------cccc
Confidence            5443322     34677889999999998658999999999999999988775    3444433            2344


Q ss_pred             EEEEEe---ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          344 SDIKFA---RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       344 ~~i~~s---p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      .++.|+   |++++|++++ |+.|+|||+++ ++++..+..+.......           ..++.+.++ .+|++++.||
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~l~s~s~dg  318 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQ-----------QVGVVATGN-GRIISLSLDG  318 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGC-----------EEEEEEEET-TEEEEEETTS
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCC-CCEEEEEEecCCcccCe-----------EEEEEECCC-CEEEEEECCC
Confidence            444444   5889999977 49999999996 78888877666432210           113344433 4789999999


Q ss_pred             cEEEEec
Q 010287          420 LFRVFGC  426 (513)
Q Consensus       420 ~i~vwd~  426 (513)
                      .|++||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-30  Score=234.87  Aligned_cols=304  Identities=9%  Similarity=0.003  Sum_probs=202.5

Q ss_pred             cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (513)
Q Consensus        31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  110 (513)
                      +-+|++.|++|+|+|++++||+|+.||+|+|||+.+....                   ..+ ....+|.          
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-------------------~~~-~~~~~h~----------   56 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-------------------VDL-LQSLRYK----------   56 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-------------------EEE-EEEEECS----------
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-------------------eEE-EEecCCC----------
Confidence            4579999999999999999999999999999998765431                   111 1223566          


Q ss_pred             ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                        .+|.+++|+|. ++.+|++|+.|+.|++|++..+.......                                     
T Consensus        57 --~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~~~~~~-------------------------------------   96 (342)
T d1yfqa_          57 --HPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALT-------------------------------------   96 (342)
T ss_dssp             --SCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSEEECB-------------------------------------
T ss_pred             --CCEEEEEEeCC-CCCEEEEcccccceeeeeccccccccccc-------------------------------------
Confidence              88999999873 34688999999999999998765333211                                     


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~  269 (513)
                                                            ..+........+.++...++++ .++.+++||++........
T Consensus        97 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~  138 (342)
T d1yfqa_          97 --------------------------------------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             --------------------------------------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             --------------------------------------ccccccccccccccccccccccccccccceeeccccccceee
Confidence                                                  1111223344556677778877 7999999998755433222


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  349 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  349 (513)
                      ....  ...........+.+.+.+ ..+++++.|+.|++||++...........             ..+...+.+..+.
T Consensus       139 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~  202 (342)
T d1yfqa_         139 VKNL--NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEE-------------SGLKYQIRDVALL  202 (342)
T ss_dssp             EEES--CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEE-------------CSCSSCEEEEEEC
T ss_pred             eccc--ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeee-------------cccccceeeeEee
Confidence            1100  111122334456677776 78999999999999999876643221111             1112345666665


Q ss_pred             e-cCCEEEEEeC-CeEEEEEccCCCCCee-----eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287          350 R-NGRHILSRDY-MTLKLWDINMDSGPVA-----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR  422 (513)
Q Consensus       350 p-~~~~l~~~~~-~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  422 (513)
                      + ++..+++++. |.+.+|+.........     .+..+..      ..........+++++|+|++++|++|+.||.|+
T Consensus       203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~  276 (342)
T d1yfqa_         203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL------NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC------CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee------ccCCCcccccceeEEecCCccEEEEECCCCEEE
Confidence            5 6777887764 9999999874221111     1111110      001112233467999999999999999999999


Q ss_pred             EEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          423 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       423 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      +||+.+++++ ..+..+ .+...++++|++++|++++.|+.+++
T Consensus       277 vWD~~~~~~l-~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         277 CWNLQTRKKI-KNFAKF-NEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             EEETTTTEEE-EECCCC-SSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             EEECCCCcEE-EEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence            9999987433 444332 34456778889999999988887766

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-29  Score=222.89  Aligned_cols=270  Identities=13%  Similarity=0.263  Sum_probs=204.1

Q ss_pred             ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ..|...|+|++|  +|++||||+.||+|+|||+.+++                       ....+.+|.           
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~-----------   55 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT-----------   55 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS-----------
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC-----------
Confidence            467889999764  78999999999999999987665                       346678898           


Q ss_pred             cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (513)
                       +.|++++|    ++++|++++.|+.|++|++..+.........                                    
T Consensus        56 -~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~------------------------------------   94 (293)
T d1p22a2          56 -GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHH------------------------------------   94 (293)
T ss_dssp             -SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCC------------------------------------
T ss_pred             -CCEeeeec----ccceeeccccccccccccccccccccccccc------------------------------------
Confidence             88999998    4569999999999999999887644321111                                    


Q ss_pred             CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287          192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                              .  .....+.+....++++ .++.+.+|+...........
T Consensus        95 ----------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          95 ----------------------------------------C--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             ----------------------------------------C--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ----------------------------------------c--cccccccccccceeecccccceeEeeccccccccccc
Confidence                                                    0  1122334455567766 79999999998665433221


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           .+..|...+..+.+.+.   .+++++.|+.|++||+++++.    +..+..            +...+..+.++ 
T Consensus       133 -----~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~----~~~~~~------------~~~~v~~~~~~-  187 (293)
T d1p22a2         133 -----VLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEF----VRTLNG------------HKRGIACLQYR-  187 (293)
T ss_dssp             -----EECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCE----EEEEEC------------CSSCEEEEEEE-
T ss_pred             -----cccccccccccceeccc---ccccccCCCceeeecCCCCcE----EEEEcc------------cccccccccCC-
Confidence                 44667888888888764   578899999999999988765    333333            33567666554 


Q ss_pred             cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          351 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       351 ~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                       +.+++++. |+.|++||++. ...+..+..+...                 ...+++++.+|++|+.||.|++||+...
T Consensus       188 -~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         188 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL-----------------VRCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC-----------------EEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             -CCeEEEecCCCEEEEEeccc-ceeeeeeccccee-----------------eeeccccceEEEEEcCCCEEEEEECCCC
Confidence             66888876 59999999996 7777777666554                 3467788999999999999999997543


Q ss_pred             C--------ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          430 S--------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       430 ~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .        .....+.+|..+|.++.+  ++++|++|+.||.|++
T Consensus       249 ~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         249 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  291 (293)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             ccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEE
Confidence            1        234677899999999988  4678999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-30  Score=230.69  Aligned_cols=263  Identities=15%  Similarity=0.163  Sum_probs=198.6

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  109 (513)
                      ...+|.++|++++|+|    |++|+.||+|++||+.+.                            ..+|.         
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------------~~~h~---------   46 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------------HQDHS---------   46 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------------ECCCC---------
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------------CCCCC---------
Confidence            4568999999999998    999999999999996432                            34677         


Q ss_pred             cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (513)
Q Consensus       110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (513)
                         ..|.+++|.+   +..+++++.|+++++|++...+.                                         
T Consensus        47 ---~~V~~~~~~~---~~~~~s~s~D~~v~~w~~~~~~~-----------------------------------------   79 (287)
T d1pgua2          47 ---NLIVSLDNSK---AQEYSSISWDDTLKVNGITKHEF-----------------------------------------   79 (287)
T ss_dssp             ---SCEEEEECCS---TTCCEEEETTTEEEETTEEEEEC-----------------------------------------
T ss_pred             ---CCEEEEEecC---CCeEEEEeecccccccccccccc-----------------------------------------
Confidence               7899999954   35789999999999999865321                                         


Q ss_pred             cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287          190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI  269 (513)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~  269 (513)
                                                                ...+.++++++++..++++.++.+.+|+..++.....+
T Consensus        80 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          80 ------------------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             ------------------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------------------------------------------ccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence                                                      02256678888888888888888999998866543221


Q ss_pred             cccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                              . +...  ..++++++ ..+++++.+ +.+++|++......    ..+           ...|...+.+++|
T Consensus       118 --------~-~~~~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~----~~~-----------~~~~~~~v~~~~~  170 (287)
T d1pgua2         118 --------R-LNSP--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVS----FDL-----------KTPLRAKPSYISI  170 (287)
T ss_dssp             --------E-CSSC--EEEEEECS-SEEEEEETTTSCEEEEETTEEEEE----EEC-----------SSCCSSCEEEEEE
T ss_pred             --------c-ccce--eeeeeccC-cceeeeccccceeeeeecccccee----eee-----------eeccCCceeEEEe
Confidence                    1 2233  34566776 566666665 57999998754431    111           1224468999999


Q ss_pred             eecCCEEEEEeC-CeEEEEEccCCCCCe-eeeecccccccccccccccCCccceeeEEEeC----------CCCEEEEEe
Q 010287          349 ARNGRHILSRDY-MTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----------DGGRVATGS  416 (513)
Q Consensus       349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~  416 (513)
                      +|++.+|++|+. |.|++||+.. +... ..+..|...               |.+++|+|          ++.+|++|+
T Consensus       171 s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~---------------v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         171 SPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEEE
T ss_pred             ccCccccccccccccccceeecc-cccccccccccccc---------------cceeeecccccccccccCCCCeeEeec
Confidence            999999999875 9999999986 4332 344555544               44777776          456899999


Q ss_pred             CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .|++|++||+++.......+.+|...|.++.|+|++ .|++++.|+.|++
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence            999999999987666667888999999999999986 5888999999998

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-28  Score=224.35  Aligned_cols=293  Identities=14%  Similarity=0.211  Sum_probs=208.5

Q ss_pred             ccccCCCCcccccccccccccc-eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           94 TEFQSHEPEFDYLKSLEIEEKI-NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ..|+||.            +.| +|++|    ++++|++|+.||+|+|||+.++++...                     
T Consensus         6 ~tL~GH~------------~~vitc~~~----~~~~l~tgs~Dg~i~vWd~~~~~~~~~---------------------   48 (355)
T d1nexb2           6 TTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQ---------------------   48 (355)
T ss_dssp             EEEECCS------------SSCEEEEEE----ETTEEEEEETTTEEEEEETTTTEEEEE---------------------
T ss_pred             EEECCcC------------CCcEEEEEE----CCCEEEEEeCCCeEEEEECCCCcEEEE---------------------
Confidence            4578998            665 67776    356999999999999999988765432                     


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  251 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  251 (513)
                                                                             +.+|.+.|.+++|+|+ .+|++| .
T Consensus        49 -------------------------------------------------------l~~H~~~V~~l~~s~~-~~l~s~s~   72 (355)
T d1nexb2          49 -------------------------------------------------------LSGHDGGVWALKYAHG-GILVSGST   72 (355)
T ss_dssp             -------------------------------------------------------EECCSSCEEEEEEETT-TEEEEEET
T ss_pred             -------------------------------------------------------EECCCCCEEEEEEcCC-CEEEEEec
Confidence                                                                   3578899999999986 477777 7


Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce-------ee
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-------LF  324 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~  324 (513)
                      |+.|++|+..........      ....+........+.+++ ..+++++.|+.|++||+++.........       ..
T Consensus        73 D~~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          73 DRTVRVWDIKKGCCTHVF------EGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             TCCEEEEETTTTEEEEEE------CCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             cccccccccccccccccc------cccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            999999999866544332      122334445667788887 8999999999999999987653211000       00


Q ss_pred             ccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287          325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC  403 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  403 (513)
                      ..............|...+.  .+.+++.+++++.. +.|++||+.. ++.+.....+...               +..+
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~---------------~~~~  207 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDR---------------IYST  207 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEE
T ss_pred             ccccccceeeeeeecccccc--ccccccceeeeecccceeeeeeccc-ccceeeeeccccc---------------cccc
Confidence            00000000111222333443  45667889998775 9999999986 6666666555443               3488


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc
Q 010287          404 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD  483 (513)
Q Consensus       404 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  483 (513)
                      .|+|+++++++++.|+.|++||+.++ .....+++|..+|.++.+++  ++|++|+.||.|++   |+...  .......
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~i---wd~~~--~~~~~~~  279 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRG---WDAND--YSRKFSY  279 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEE---EETTT--CCEEEEE
T ss_pred             cccccceeeecccccceEEeeecccc-cccccccccccccccccccc--ceeeeeeccccccc---ccccc--cceeccc
Confidence            99999999999999999999999987 55578899999999998864  69999999999999   33321  1112223


Q ss_pred             ccCCeeEE-EEeCCCCEEEEEcCCcEEEEe
Q 010287          484 FSMKLLHL-AWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       484 ~~~~i~~~-~~sp~~~~la~~~~~~~~i~~  512 (513)
                      |...+..+ .++|++++|++++++.+++|+
T Consensus       280 ~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd  309 (355)
T d1nexb2         280 HHTNLSAITTFYVSDNILVSGSENQFNIYN  309 (355)
T ss_dssp             ECTTCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence            55555554 578899999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-29  Score=223.47  Aligned_cols=266  Identities=9%  Similarity=0.077  Sum_probs=197.1

Q ss_pred             EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (513)
                      +.+.++||.            ++|++++|+|      |++|+.||+|++||+.++.                        
T Consensus         5 ~i~~l~gH~------------~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~------------------------   42 (287)
T d1pgua2           5 VLKTISGHN------------KGITALTVNP------LISGSYDGRIMEWSSSSMH------------------------   42 (287)
T ss_dssp             EEEEECCCS------------SCEEEEETTT------TEEEETTSCEEETTTTEEE------------------------
T ss_pred             eeEEECCCC------------CceEEEEECc------EEEEeCCCeEEEEECCCCC------------------------
Confidence            456789999            9999999943      8999999999999986542                        


Q ss_pred             ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  250 (513)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  250 (513)
                                                                               .+|...|.+++++++.. ++++ 
T Consensus        43 ---------------------------------------------------------~~h~~~V~~~~~~~~~~-~~s~s   64 (287)
T d1pgua2          43 ---------------------------------------------------------QDHSNLIVSLDNSKAQE-YSSIS   64 (287)
T ss_dssp             ---------------------------------------------------------CCCCSCEEEEECCSTTC-CEEEE
T ss_pred             ---------------------------------------------------------CCCCCCEEEEEecCCCe-EEEEe
Confidence                                                                     35677899999998765 4555 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|+++++|++...+               ....+.++.+++++ ..++ .+.++.+.+|+..++..    ...+...   
T Consensus        65 ~D~~v~~w~~~~~~---------------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~---  120 (287)
T d1pgua2          65 WDDTLKVNGITKHE---------------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDI----IKSVRLN---  120 (287)
T ss_dssp             TTTEEEETTEEEEE---------------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCE----EEEEECS---
T ss_pred             eccccccccccccc---------------cccceeeeeeccCC-ceEE-Eeecccceeeeccceee----eeecccc---
Confidence            79999999976321               23457788899887 5555 45677788999877664    2222211   


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEEEeC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSG  407 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~  407 (513)
                                .  ...++++++..++++. + +.+++|++.. ......+.. +...               +++++|+|
T Consensus       121 ----------~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~---------------v~~~~~s~  172 (287)
T d1pgua2         121 ----------S--PGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAK---------------PSYISISP  172 (287)
T ss_dssp             ----------S--CEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSC---------------EEEEEECT
T ss_pred             ----------c--eeeeeeccCcceeeeccccceeeeeeccc-cceeeeeeeccCCc---------------eeEEEecc
Confidence                      2  2346778888887765 4 6899999874 333222221 2221               55899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC----------CCceeeecCCCeEEEecCCCCCc-cc
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRRVKGADNSA-LD  476 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~~~~~~~~~-~~  476 (513)
                      ++++|++|+.||.|++||+.++......+.+|..+|.+++|+|.          +.++++|+.|+.|++   |+... .+
T Consensus       173 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i---w~~~~~~~  249 (287)
T d1pgua2         173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI---YSVKRPMK  249 (287)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE---EESSCTTC
T ss_pred             CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEE---EECCCCCe
Confidence            99999999999999999999875555667899999999999875          468999999999999   33221 11


Q ss_pred             cCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          477 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       477 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .......|...|++++|+|++.++.++.|+.+++|+
T Consensus       250 ~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence            222334689999999999998766677789999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=217.71  Aligned_cols=297  Identities=10%  Similarity=0.001  Sum_probs=199.2

Q ss_pred             eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (513)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ....++|+            +.|++|+|+|  ++.+|++++.||+|+|||+..+......                    
T Consensus         4 v~~~~~h~------------d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~~~~--------------------   49 (342)
T d1yfqa_           4 VQIEQAPK------------DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDL--------------------   49 (342)
T ss_dssp             EECSSCCS------------SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEE--------------------
T ss_pred             EEcCCCCC------------CCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcceEE--------------------
Confidence            34567888            8999999977  6779999999999999999765322110                    


Q ss_pred             cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-
Q 010287          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-  250 (513)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-  250 (513)
                                                                         .  ...+|...|.+++|+|++ .+|++| 
T Consensus        50 ---------------------------------------------------~--~~~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_          50 ---------------------------------------------------L--QSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             ---------------------------------------------------E--EEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             ---------------------------------------------------E--EecCCCCCEEEEEEeCCCCCEEEEcc
Confidence                                                               0  123688899999999865 567777 


Q ss_pred             cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287          251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  330 (513)
Q Consensus       251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  330 (513)
                      .|+.|++|++.........       ...+........+.++. ..+++++.++.+++||++.+..............  
T Consensus        77 ~d~~v~~w~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~--  146 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQAL-------TNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--  146 (342)
T ss_dssp             TTSCEEEECSSSSSSEEEC-------BSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--
T ss_pred             cccceeeeecccccccccc-------ccccccccccccccccc-ccccccccccccceeeccccccceeeeccccccc--
Confidence            7999999999876554331       12233334455556665 7899999999999999987654322121111111  


Q ss_pred             CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE-EeCC
Q 010287          331 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD  408 (513)
Q Consensus       331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~  408 (513)
                              .......+.+.+++..+++++. +.|++||+.. ...............            ...... ++.+
T Consensus       147 --------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~  205 (342)
T d1yfqa_         147 --------TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL-CEDDNGTIEESGLKY------------QIRDVALLPKE  205 (342)
T ss_dssp             --------SSSCCCEEEEEECSSEEEEEESTTEEEEEESSC-CTTCCCEEEECSCSS------------CEEEEEECSGG
T ss_pred             --------ccceeeeeeeeccCCceeeecCCCcEEEEeccc-Ccccceeeeeccccc------------ceeeeEeecCC
Confidence                    1123455677888888888775 9999999986 433332222211110            011333 4457


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccc--------------eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCc
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAES--------------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA  474 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  474 (513)
                      +..+++++.||.+.+|+........              .....|..++.+++|+|++++||+|+.||.|++   |+...
T Consensus       206 ~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~v---WD~~~  282 (342)
T d1yfqa_         206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC---WNLQT  282 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE---EETTT
T ss_pred             CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEE---EECCC
Confidence            7889999999999999876542211              112356678899999999999999999999999   44332


Q ss_pred             cccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287          475 LDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY  511 (513)
Q Consensus       475 ~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~  511 (513)
                      ..... .+.+...+..++|+|++++||+++ ++.+++|
T Consensus       283 ~~~l~-~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         283 RKKIK-NFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             TEEEE-ECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             CcEEE-EecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            11111 122235667788999999999775 5544333

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.7e-26  Score=202.44  Aligned_cols=269  Identities=17%  Similarity=0.275  Sum_probs=191.8

Q ss_pred             ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      ..|+|++|    ++++|++|+.||+|+|||+.++++...                                         
T Consensus        16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~-----------------------------------------   50 (293)
T d1p22a2          16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI-----------------------------------------   50 (293)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred             CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence            78998877    567999999999999999988765432                                         


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  271 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~  271 (513)
                                                         +.+|...|.+++|  ++++|++| .|+.|++|++..+......  
T Consensus        51 -----------------------------------l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~--   91 (293)
T d1p22a2          51 -----------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL--   91 (293)
T ss_dssp             -----------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE--
T ss_pred             -----------------------------------EecCCCCEeeeec--ccceeecccccccccccccccccccccc--
Confidence                                               3578888999887  56799998 7999999999876654322  


Q ss_pred             cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                            ..+..  ....+.+.. ..++++..++.+.+||......... ...            +..|...+..+.+.  
T Consensus        92 ------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~v~~~~~~--  147 (293)
T d1p22a2          92 ------IHHCE--AVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITL-RRV------------LVGHRAAVNVVDFD--  147 (293)
T ss_dssp             ------CCCCS--CEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEE-EEE------------ECCCSSCEEEEEEE--
T ss_pred             ------ccccc--ccccccccc-cceeecccccceeEeeccccccccc-ccc------------ccccccccccceec--
Confidence                  11222  223344444 6789999999999999887553211 111            23344677766665  


Q ss_pred             CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      ...+++++ ++.|++||++. .+.+..+.++...                 ...+++++.++++++.||.|++||+.+. 
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~i~d~~~~-  208 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG-----------------IACLQYRDRLVVSGSSDNTIRLWDIECG-  208 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC-
T ss_pred             ccccccccCCCceeeecCCC-CcEEEEEcccccc-----------------cccccCCCCeEEEecCCCEEEEEecccc-
Confidence            45566655 59999999996 7788777766654                 2334445679999999999999999987 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec---C---CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---G---ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~---~---~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      .......++...+..  +++++.+|++|+.||.|++.+   .   ..............|.+.|++++|+  +++|++++
T Consensus       209 ~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s  284 (293)
T d1p22a2         209 ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS  284 (293)
T ss_dssp             CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC
T ss_pred             eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe
Confidence            444667777777654  567788999999999999911   1   1111111112234689999999995  56788887


Q ss_pred             -CCcEEEEe
Q 010287          505 -SNSLYMYY  512 (513)
Q Consensus       505 -~~~~~i~~  512 (513)
                       |+.++||+
T Consensus       285 ~Dg~i~iWD  293 (293)
T d1p22a2         285 HDDTILIWD  293 (293)
T ss_dssp             SSSEEEEEC
T ss_pred             cCCEEEEeC
Confidence             56789885

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-27  Score=221.94  Aligned_cols=208  Identities=12%  Similarity=0.044  Sum_probs=138.9

Q ss_pred             CCEEEEE-cCCeEEEEEcCCCcceeeeccc--CccccccccCCeEEEEEeCCCC----eEEEEEeCCCcEEEEEcCCccc
Q 010287          244 GETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMEDLTEVITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSAL  316 (513)
Q Consensus       244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~  316 (513)
                      ..+++++ .||.|++|++............  .......+...+..++|.++..    .++++++.||.+++||+.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            3456666 6999999998765443222111  1112234556678888877531    6789999999999999864321


Q ss_pred             cccc-----ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          317 CDTH-----SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       317 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      ....     ........   .......+...+.+++|+|++ +|++|+. +.|++||+.+ ++++..+........    
T Consensus       159 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~----  229 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQG---TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMIN----  229 (393)
T ss_dssp             HHHHTTTCCCCEEEEEE---EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---C----
T ss_pred             ccceeeeeeccceeccc---ceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc-ccccccccccccccc----
Confidence            1000     00000000   000112344568999999997 7788775 9999999986 666655543221100    


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCc---EEEEecCCCCccceee-------------cCCCCceeEEEEcCCCCc
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTL-------------EASKNPMRRQVQTPSRPS  454 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~  454 (513)
                        +.   ..|.+++|+|||++|++|+.|++   |++||++++... ..+             .+|...|.+++|+|++++
T Consensus       230 --h~---~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~-~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~  303 (393)
T d1sq9a_         230 --NS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET  303 (393)
T ss_dssp             --CC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred             --cc---ceEEEcccccccceeeeecCCCCcceeeecccccceee-eeeccccccccceeeeecccCceeeeccCCCCCe
Confidence              00   12569999999999999998874   899999987432 333             479999999999999999


Q ss_pred             eeeecCCCeEEE
Q 010287          455 RPLGSLSGVVRR  466 (513)
Q Consensus       455 l~~~~~d~~i~~  466 (513)
                      |++|+.|+.|++
T Consensus       304 l~S~s~D~~v~v  315 (393)
T d1sq9a_         304 LCSAGWDGKLRF  315 (393)
T ss_dssp             EEEEETTSEEEE
T ss_pred             eEEECCCCEEEE
Confidence            999999999999

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.1e-27  Score=219.88  Aligned_cols=308  Identities=13%  Similarity=0.107  Sum_probs=211.9

Q ss_pred             EEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287           40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (513)
Q Consensus        40 ~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i  118 (513)
                      +-.||| ||+++|+++. |.|++|++.++...                        . -+|.            ..|.++
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~------------------------~-~~~~------------~~v~~~   48 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL------------------------K-VPEP------------LRIRYV   48 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEE------------------------E-CSCC------------SCEEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEE------------------------E-ccCC------------CCEEEE
Confidence            356999 9999999875 69999998765531                        1 2566            789999


Q ss_pred             EEeecCCCceEEEeecCC--eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287          119 RWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (513)
Q Consensus       119 ~~~~~~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (513)
                      +|+|  |++.|++++.+.  .|++||+++++...                                              
T Consensus        49 ~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~~~----------------------------------------------   80 (360)
T d1k32a3          49 RRGG--DTKVAFIHGTREGDFLGIYDYRTGKAEK----------------------------------------------   80 (360)
T ss_dssp             EECS--SSEEEEEEEETTEEEEEEEETTTCCEEE----------------------------------------------
T ss_pred             EECC--CCCEEEEEEcCCCCEEEEEECCCCcEEE----------------------------------------------
Confidence            9955  888888876653  79999998876433                                              


Q ss_pred             CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287          197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  275 (513)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~  275 (513)
                                                     +..|...|.+++|+|++++|+++ .++.+++|++.+.+...        
T Consensus        81 -------------------------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--------  121 (360)
T d1k32a3          81 -------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV--------  121 (360)
T ss_dssp             -------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------
T ss_pred             -------------------------------eeCCCceEEeeeecccccccceeccccccccccccccceee--------
Confidence                                           24566779999999999999998 79999999998765432        


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEe----------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  345 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  345 (513)
                      .+..|...+.+++|+|++ ++|+.+.          .++.+++||+.+++...                 ...+...+..
T Consensus       122 ~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-----------------~~~~~~~~~~  183 (360)
T d1k32a3         122 IERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-----------------ATTENSHDYA  183 (360)
T ss_dssp             EEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-----------------CSCSSSBEEE
T ss_pred             eeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-----------------eccccccccc
Confidence            345677888999999999 7777543          34568999998765421                 1223356888


Q ss_pred             EEEeecCCEEEEEeC-CeEEEEEccCCCCCe-------eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287          346 IKFARNGRHILSRDY-MTLKLWDINMDSGPV-------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY  417 (513)
Q Consensus       346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  417 (513)
                      +.|+|+|++|++++. +.+.+|+... ....       ..+..+...               +..+.|++++..++++..
T Consensus       184 ~~~spdg~~l~~~s~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~~~  247 (360)
T d1k32a3         184 PAFDADSKNLYYLSYRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGS---------------PNPTKLVPRSMTSEAGEY  247 (360)
T ss_dssp             EEECTTSCEEEEEESCCCCCEECSSS-SCEECCSCBEEEEEESSTTC---------------CCGGGCCCGGGSCCCCCC
T ss_pred             ccccCCCCEEEEEeCCCceEcccccc-cceeeccccceEEEecccCc---------------cccceECCCcCcccccce
Confidence            999999999998775 9999999764 2211       111111111               124567788777665544


Q ss_pred             CCc---EEEEecCCCCccceeecCCCCceeEEEEcCC---CCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEE
Q 010287          418 SNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS---RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL  491 (513)
Q Consensus       418 dg~---i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  491 (513)
                      +..   .++|.+.........+..+...+..+.+...   ..++++++.++.+++   ++...    .....|.+.|.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~d~~~----~~~~~~~~~v~~~  320 (360)
T d1k32a3         248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK---YDVKT----RKVTEVKNNLTDL  320 (360)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE---EETTT----CCEEEEEEEEEEE
T ss_pred             eecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEE---EECCC----CeEEEecCCcCEE
Confidence            321   2334333222222344444455555555444   447888999999998   33221    1223467789999


Q ss_pred             EEeCCCCEEEEEc-CCcEEEEeC
Q 010287          492 AWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       492 ~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      +|||||++|++++ ++.+++|.+
T Consensus       321 ~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         321 RLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             EECTTSCEEEEEETTSCEEEEES
T ss_pred             EECCCCCEEEEEECCCeEEEEEC
Confidence            9999999999887 677998863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-24  Score=197.56  Aligned_cols=275  Identities=16%  Similarity=0.234  Sum_probs=195.7

Q ss_pred             EeccccCCCCccccccccccccccee-EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287           92 YKTEFQSHEPEFDYLKSLEIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (513)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~i~~-i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      ....++||+            +.|.+ +.|    ++++|++|+.||+|+|||+.++++...                   
T Consensus         8 ~~~~l~GH~------------~~V~s~~~~----~g~~l~sgs~Dg~i~vWd~~~~~~~~~-------------------   52 (342)
T d2ovrb2           8 SPKVLKGHD------------DHVITCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRT-------------------   52 (342)
T ss_dssp             CCEEEECST------------TSCEEEEEE----ETTEEEEEETTSCEEEEETTTCCEEEE-------------------
T ss_pred             cCEEECCcC------------CceEEEEEE----CCCEEEEEeCCCeEEEEECCCCCEEEE-------------------
Confidence            345688998            77754 444    467999999999999999988765432                   


Q ss_pred             cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  250 (513)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  250 (513)
                                                                               +.+|...|.+++|+++  +|+++
T Consensus        53 ---------------------------------------------------------~~~h~~~V~~v~~~~~--~l~s~   73 (342)
T d2ovrb2          53 ---------------------------------------------------------LVGHTGGVWSSQMRDN--IIISG   73 (342)
T ss_dssp             ---------------------------------------------------------CCCCSSCEEEEEEETT--EEEEE
T ss_pred             ---------------------------------------------------------EeCCCCCEEEEEeCCC--ccccc
Confidence                                                                     3578888999999874  88888


Q ss_pred             -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287          251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  329 (513)
Q Consensus       251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  329 (513)
                       .|+.+++|+.........        ...+...+......+   ..+..+..|+.+.+|+..++...    ..+...  
T Consensus        74 s~D~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~----~~~~~~--  136 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHT--------LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL----HVLMGH--  136 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----EEEECC--
T ss_pred             eecccccccccccccceec--------ccccceeEeeeeccc---ccccccccceeEEEeecccccce----eeeecc--
Confidence             799999999986544322        233445555555544   46788999999999999887642    222211  


Q ss_pred             CCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          330 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                                  ........+....++.++ ++.|++||... ...+..+.+|...                 ...++++
T Consensus       137 ------------~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------~~~~~~~  186 (342)
T d2ovrb2         137 ------------VAAVRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNR-----------------VYSLQFD  186 (342)
T ss_dssp             ------------SSCEEEEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSC-----------------EEEEEEC
T ss_pred             ------------cccceeeccccceeeeecCCCeEEEeeccc-ceeeEEEcCcccc-----------------cccccCC
Confidence                        112233445566666665 59999999986 7777777776644                 5667778


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCe
Q 010287          409 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL  488 (513)
Q Consensus       409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i  488 (513)
                      +.+|++++.||.|++||+..+ .....+..|...+.++.+++  ++|++++.|+.|++.+...............|...+
T Consensus       187 ~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  263 (342)
T d2ovrb2         187 GIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV  263 (342)
T ss_dssp             SSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred             CCEEEEEeCCCeEEEeecccc-eeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeece
Confidence            999999999999999999987 45578888998888777654  699999999999993222221111122223456677


Q ss_pred             eEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          489 LHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       489 ~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                      .++++++  +++++++ ++.+++|+
T Consensus       264 ~~~~~~~--~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         264 TCLQFNK--NFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEEEECS--SEEEEEETTSEEEEEE
T ss_pred             eecccCC--CeeEEEcCCCEEEEEE
Confidence            7776654  6888777 66788886

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.8e-25  Score=211.45  Aligned_cols=330  Identities=11%  Similarity=0.040  Sum_probs=209.7

Q ss_pred             EcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEE
Q 010287           43 FDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (513)
Q Consensus        43 ~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~  120 (513)
                      ++++  +-++++.+.||+|+|||+.+++.                       ...+..|             ..+..++|
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~-----------------------~~~l~~g-------------~~~~~vaf   69 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTG-------------YAVHISRM   69 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSE-----------------------EEEEECC-------------SSEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCC-------------CCeeEEEE
Confidence            5555  33567888999999999887764                       2445444             34899999


Q ss_pred             eecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcC
Q 010287          121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP  200 (513)
Q Consensus       121 ~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  200 (513)
                      +|  ||+++++++.|++|++||+.+++.....++..                                            
T Consensus        70 SP--DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~--------------------------------------------  103 (426)
T d1hzua2          70 SA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--------------------------------------------  103 (426)
T ss_dssp             CT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--------------------------------------------
T ss_pred             CC--CCCEEEEEeCCCCEEEEEccCCceeEEEEEeC--------------------------------------------
Confidence            54  89999999999999999999887544332221                                            


Q ss_pred             CCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccC--c-c
Q 010287          201 PGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK--P-A  275 (513)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~--~-~  275 (513)
                                                 ..+|...+.+++|+|||++++++  .++.+.+||..+...........  . .
T Consensus       104 ---------------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2         104 ---------------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             ---------------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             ---------------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence                                       12445557778899999998765  59999999998765432211000  0 0


Q ss_pred             ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287          276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  355 (513)
Q Consensus       276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l  355 (513)
                      ....+......+.+++++..++.+....+.+.+++........  ..             ...+...+..+.|+|+++++
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VT-------------SIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE--EE-------------EEECCSSEEEEEECTTSCEE
T ss_pred             eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee--eE-------------EeccCCccEeeeECCCCcEE
Confidence            0112233445566666663444444445555555554433210  00             12334578999999999998


Q ss_pred             EEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EE--EEEeCCCcEEEEecCCCC
Q 010287          356 LSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RV--ATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       356 ~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l--~~~~~dg~i~vwd~~~~~  430 (513)
                      +++. . ..+.+++... ++.+............             ....+..++. .+  ++.+.|+.+.+|+.....
T Consensus       222 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         222 MTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             EEEETTCSEEEEEETTT-TEEEEEEECSSCCCCS-------------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             Eeeeecccceeeeeccc-ccEEEEeccCCccccc-------------ceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            8865 3 8899999986 6666555443322110             1233333332 22  234467788888765431


Q ss_pred             ------ccceeecCCCCceeEEEEcCCCCcee-------eecCCCeEEEecCCCCCccccCC---------ccccccCCe
Q 010287          431 ------AESTTLEASKNPMRRQVQTPSRPSRP-------LGSLSGVVRRVKGADNSALDANG---------NAFDFSMKL  488 (513)
Q Consensus       431 ------~~~~~~~~~~~~v~~~~~~~~~~~l~-------~~~~d~~i~~~~~~~~~~~~~~~---------~~~~~~~~i  488 (513)
                            +...++++|...+..++++|++++|+       +++.|+.|++   |.....+...         ...++..+|
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v---wd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV---FDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE---EETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE---EECCCCCcCeEEeccchhcccCCCCccE
Confidence                  33467889999999999999999999       4667889999   3222111111         112456779


Q ss_pred             eEEEEeCCCCEEEEE-----c-CCcEEEEeC
Q 010287          489 LHLAWHPSENSIACA-----A-SNSLYMYYA  513 (513)
Q Consensus       489 ~~~~~sp~~~~la~~-----~-~~~~~i~~~  513 (513)
                      .+++|||||++|.++     + ++.++||.+
T Consensus       365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             EEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             EEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            999999999977532     1 555888864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.9e-26  Score=210.56  Aligned_cols=284  Identities=10%  Similarity=0.029  Sum_probs=195.3

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecCCC--cEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      ..+.|...|++++|+|||++|++++.+.  .|++|+..+++.                        ..+..|.       
T Consensus        37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------------------------~~~~~~~-------   85 (360)
T d1k32a3          37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------------------EKFEENL-------   85 (360)
T ss_dssp             EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------------------EECCCCC-------
T ss_pred             EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------------------------EEeeCCC-------
Confidence            3458999999999999999998776443  699999877653                        3455676       


Q ss_pred             cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                           ..|.+++|+|  ++++|++++.++.+++|++.+++....                                    
T Consensus        86 -----~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------------  122 (360)
T d1k32a3          86 -----GNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVI------------------------------------  122 (360)
T ss_dssp             -----CSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----ceEEeeeecc--cccccceeccccccccccccccceeee------------------------------------
Confidence                 8899999955  888999999999999999988765433                                    


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-----------cCCeEE
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----------DDLRIN  256 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----------~d~~i~  256 (513)
                                                              ...|...+.+++|+|++++|+.+           .++.++
T Consensus       123 ----------------------------------------~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3         123 ----------------------------------------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             ----------------------------------------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             ----------------------------------------eecccccccchhhccceeeeeeeccccccceeecccccee
Confidence                                                    23445567789999999998853           245689


Q ss_pred             EEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccc
Q 010287          257 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  336 (513)
Q Consensus       257 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      +|++.+++..         .+..+...+..+.|+|++ +.|++++.++.+++||..............         ...
T Consensus       163 v~d~~~~~~~---------~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~---------~~~  223 (360)
T d1k32a3         163 VYDMEGRKIF---------AATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKP---------FVI  223 (360)
T ss_dssp             EEETTTTEEE---------ECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEE---------EEE
T ss_pred             eeccccCcee---------eecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccce---------EEE
Confidence            9999865433         234567778999999999 899999999999999976543211100000         001


Q ss_pred             ccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe---CCC
Q 010287          337 TEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDG  409 (513)
Q Consensus       337 ~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~  409 (513)
                      ..+...+..+.|++++..++++..    ...++|.+.........+..+...               +..+.+.   +++
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  288 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS---------------ILIYSVPVHGEFA  288 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE---------------EEEEECCCCCSHH
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCC---------------ceEEEEEecCCCe
Confidence            122233444566777776665321    122344333212222333333222               1123333   334


Q ss_pred             CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287          410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR  466 (513)
Q Consensus       410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  466 (513)
                      .++++++.++.|++||+.+++.     ..+...+..++|+|||++|++++.||.|++
T Consensus       289 ~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v  340 (360)
T d1k32a3         289 AYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSADRKTVMVRKDDGKIYT  340 (360)
T ss_dssp             HHHHCCCCCEEEEEEETTTCCE-----EEEEEEEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             eEEEecCCCCEEEEEECCCCeE-----EEecCCcCEEEECCCCCEEEEEECCCeEEE
Confidence            4678888999999999987632     234456889999999999999999999999

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.5e-24  Score=202.97  Aligned_cols=331  Identities=9%  Similarity=-0.007  Sum_probs=213.8

Q ss_pred             cCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeec
Q 010287           44 DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS  123 (513)
Q Consensus        44 sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~  123 (513)
                      +++.-++++.+.+|+|.|||..+++.                       ...+..|             ..+..++|+| 
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v-----------------------~~~~~~g-------------~~~~~v~fSp-   71 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRLSA-   71 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEECT-
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCC-------------CCeeEEEECC-
Confidence            33344568899999999999887764                       2344443             3489999954 


Q ss_pred             CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCC
Q 010287          124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG  203 (513)
Q Consensus       124 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  203 (513)
                       ||+++++++.|++|++||+.+++.....++..                                               
T Consensus        72 -DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-----------------------------------------------  103 (432)
T d1qksa2          72 -SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-----------------------------------------------  103 (432)
T ss_dssp             -TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-----------------------------------------------
T ss_pred             -CCCEEEEEcCCCCEEEEEeeCCCceEEEEEec-----------------------------------------------
Confidence             89999999999999999998876433322111                                               


Q ss_pred             CCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCc---cccc
Q 010287          204 VSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKP---ANME  278 (513)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~---~~~~  278 (513)
                                              ...|.+.+.+.+|+|||++|+ ++ .++.|++||.++++....+.....   ....
T Consensus       104 ------------------------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~  159 (432)
T d1qksa2         104 ------------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  159 (432)
T ss_dssp             ------------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             ------------------------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec
Confidence                                    123444566778899999875 45 699999999997764432211000   0112


Q ss_pred             cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          279 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       279 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      .+......+.++|++..++++...++.|.+||..+.+..    ......           +...+..+.|+|+|++++++
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~----~~~~i~-----------~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL----KTTEIS-----------AERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE----EEEEEE-----------CCSSEEEEEECTTSCEEEEE
T ss_pred             cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc----eEEEEc-----------ccCccccceECCCCCEEEEe
Confidence            345667789999999667778888999999998775431    111111           12457899999999988886


Q ss_pred             e-C-CeEEEEEccCCCCCeeeeeccccc-----c-----------c--------ccccc-----cccCCccceeeEEEeC
Q 010287          359 D-Y-MTLKLWDINMDSGPVATFQVHEHL-----R-----------P--------KLCDL-----YENDSIFDKFECCLSG  407 (513)
Q Consensus       359 ~-~-~~v~iwd~~~~~~~~~~~~~~~~~-----~-----------~--------~~~~~-----~~~~~~~~v~~~~~s~  407 (513)
                      + + ..+.++|... .+.+..+......     .           .        .+...     ........+....++|
T Consensus       225 ~~~~~~v~v~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~  303 (432)
T d1qksa2         225 ANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  303 (432)
T ss_dssp             EGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             ccccceEEEeeccc-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcC
Confidence            5 3 8999999875 4433332211100     0           0        00000     0000001244567778


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCC
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK  487 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  487 (513)
                      ++..+++++.++..++|+..+..       .|......+++ |+++.+++++.|+.+++   |...+.   ....+|..+
T Consensus       304 ~g~~~~~~s~p~~~~lw~~~~~~-------~~~~~~~sv~v-pDg~~la~~s~d~~~k~---w~~~~~---~~l~~~~~~  369 (432)
T d1qksa2         304 GGGSLFIKTHPNSQYLYVDATLN-------PEAEISGSVAV-FDIKAMTGDGSDPEFKT---LPIAEW---AGITEGQPR  369 (432)
T ss_dssp             CSCCCCEECCTTCSEEEEECTTC-------SSHHHHTCEEE-EEGGGCCCSSSCCCEEE---ECHHHH---HTCCSSCCE
T ss_pred             CCCeEEEEecCCccceeecccCC-------CCCCeeeEEEE-EechhhcccccCCceEe---cccccc---cccCCCCCc
Confidence            88888888888888888765431       12222334454 89999999999999999   332210   112246788


Q ss_pred             eeEEEEeCCCCEEEEEc------CCcEEEEeC
Q 010287          488 LLHLAWHPSENSIACAA------SNSLYMYYA  513 (513)
Q Consensus       488 i~~~~~sp~~~~la~~~------~~~~~i~~~  513 (513)
                      +.+++|||||++|+++.      ++.++||.+
T Consensus       370 v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         370 VVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            99999999999886442      456888864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=8.6e-22  Score=185.95  Aligned_cols=300  Identities=9%  Similarity=0.009  Sum_probs=194.3

Q ss_pred             ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (513)
Q Consensus        34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  113 (513)
                      +...+..++|||||++|++++.||.|++||+.+++..                  .........+|.            .
T Consensus        60 ~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~------------------~~~~i~~~~~~~------------~  109 (426)
T d1hzua2          60 TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT------------------KVAEIKIGIEAR------------S  109 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE------------------EEEEEECCSEEE------------E
T ss_pred             CCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee------------------EEEEEeCCCCCc------------c
Confidence            3357999999999999999999999999999877641                  000111223344            5


Q ss_pred             cceeEEEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287          114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (513)
Q Consensus       114 ~i~~i~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (513)
                      .+.+++|+  +||++++++ ..++.+++||..++.+............               ..               
T Consensus       110 ~~~s~~~s--pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~---------------  157 (426)
T d1hzua2         110 VESSKFKG--YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD---------------TQ---------------  157 (426)
T ss_dssp             EEECCSTT--CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS---------------SC---------------
T ss_pred             eEEeeeec--CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcc---------------ce---------------
Confidence            66777784  488887655 6899999999999876665433211100               00               


Q ss_pred             CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeec
Q 010287          193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                         ...+......+.+++++..++..  ..+.+.+++.........  
T Consensus       158 -----------------------------------~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~--  200 (426)
T d1hzua2         158 -----------------------------------TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV--  200 (426)
T ss_dssp             -----------------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE--
T ss_pred             -----------------------------------eecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee--
Confidence                                               01233445677888998888876  477787887765443221  


Q ss_pred             ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287          271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  350 (513)
Q Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  350 (513)
                           ....+...+..+.|+|++..++++...+..+.+++..+++..    ........+          .......+.+
T Consensus       201 -----~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~  261 (426)
T d1hzua2         201 -----TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS----ALVDVGKTP----------HPGRGANFVH  261 (426)
T ss_dssp             -----EEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE----EEEECSSCC----------CCSCCEEEEE
T ss_pred             -----EEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE----EEeccCCcc----------cccceeeeec
Confidence                 223567789999999999555555566788999999887752    222221111          1122233333


Q ss_pred             cCCE--EEE-Ee-CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE------
Q 010287          351 NGRH--ILS-RD-YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT------  414 (513)
Q Consensus       351 ~~~~--l~~-~~-~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------  414 (513)
                      .+..  .+. .. ++.+.+|+....      .+....+.+|...               +..++|+||+++|++      
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~---------------v~~v~~sPdg~~l~v~~~~~~  326 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSHLYVDTTFNP  326 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC---------------CCCEECCTTCSEEEECCTTCS
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc---------------eeEEEcCCCCceEEEeecCCC
Confidence            3322  111 11 367777776531      2445566666554               348999999999994      


Q ss_pred             -EeCCCcEEEEecCCCCcccee--------ecCCCCceeEEEEcCCCCcee-e----ecCCCeEEE
Q 010287          415 -GSYSNLFRVFGCSEGSAESTT--------LEASKNPMRRQVQTPSRPSRP-L----GSLSGVVRR  466 (513)
Q Consensus       415 -~~~dg~i~vwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~-~----~~~d~~i~~  466 (513)
                       ++.|++|+|||+.+++.....        +..+...+.+++|+|||++++ +    ++.++.|++
T Consensus       327 s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence             556889999999987544322        224556688899999999763 3    356888998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-21  Score=184.19  Aligned_cols=327  Identities=9%  Similarity=-0.066  Sum_probs=210.9

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..+..++|||||++|++++.||.|++||+.+++..                  .........+|.            ..+
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~------------------~~~~i~~~~~~~------------~~~  111 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------------TVAEIKIGSEAR------------SIE  111 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------------EEEEEECCSEEE------------EEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce------------------EEEEEecCCCCC------------CeE
Confidence            47999999999999999999999999998776531                  000111122333            455


Q ss_pred             eeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287          116 NKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (513)
Q Consensus       116 ~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (513)
                      .+..|  ++||++| +++..+++|++||..+++..............    ...........+.++|+|..+        
T Consensus       112 ~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg~~~--------  177 (432)
T d1qksa2         112 TSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE----QEYHPEPRVAAILASHYRPEF--------  177 (432)
T ss_dssp             ECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT----CCEESCCCEEEEEECSSSSEE--------
T ss_pred             Eeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccc----eeccCCCceeEEEECCCCCEE--------
Confidence            66666  4588876 56788999999999999877665443221100    000011111234566776643        


Q ss_pred             CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc
Q 010287          195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV  272 (513)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~  272 (513)
                         .++....+.+.+|+....+...      ...-.+...+.+++|+|++++++++  .++.+.++|..+.+.... ++.
T Consensus       178 ---~vs~~~~~~i~~~d~~~~~~~~------~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~-~~~  247 (432)
T d1qksa2         178 ---IVNVKETGKILLVDYTDLNNLK------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDT  247 (432)
T ss_dssp             ---EEEETTTTEEEEEETTCSSEEE------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EEC
T ss_pred             ---EEEEccCCeEEEEEccCCCcce------EEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE-ecc
Confidence               2344567788888776543211      1112344568899999999988876  588999999986543322 111


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                      .  ....|........+...+ ...++.. .++.|.+|+......                    ..|...+....++|+
T Consensus       248 g--~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~--------------------~~~~~~v~~~~~~~~  304 (432)
T d1qksa2         248 G--GQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGH--------------------PDNAWKILDSFPALG  304 (432)
T ss_dssp             S--SSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTC--------------------TTTBTSEEEEEECSC
T ss_pred             C--ccccccCcccceecCCCC-ceecccccCCceEEecccccccc--------------------cccccEEEEEEEcCC
Confidence            1  112234444455555444 4444443 378899998654321                    223356888999999


Q ss_pred             CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287          352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  430 (513)
                      +..+++++. ...++|+... ...      +....               ..+++ ||++.|++++.|+.+++|++.++ 
T Consensus       305 g~~~~~~s~p~~~~lw~~~~-~~~------~~~~~---------------~sv~v-pDg~~la~~s~d~~~k~w~~~~~-  360 (432)
T d1qksa2         305 GGSLFIKTHPNSQYLYVDAT-LNP------EAEIS---------------GSVAV-FDIKAMTGDGSDPEFKTLPIAEW-  360 (432)
T ss_dssp             SCCCCEECCTTCSEEEEECT-TCS------SHHHH---------------TCEEE-EEGGGCCCSSSCCCEEEECHHHH-
T ss_pred             CCeEEEEecCCccceeeccc-CCC------CCCee---------------eEEEE-EechhhcccccCCceEecccccc-
Confidence            988888764 8899998654 221      22111               14555 89999999999999999998654 


Q ss_pred             ccceeecCCCCceeEEEEcCCCCceeee-----cCCCeEEE
Q 010287          431 AESTTLEASKNPMRRQVQTPSRPSRPLG-----SLSGVVRR  466 (513)
Q Consensus       431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~~  466 (513)
                         ..+..|...+.++.|+|||++++.+     ..++.|+|
T Consensus       361 ---~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i  398 (432)
T d1qksa2         361 ---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV  398 (432)
T ss_dssp             ---HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred             ---cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEE
Confidence               2334566778899999999988544     24688888

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=5.2e-19  Score=158.36  Aligned_cols=256  Identities=9%  Similarity=0.098  Sum_probs=182.7

Q ss_pred             EeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEE
Q 010287           51 ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYL  130 (513)
Q Consensus        51 atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~  130 (513)
                      ++++.|++|.|||+.+++.+                       ..+..             ...+..++|+  +++++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~-----------------------~~i~~-------------g~~p~~va~s--pdG~~l~   47 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVT-----------------------ATIPV-------------GSNPMGAVIS--PDGTKVY   47 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE-----------------------EEEEC-------------SSSEEEEEEC--TTSSEEE
T ss_pred             EEECCCCEEEEEECCCCeEE-----------------------EEEEC-------------CCCceEEEEe--CCCCEEE
Confidence            45678899999998776642                       22221             1447889995  4888775


Q ss_pred             -EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceec
Q 010287          131 -LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRL  209 (513)
Q Consensus       131 -s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  209 (513)
                       +++.++.|++||+.+++......                                                        
T Consensus        48 v~~~~~~~i~v~d~~t~~~~~~~~--------------------------------------------------------   71 (301)
T d1l0qa2          48 VANAHSNDVSIIDTATNNVIATVP--------------------------------------------------------   71 (301)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE--------------------------------------------------------
T ss_pred             EEECCCCEEEEEECCCCceeeeee--------------------------------------------------------
Confidence             55789999999999887544321                                                        


Q ss_pred             eeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEE
Q 010287          210 PVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA  287 (513)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  287 (513)
                                          .+ ..+..++|+++++.++.+  .++.+.+|+..++.....         ..+...+.++
T Consensus        72 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  121 (301)
T d1l0qa2          72 --------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT---------VKTGKSPLGL  121 (301)
T ss_dssp             --------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---------EECSSSEEEE
T ss_pred             --------------------cc-ccccccccccccccccccccccceeeecccccceeeee---------ccccccceEE
Confidence                                11 236789999999877765  588999999986654332         2234567899


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEE
Q 010287          288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKL  365 (513)
Q Consensus       288 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~i  365 (513)
                      .++|++..+++++..++.+.+|+..+...    ...+...             ..+..+.++|++..++++. + +.+.+
T Consensus       122 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         122 ALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECC-------------SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EeecCCCeeeeeeccccceeeeeccccce----eeecccC-------------CCceEEEeeccccceeeeccccccccc
Confidence            99999966667777889999999988764    2222221             3578899999999888765 4 78888


Q ss_pred             EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe---CCCcEEEEecCCCCccceeecCCCCc
Q 010287          366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEASKNP  442 (513)
Q Consensus       366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~  442 (513)
                      |+... .........+...                ..++|+++++.++.+.   .++.|++||+.+++ ....+..+ ..
T Consensus       185 ~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~~~-~~  245 (301)
T d1l0qa2         185 IDTVT-NSVIDTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVG-PD  245 (301)
T ss_dssp             EETTT-TEEEEEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEECC-SS
T ss_pred             ccccc-eeeeecccccCCc----------------ceeeccccccccccccccceeeeeeeeecCCCe-EEEEEcCC-CC
Confidence            88774 4444444433322                3789999999887554   34689999999873 33445444 34


Q ss_pred             eeEEEEcCCCCce-eeecCCCeEEE
Q 010287          443 MRRQVQTPSRPSR-PLGSLSGVVRR  466 (513)
Q Consensus       443 v~~~~~~~~~~~l-~~~~~d~~i~~  466 (513)
                      +..++|+|+|++| ++++.|+.|++
T Consensus       246 ~~~va~spdg~~l~va~~~~~~i~v  270 (301)
T d1l0qa2         246 PAGIAVTPDGKKVYVALSFCNTVSV  270 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEE
Confidence            6799999999976 67888999999

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.2e-20  Score=172.86  Aligned_cols=303  Identities=7%  Similarity=-0.008  Sum_probs=187.7

Q ss_pred             EEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCcccccccccccccceeEE
Q 010287           41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        41 v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      ++|+++++||++++.+++|.|||+.+++.                       ...+. .|.            ..+.+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-----------------------~~t~~~~~~------------~~p~~l~   46 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK------------FGPGTAM   46 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC------------CSSCEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-----------------------EEEEEcCCC------------CCcceEE
Confidence            46899999999999999999999987663                       23332 233            5578999


Q ss_pred             EeecCCCceEEE-eecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287          120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (513)
Q Consensus       120 ~~~~~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  198 (513)
                      |+  +|++++++ ++.++.|.+||+.+++.............         ....+..++++|||+.+.+..........
T Consensus        47 ~s--pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~---------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          47 MA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE---------VGRSMYSFAISPDGKEVYATVNPTQRLND  115 (346)
T ss_dssp             EC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE---------EEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred             EC--CCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc---------cCCceEEEEEecCCCEEEEEecCCcceee
Confidence            95  48877755 46789999999999987665443322110         01223467899999877433211111111


Q ss_pred             cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccc
Q 010287          199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANME  278 (513)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  278 (513)
                      .....+..+.+|+...........     .......+..+.+++++..++++  +.+.+|+..+++....+. .      
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~------  181 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVR-----TFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALP-L------  181 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSE-----EEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEEC-S------
T ss_pred             eeccCcceEEEEecccceeeeEEE-----eeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEe-c------
Confidence            222355667777765544321111     11222345566677777766553  458889987665433221 0      


Q ss_pred             cccCCeEEEEEeCCC-------------------------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287          279 DLTEVITSAEFHPTH-------------------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  333 (513)
Q Consensus       279 ~~~~~i~~~~~~~~~-------------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  333 (513)
                        ......+.++|++                         ...++++..+..+.+||+.++....   .           
T Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------  245 (346)
T d1jmxb_         182 --RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---Q-----------  245 (346)
T ss_dssp             --TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE---E-----------
T ss_pred             --CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE---E-----------
Confidence              0111112222222                         1334444555667777776654321   1           


Q ss_pred             cccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE
Q 010287          334 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA  413 (513)
Q Consensus       334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  413 (513)
                       ....+...+..+.+++++.+++....+.|.+||..+ ++.+..+.....                +.+++|+|||++|+
T Consensus       246 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~va~s~DG~~l~  307 (346)
T d1jmxb_         246 -EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHT----------------YYCVAFDKKGDKLY  307 (346)
T ss_dssp             -EEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECSSSSCEE
T ss_pred             -EeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCC----------------EEEEEEcCCCCEEE
Confidence             122344678889999999888887778999999986 666666543222                24899999999999


Q ss_pred             EEeCCCcEEEEecCCCCccceeecC
Q 010287          414 TGSYSNLFRVFGCSEGSAESTTLEA  438 (513)
Q Consensus       414 ~~~~dg~i~vwd~~~~~~~~~~~~~  438 (513)
                      +++.|+.|++||..+++ .+.+++.
T Consensus       308 v~~~d~~v~v~D~~t~~-~i~~i~~  331 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLE-KVKNIKL  331 (346)
T ss_dssp             EESBSSEEEEEETTTTE-EEEEEEC
T ss_pred             EEeCCCcEEEEECccCC-EEEEEEC
Confidence            99999999999999873 3344443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=3.1e-18  Score=153.22  Aligned_cols=230  Identities=10%  Similarity=0.106  Sum_probs=160.2

Q ss_pred             eEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          235 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       235 v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      +..++|+|+|++|++ + .++.|++||+.+++....        +..+ ..+..+.|++++..+++++..++.+.+|+..
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--------VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee--------eecc-ccccccccccccccccccccccceeeecccc
Confidence            678999999998754 5 589999999997765432        2333 3478999999995667777788899999998


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      +++.    ...+...             ....++.|+|++..++... . +.+.+|+..+ ......+..+...      
T Consensus       105 ~~~~----~~~~~~~-------------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------  160 (301)
T d1l0qa2         105 SNTV----AGTVKTG-------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSVGRSP------  160 (301)
T ss_dssp             TTEE----EEEEECS-------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECCSSE------
T ss_pred             ccee----eeecccc-------------ccceEEEeecCCCeeeeeeccccceeeeeccc-cceeeecccCCCc------
Confidence            7764    2222222             4578899999999887654 3 8899999986 6666665544432      


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCC-CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec---CCCeEEE
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYS-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS---LSGVVRR  466 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~  466 (513)
                                ..+.++|+++.+++++.+ +.+.+|+.... ........+ .....+++++++..++.++   .++.|++
T Consensus       161 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         161 ----------KGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             ----------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             ----------eEEEeeccccceeeecccccccccccccce-eeeeccccc-CCcceeeccccccccccccccceeeeeee
Confidence                      378999999988877755 56667776644 333444333 4456889999999876553   3466777


Q ss_pred             ecCCCCCccccCCccccccCCeeEEEEeCCCCEEE-EEc-CCcEEEEeC
Q 010287          467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNSLYMYYA  513 (513)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la-~~~-~~~~~i~~~  513 (513)
                      .+....   +. ...+.+...+.+++|+|||++|. +++ ++.+.+|..
T Consensus       229 ~D~~t~---~~-~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         229 IDTGTN---KI-TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             EETTTT---EE-EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eecCCC---eE-EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            322211   11 11233456789999999999874 554 678999863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=4.2e-19  Score=161.65  Aligned_cols=249  Identities=9%  Similarity=0.081  Sum_probs=160.9

Q ss_pred             CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCc
Q 010287           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (513)
Q Consensus        48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~  127 (513)
                      +|+++++.|++|.|||+.+.+.                       ...+..+..          ...+.+++|+|  ||+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-----------------------~~~i~~~~~----------~~~~~~i~~sp--Dg~   46 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA----------GPTPMVPMVAP--GGR   46 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC----------TTCCCCEEECT--TSS
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-----------------------EEEEECCCC----------CCCccEEEECC--CCC
Confidence            5899999999999999877653                       223322210          04578999954  887


Q ss_pred             eEE-EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287          128 LYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (513)
Q Consensus       128 ~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (513)
                      +++ +++.++.|.+||+.+++...........                                                
T Consensus        47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~------------------------------------------------   78 (337)
T d1pbyb_          47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPE------------------------------------------------   78 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECCBTT------------------------------------------------
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecCCCc------------------------------------------------
Confidence            775 5577999999999998766543322110                                                


Q ss_pred             eeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-------------cCCeEEEEEcCCCcceeeecccC
Q 010287          207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVK  273 (513)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-------------~d~~i~vwd~~~~~~~~~~~~~~  273 (513)
                                             .+...+..++|+|++++++++             .+..+.+||..+......     
T Consensus        79 -----------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----  130 (337)
T d1pbyb_          79 -----------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA-----  130 (337)
T ss_dssp             -----------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE-----
T ss_pred             -----------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe-----
Confidence                                   111224467788888877765             246788888886554322     


Q ss_pred             ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc---------------ee---------------
Q 010287          274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS---------------KL---------------  323 (513)
Q Consensus       274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------~~---------------  323 (513)
                         + .+...+..++|+|++ +++++++.  .+.+||..+++......               ..               
T Consensus       131 ---~-~~~~~~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (337)
T d1pbyb_         131 ---F-EAPRQITMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY  203 (337)
T ss_dssp             ---E-ECCSSCCCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred             ---c-cccCCceEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeee
Confidence               1 234557889999999 77777754  46789987754321100               00               


Q ss_pred             --------------------eccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccc
Q 010287          324 --------------------FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       324 --------------------~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                                          ++..........+..+...+..+.++|++.+++.++ +.+++||+.+ ++.+..+.....
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~  281 (337)
T d1pbyb_         204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEK-NASIKRVPLPHS  281 (337)
T ss_dssp             EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTT-TEEEEEEECSSC
T ss_pred             eeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCC-CcEEEEEcCCCC
Confidence                                000000000001122344556667777777776654 7999999996 776766643322


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                                      +.+++|+|||++|++++.|+.|++||..+.+..
T Consensus       282 ----------------~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         282 ----------------YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ----------------CCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             ----------------EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence                            238999999999999999999999999987433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.6e-17  Score=153.57  Aligned_cols=324  Identities=6%  Similarity=-0.043  Sum_probs=196.7

Q ss_pred             cccccEEEEEEcCCCCEEEeec-----CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287           33 QEVDIISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (513)
Q Consensus        33 ~h~~~V~~v~~sp~g~~latg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  107 (513)
                      .+..++.+++++|||+.++...     ..+.|.+||..+++.+                       ..+..+.       
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-----------------------~~~~~~~-------   67 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF-------   67 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-----------------------EEEeCCC-------
Confidence            4678999999999999887642     3457999997776642                       3344443       


Q ss_pred             cccccccceeEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287          108 SLEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (513)
Q Consensus       108 ~~~~~~~i~~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (513)
                             ...++|+|  ||++++++.          .++.|.+||..+++..............        ....+..+
T Consensus        68 -------~~~~a~Sp--DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~--------~~~~~~~~  130 (373)
T d2madh_          68 -------LPNPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--------VGPYSWMN  130 (373)
T ss_pred             -------CccEEEcC--CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE--------eccCCCcE
Confidence                   33688955  888988874          4678999999998876654433222110        11122356


Q ss_pred             eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-E-cCCeE
Q 010287          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRI  255 (513)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i  255 (513)
                      .++++++.+.+          +.......+.+|+......           ..+.....++.++|+++.++. . .|+.+
T Consensus       131 ~~s~dg~~~~v----------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~  189 (373)
T d2madh_         131 ANTPNNADLLF----------FQFAAGPAVGLVVQGGSSD-----------DQLLSSPTCYHIHPGAPSTFYLLCAQGGL  189 (373)
T ss_pred             EEEeCCCcEEE----------EEEcCCCceEEeeccCCeE-----------EEEeccceeEEEecCCCcEEEEEcCCCeE
Confidence            78888886522          2223344555555543221           233344678899999887654 4 69999


Q ss_pred             EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      .+|+.............  ............+.+.+++  .++..+.++.+.+|+........  ...+.........  
T Consensus       190 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--  261 (373)
T d2madh_         190 AKTDHAGGAAGAGLVGA--MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--  261 (373)
T ss_pred             EEEEcCCceeeEEEeee--ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEE--EEeeccccCcEEe--
Confidence            99998865543321100  0011122223445556654  56667789999999987765321  1111111100000  


Q ss_pred             cccccccEEEEEEeecCCEEE----------EEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287          336 FTEIIASISDIKFARNGRHIL----------SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC  404 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~~l~----------~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  404 (513)
                      ..........++++|++..++          +.. .+.+.+||..+ ++.+..+.....                +..++
T Consensus       262 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~----------------~~~~a  324 (373)
T d2madh_         262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHD----------------VDAIS  324 (373)
T ss_pred             eeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCC----------------eeEEE
Confidence            000112334556666665544          223 37899999986 777766653332                23799


Q ss_pred             EeCCCCE--EEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287          405 LSGDGGR--VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP  450 (513)
Q Consensus       405 ~s~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  450 (513)
                      |+|||+.  +++++.|+.|++||+.++ +++..+..+......+++..
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECCCCCCCcEEEEec
Confidence            9999984  467889999999999998 55577777766666666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=9.5e-19  Score=159.31  Aligned_cols=251  Identities=12%  Similarity=0.071  Sum_probs=158.6

Q ss_pred             CeEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe----------
Q 010287          234 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------  301 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------  301 (513)
                      .+.+++|+|||++++ ++ .++.|.+||+.+++....+. .  .....+...+..++|+|++ +.++++.          
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~-~--~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-L--STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-C--CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-c--CCCcccccceeeEEEcCCC-cEEEEeecCCcceeeec
Confidence            366799999999875 45 58999999999876544321 0  0112223445679999999 6666665          


Q ss_pred             --CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeee
Q 010287          302 --SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       302 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~  379 (513)
                        .+..+.+||..++..    ...+...             ..+..++|+|+|+++++++ +.+.+||..+ ++....+.
T Consensus       111 ~~~~~~~~~~d~~~~~~----~~~~~~~-------------~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~-~~~~~~~~  171 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSR----RKAFEAP-------------RQITMLAWARDGSKLYGLG-RDLHVMDPEA-GTLVEDKP  171 (337)
T ss_dssp             EECCCEEEEEETTTTEE----EEEEECC-------------SSCCCEEECTTSSCEEEES-SSEEEEETTT-TEEEEEEC
T ss_pred             cccccceeeccccCCeE----EEecccc-------------CCceEEEEcCCCCEEEEEc-CCcceeeeec-CcEEEEee
Confidence              356788888887664    2222222             3577899999999999876 4578899886 66665554


Q ss_pred             cccccccccccc-----cccCCc---cceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          380 VHEHLRPKLCDL-----YENDSI---FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       380 ~~~~~~~~~~~~-----~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      .+..........     ......   ..........+......+..++.+.+|+..++.........+......+.++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T d1pbyb_         172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence            443221110000     000000   000011112222333334445679999999885555566677778888999999


Q ss_pred             CCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287          452 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA  513 (513)
Q Consensus       452 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~  513 (513)
                      +.+++.+  ++.+++   ++..... ......+...+.+++|+|||++|++++ ++.+.+|++
T Consensus       252 ~~~~~~~--~~~i~v---~d~~~~~-~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         252 KTRAFGA--YNVLES---FDLEKNA-SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SSEEEEE--ESEEEE---EETTTTE-EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             ceEEEEc--cccEEE---EECCCCc-EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            9998776  577887   2222111 112234567899999999999999876 677889874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=9.3e-19  Score=160.00  Aligned_cols=291  Identities=10%  Similarity=0.086  Sum_probs=181.8

Q ss_pred             cCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCC
Q 010287          123 SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG  202 (513)
Q Consensus       123 ~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  202 (513)
                      +++++++++++.|++|.+||+.++++.....+                                                
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~------------------------------------------------   36 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------------------------------------------------   36 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------------------------------------------------
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc------------------------------------------------
Confidence            45788999999999999999999886654332                                                


Q ss_pred             CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccc
Q 010287          203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL  280 (513)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  280 (513)
                                                 .|...+.+++|+|||++++++  .++.|.+||+.+++....+...  .....+
T Consensus        37 ---------------------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~--~~~~~~   87 (346)
T d1jmxb_          37 ---------------------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS--SVPGEV   87 (346)
T ss_dssp             ---------------------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC--CSTTEE
T ss_pred             ---------------------------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc--cccccc
Confidence                                       222346789999999987654  5899999999977654332100  011222


Q ss_pred             cCCeEEEEEeCCCCeEEEEEe------------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287          281 TEVITSAEFHPTHCNMLAYSS------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  348 (513)
Q Consensus       281 ~~~i~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  348 (513)
                      ...+..++|+||+ +++++++            .+..+.+||..++.....    +.....          ...+..+.+
T Consensus        88 ~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~~  152 (346)
T d1jmxb_          88 GRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRTFPM----------PRQVYLMRA  152 (346)
T ss_dssp             EECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC----SEEEEC----------CSSCCCEEE
T ss_pred             CCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceeeeE----EEeeec----------cCceEEEEe
Confidence            3346689999999 6665554            477888999887664221    111111          123555667


Q ss_pred             eecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccc-----cccc----CCcc-ceeeEEEeCCCCEEEEEeCC
Q 010287          349 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD-----LYEN----DSIF-DKFECCLSGDGGRVATGSYS  418 (513)
Q Consensus       349 sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~-~v~~~~~s~~~~~l~~~~~d  418 (513)
                      ++++.+++++  +.+.+|++.+ ++.+..+..+.........     ++..    ..+. ......+.+....++++..+
T Consensus       153 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
T d1jmxb_         153 ADDGSLYVAG--PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  229 (346)
T ss_dssp             CTTSCEEEES--SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             cCCCEEEEeC--CcceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence            7777766654  4588999886 6777666554432111000     0000    0000 00111222334445566667


Q ss_pred             CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287          419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN  498 (513)
Q Consensus       419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~  498 (513)
                      +.+.+|++.++.........+...+....+++++.+++.... +.+++.   +....+. .....+...+.+++|||||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~---d~~~~~~-~~~~~~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKY---DLKQRKL-IKAANLDHTYYCVAFDKKGD  304 (346)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEE---ETTTTEE-EEEEECSSCCCEEEECSSSS
T ss_pred             ceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEE---ECCCCcE-EEEEcCCCCEEEEEEcCCCC
Confidence            789999999886555667778888889999999999888764 456662   2111011 11223456799999999999


Q ss_pred             EEEEEc-CCcEEEEeC
Q 010287          499 SIACAA-SNSLYMYYA  513 (513)
Q Consensus       499 ~la~~~-~~~~~i~~~  513 (513)
                      +|++++ ++.+.+|++
T Consensus       305 ~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             CEEEESBSSEEEEEET
T ss_pred             EEEEEeCCCcEEEEEC
Confidence            999877 778888874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.6e-16  Score=144.18  Aligned_cols=288  Identities=10%  Similarity=0.083  Sum_probs=177.1

Q ss_pred             EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCce
Q 010287           49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL  128 (513)
Q Consensus        49 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~  128 (513)
                      .+++++.|++|+||++......                    .... ...|.            +.+..|+|+|  ||++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l--------------------~~~~-~~~~~------------~~v~~la~sp--DG~~   50 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL--------------------TLTQ-VVDVP------------GQVQPMVVSP--DKRY   50 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE--------------------EEEE-EEECS------------SCCCCEEECT--TSSE
T ss_pred             EEEECCCCCcEEEEEEcCCCCe--------------------EEEE-EEcCC------------CCEeEEEEeC--CCCE
Confidence            3567788999999998654321                    0111 12233            7799999955  8888


Q ss_pred             EEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCce
Q 010287          129 YLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (513)
Q Consensus       129 l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  207 (513)
                      |++++ .|+.|++|++...........                                                     
T Consensus        51 L~v~~~~d~~i~~~~i~~~~~~~~~~~-----------------------------------------------------   77 (333)
T d1ri6a_          51 LYVGVRPEFRVLAYRIAPDDGALTFAA-----------------------------------------------------   77 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEE-----------------------------------------------------
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEee-----------------------------------------------------
Confidence            86654 589999999976532211100                                                     


Q ss_pred             eceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeE
Q 010287          208 RLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  285 (513)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  285 (513)
                                          ...+...+..++|+|||++|+++  .++.+.+|+..........      ....+...+.
T Consensus        78 --------------------~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~~~  131 (333)
T d1ri6a_          78 --------------------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------DVVEGLDGCH  131 (333)
T ss_dssp             --------------------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE------EEECCCTTBC
T ss_pred             --------------------ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc------cccCCCccce
Confidence                                01222346689999999999987  4889999988754433221      2344566788


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeE
Q 010287          286 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTL  363 (513)
Q Consensus       286 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v  363 (513)
                      ++.++|++...+.....+..|.+|+...............          ..........++|++++.+++... . +..
T Consensus       132 ~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~  201 (333)
T d1ri6a_         132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----------TTVEGAGPRHMVFHPNEQYAYCVNELNSSV  201 (333)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----------ECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEeeecceeeeccccccceeeEEEeccCCcceeeeceee----------eeecCCCccEEEEeccceeEEeeccccCce
Confidence            9999999944444444567899999876543211000000          011124568899999999888754 3 788


Q ss_pred             EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccce--eecCCC
Q 010287          364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAEST--TLEASK  440 (513)
Q Consensus       364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~--~~~~~~  440 (513)
                      .+|+.......+............      .........+++++++++++.. ..++.+.+|++........  ......
T Consensus       202 ~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (333)
T d1ri6a_         202 DVWELKDPHGNIECVQTLDMMPEN------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE  275 (333)
T ss_dssp             EEEESSCTTSCCEEEEEEECSCTT------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred             EEEeecccccceeeeeeeeeeecC------CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCC
Confidence            888876423222211110000000      0001113368899999977655 4678899999876544322  122334


Q ss_pred             CceeEEEEcCCCCceeee-cCCCeEEE
Q 010287          441 NPMRRQVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       441 ~~v~~~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      ..+..++|+|+|++|+++ +.++.|++
T Consensus       276 ~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         276 TQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             CCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            456789999999987665 45688888

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.1e-16  Score=145.37  Aligned_cols=286  Identities=11%  Similarity=0.101  Sum_probs=177.7

Q ss_pred             cccccccccceeccccccccccccccEEEEEEcCCCCEEEe-ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (513)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat-g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (513)
                      ..-..|++..- +.........|.+.|..++|||||++|++ +..|+.|++|++......                   .
T Consensus        14 ~~I~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-------------------~   73 (333)
T d1ri6a_          14 QQIHVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-------------------L   73 (333)
T ss_dssp             TEEEEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-------------------E
T ss_pred             CcEEEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-------------------E
Confidence            34456877541 22233345678899999999999999855 456899999998765431                   0


Q ss_pred             eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (513)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      ..... ..+.            ..+..++|+  +|++++++++. ++.+.+|+...........                
T Consensus        74 ~~~~~-~~~~------------~~p~~l~~s--pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~----------------  122 (333)
T d1ri6a_          74 TFAAE-SALP------------GSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD----------------  122 (333)
T ss_dssp             EEEEE-EECS------------SCCSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEE----------------
T ss_pred             EEeee-cccC------------CCceEEEEc--CCCCEEeecccCCCceeeeccccccceeccc----------------
Confidence            01111 1111            457789994  58889988864 7789999987665333211                


Q ss_pred             CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  249 (513)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  249 (513)
                                                                                ...+...+.++.++|++++++.
T Consensus       123 ----------------------------------------------------------~~~~~~~~~~v~~s~d~~~~~~  144 (333)
T d1ri6a_         123 ----------------------------------------------------------VVEGLDGCHSANISPDNRTLWV  144 (333)
T ss_dssp             ----------------------------------------------------------EECCCTTBCCCEECTTSSEEEE
T ss_pred             ----------------------------------------------------------ccCCCccceEEEeeecceeeec
Confidence                                                                      1233345678899999999888


Q ss_pred             E--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287          250 A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  327 (513)
Q Consensus       250 ~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  327 (513)
                      +  .+..|.+|+.............  ............++|++++...+.+....+...+|+.................
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         145 PALKQDRICLFTVSDDGHLVAQDPA--EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE--EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             cccccceeeEEEeccCCcceeeece--eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            7  4788999998765433221100  01122345678999999984445555667788888865433221111111110


Q ss_pred             cCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287          328 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL  405 (513)
Q Consensus       328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  405 (513)
                      ..      ..........+++++++++++... . +.+.+|++........ ...+.....         .   ...++|
T Consensus       223 ~~------~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~---p~~~a~  283 (333)
T d1ri6a_         223 PE------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS-KEGFQPTET---------Q---PRGFNV  283 (333)
T ss_dssp             CT------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE-EEEEEECSS---------S---CCCEEE
T ss_pred             ec------CCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE-EEEEeCCCC---------C---eeEEEE
Confidence            00      011224567789999999888754 3 8999999986333332 222211100         0   237899


Q ss_pred             eCCCCEEEEEe-CCCcEEEEecC
Q 010287          406 SGDGGRVATGS-YSNLFRVFGCS  427 (513)
Q Consensus       406 s~~~~~l~~~~-~dg~i~vwd~~  427 (513)
                      +|||++|++++ .++.|++|++.
T Consensus       284 spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         284 DHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEEE
Confidence            99999987665 56899999553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1e-17  Score=153.76  Aligned_cols=319  Identities=8%  Similarity=-0.006  Sum_probs=188.7

Q ss_pred             cEEEEEEcCCCCEEEeec-----CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287           37 IISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  111 (513)
                      ++...+.+|||+.+++..     .++.|.+||..+++.+                       ..+..+.           
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~-----------------------~~~~~g~-----------   48 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF-----------   48 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS-----------
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE-----------------------EEEECCC-----------
Confidence            334446689999887653     4557999998776532                       2233332           


Q ss_pred             cccceeEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceecc
Q 010287          112 EEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (513)
Q Consensus       112 ~~~i~~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (513)
                         +..++|+|  |+++|++++          .|+.|++||..+++...............        ...+..+++++
T Consensus        49 ---~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~  115 (355)
T d2bbkh_          49 ---LPNPVVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--------GTYPWMTSLTP  115 (355)
T ss_dssp             ---SCEEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB--------SCCGGGEEECT
T ss_pred             ---CCceEEcC--CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec--------CCCCceEEEec
Confidence               45789954  888887653          47899999999988766554433221111        12233678999


Q ss_pred             CCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEE
Q 010287          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN  259 (513)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd  259 (513)
                      +|+.+.+          ........+.+|+....+.....................+.++++++.++..  .++.+.+++
T Consensus       116 dg~~~~v----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         116 DGKTLLF----------YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             TSSEEEE----------EECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             CCCeeEE----------ecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            9987622          2334556677777765443211110000000011223456677777776665  356666666


Q ss_pred             cCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287          260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  339 (513)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (513)
                      ......             .+...+....+.+++ ..++.++.++.+.+|++..+.....  .....+...  .......
T Consensus       186 ~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~--~~~~~~~  247 (355)
T d2bbkh_         186 TEVFHP-------------EDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEA--ERADGWR  247 (355)
T ss_dssp             CCCCSC-------------TTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHH--HHHTTEE
T ss_pred             cccccc-------------eecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCcccc--eEeeeee
Confidence            543321             123334455677776 7888889999999999987653211  111110000  0000001


Q ss_pred             cccEEEEEEeecCCEEEEEeC-----------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287          340 IASISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD  408 (513)
Q Consensus       340 ~~~v~~i~~sp~~~~l~~~~~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  408 (513)
                      ......+++++++..++....           ..|.+||..+ ++.+..+.....                +.+++|+||
T Consensus       248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~----------------~~~~a~spD  310 (355)
T d2bbkh_         248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE----------------IDSINVSQD  310 (355)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE----------------ECEEEECCS
T ss_pred             ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCC----------------EEEEEEcCC
Confidence            123345889999988876321           4799999996 777776654332                238999999


Q ss_pred             CC--EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE
Q 010287          409 GG--RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ  448 (513)
Q Consensus       409 ~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  448 (513)
                      |+  ++++++.|+.|++||++++ +.+.++..+......+.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTC-CEEEEECCCCSSCCEEEC
T ss_pred             CCeEEEEEECCCCEEEEEECCCC-CEEEEEeCcCCCccEEEe
Confidence            98  3456778999999999988 444666655443334433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=1.4e-15  Score=140.33  Aligned_cols=330  Identities=8%  Similarity=-0.069  Sum_probs=193.3

Q ss_pred             ccceeEEEeecCCCceEEEe-----ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          113 EKINKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       113 ~~i~~i~~~~~~~~~~l~s~-----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      .++..++++|  ++..+++.     +.++.|.+||..+++..........                 ..++|+|||+.+.
T Consensus        21 ~p~~~~a~sp--dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~-----------------~~~a~SpDG~~l~   81 (373)
T d2madh_          21 GPTNDEAPGA--DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-----------------PNPVAAHSGSEFA   81 (373)
T ss_pred             CCccccccCC--CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC-----------------ccEEEcCCCCEEE
Confidence            7789999955  77787664     2346799999999887765443221                 1579999999873


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCc
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISN  264 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~  264 (513)
                      ...  ........+..++.+.+||....+..............-......+.|+++++.++..   .++.+.+|+....+
T Consensus        82 va~--~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~  159 (373)
T d2madh_          82 LAS--TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS  159 (373)
T ss_pred             EEe--ecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe
Confidence            321  1112223345678899999987654322110000000001112457888888877654   36778888877543


Q ss_pred             ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287          265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  344 (513)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  344 (513)
                      .            ..+.....++.++|++...+++.+.|+.+.+||...+............          .+......
T Consensus       160 ~------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  217 (373)
T d2madh_         160 D------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT----------AAQNLLTQ  217 (373)
T ss_pred             E------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc----------cCccceee
Confidence            2            2234456789999999677789999999999998877653221111111          11112344


Q ss_pred             EEEEeecCCEEEEEeCCeEEEEEccCCCCCeeee--ecccccccccccccccCCccceeeEEEeCCCCEE----------
Q 010287          345 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV----------  412 (513)
Q Consensus       345 ~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----------  412 (513)
                      .+.+++++.+++.+.++.+.+|+... .......  ...........  ....   ....+++++++..+          
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         218 PAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKADT--WRPG---GWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             eEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEeee--eccC---cceeeEEecCCCeEEEecCCCceE
Confidence            55666777777666678999999875 3322111  11111000000  0000   01245666666544          


Q ss_pred             EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc--eeeecCCCeEEEecCCCCCccccCCccccccCCeeE
Q 010287          413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLH  490 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  490 (513)
                      ++...++.+.+||..+++.. ..+. +...+..++|+|||+.  +++++.|+.|++   ++....+.......+....+.
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~-~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v---~D~~tg~~~~~~~~~g~~P~~  366 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTS-SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHI---YDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EeecCCCeEEEEECCCCcEE-EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEE---EECCCCCEEEEECCCCCCCcE
Confidence            45556778999999988433 3443 4556789999999984  478899999999   333321222222234555566


Q ss_pred             EEEeCC
Q 010287          491 LAWHPS  496 (513)
Q Consensus       491 ~~~sp~  496 (513)
                      ++..++
T Consensus       367 l~~~~~  372 (373)
T d2madh_         367 LSVMNE  372 (373)
T ss_pred             EEEecC
Confidence            655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1e-14  Score=133.31  Aligned_cols=295  Identities=7%  Similarity=-0.074  Sum_probs=164.6

Q ss_pred             cCCCceEEEe-----ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287          123 SANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (513)
Q Consensus       123 ~~~~~~l~s~-----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (513)
                      ++|+..+++.     ..+..|.+||..+++..........                 ..++|+|||+.+.+....  ...
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~-----------------~~~a~SpDg~~l~v~~~~--~~~   70 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-----------------PNPVVADDGSFIAHASTV--FSR   70 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-----------------CEEEECTTSSCEEEEEEE--EEE
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC-----------------CceEEcCCCCEEEEEeCC--Ccc
Confidence            4577787765     3466899999999987665443221                 157999999976221100  000


Q ss_pred             CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCc
Q 010287          198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP  274 (513)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~  274 (513)
                      ...+..++.|.+||....+.....................++|+++++.++.+   .+..+.+|+..+++....+. ...
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~  149 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPD  149 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS
T ss_pred             ccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCC
Confidence            01123467899999877654321110000001112234568999999988875   37889999998765433221 000


Q ss_pred             cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE
Q 010287          275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  354 (513)
Q Consensus       275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  354 (513)
                      .....-......+.+++++..+++....++.+.+++......                     .+...+....+++++..
T Consensus       150 ~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---------------------EDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC---------------------TTSCBCSCCEEETTTTE
T ss_pred             cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc---------------------eecceeeeccccCCCCe
Confidence            000000112234455555533333333444455544433221                     11123445567777777


Q ss_pred             EEEEeC-CeEEEEEccCCCCCe--eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC----------CcE
Q 010287          355 ILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----------NLF  421 (513)
Q Consensus       355 l~~~~~-~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i  421 (513)
                      ++.++. +.+++|++.. +...  .....+.......  .....   ....+++++++..++....+          +.|
T Consensus       209 ~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~p~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v  282 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAERAD--GWRPG---GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  282 (355)
T ss_dssp             EEEEBTTSEEEEEECTT-SSCEECCCEESSCHHHHHT--TEEEC---SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             EEEecCCCeEEEEecCC-CcEEEEeccCCcccceEee--eeecc---ceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence            777665 9999999985 3322  1111111110000  00000   11258899999988765543          369


Q ss_pred             EEEecCCCCccceeecCCCCceeEEEEcCCCC--ceeeecCCCeEEE
Q 010287          422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR  466 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~  466 (513)
                      .+||..+++ ....+.. ...+..++|+|+|+  ++++++.|+.|++
T Consensus       283 ~v~d~~t~~-~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v  327 (355)
T d2bbkh_         283 VVLDAKTGE-RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYI  327 (355)
T ss_dssp             EEEETTTCC-EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             EEEeCCCCc-EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEE
Confidence            999999874 3344443 34577999999998  4567788999999

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=5.9e-14  Score=133.50  Aligned_cols=343  Identities=10%  Similarity=0.074  Sum_probs=180.5

Q ss_pred             EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      .+.|.++++++..  .++.|.+||+.+++..                  ...-...+..|.            ..|.++.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~------------------~~~~~~~~~~~~------------~~i~~~~   68 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS------------------VFLENSTFDEFG------------HSINDYS   68 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE------------------EEECTTTTTTSS------------SCCCEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE------------------EEEchhhhhhcc------------CccceeE
Confidence            5779999988875  4678999999887642                  000112345555            7799999


Q ss_pred             EeecCCCceEEEeec---------CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287          120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (513)
Q Consensus       120 ~~~~~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  190 (513)
                      |+|  |+++|+.++.         ++.+.+||+.+++...                                        
T Consensus        69 ~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~----------------------------------------  106 (470)
T d2bgra1          69 ISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----------------------------------------  106 (470)
T ss_dssp             ECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------------------------------------
T ss_pred             ECC--CCCEEEEEECCcceeeeccCceEEEEECCCCcccc----------------------------------------
Confidence            955  8889988754         4567788888776432                                        


Q ss_pred             CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeec
Q 010287          191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV  270 (513)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~  270 (513)
                                                           +..|...+..+.|+|||+.++...++.+++|+..++.......
T Consensus       107 -------------------------------------l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1         107 -------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             -------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCS
T ss_pred             -------------------------------------cccCCccccccccccCcceeeEeecccceEEECCCCceeeeee
Confidence                                                 1345566888999999999999988999999988665432211


Q ss_pred             ccCcc-cc---------ccccCCeEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCcc---cccc-----------------
Q 010287          271 DVKPA-NM---------EDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSA---LCDT-----------------  319 (513)
Q Consensus       271 ~~~~~-~~---------~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~---~~~~-----------------  319 (513)
                      ...+. .+         .........+.|+||| +.|+....|.. +..|++....   ....                 
T Consensus       150 ~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  228 (470)
T d2bgra1         150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (470)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             ccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcc
Confidence            11000 00         1122344668899999 77877766533 5544432110   0000                 


Q ss_pred             cceeeccccCCCCc----------cccccccccEEEEEEeecCCEEEEE-e---C-CeEEEEEccCCCCCeeeeec-ccc
Q 010287          320 HSKLFEEQEAPGTR----------SFFTEIIASISDIKFARNGRHILSR-D---Y-MTLKLWDINMDSGPVATFQV-HEH  383 (513)
Q Consensus       320 ~~~~~~~~~~~~~~----------~~~~~~~~~v~~i~~sp~~~~l~~~-~---~-~~v~iwd~~~~~~~~~~~~~-~~~  383 (513)
                      .+..++........          .........+..+.|.+++..++.. .   + ..+.++++.........+.. ...
T Consensus       229 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~  308 (470)
T d2bgra1         229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI  308 (470)
T ss_dssp             EEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred             eEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeee
Confidence            00111110000000          0011122356778899988866653 2   1 34556655431111111110 000


Q ss_pred             --cccccccccccCCccceeeEEEeCCCC--EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCce-eee
Q 010287          384 --LRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLG  458 (513)
Q Consensus       384 --~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~  458 (513)
                        ........+..      ....+.+++.  +++.+..||..+||...........+......|..+ ++++++.+ .++
T Consensus       309 ~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a  381 (470)
T d2bgra1         309 EMSTTGWVGRFRP------SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYIS  381 (470)
T ss_dssp             EECSSSCSSSSSC------CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEE
T ss_pred             eeeccceeecccC------CCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEE
Confidence              00000000000      1234454443  455666777666664433334444444445556555 33344433 233


Q ss_pred             cC-CC-----eEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEE
Q 010287          459 SL-SG-----VVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIA  501 (513)
Q Consensus       459 ~~-d~-----~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la  501 (513)
                      .. +.     .+..+..+..... .+......|...+.+++|||||++++
T Consensus       382 ~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         382 NEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             SCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             ecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence            22 22     1222221211111 12233445778899999999999987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.54  E-value=1.1e-13  Score=125.85  Aligned_cols=234  Identities=12%  Similarity=0.065  Sum_probs=138.3

Q ss_pred             ccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE--
Q 010287          231 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI--  306 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i--  306 (513)
                      |.........+|||++|+..  .+++|.++|+++.+... ++     . ..+...+..+.|+|++...++++..+..+  
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~-ii-----~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK-IT-----H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-EE-----E-CTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee-EE-----e-cCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            33445566678999999876  59999999999765432 11     1 12456789999999984434444444333  


Q ss_pred             ----------------EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeE-----
Q 010287          307 ----------------RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTL-----  363 (513)
Q Consensus       307 ----------------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v-----  363 (513)
                                      ..+|..+.+...    ....             .+....+.++|+|+++++.+.  ..+     
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~----qI~v-------------~~~p~~v~~spdGk~a~vt~~nse~~~~id~  205 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAW----QVIV-------------DGNLDNTDADYTGKYATSTCYNSERAVDLAG  205 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEE----EEEE-------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             cCcccccccccccceEEeecCccceeeE----EEec-------------CCCccceEECCCCCEEEEEecCCCceEEEec
Confidence                            335554433211    1111             134567889999998887542  222     


Q ss_pred             ---------EEEEccC-------------------------CCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287          364 ---------KLWDINM-------------------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  409 (513)
Q Consensus       364 ---------~iwd~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  409 (513)
                               .+.+...                         ....+..++....                -..+.++|||
T Consensus       206 ~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks----------------PhGv~vSPDG  269 (441)
T d1qnia2         206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN----------------PHGLNTSPDG  269 (441)
T ss_dssp             HTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS----------------CCCEEECTTS
T ss_pred             cCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC----------------ccCceECCCC
Confidence                     2222110                         0122222222111                1368999999


Q ss_pred             CEEE-EEeCCCcEEEEecCCCCccc-------eeecCCC---CceeEEEEcCCCCceeeecCCCeEEE---------ecC
Q 010287          410 GRVA-TGSYSNLFRVFGCSEGSAES-------TTLEASK---NPMRRQVQTPSRPSRPLGSLSGVVRR---------VKG  469 (513)
Q Consensus       410 ~~l~-~~~~dg~i~vwd~~~~~~~~-------~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~---------~~~  469 (513)
                      ++++ ++..+++|.+||+++..+..       ..+.+..   -......|.++|..+.+.+.|..|..         ..+
T Consensus       270 kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~  349 (441)
T d1qnia2         270 KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNG  349 (441)
T ss_dssp             CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTT
T ss_pred             CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhcc
Confidence            9876 56689999999987532110       1111111   11234588999988899999988877         111


Q ss_pred             CCCCcc--c-cCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          470 ADNSAL--D-ANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       470 ~~~~~~--~-~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ......  . -...+.+|...+.+.+++|||++|++++
T Consensus       350 ~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         350 DRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             CCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            111100  0 0112357888888899999999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=2.7e-12  Score=117.56  Aligned_cols=264  Identities=9%  Similarity=0.003  Sum_probs=146.5

Q ss_pred             eeEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287          116 NKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  185 (513)
                      ..++|+  +|++.+++++          .|+.|++||..+++.......+......        ....+..++++|||+.
T Consensus        68 ~~~a~s--pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~--------~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          68 SLAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--------VGPRVHIIGNCASSAC  137 (368)
T ss_dssp             CEEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--------BSCCTTSEEECTTSSC
T ss_pred             CcceEC--CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec--------ccCCccceEECCCCCE
Confidence            457884  4787887754          4788999999998876655443221110        0122336789999998


Q ss_pred             cccccCCCCCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCC
Q 010287          186 GERNFGCASNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEI  262 (513)
Q Consensus       186 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~  262 (513)
                      +            +.. ...+.+.+||+...+.....       ..+...    .+.+. ...++.. .||.+.++++..
T Consensus       138 l------------~va~~~~~~v~~~d~~~~~~~~~~-------~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         138 L------------LFFLFGSSAAAGLSVPGASDDQLT-------KSASCF----HIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             E------------EEEECSSSCEEEEEETTTEEEEEE-------ECSSCC----CCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             E------------EEEeCCCCeEEEEECCCCcEeEEe-------eccCcc----eEccCCCceEEEEcCCCCEEEEEecC
Confidence            7            333 34678999998775432111       111111    11222 2233333 577777777664


Q ss_pred             CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287          263 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  342 (513)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (513)
                      ..........  .....+...+....+.+++ ..+.  ..++.+.+++...+....  .............  .......
T Consensus       195 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~g  265 (368)
T d1mdah_         195 APAAAGIVGA--QCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATM--KAAIDGNESGRKA--DNFRSAG  265 (368)
T ss_dssp             SCCCCEECCC--CSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEE--ECCCCSSCTHHHH--TTEEECS
T ss_pred             Cceeeeeeec--ccccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEE--Eeecccccceeee--eeecCCC
Confidence            4432221100  1223344455567778877 5544  345667777766544311  0011110000000  0001122


Q ss_pred             EEEEEEeecCCEEEEEe--C--------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE-
Q 010287          343 ISDIKFARNGRHILSRD--Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-  411 (513)
Q Consensus       343 v~~i~~sp~~~~l~~~~--~--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-  411 (513)
                      ...++++|++..++...  +        ..|.+||..+ ++.+..+.....                +..++|+|||+. 
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~----------------~~~~a~spDG~~~  328 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHD----------------SDAIIAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEE----------------ECEEEECCSSSCE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCc----------------eeEEEECCCCCEE
Confidence            34578899888776531  1        3689999987 777766654322                237999999973 


Q ss_pred             -EEEEeCCCcEEEEecCCCCccceeecCC
Q 010287          412 -VATGSYSNLFRVFGCSEGSAESTTLEAS  439 (513)
Q Consensus       412 -l~~~~~dg~i~vwd~~~~~~~~~~~~~~  439 (513)
                       ++++..|+.|++||..+++ .+..++..
T Consensus       329 ly~s~~~~~~v~v~D~~tgk-~~~~i~~g  356 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQ-DQSSVELD  356 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCE-EEEECCCC
T ss_pred             EEEEeCCCCeEEEEECCCCC-EEEEEECC
Confidence             4566788999999999884 44455443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=9.5e-12  Score=113.04  Aligned_cols=120  Identities=10%  Similarity=0.089  Sum_probs=76.1

Q ss_pred             cEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287          342 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN  419 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  419 (513)
                      ....+.++|||+++++++ . ++|.+||+.+ .  ...+.........+  ..+...-......+|+++|..+.+...|.
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k-~--~~~~~~~~~~~~~~--~~~~~~glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK-L--DDLFEDKIELRDTI--VAEPELGLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGG-H--HHHTTTSSCGGGGE--EECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeeh-h--hhHhhccCCcceEE--EeecccccCcccceecCCceEEEcccccc
Confidence            357799999999988755 3 9999999874 1  11111111110000  00001111123568999998888889999


Q ss_pred             cEEEEecCCC---------Cccceee-----cCCCCceeEEEEcCCCCceeee---cCCCeEEE
Q 010287          420 LFRVFGCSEG---------SAESTTL-----EASKNPMRRQVQTPSRPSRPLG---SLSGVVRR  466 (513)
Q Consensus       420 ~i~vwd~~~~---------~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~  466 (513)
                      .|..|++...         ......+     .+|...+...+++|+|+||+++   +.|+.+-+
T Consensus       334 ~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~  397 (441)
T d1qnia2         334 QVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPV  397 (441)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCC
T ss_pred             eEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCC
Confidence            9999997521         1122333     4666677777889999999999   66766655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=4.5e-12  Score=120.23  Aligned_cols=84  Identities=5%  Similarity=-0.018  Sum_probs=64.8

Q ss_pred             ccccccccEEEEEEcCCCCEEEeecC---------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCC
Q 010287           30 EEVQEVDIISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE  100 (513)
Q Consensus        30 ~~~~h~~~V~~v~~sp~g~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  100 (513)
                      ....|...|.++.|||||++||.++.         ++.+.|||+.+++.                        ..+..|.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~------------------------~~l~~~~  111 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL------------------------ITEERIP  111 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE------------------------CCSSCCC
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc------------------------cccccCC
Confidence            34556788999999999999998753         56789999887764                        2355565


Q ss_pred             CcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeee
Q 010287          101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF  152 (513)
Q Consensus       101 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~  152 (513)
                                  +.+..+.|+|  ||+.++.. .++.+.+|+..+++.....
T Consensus       112 ------------~~~~~~~~SP--DG~~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1         112 ------------NNTQWVTWSP--VGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             ------------TTEEEEEECS--STTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             ------------cccccccccc--CcceeeEe-ecccceEEECCCCceeeee
Confidence                        7789999955  88888884 5778999999988755543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=5.9e-11  Score=108.44  Aligned_cols=265  Identities=10%  Similarity=0.048  Sum_probs=143.9

Q ss_pred             EEEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287           39 SAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (513)
Q Consensus        39 ~~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  108 (513)
                      ..++|+|||++|++++          .|+.|.+||..+.+.+                       ..+..+...     .
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-----------------------~~i~~p~~~-----~  119 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAP-----R  119 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSC-----S
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-----------------------eeecCCccc-----e
Confidence            3588999999888754          4678999998776542                       111111100     0


Q ss_pred             ccccccceeEEEeecCCCceEEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287          109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (513)
Q Consensus       109 ~~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (513)
                      .........++|+  +||++++++. .++.+.+||+.+++...........                   ...+.+..  
T Consensus       120 ~~~g~~p~~~a~S--pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~--  176 (368)
T d1mdah_         120 FSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-------------------HIHPGAAA--  176 (368)
T ss_dssp             CCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-------------------CCEEEETT--
T ss_pred             ecccCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-------------------eEccCCCc--
Confidence            0000234578894  5888888875 5799999999999877665443211                   11111111  


Q ss_pred             cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCccee
Q 010287          188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF  267 (513)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~  267 (513)
                               ..+..+.++.+..+++............ .....+...+....+.+++..+.+ ..+.+.+++........
T Consensus       177 ---------~~v~~~~Dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         177 ---------THYLGSCPASLAASDLAAAPAAAGIVGA-QCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATM  245 (368)
T ss_dssp             ---------EEECCCCTTSCEEEECCSSCCCCEECCC-CSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEE
T ss_pred             ---------eEEEEcCCCCEEEEEecCCceeeeeeec-ccccccccceeecccccCcEEEEe-cCCCEEEEeecCCceEE
Confidence                     0122334444555544333221111000 011233344556667777654443 34556666665433221


Q ss_pred             ee-cccCc---cccccccCCeEEEEEeCCCCeEEEEEeCC--------CcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287          268 NI-VDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSK--------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  335 (513)
Q Consensus       268 ~~-~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  335 (513)
                      .. .....   ............++++|++..+++....+        ..|.+||..+++..    ..+..         
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~---------  312 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN---------  312 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE---------
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC---------
Confidence            10 00000   00001112234578899884444433322        35889999988752    22222         


Q ss_pred             cccccccEEEEEEeecCC-EEE-EEe-CCeEEEEEccCCCCCeeeeecccc
Q 010287          336 FTEIIASISDIKFARNGR-HIL-SRD-YMTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       336 ~~~~~~~v~~i~~sp~~~-~l~-~~~-~~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                          ...+.+++|+|||+ +++ ++. ++.|++||..+ ++.+.++.....
T Consensus       313 ----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~  358 (368)
T d1mdah_         313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG  358 (368)
T ss_dssp             ----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred             ----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCC
Confidence                14588899999997 344 444 39999999997 888888775544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=2e-08  Score=90.74  Aligned_cols=185  Identities=8%  Similarity=0.006  Sum_probs=107.3

Q ss_pred             cCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          232 DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       232 ~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ...+.++.|+|+|++++++  ....|.+|+..........-   ...........+.++|+|++..++++...++.|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~---~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG---SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE---EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc---ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence            3457899999999999887  36788888876444332111   001122346789999999995555666678999999


Q ss_pred             EcCCcccccc-cceeecc--ccCCCCccccccccccEEEEEEeecCCEEEEEe--C-----CeEEEEEccCCCCCeeeee
Q 010287          310 DMRQSALCDT-HSKLFEE--QEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-----MTLKLWDINMDSGPVATFQ  379 (513)
Q Consensus       310 d~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-----~~v~iwd~~~~~~~~~~~~  379 (513)
                      ++..+..... .......  ............+......+.++|||++|+++.  +     ..|..|++...+.......
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            9876543110 0111110  000000001112234567789999999998753  1     3477788765333222111


Q ss_pred             cccccccccccccccCCccceeeEEEeC-CCCEEEEEe-CCCcEEEEecCCC
Q 010287          380 VHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGS-YSNLFRVFGCSEG  429 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~vwd~~~~  429 (513)
                      .......       ...   -..++++| +|++|+++. .++.|.+|++...
T Consensus       301 ~~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSC-------CTT---CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcC-------CCC---ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1110000       000   12689998 899887664 7799999988644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=1.1e-08  Score=89.97  Aligned_cols=240  Identities=13%  Similarity=0.104  Sum_probs=146.3

Q ss_pred             ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (513)
Q Consensus        36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  115 (513)
                      ..+..++++|||+++++...+++|..|+..+...                         .+....            ..+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-------------------------~~~~~~------------~~~   70 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------------IHATVE------------GKV   70 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------------EEEECS------------SEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-------------------------EEEcCC------------CCc
Confidence            3688999999999999999999888877433211                         122222            568


Q ss_pred             eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (513)
Q Consensus       116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (513)
                      .+++|  .++++++++...++.+..|+...........                                          
T Consensus        71 ~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  106 (302)
T d2p4oa1          71 SGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETL------------------------------------------  106 (302)
T ss_dssp             EEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEE------------------------------------------
T ss_pred             ceEEE--cCCCCeEEEecCCceEEEEEecccccceeec------------------------------------------
Confidence            99999  5588888888788888887765432111000                                          


Q ss_pred             CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc--
Q 010287          196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--  272 (513)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~--  272 (513)
                                                     ...........+++.++++++++. .++.+..++...+.......+.  
T Consensus       107 -------------------------------~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  155 (302)
T d2p4oa1         107 -------------------------------LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML  155 (302)
T ss_dssp             -------------------------------EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             -------------------------------cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc
Confidence                                           001122346788999999888776 5888888887755432221111  


Q ss_pred             CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287          273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  352 (513)
Q Consensus       273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  352 (513)
                      .+.........+..+.+..+  .++++.+..+.|..++......... ...+..             ......++++++|
T Consensus       156 ~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~-------------~~~pdgia~d~dG  219 (302)
T d2p4oa1         156 ARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGE-PEIFVE-------------QTNIDDFAFDVEG  219 (302)
T ss_dssp             SCSSTTCCSCSEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCC-CEEEEE-------------SCCCSSEEEBTTC
T ss_pred             ceeeccCcccccccccccCC--ceeeecCCCCeEEeccccccccccc-cccccC-------------CCCCcceEECCCC
Confidence            11111222344567777653  6778888899999888765432111 111111             1235679999999


Q ss_pred             CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE---eCCCCEEEEEeCC
Q 010287          353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL---SGDGGRVATGSYS  418 (513)
Q Consensus       353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  418 (513)
                      .+.++... +.|..++..  ++............             ..++++|   ++|++.|+.++..
T Consensus       220 ~l~va~~~~~~V~~i~p~--G~~~~~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         220 NLYGATHIYNSVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CEEEECBTTCCEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CEEEEEcCCCcEEEECCC--CCEEEEEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCC
Confidence            97777654 888888765  44333332222211             1348899   6788888766554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=1e-07  Score=82.45  Aligned_cols=157  Identities=10%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ....+++.++++++++. ..+.+.+++.. ++ ....+     ....+......+++.+++ +++++....+.|.+||..
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~-~~~~~-----g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN-VLHKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT
T ss_pred             ccceeccccCCcEEEEeeccceeeEeccC-Cc-eeecc-----cccccccccceeeeccce-eEEeeeccccceeeeecC
Confidence            36678889999888776 57778888765 22 22211     123455678899999998 888888889999999964


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                       ++.    +..+...          +.......|++.++|.++++-. . +.|.+|+..  ++.+..+.......     
T Consensus       187 -G~~----~~~~g~~----------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~-----  244 (279)
T d1q7fa_         187 -GQY----LRQIGGE----------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-----  244 (279)
T ss_dssp             -CCE----EEEESCT----------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-----
T ss_pred             -Cce----eeeeccc----------ccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCC-----
Confidence             332    2333211          1224578899999999777743 2 579999854  77666664332210     


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG  429 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  429 (513)
                              ....+++.|||.+++ ++.++.|++|+....
T Consensus       245 --------~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         245 --------QCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             --------CEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             --------CEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence                    023789999997655 557899999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=1.4e-08  Score=91.89  Aligned_cols=260  Identities=10%  Similarity=-0.021  Sum_probs=139.8

Q ss_pred             ccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEE
Q 010287          231 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL  308 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v  308 (513)
                      ....+..|+|+++++.|.++..+.+..|.+..........      ..........+.+++++..++++..  ..+.|..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~  111 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEA------SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEE------EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEe------eecCCCCcEEEEECCCCCEEEEEEecCCCCEEEE
Confidence            3444677999999999998876788888877544333221      0111233456677888733233332  2455555


Q ss_pred             EEcCCcccccccceeeccccCCCC----ccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeee--eec
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGT----RSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVAT--FQV  380 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~--~~~  380 (513)
                      +.+......   ...+........    ..........+.++.|+|||+++++++.  ..|.+|+....+.....  ...
T Consensus       112 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~  188 (365)
T d1jofa_         112 NPFYKFAGY---GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA  188 (365)
T ss_dssp             EEESSSCCE---EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             eEccCCCCc---ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee
Confidence            543221100   000000000000    0000011235789999999999998774  78999987653332211  111


Q ss_pred             ccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccc-eeec-----------------CCCC
Q 010287          381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTLE-----------------ASKN  441 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~-----------------~~~~  441 (513)
                      ....          .   ....+.|+|+++++++.. .++.|.+|++....... ....                 ....
T Consensus       189 ~~~g----------~---gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (365)
T d1jofa_         189 PDPG----------D---HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             SSTT----------C---CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             cCCC----------C---ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccC
Confidence            1000          0   123799999999886555 68899999987653221 1100                 1112


Q ss_pred             ceeEEEEcCCCCceeeecC--C----CeEEEecCCCC---CccccCCccccccCCeeEEEEeC-CCCEEEEEc--CCcEE
Q 010287          442 PMRRQVQTPSRPSRPLGSL--S----GVVRRVKGADN---SALDANGNAFDFSMKLLHLAWHP-SENSIACAA--SNSLY  509 (513)
Q Consensus       442 ~v~~~~~~~~~~~l~~~~~--d----~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~sp-~~~~la~~~--~~~~~  509 (513)
                      ....+.++|+|++|+++..  +    ..|........   ..................++++| +|++|+++.  ++.+.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            3457889999999877632  1    11322111111   00000001111234568899998 799888775  77888


Q ss_pred             EEe
Q 010287          510 MYY  512 (513)
Q Consensus       510 i~~  512 (513)
                      +|.
T Consensus       336 v~~  338 (365)
T d1jofa_         336 IYR  338 (365)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=6e-08  Score=85.12  Aligned_cols=199  Identities=12%  Similarity=0.031  Sum_probs=118.1

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  311 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~  311 (513)
                      ..+.+++|+++|+++++. .++.+..|+..........+     ...........+.+.+++ +++++.+.++.+..+|.
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL-----LTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE-----EECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec-----cccCCccccceeEEccCC-CEEeeccccccceeeec
Confidence            447899999999988887 67888888776443322211     111234567899999998 88888888999999988


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ..+....   .........   ............+.++  +..++.+. . +.|..++... .............     
T Consensus       142 ~~~~~~~---~~~~~~~~~---~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-----  207 (302)
T d2p4oa1         142 VQPSGSI---WLEHPMLAR---SNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDS-TDKPGEPEIFVEQ-----  207 (302)
T ss_dssp             TTTEEEE---EEECGGGSC---SSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCT-TSCBCCCEEEEES-----
T ss_pred             cCCccee---EecCCccce---eeccCccccccccccc--CCceeeecCCCCeEEeccccc-cccccccccccCC-----
Confidence            7654210   000000000   0011111234555554  45555543 3 8888888774 2222111110000     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE---cCCCCceeeec
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ---TPSRPSRPLGS  459 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~  459 (513)
                           ..   ...++++++|+++++...++.|..++....................++|   ++|++.|..++
T Consensus       208 -----~~---pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         208 -----TN---IDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             -----CC---CSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             -----CC---CcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence                 00   1279999999988888888999999876432223333334445678899   66777665443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.3e-07  Score=85.26  Aligned_cols=254  Identities=10%  Similarity=0.011  Sum_probs=119.8

Q ss_pred             eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcc-ccccc---------cCCeEEEEEeCCCCeEEEEEeC-C
Q 010287          235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA-NMEDL---------TEVITSAEFHPTHCNMLAYSSS-K  303 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~---------~~~i~~~~~~~~~~~~l~~~~~-d  303 (513)
                      +....|||||+.++-..++.|.+.+...+....-+.+-... .+.+.         ...-..+-|+||| +.||.... +
T Consensus       116 l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecc
Confidence            44466888888888877788888877654332111110000 00111         1112567899999 66666543 4


Q ss_pred             CcEEEEEcCCc--ccc--cc--------------cceeeccccCCCC-----ccccccccccEEEEEEeecCCEEEEEe-
Q 010287          304 GSIRLIDMRQS--ALC--DT--------------HSKLFEEQEAPGT-----RSFFTEIIASISDIKFARNGRHILSRD-  359 (513)
Q Consensus       304 g~i~vwd~~~~--~~~--~~--------------~~~~~~~~~~~~~-----~~~~~~~~~~v~~i~~sp~~~~l~~~~-  359 (513)
                      ..|..+.+...  ...  ..              .+..++.......     ..........+..+.|+|++++++... 
T Consensus       195 s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n  274 (465)
T d1xfda1         195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (465)
T ss_dssp             TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             cccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence            55555544221  100  00              0011111000000     000111223577899999998777632 


Q ss_pred             ---C-CeEEEEEccCCCCCeeeeeccc-ccccccccccccCCccceeeEEEeCCCCEEE---EEeCCC--cEEEEecCC-
Q 010287          360 ---Y-MTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVA---TGSYSN--LFRVFGCSE-  428 (513)
Q Consensus       360 ---~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg--~i~vwd~~~-  428 (513)
                         . ..+.++|..+ ++....+.... ..+.    ..       -....|+|||+.++   ..-.+|  .++...+.. 
T Consensus       275 R~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~----~~-------~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~  342 (465)
T d1xfda1         275 RAQNVSILTLCDATT-GVCTKKHEDESEAWLH----RQ-------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS  342 (465)
T ss_dssp             TTSCEEEEEEEETTT-CCEEEEEEEECSSCCC----CC-------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred             cccccceEEEEcCCC-CcEEEEEEEcCCceEe----cc-------CCceeEccCCCeeEEEEeeeecccCceEEEEeccc
Confidence               2 4677888875 55443332211 1110    00       01467999998543   222232  344443321 


Q ss_pred             ----CCccceeecCCCCceeEE-EEcCCCCcee-eecCC----CeEEE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          429 ----GSAESTTLEASKNPMRRQ-VQTPSRPSRP-LGSLS----GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       429 ----~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-~~~~d----~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                          .......+....-.|..+ .+..+++.+. ++..+    ..+.-  ..+....  ..............++.|||+
T Consensus       343 ~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~~~~~~~~~~~~S~~  420 (465)
T d1xfda1         343 QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDLVENCTYFSASFSHS  420 (465)
T ss_dssp             SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTSSSSCCCCEEEECTT
T ss_pred             cccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeeccccCCCCCEEEEEECCC
Confidence                112222333334445554 5777777654 33322    22322  2222111  111111122445679999999


Q ss_pred             CCEEEEE
Q 010287          497 ENSIACA  503 (513)
Q Consensus       497 ~~~la~~  503 (513)
                      +++++..
T Consensus       421 ~~y~v~~  427 (465)
T d1xfda1         421 MDFFLLK  427 (465)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9998844

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.1e-07  Score=78.99  Aligned_cols=180  Identities=14%  Similarity=0.174  Sum_probs=103.6

Q ss_pred             cccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          230 AHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      .+........|+|+++.++..  .++...++..........       .............+++++...+++...+|...
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeecccccccce-------eeeeccccccccccccccccceecccccCCce
Confidence            334556788999999998875  344333333322222111       12233444556677787745666666666555


Q ss_pred             EE--EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccc
Q 010287          308 LI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       308 vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      +|  ++..+...     .            ............|+|+++.++..+ + +...+|............. ...
T Consensus       153 i~~~~~~~~~~~-----~------------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~  214 (269)
T d2hqsa1         153 VYKVNINGGAPQ-----R------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STF  214 (269)
T ss_dssp             EEEEETTSSCCE-----E------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSS
T ss_pred             Eeeeecccccce-----e------------eecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cCc
Confidence            44  44433211     1            111224567789999999988754 3 5666665554233333322 222


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeC---CCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      .               .....|||||+.|+..+.   ...|+++++..+.  ...+......+...+|+|-
T Consensus       215 ~---------------~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~--~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         215 L---------------DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             S---------------CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECCC
T ss_pred             c---------------ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEEeCCCCcEEeEEeCCC
Confidence            1               126789999999875443   3468889988653  2345555667777888873

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=2e-07  Score=79.71  Aligned_cols=233  Identities=6%  Similarity=-0.032  Sum_probs=139.7

Q ss_pred             CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287          233 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  310 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd  310 (513)
                      ....+++++++|..+++.  ..+.+..++.........       ...+ ......+++++++ +++++....+.+++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeee
Confidence            346799999999987765  467788777664432221       1122 2345788999998 7777766666666665


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC  389 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  389 (513)
                      ..+...    ......             .....++++.+++.++++-.. ..+..++...  .......... .     
T Consensus        85 ~~~~~~----~~~~~~-------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~-~-----  139 (260)
T d1rwia_          85 GSNNQT----VLPFDG-------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFTG-L-----  139 (260)
T ss_dssp             TCSCCE----ECCCCS-------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCCS-C-----
T ss_pred             ecccee----eeeeee-------------eeecccccccccceeEeecccccccccccccc--ceeeeeeecc-c-----
Confidence            433322    111111             135788999999987776443 6666666542  2222221110 0     


Q ss_pred             cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287          390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG  469 (513)
Q Consensus       390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~  469 (513)
                              .....++++++++++++...++.|..++....... ............+++.+++.++++....+.|..+..
T Consensus       140 --------~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         140 --------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             --------CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             --------CCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence                    00127899999998888888889999998755322 222233344578999999998888887777665221


Q ss_pred             -CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287          470 -ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY  512 (513)
Q Consensus       470 -~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~  512 (513)
                       ..... ....   ..-.....|+++++++++++.. .+.|..+.
T Consensus       211 ~~~~~~-~~~~---~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         211 GSTTST-VLPF---TGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TCSCCE-ECCC---CSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCCeEE-EEcc---CCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence             11110 0101   1124578999999998777654 55665553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.91  E-value=1.3e-06  Score=76.62  Aligned_cols=124  Identities=6%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             CCeEEEEEeCCCC----eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          282 EVITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       282 ~~i~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                      ...+.++|+|++.    .++++-+..+.|..||+........ .+.+....        .........+++.++|++.++
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~~~--------~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVWGHIP--------GTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEECC--------CCSSCEEEEEEEBTTCCEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce-eeEEEEcc--------ccccccceeeEEecCCcEEEE
Confidence            3457889988752    2556667788999998754322111 11111100        001123567999999998877


Q ss_pred             EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE-EEEeCCCcEEEEecCCCC
Q 010287          358 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGS  430 (513)
Q Consensus       358 ~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~  430 (513)
                      ... +.|.+||.+. +.....+..+...               .++++|.||++.| ++.+.+|.|..+++....
T Consensus       243 ~~~~g~I~~~dp~~-g~~~~~i~~p~~~---------------~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         243 NWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EcCCCEEEEEeCCC-CEEEEEEECCCCC---------------EEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            655 9999999874 5555555543322               2479999999754 566778888888876544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=9.8e-07  Score=75.24  Aligned_cols=152  Identities=5%  Similarity=0.025  Sum_probs=96.6

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  312 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~  312 (513)
                      ...++++.++++++++- ....+..++.........       ... .......+++++++ +++++...++.|..+|..
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-------~~~-~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------PFT-GLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-------CCC-SCCSCCEEEECTTC-CEEEEEGGGTEEEEECTT
T ss_pred             ecccccccccceeEeeccccccccccccccceeeee-------eec-ccCCcceeeecCCC-CEeeeccccccccccccc
Confidence            36789999999887766 577777777654332211       111 12345789999998 888888888999999976


Q ss_pred             CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287          313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL  391 (513)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ....     ..+..           ........|+++++|.++++... +.|..++...  .....+....         
T Consensus       170 ~~~~-----~~~~~-----------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~~---------  222 (260)
T d1rwia_         170 SNNQ-----VVLPF-----------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTG---------  222 (260)
T ss_dssp             TCCE-----EECCC-----------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCCS---------
T ss_pred             ccee-----eeeec-----------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccCC---------
Confidence            5432     11111           11135688999999988777665 7888777652  2222221111         


Q ss_pred             cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287          392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC  426 (513)
Q Consensus       392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  426 (513)
                           +.....++++++|+++++-..+++|+.++.
T Consensus       223 -----~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 -----LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -----CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -----CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                 001237999999988877677776665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=2.8e-06  Score=73.16  Aligned_cols=240  Identities=11%  Similarity=0.133  Sum_probs=146.8

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eCCCcEEEEEc
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM  311 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~vwd~  311 (513)
                      ....++++++++.+++- ..+.|++||.+ ++....+-..  ..-.+.......+.+.++....+++. +.++.|.+++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC--GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB--SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEeccc--CCCcccccccccccccccccccceeccCCccccccccc
Confidence            46789999999988776 68999999976 3322221100  01112233456677666643444443 34567777764


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD  390 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  390 (513)
                      . +..    ...+...           .......+++.+++.++++... +.+.+++..  ++.+..+.......     
T Consensus       101 ~-g~~----~~~~~~~-----------~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~-----  157 (279)
T d1q7fa_         101 Y-GQF----VRKFGAT-----------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLE-----  157 (279)
T ss_dssp             T-SCE----EEEECTT-----------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCS-----
T ss_pred             c-ccc----eeecCCC-----------cccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccccccccc-----
Confidence            3 332    2222211           1145778999999988877655 778888765  66666553322211     


Q ss_pred             ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee--cCCCCceeEEEEcCCCCceeeecC-CCeEEEe
Q 010287          391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLGSL-SGVVRRV  467 (513)
Q Consensus       391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~  467 (513)
                              ....+++.++++.+++....+.|++|+...  .....+  .+.......+++.++|+.+++-.. ++.|.+.
T Consensus       158 --------~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         158 --------FPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             --------SEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             --------ccceeeeccceeEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence                    123788999999888888899999999763  233333  234455678999999998777544 4457662


Q ss_pred             cC-CCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287          468 KG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY  512 (513)
Q Consensus       468 ~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~  512 (513)
                      .. ++... .+.  ..........+++.|||.++++..++.+.+|.
T Consensus       228 ~~~G~~~~-~~~--~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         228 TQDGQLIS-ALE--SKVKHAQCFDVALMDDGSVVLASKDYRLYIYR  270 (279)
T ss_dssp             CTTSCEEE-EEE--ESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             CCCCCEEE-EEe--CCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence            21 11110 000  00112357899999999887777788888874

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.7e-07  Score=78.43  Aligned_cols=219  Identities=12%  Similarity=0.059  Sum_probs=120.3

Q ss_pred             cccCCeEEEEeccCCCEEEEE--c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287          230 AHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  305 (513)
Q Consensus       230 ~h~~~v~~~~~~~~~~~l~s~--~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  305 (513)
                      .+...+...+|||||+.|+..  .  ...+.+.+.......         .+..+........|+|++..++.....++.
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---------EEeeeecccccceecCCCCeeeEeeecCCc
Confidence            445667889999999999975  2  334666666544332         234456778899999999444444444554


Q ss_pred             EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-C--eEEEEEccCCCCCeeeeecc
Q 010287          306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVH  381 (513)
Q Consensus       306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~--~v~iwd~~~~~~~~~~~~~~  381 (513)
                      ..++.........  ....             ..........+++++..++... . +  .|.+.++..  .....+...
T Consensus       107 ~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~~~~  169 (269)
T d2hqsa1         107 LNLYVMDLASGQI--RQVT-------------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRITWE  169 (269)
T ss_dssp             CEEEEEETTTCCE--EECC-------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECCCS
T ss_pred             cceeecccccccc--eeee-------------eccccccccccccccccceecccccCCceEeeeeccc--ccceeeecc
Confidence            4444332222100  1111             1113344556777777666533 2 4  455555543  222222222


Q ss_pred             cccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287          382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      ...               .....|+|+++.++..+. .+...+|......... .+...........|+|||+.|+..+.
T Consensus       170 ~~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         170 GSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             SSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             ccc---------------ccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEc
Confidence            211               236789999999886654 4444555443332222 23334455667899999999986554


Q ss_pred             C---CeEEE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287          461 S---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS  496 (513)
Q Consensus       461 d---~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~  496 (513)
                      .   ..+.+  ..+....      ........+...+|||-
T Consensus       234 ~~~~~~l~~~~~dg~~~~------~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ETTEEEEEEEETTSCCEE------ECCCSSSEEEEEEECCC
T ss_pred             CCCCcEEEEEECCCCCEE------EEeCCCCcEEeEEeCCC
Confidence            3   23333  2222221      22223567788999994

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.80  E-value=5.2e-06  Score=72.91  Aligned_cols=233  Identities=12%  Similarity=0.085  Sum_probs=136.3

Q ss_pred             CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC----CcEEE
Q 010287          234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRL  308 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~v  308 (513)
                      .+..++|.++|+++++- ..++|+.|+.........        ..........+++++++ +++++...+    +.+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~--------~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE--------EeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEE
Confidence            35689999999877766 689999998875432221        12234567899999998 777665432    33444


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-----CeEEEEEccCCCCCeeeeecccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      .+......    ........          -......+.+.++|++.++...     ..-.+|-+...+..+..+...-.
T Consensus       112 ~~~~~~~~----~~~~~~~~----------~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~  177 (319)
T d2dg1a1         112 ATENGDNL----QDIIEDLS----------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS  177 (319)
T ss_dssp             ECTTSCSC----EEEECSSS----------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES
T ss_pred             EcCCCcee----eeeccCCC----------cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc
Confidence            45444332    11111110          0134778999999997776321     12233433322444443322111


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCccceeec-------CCCCceeEEEEcCCCCce
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPSR  455 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l  455 (513)
                      .               -..++|+||++.|+ +-+..+.|+.|++...........       ........+++..+|++.
T Consensus       178 ~---------------pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~  242 (319)
T d2dg1a1         178 V---------------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  242 (319)
T ss_dssp             S---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             e---------------eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence            1               12799999998765 445778999999865422211111       111223478999999988


Q ss_pred             eeecCCCeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287          456 PLGSLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA  504 (513)
Q Consensus       456 ~~~~~d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  504 (513)
                      ++...++.|.++  ++..+....+......+...+++++|.|+...|.+.+
T Consensus       243 Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         243 VAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            877777877772  2222222223333334556789999999988776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.79  E-value=7.4e-06  Score=71.64  Aligned_cols=198  Identities=12%  Similarity=0.064  Sum_probs=114.7

Q ss_pred             eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccc-cCCeEEEEEeCCCCeEEEEEeC----------
Q 010287          235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS----------  302 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~----------  302 (513)
                      ...++|.++++.++++ ..+.|...+...........     ...+. -...+.+++.++| ++.++-..          
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~-----~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~  146 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK-----DSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB-----CTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCB
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec-----cccccccCCCcEEEECCCC-CEEEecCccCcccccccc
Confidence            5689999999887777 56778888876433221100     11111 1235788999998 76665322          


Q ss_pred             -----CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC----EEEEEe-C-CeEEEEEccCC
Q 010287          303 -----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR----HILSRD-Y-MTLKLWDINMD  371 (513)
Q Consensus       303 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----~l~~~~-~-~~v~iwd~~~~  371 (513)
                           .|.|..++.. ++.    ...             .......+.++|+|++.    .|+.++ . +.|..||+...
T Consensus       147 ~~~~~~G~v~~~~~d-g~~----~~~-------------~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~  208 (314)
T d1pjxa_         147 SMQEKFGSIYCFTTD-GQM----IQV-------------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE----EEE-------------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             eeccCCceEEEEeec-Cce----eEe-------------eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence                 1223222221 111    000             11112356789999764    455544 3 88999988753


Q ss_pred             CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287          372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  451 (513)
                      +. +...........        .....--.+++..+|++.++....+.|.+||.+.+ .....+.........++|.|+
T Consensus       209 g~-~~~~~~~~~~~~--------~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d  278 (314)
T d1pjxa_         209 AK-IENKKVWGHIPG--------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             TE-EEEEEEEEECCC--------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTT
T ss_pred             cc-cceeeEEEEccc--------cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC-EEEEEEECCCCCEEEEEEeCC
Confidence            32 221110000000        00000116899999998888878899999998866 344555555566788999999


Q ss_pred             CC-ceeeecCCCeEEE
Q 010287          452 RP-SRPLGSLSGVVRR  466 (513)
Q Consensus       452 ~~-~l~~~~~d~~i~~  466 (513)
                      ++ ++++.+.++.|..
T Consensus       279 ~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         279 TKTIFVTEHENNAVWK  294 (314)
T ss_dssp             SSEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCcEEE
Confidence            87 4566667777765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=2.6e-05  Score=68.29  Aligned_cols=153  Identities=5%  Similarity=-0.013  Sum_probs=90.0

Q ss_pred             eEEEEeccCCCEEEEEc-------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287          235 INSISNNSDGETFISAD-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  307 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  307 (513)
                      ...+++.++|++.++..       .+.+..++...  ....       .+...-...+.++|+|++..++++-+..+.|.
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~-------~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVT-------PIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEE-------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEeccc--ceeE-------EEeeccceeeeeeeccccceEEEecccCCceE
Confidence            66788999998777641       23344444432  1111       11122344678999999844667767789999


Q ss_pred             EEEcCCcccccccc-eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287          308 LIDMRQSALCDTHS-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR  385 (513)
Q Consensus       308 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  385 (513)
                      .||+.......... ......         .........+++.++|.+.++... +.|.+||..  ++.+..+.......
T Consensus       203 ~~d~~~~g~~~~~~~~~~~~~---------~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~--G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         203 RIALEDDGVTIQPFGATIPYY---------FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEECTTSSSEEEEEEEEEEE---------CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGG
T ss_pred             EEEEcCCCceeccccceeeec---------cCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC--CcEEEEEeCCCcCC
Confidence            99976432111000 000000         000123567999999998777655 999999964  78887776543211


Q ss_pred             cccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287          386 PKLCDLYENDSIFDKFECCLSGDGGRVATGS  416 (513)
Q Consensus       386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  416 (513)
                      .         ....+++++|.+++..+++.+
T Consensus       272 ~---------~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 G---------HMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             T---------CSCBCCEEEECTTSCEEEEEE
T ss_pred             C---------cCceeeeEEEeCCCCEEEEEc
Confidence            0         011134889999887776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.0003  Score=60.47  Aligned_cols=144  Identities=11%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             eEEEEeccCCCEEEEE-c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287          235 INSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  309 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw  309 (513)
                      ++.+.+.++|++.++. .    .+.-.+|.+..++ ...        +...-.....+.|++++..++++-+..+.|..|
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~--------~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTK--------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEE--------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEE--------EeeccCCcceeeecCCCceEEEeecccceeeEe
Confidence            6778889999887764 2    2345566665443 221        112234467899999985566777778899999


Q ss_pred             EcCCcc--cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287          310 DMRQSA--LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       310 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      ++....  ...+ ...+..         ..+..+....+++..+|.+.++.-. +.|..||..  ++.+..+......  
T Consensus       176 ~~d~~~~~~~~~-~~~~~~---------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~--  241 (295)
T d2ghsa1         176 PLDARTGLPTGK-AEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ--  241 (295)
T ss_dssp             EBCTTTCCBSSC-CEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB--
T ss_pred             eecccccccccc-eEEEec---------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCc--
Confidence            874321  1111 111110         0112245788999999988877654 889999965  7888887665432  


Q ss_pred             ccccccccCCccceeeEEEe-CCCCEEEE
Q 010287          387 KLCDLYENDSIFDKFECCLS-GDGGRVAT  414 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~  414 (513)
                                   +++++|- +|.+.|+.
T Consensus       242 -------------~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         242 -------------TTCPAFIGPDASRLLV  257 (295)
T ss_dssp             -------------EEEEEEESTTSCEEEE
T ss_pred             -------------eEEEEEeCCCCCEEEE
Confidence                         4589996 67666653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.30  E-value=9.8e-05  Score=63.04  Aligned_cols=70  Identities=10%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             EEcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287           42 EFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (513)
Q Consensus        42 ~~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~  119 (513)
                      ..|||  |+.||..+ +|.|.+.++.+++.                        ..+..+.            ..+...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~------------------------~~Lt~~~------------~~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST------------------------RKIVSNL------------GVINNAR   47 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE------------------------EEEECSS------------SEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE------------------------EEEecCC------------CcccCEE
Confidence            35788  99988765 45788888877653                        2233344            5678889


Q ss_pred             EeecCCCceEEEeec-CC-----eEEEEEccCceeee
Q 010287          120 WCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKK  150 (513)
Q Consensus       120 ~~~~~~~~~l~s~s~-d~-----~i~vw~~~~~~~~~  150 (513)
                      |+|  ||+.|+-... ++     .|.+.+..+++...
T Consensus        48 ~SP--DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2          48 FFP--DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             ECT--TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ECC--CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            955  8888886532 22     36666666666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.1e-06  Score=79.71  Aligned_cols=169  Identities=15%  Similarity=0.149  Sum_probs=100.3

Q ss_pred             EEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe---------CCCcEEE
Q 010287          238 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------SKGSIRL  308 (513)
Q Consensus       238 ~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------~dg~i~v  308 (513)
                      ..|.+++.++....+|.|.+||+.+++... +++.  ..+  ....+....|+||+ +.++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~-l~~~--~~~--~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTV-LIEG--KKI--ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEE-EECT--TTT--TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEE-EEcC--ccc--cccccceeEECCCC-CeEEEEEcccceeEeeccccEEE
Confidence            358888877765578899999998766432 2211  111  22356778899999 6555543         3567889


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeee-cccccc-c
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLR-P  386 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~-~~~~~~-~  386 (513)
                      +|+.++...     .+....         .....+....|||||+.||-..++.|.+.+... +...+... +....+ .
T Consensus        96 ~d~~~~~~~-----~l~~~~---------~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          96 SKIPHGDPQ-----SLDPPE---------VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             EESSSCCCE-----ECCCTT---------CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEEE
T ss_pred             EEccCCcee-----eccCcc---------CCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceeec
Confidence            999887641     111110         011345667899999999988888899988875 44443332 111110 1


Q ss_pred             ccc-cccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287          387 KLC-DLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS  427 (513)
Q Consensus       387 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  427 (513)
                      ... ..|+......-.++.|||||++||... ++..+..+.+.
T Consensus       161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             cccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence            111 111111111113678999999999765 45556666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=3.4e-05  Score=66.05  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             eccC--CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCC-----cEEEEEc
Q 010287          240 NNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----SIRLIDM  311 (513)
Q Consensus       240 ~~~~--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----~i~vwd~  311 (513)
                      .+|+  |+.++-..++.|.+.|+..++..         .+..+...+...+|+||| +.|+... .++     .|.+++.
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---------~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTR---------KIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEE---------EEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEET
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEE---------EEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEe
Confidence            5688  99888777788988899865532         344556778899999999 6666543 232     3666676


Q ss_pred             CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287          312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  358 (513)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~  358 (513)
                      .++....  +......        ............|+|+|+.|+..
T Consensus        76 ~~g~~~~--lt~~~~~--------~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          76 ENGEIKR--ITYFSGK--------STGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             TTTEEEE--CCCCCEE--------EETTEECSEEEEECTTCCEEEEE
T ss_pred             cCCceEE--eeecCCC--------ccCccccccccccCCCCCEEEEE
Confidence            6655311  1110000        01111345678899999998864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.0017  Score=55.56  Aligned_cols=185  Identities=13%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----CCcEEEE
Q 010287          234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLI  309 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~vw  309 (513)
                      .+.++++.+++.+++++.+ .|.++|..+++.. .+.+..   -......++.+.+.|+| ++.++...    .+.-.+|
T Consensus        60 ~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~-~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             CEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEE
T ss_pred             CcEEEEEecCCCEEEEEeC-ccEEeecccceee-EEeeee---cCCCcccceeeEECCCC-CEEEEeccccccccceeEe
Confidence            4678888888877776554 5889999876532 121110   01123457899999999 66555432    2234556


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCe----eeeecccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPV----ATFQVHEH  383 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~----~~~~~~~~  383 (513)
                      .+..++.    ......             ......++|+++++.++..+ . +.|..|++.......    ..+.....
T Consensus       134 ~~~~g~~----~~~~~~-------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~  196 (295)
T d2ghsa1         134 HVAKGKV----TKLFAD-------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG  196 (295)
T ss_dssp             EEETTEE----EEEEEE-------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             eecCCcE----EEEeec-------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc
Confidence            6555442    111111             13457899999998777654 4 899999876322111    11100000


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc-CCCCce
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSR  455 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l  455 (513)
                      ...            ..-.+++..+|++.++.-..+.|..||.. + +....+......+++++|- ++.+.|
T Consensus       197 ~~g------------~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-~~~~~i~lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         197 IKG------------GMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             SSS------------EEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             ccc------------cccceEEcCCCCEEeeeeCCCceEEecCC-C-cEeeEecCCCCceEEEEEeCCCCCEE
Confidence            000            01278899999988877778899999975 4 4555666555567888884 565544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.22  E-value=0.033  Score=48.10  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=89.7

Q ss_pred             EEEEeccCCCEEEEEc-------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eCCCCeEEEEE
Q 010287          236 NSISNNSDGETFISAD-------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYS  300 (513)
Q Consensus       236 ~~~~~~~~~~~l~s~~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~  300 (513)
                      -.++..|+|..++++.             .|.|.++|+.........+...........-....+..  .+++..+|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            3577778887776652             38899999876554332221111011111122344443  34553345554


Q ss_pred             e---CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----------------C
Q 010287          301 S---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----------------M  361 (513)
Q Consensus       301 ~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----------------~  361 (513)
                      .   ...+|.+|++............+..+.           ....+++.+..++.++++-+.                +
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~-----------~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCcc-----------ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            3   456788888765433222233333222           145788999999988888321                1


Q ss_pred             eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCC
Q 010287          362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEG  429 (513)
Q Consensus       362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  429 (513)
                      ...+|.... +. .+.....-..               -..++++||+++|+.+ +..+.|++|++...
T Consensus       187 ~g~v~~~~~-~~-~~~~~~~l~~---------------pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         187 WSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CEEEEEECS-SC-EEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceeEEEEcC-Cc-eEEEcCCCCc---------------cceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            234444432 22 2211111010               2379999999887655 46788999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.074  Score=43.91  Aligned_cols=173  Identities=8%  Similarity=-0.003  Sum_probs=93.9

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE--
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI--  309 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw--  309 (513)
                      .+.++++..-+..|..+  ..+.|.+.++...... .+       +......+..++++|....++.+-...+..+|+  
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l-------~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VL-------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-EE-------ecccccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence            36788888766666655  5789999998744322 11       122235688999999873444443332333344  


Q ss_pred             EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeee-eccccccc
Q 010287          310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATF-QVHEHLRP  386 (513)
Q Consensus       310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~-~~~~~~~~  386 (513)
                      ++.....     ..+-           .........+++++.++.|.-.+.  +.|...++.  +...+.+ .+...+  
T Consensus       152 ~~dG~~~-----~~i~-----------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--g~~~~~v~~~~~~P--  211 (263)
T d1npea_         152 HMDGTNR-----RILA-----------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQYP--  211 (263)
T ss_dssp             ETTSCCC-----EEEE-----------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEEEECCCSE--
T ss_pred             cCCCCCc-----eeee-----------eecccccceEEEeecCcEEEEEeCCCCEEEEEECC--CCCeEEEECCCCCc--
Confidence            4332211     1111           011135688999988877766553  888888886  3322222 211111  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT  449 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  449 (513)
                                    +.+++. ++.+..+-...+.|...|..+++......+........+++.
T Consensus       212 --------------~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         212 --------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             --------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             --------------EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence                          256665 333334545678888888887743323333333333344443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.91  E-value=0.011  Score=51.61  Aligned_cols=77  Identities=9%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc----ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      ...+.++|||++++++  -+.++.++|++.-...+.- ..++.    ......-.....+|...| +...+...|..|.-
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~-~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k  354 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK  354 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc-cCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence            5678999999999987  4999999999743222100 00010    011224446778899988 77777788999999


Q ss_pred             EEcCC
Q 010287          309 IDMRQ  313 (513)
Q Consensus       309 wd~~~  313 (513)
                      |++..
T Consensus       355 w~~~~  359 (459)
T d1fwxa2         355 WNIED  359 (459)
T ss_dssp             EEHHH
T ss_pred             Eecch
Confidence            99854

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.74  E-value=0.16  Score=44.52  Aligned_cols=59  Identities=10%  Similarity=0.005  Sum_probs=34.4

Q ss_pred             eEEEeCCCCEEEEEeCCC-----------cEEEEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecC
Q 010287          402 ECCLSGDGGRVATGSYSN-----------LFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSL  460 (513)
Q Consensus       402 ~~~~s~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~  460 (513)
                      .....+|+++++.|+.+.           ++.+||..+..-.. ..+...+..-....+.++|+.++.|+.
T Consensus       293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            456678999999888531           46789987653211 111111111113345788898888863

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.32  E-value=0.3  Score=42.67  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             cEEEEEEcCCCCEEEeecCC-CcEEEEEeeCCC
Q 010287           37 IISAIEFDKSGDHLATGDRG-GRVVLFERTDTR   68 (513)
Q Consensus        37 ~V~~v~~sp~g~~latg~~d-g~i~iw~~~~~~   68 (513)
                      .....++.++|++++.|+.+ ..+.+||..+..
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            33456788999999998765 579999976654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.97  E-value=0.44  Score=41.42  Aligned_cols=105  Identities=10%  Similarity=0.109  Sum_probs=61.7

Q ss_pred             cEEEEEEeecCCEEEEEeC--CeEEEEEccCC-------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287          342 SISDIKFARNGRHILSRDY--MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV  412 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  412 (513)
                      ....+.++|||+++++++.  .++.|+|++.-       ..+...+.+....  .          .+-...+|+..|.-.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el--g----------lgPLht~fd~~g~ay  343 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL--G----------LGPLHTAFDGRGNAY  343 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC--C----------SCEEEEEECTTSEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc--C----------cCccccccCCCceEE
Confidence            3567899999999999774  99999998641       1111111111000  0          001246888888655


Q ss_pred             EEEeCCCcEEEEecCCC---------CccceeecCCCCceeE-----EEEcCCCCceeee
Q 010287          413 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRR-----QVQTPSRPSRPLG  458 (513)
Q Consensus       413 ~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~  458 (513)
                      .+---|..|.-|++...         ...+..+..|-.+=.-     -...|+|++|++.
T Consensus       344 tslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~  403 (459)
T d1fwxa2         344 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  403 (459)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             EEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence            56668999999998532         1222333333332211     1236899999886

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.91  E-value=0.35  Score=39.76  Aligned_cols=199  Identities=13%  Similarity=0.054  Sum_probs=100.2

Q ss_pred             EEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-------CCcEEEEE
Q 010287          238 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLID  310 (513)
Q Consensus       238 ~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------dg~i~vwd  310 (513)
                      -.|-.+ +.|+--.+..|+-|+++......++++..+ .+  ....|..-..+++. ++++..+-       .|.+.+|.
T Consensus       108 WkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR~~-~L--~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS  182 (327)
T d1utca2         108 WKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SL--AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS  182 (327)
T ss_dssp             EEESSS-SEEEEECSSEEEEEESSSSCCCEEEEECCG-GG--TTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEecCC-CEEEEEcCCceEEEcccCCCCchhhhhhcc-cc--cCceEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEE
Confidence            345433 355555667899999975444444443222 22  24567777888887 66554332       36777888


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEee--cC-CEEEEE---eC-CeEEEEEccCCCCCeeeeecccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NG-RHILSR---DY-MTLKLWDINMDSGPVATFQVHEH  383 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~-~~l~~~---~~-~~v~iwd~~~~~~~~~~~~~~~~  383 (513)
                      .+.+.     ...++            +|.+....+.+..  +. .+++-+   .. +.++|.++..+...-..+.....
T Consensus       183 ~er~~-----sQ~ie------------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~v  245 (327)
T d1utca2         183 VDRKV-----SQPIE------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  245 (327)
T ss_dssp             TTTTE-----EEEEC------------CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEE
T ss_pred             eccCc-----Ccccc------------ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeE
Confidence            76543     12222            2323333222221  11 122212   22 78899888752111111100000


Q ss_pred             cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287          384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  463 (513)
                      ... ......++.  +| ++..++.-..+..-+.-|.|++||++++..+ ..-....++|...+-..+..-++....+|.
T Consensus       246 di~-fppea~~DF--Pv-amqvs~kygiiyviTK~G~i~lyDleTgt~i-~~nRIs~~~iF~~a~~~~~~Gi~~VNr~Gq  320 (327)
T d1utca2         246 DVF-FPPEAQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPHEATAGIIGVNRKGQ  320 (327)
T ss_dssp             ECC-CCTTCTTCC--EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEE-CCccccCCc--EE-EEEeeccCCEEEEEecCcEEEEEEcccccEE-EEeecCCCceEEeccCCCCceEEEECCCCe
Confidence            000 000001111  12 6888888888999999999999999999443 334444555544444433333333333433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.72  E-value=0.51  Score=40.25  Aligned_cols=125  Identities=8%  Similarity=0.080  Sum_probs=68.7

Q ss_pred             CeEEEEE--eCCCCe-EEEEEeCCCcEEEEEcCC---cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287          283 VITSAEF--HPTHCN-MLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  356 (513)
Q Consensus       283 ~i~~~~~--~~~~~~-~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~  356 (513)
                      .+..+++  ++.... +++....+|.+..|.+..   +....+.++.+...             ..+..|.+.+....|+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-------------~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-------------SQTEGMAADDEYGSLY  195 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-------------SCEEEEEEETTTTEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-------------CccceEEEeCCCCcEE
Confidence            3566666  665423 556677789998887643   33333445555543             4688999999888888


Q ss_pred             EEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe--CCCC-EEEEEe-CCCcEEEEecCCC
Q 010287          357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS--GDGG-RVATGS-YSNLFRVFGCSEG  429 (513)
Q Consensus       357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~-~l~~~~-~dg~i~vwd~~~~  429 (513)
                      .+.+ ..|+.++..........+-......         ....++-.+++-  .+++ ||++.+ .++++.+||....
T Consensus       196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~---------~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEETTTEEEEEESSTTSCSCCEEEEECSSS---------SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EecCccceEEEEeccCCCccceeeecccCc---------cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8876 5555555542111111111000000         001123345433  3433 666555 5788999998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.03  E-value=0.73  Score=37.81  Aligned_cols=133  Identities=7%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             CeEEEEeccCCCEEEE-E---c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeC-
Q 010287          234 HINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSS-  302 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s-~---~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~-  302 (513)
                      .|..-..+++.++++. |   .    .|.+.+|..+....  +       .+++|......+.+.  +....+|+.+.. 
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s--Q-------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~  219 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--Q-------PIEGHAASFAQFKMEGNAEESTLFCFAVRG  219 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--E-------EECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC--c-------cccceeeeeEEEEcCCCCCCceEEEEEECC
Confidence            3556666777777664 2   1    46788998874332  2       456776555444443  121133433322 


Q ss_pred             --CCcEEEEEcCCccccccc--ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287          303 --KGSIRLIDMRQSALCDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT  377 (513)
Q Consensus       303 --dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~  377 (513)
                        .+.+++.++.........  .+..+..-.+.      .-.+-..++..|+....+..-+. |.+++||+.+ +.++..
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i~~  292 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYM  292 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEE
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCcc------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEEEE
Confidence              357888887653221110  11111111111      11245677889987777777665 9999999997 776655


Q ss_pred             eeccc
Q 010287          378 FQVHE  382 (513)
Q Consensus       378 ~~~~~  382 (513)
                      -+...
T Consensus       293 nRIs~  297 (327)
T d1utca2         293 NRISG  297 (327)
T ss_dssp             EECCS
T ss_pred             eecCC
Confidence            44433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.72  Score=37.62  Aligned_cols=195  Identities=8%  Similarity=-0.032  Sum_probs=111.5

Q ss_pred             ccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287          231 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  308 (513)
Q Consensus       231 h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  308 (513)
                      +...+.+++|.+..+.+.-+  .++.|+..+++..... .+       +......+..+++..-+.++..+-...+.|.+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v-------~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~  105 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TI-------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EE-------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EE-------EEeccccccEEEEeccCCeEEEeccCCCEEEE
Confidence            33447789999877777766  5888998888754332 21       11223467899998766366666667789999


Q ss_pred             EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeeccccccc
Q 010287          309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRP  386 (513)
Q Consensus       309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~  386 (513)
                      .++.....     ..+-.           ........++++|...+++-.. . +..+|+.....+.....+....-.  
T Consensus       106 ~~~dg~~~-----~~l~~-----------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~--  167 (263)
T d1npea_         106 AKMDGTQR-----RVLFD-----------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG--  167 (263)
T ss_dssp             EETTSCSC-----EEEEC-----------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS--
T ss_pred             EecCCceE-----EEEec-----------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc--
Confidence            99764432     11111           1113578999999777666543 2 333455444334433333211100  


Q ss_pred             ccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287          387 KLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR  465 (513)
Q Consensus       387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  465 (513)
                                  ....+++.+.++.|+.. ...+.|...++... .....+.+...|. .+++. .+....+-...+.|.
T Consensus       168 ------------~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~~P~-~lav~-~~~lYwtd~~~~~I~  232 (263)
T d1npea_         168 ------------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYPF-AVTSY-GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             ------------CEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSEE-EEEEE-TTEEEEEETTTTEEE
T ss_pred             ------------ccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCCCcE-EEEEE-CCEEEEEECCCCEEE
Confidence                        01378999888777654 46778888888744 2323344434443 56654 333334433444444


Q ss_pred             E
Q 010287          466 R  466 (513)
Q Consensus       466 ~  466 (513)
                      .
T Consensus       233 ~  233 (263)
T d1npea_         233 A  233 (263)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.36  E-value=1.6  Score=38.76  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCC
Q 010287          233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPT  292 (513)
Q Consensus       233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~  292 (513)
                      ...++|+|.|++++|++- ..|.|++++..++.. ..+..+.. ......+.....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCC
Confidence            457899999999999988 589999998775442 22211110 111222456889999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=1.2  Score=36.40  Aligned_cols=182  Identities=7%  Similarity=-0.080  Sum_probs=98.0

Q ss_pred             EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287          246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  325 (513)
Q Consensus       246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  325 (513)
                      +|+.+....|+..++.+.... .+        ......+..+.|++....++.+-...+.|...++........ .... 
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~-~~--------~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~-~~~~-   71 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTV-   71 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCE-EE--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEE-
T ss_pred             EEEEECCCeEEEEECCCCcce-ee--------eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc-eEEE-
Confidence            455555556888888754322 11        123445788999988734444434566676666543221100 0111 


Q ss_pred             cccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeee-ecccccccccccccccCCccceee
Q 010287          326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFE  402 (513)
Q Consensus       326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~  402 (513)
                                .......+..+++.+.+..|...+ . +.|.+.++.  +.....+ ......               ...
T Consensus        72 ----------~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~--g~~~~~~~~~~~~~---------------P~~  124 (266)
T d1ijqa1          72 ----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGSK---------------PRA  124 (266)
T ss_dssp             ----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTCC---------------EEE
T ss_pred             ----------EeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC--CceEEEEEcCCCCC---------------cce
Confidence                      011113467789988777777655 3 899999987  3333222 211111               137


Q ss_pred             EEEeCCCCEEEEEe--CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEE
Q 010287          403 CCLSGDGGRVATGS--YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR  466 (513)
Q Consensus       403 ~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~  466 (513)
                      ++++|...+|....  ..+.|.-.++... ...............+++.+.++.|.-+ ...+.|..
T Consensus       125 l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~  190 (266)
T d1ijqa1         125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (266)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeeccccEEEEecCCcCEEEE
Confidence            88998776666443  3445666666533 2222223333445788898877655544 55666665

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=1.8  Score=35.25  Aligned_cols=159  Identities=10%  Similarity=0.004  Sum_probs=89.5

Q ss_pred             CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEE
Q 010287          234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID  310 (513)
Q Consensus       234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd  310 (513)
                      .+.++++.+.++.|..+  ..++|.+.++....... +       +.........++++|....++.+-. ..+.|...+
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~-~-------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-L-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE-E-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEE-E-------EcCCCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence            35678888766666665  47899999988443222 1       1223456789999986534444432 234565555


Q ss_pred             cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccccccccc
Q 010287          311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKL  388 (513)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~  388 (513)
                      +.....     ..+-.           ........+++++.+..|.-++.  +.|...++.. ...............  
T Consensus       150 ~dGs~~-----~~l~~-----------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~~--  210 (266)
T d1ijqa1         150 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH--  210 (266)
T ss_dssp             TTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSS--
T ss_pred             cCCCce-----ecccc-----------cccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCcccc--
Confidence            543221     11111           11135688999998877776653  8888888863 222222222111100  


Q ss_pred             ccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCcc
Q 010287          389 CDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       389 ~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~  432 (513)
                                 ...+++.  +.+|. +-..++.|+..+..++...
T Consensus       211 -----------p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         211 -----------PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             -----------EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             -----------cEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence                       1255655  34444 4456788888887776433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.89  E-value=2.8  Score=36.85  Aligned_cols=101  Identities=12%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             eEEEEeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287          235 INSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----  303 (513)
Q Consensus       235 v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  303 (513)
                      +...+++|++++++.+ +     .-.|+++|+.+++....       .+.  ......++|.+++ ..|+....+     
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-------~i~--~~~~~~~~W~~D~-~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------VLE--RVKFSCMAWTHDG-KGMFYNAYPQQDGK  196 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------EEE--EECSCCEEECTTS-SEEEEEECCCCSSC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-------ccc--cccccceEEcCCC-CEEEEEEeccccCc
Confidence            4566789999999975 2     34699999998764422       111  1122468899998 555544332     


Q ss_pred             -----------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287          304 -----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  357 (513)
Q Consensus       304 -----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~  357 (513)
                                 ..|..+.+.+.....  ...++....          ...+..+..++++++++.
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d--~~v~~e~d~----------~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSED--ILCAEFPDE----------PKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGC--EEEECCTTC----------TTCEEEEEECTTSCEEEE
T ss_pred             ccccccccCCcceEEEEECCCCcccc--ccccccccC----------CceEEeeeccCCcceeeE
Confidence                       256667766544322  223332221          134667788899998874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.39  E-value=5.2  Score=36.62  Aligned_cols=25  Identities=16%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          408 DGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       408 ~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      .+.++++|+.||.++-+|.++++.+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEE
Confidence            4667888999999999999999544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.17  E-value=3.8  Score=34.63  Aligned_cols=190  Identities=8%  Similarity=0.129  Sum_probs=97.6

Q ss_pred             eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee------cCCEEEEEeC-----CeE
Q 010287          295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDY-----MTL  363 (513)
Q Consensus       295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp------~~~~l~~~~~-----~~v  363 (513)
                      .+++....++-+.+||+. |+..    ..+..              +.+..|..-.      ...-++++++     ..|
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l----~~~~~--------------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l  101 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKML----HSYHT--------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEE----EECCS--------------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEE----Eeccc--------------CCcCccccccccccCCcceEEEEEeCCcCcceeE
Confidence            567766777779999985 5442    22221              3455555432      2223444432     368


Q ss_pred             EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE--eCC-CC-EEEEEeCCCcEEEEecCCCCc--c----c
Q 010287          364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGD-GG-RVATGSYSNLFRVFGCSEGSA--E----S  433 (513)
Q Consensus       364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~~~~~--~----~  433 (513)
                      .+|.+......+..+........        .....+..+|+  ++. |. ++++...+|.+..|.+.....  .    .
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~--------~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv  173 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIA--------SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV  173 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEE--------CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEecCcccccccccccccccc--------cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee
Confidence            88888743333333322211100        01112336666  664 44 456777889999887743221  1    1


Q ss_pred             eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC--CCCccccC--CccccccCCeeEEEEe--CCCC-EEEEEc--
Q 010287          434 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDAN--GNAFDFSMKLLHLAWH--PSEN-SIACAA--  504 (513)
Q Consensus       434 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~--~~~~~~~~~i~~~~~s--p~~~-~la~~~--  504 (513)
                      ..+.. ...+..+++....+.|..+-++..+..+...  ......+.  .....+...+..|+.-  +++. +|++++  
T Consensus       174 r~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         174 RAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             EEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             eccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence            22222 3456688888888888777776665542111  11100010  0011245677777744  3333 555443  


Q ss_pred             CCcEEEEe
Q 010287          505 SNSLYMYY  512 (513)
Q Consensus       505 ~~~~~i~~  512 (513)
                      ++++.||.
T Consensus       253 ~n~f~vyd  260 (353)
T d1h6la_         253 NSSYAIYE  260 (353)
T ss_dssp             GTEEEEEE
T ss_pred             CCeEEEEe
Confidence            77888874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.96  E-value=4.7  Score=35.32  Aligned_cols=35  Identities=11%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             cccEEEEEEcCCCCEEEeec-----CCCcEEEEEeeCCCC
Q 010287           35 VDIISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRD   69 (513)
Q Consensus        35 ~~~V~~v~~sp~g~~latg~-----~dg~i~iw~~~~~~~   69 (513)
                      .-.+..+++||+++++|.+-     ....|+++|+.+++.
T Consensus       124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             cceecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            33455678899999988532     334599999888764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.59  E-value=6.2  Score=36.08  Aligned_cols=26  Identities=4%  Similarity=0.003  Sum_probs=20.7

Q ss_pred             ceEEEeecCCeEEEEEccCceeeeee
Q 010287          127 ALYLLSTNDKTIKLWKVQEKKVKKVF  152 (513)
Q Consensus       127 ~~l~s~s~d~~i~vw~~~~~~~~~~~  152 (513)
                      ..++.++.|+.+.--|.++++.....
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccc
Confidence            36778889999998899999866544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.43  E-value=8.9  Score=34.88  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=21.8

Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287          406 SGDGGRVATGSYSNLFRVFGCSEGSAE  432 (513)
Q Consensus       406 s~~~~~l~~~~~dg~i~vwd~~~~~~~  432 (513)
                      +-.+.++++|+.||.++-+|.++++.+
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEe
Confidence            335668888999999999999999544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.89  E-value=9.8  Score=31.86  Aligned_cols=34  Identities=6%  Similarity=0.049  Sum_probs=27.2

Q ss_pred             cCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287          281 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  314 (513)
Q Consensus       281 ~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  314 (513)
                      -...+.++++|++..++++-+..+.|++|++...
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            3568899999998566777777899999998643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.69  E-value=12  Score=32.76  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=37.7

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287          282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  351 (513)
Q Consensus       282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  351 (513)
                      ...++|+|.|++ ++|++--..|.|++++..++....  +..+.....      ...-.+....|+++|+
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~--i~~~~~~~~------~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT--VFQVPEIVN------DADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE--EEECTTCCC------CTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEee--cccCCcccc------ccCCCCceeeEEeCCC
Confidence            457899999998 777765557999999877665311  111110000      0111246889999984

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.74  E-value=12  Score=31.86  Aligned_cols=187  Identities=9%  Similarity=0.008  Sum_probs=95.2

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCe
Q 010287          283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT  362 (513)
Q Consensus       283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~  362 (513)
                      ...-++.++.. .+++.|+.++ ++|..+..-+.      .++....... .........|..++|+.+  .++...++.
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~------~~~~~~~~~~-~~~~~~ip~v~~vafs~d--~l~v~~~~~  106 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRD------HITSDSTPLT-FKWEKEIPDVIFVCFHGD--QVLVSTRNA  106 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHH------HHHSSSCCCC-CSEEEECTTEEEEEEETT--EEEEEESSE
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHH------HhhccCCCCc-ceeccCCCCeEEEEeeCC--EEEEEeCCC
Confidence            34567778776 5777777775 55665432110      0000000000 000111135888999744  566666677


Q ss_pred             EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec----C
Q 010287          363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----A  438 (513)
Q Consensus       363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~  438 (513)
                      +..++... -........-...               +.++.++|.  .++....+|.+.++++..++.......    .
T Consensus       107 l~~~~~~~-l~~~~~~~~~~~~---------------~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~  168 (381)
T d1xipa_         107 LYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD  168 (381)
T ss_dssp             EEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred             EEEEEeec-ccccccccccccc---------------ccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE
Confidence            88888764 2222211111111               235566554  566677789999999987743221110    1


Q ss_pred             CCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE
Q 010287          439 SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC  502 (513)
Q Consensus       439 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~  502 (513)
                      -...+.++.|++.++.++++..+ ...+ .+...+.  .+.. .......|.++.|-.+..++++
T Consensus       169 ~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~--~~~~-p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         169 VTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPS--ELEE-LPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             ECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCH--HHHT-SCTTTSEEEEEEESSSSEEEEE
T ss_pred             ecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCcc--ccCC-CcCCCcceeEEEEecCceEEEE
Confidence            12456677888888777776322 2222 0011111  0100 0112456889999888777763

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.23  E-value=15  Score=31.22  Aligned_cols=154  Identities=11%  Similarity=0.078  Sum_probs=77.9

Q ss_pred             cEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287          342 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF  421 (513)
Q Consensus       342 ~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  421 (513)
                      ...-++.++...++++|+...+.|..+.. -  ...+.......    .+.....+..|..++|+.|  .|+.. .++.+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~-l--~~~~~~~~~~~----~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQL-L--RDHITSDSTPL----TFKWEKEIPDVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHH-H--HHHHHSSSCCC----CCSEEEECTTEEEEEEETT--EEEEE-ESSEE
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHH-H--HHHhhccCCCC----cceeccCCCCeEEEEeeCC--EEEEE-eCCCE
Confidence            35568888877778777765677877542 0  00000000000    0000011223568899755  45544 34568


Q ss_pred             EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcccc--CCccccccCCeeEEEEeCCCCE
Q 010287          422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA--NGNAFDFSMKLLHLAWHPSENS  499 (513)
Q Consensus       422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~  499 (513)
                      ..++...-... .....-..++..+...|..  ++....++.+.++...+.....+  ......-++.+.+++|++.++.
T Consensus       108 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~p~~--~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         108 YSLDLEELSEF-RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             EEEESSSTTCE-EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             EEEEeeccccc-cccccccccccceecCCce--eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            88887654222 2223334567777777753  33333455544411111110001  1112223577899999999998


Q ss_pred             EEEEcCCcE
Q 010287          500 IACAASNSL  508 (513)
Q Consensus       500 la~~~~~~~  508 (513)
                      ++++..+..
T Consensus       185 ~v~~~g~~~  193 (381)
T d1xipa_         185 SFAWRNGEM  193 (381)
T ss_dssp             EEEEETTEE
T ss_pred             EEEeCCCce
Confidence            887754433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=80.73  E-value=4.9  Score=36.82  Aligned_cols=56  Identities=9%  Similarity=0.141  Sum_probs=35.2

Q ss_pred             CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccc
Q 010287          253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD  318 (513)
Q Consensus       253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  318 (513)
                      |.|.-||+.+++...+....         .+...-...-.+ .++++++.||.++.+|.++|+.+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~---------~p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV---------SPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES---------SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccEEEeCCCCCceEeeecCC---------CCCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEeE
Confidence            46777777777666543211         111111122244 577789999999999999999843

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.53  E-value=21  Score=32.47  Aligned_cols=58  Identities=5%  Similarity=-0.013  Sum_probs=37.5

Q ss_pred             CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc
Q 010287          252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT  319 (513)
Q Consensus       252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  319 (513)
                      .|.|.-+|+.+++...+....         .++..-..+..+ .++++++.||.++-+|.++|+.+.+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~---------~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH---------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES---------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC---------CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeEE
Confidence            467788888887766653211         111111122344 5777899999999999999998543