Citrus Sinensis ID: 010291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHccccccEEEEEccEEEcccHHHHccccHHHHHHHcccccccccccEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHcccccHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccEEcccEEccccccccEEEEEcccccHHHHHHHHHcHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MEGGIPPLVELLEFTDTKVQRAAAGALRTLafkndenknqivecnALPTLILMLRSEDSAIHYEAVGVIGnlvhsspnikKEVLAAGALQPVIGLLSSCCSESQREAALLLGQfaatdsdckvhivqrgavrpliemlqspdvqLREMSAFALGRLAQDMHNqagiahngglvPLLKlldskngslqhNAAFALygladnednvADFIRVggvqklqdgEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHlcspddqrtifiDGGGLELLLGLlgstnpkqqLDGAVALFKLANkattlssvdaappsptpqvylgdqfvnnatlsdvtfLVEGRRFYAHRICLLASSDAFRAMFdggyrekdardieipnIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHfdklstrpghsnlIQRIIPEIHNYFAKaltkpnphnsrl
Flexible Loop (DISEMBL)
MEGGIPPLVELLEFTDTKVQRAAAGALRtlafkndenknqiVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGgyrekdardieiPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKaltkpnphnsrl
Low Complexity Region (SEG)
MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDggglelllgllgSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Disordered region (IsUnstruct)
*******LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT**************QVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKAL**********
Disordered Region (DISOPRED)
MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAK************
Disordered Region (DISEMBL)
MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Disordered Region (DISPRO)
*EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
B9DHT4	710	ARM REPEAT PROTEIN INTERA	yes	no	0.871	0.629	0.865	0.0
B7U179	737	ARMADILLO BTB ARABIDOPSIS	no	no	0.894	0.622	0.675	0.0
O08764	1009	Ankyrin repeat and BTB/PO	yes	no	0.370	0.188	0.291	2e-19
Q9VFP2	829	Protein roadkill OS=Droso	no	no	0.407	0.252	0.310	2e-19
Q7TQI7	1024	Ankyrin repeat and BTB/PO	yes	no	0.387	0.194	0.295	3e-19
Q8N961	839	Ankyrin repeat and BTB/PO	yes	no	0.387	0.237	0.285	6e-19
Q6IQ16	392	Speckle-type POZ protein-	no	no	0.368	0.482	0.311	1e-18
P0CM60	630	Vacuolar protein 8 OS=Cry	yes	no	0.606	0.493	0.285	3e-18
P0CM61	630	Vacuolar protein 8 OS=Cry	N/A	no	0.606	0.493	0.285	3e-18
Q4WVW4	578	Vacuolar protein 8 OS=Neo	yes	no	0.407	0.361	0.345	4e-18

>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/505 (86%), Positives = 475/505 (94%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NKNQIVECNALPTLILML SED+A
Sbjct: 196 VEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNKNQIVECNALPTLILMLGSEDAA 255

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSSCC ESQREAALLLGQFA+TDSD
Sbjct: 256 IHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAALLLGQFASTDSD 315

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQD HNQAGIAH+GGL PLLKLLD
Sbjct: 316 CKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLD 375

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           S+NGSLQHNAAFALYGLADNEDNV+DFIRVGG+QKLQDGEFIVQATKDCV+KTLKRLEEK
Sbjct: 376 SRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDCVSKTLKRLEEK 435

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVL HLLYLMR++EK +QRRVALALAHLCSP+DQRTIFID  GLELLLGLLGS N K
Sbjct: 436 IHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQRTIFIDDNGLELLLGLLGSLNTK 495

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGA AL+KLANK+  LS VDAAPPSPT +VYLG+Q+VNNATLSDVTFLVEGR FYAH
Sbjct: 496 QQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLSDVTFLVEGRTFYAH 555

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREKDARDIEIPNI+WEVFELMMRFIYTGSVD+T +I++DLL
Sbjct: 556 RICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSVDITNEISKDLL 615

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRLCEYTIAQDI+LE++  MYELSEAFHA+SLR  CI++I+EHFDKLS+
Sbjct: 616 RAADQYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIMFILEHFDKLSS 675

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTK 505
            P  + L+QR IPEI  YF +ALTK
Sbjct: 676 MPWQNELVQRTIPEIREYFCRALTK 700

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.
Arabidopsis thaliana (taxid: 3702)

>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/506 (67%), Positives = 421/506 (83%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +EGGI PLVELL F D KVQRAAAGALRT++F+NDENK+QIVE NALPTL+LML+S+DS 
Sbjct: 223 VEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRNDENKSQIVELNALPTLVLMLQSQDST 282

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +H EA+G IGNLVHSSP+IKKEV+ AGALQPVIGLLSS C E+QREAALL+GQFAA DSD
Sbjct: 283 VHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIGLLSSTCLETQREAALLIGQFAAPDSD 342

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHI QRGA+ PLI+ML+S D Q+ EMSAFALGRLAQD HNQAGIAH GG++ LL LLD
Sbjct: 343 CKVHIAQRGAITPLIKMLESSDEQVVEMSAFALGRLAQDAHNQAGIAHRGGIISLLNLLD 402

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
            K GS+QHNAAFALYGLADNE+NVADFI+ GG+QKLQD  F VQ T+DCV +TLKRL+ K
Sbjct: 403 VKTGSVQHNAAFALYGLADNEENVADFIKAGGIQKLQDDNFTVQPTRDCVVRTLKRLQNK 462

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHG VLN LLYLMR AEK VQ R+ALALAHLC P D + IFID  G+E LL LL  ++ K
Sbjct: 463 IHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDPKDGKLIFIDNNGVEFLLELLYFSSNK 522

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQ   + AL++LA KAT+ +  D+AP SPT QV+LG++FVNN T+SDVTFL++G++FYAH
Sbjct: 523 QQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKFVNNPTMSDVTFLIDGKQFYAH 582

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           +I L+ASSD FRAMFDG Y+E++A+++EIPNIRWEVFELMM+FIY+G +++   +A+DLL
Sbjct: 583 KIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYSGRINIAKHLAKDLL 642

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
            AADQYLLEGLKR CEYTIAQ+I L+N+  MYEL++ F+A +LR  C L+++EHF KLS+
Sbjct: 643 VAADQYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSS 702

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKP 506
           +   +  +++IIPEI +Y    LT+P
Sbjct: 703 QLWFAKFVKQIIPEIRSYMTDILTRP 728

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Rattus norvegicus GN=Abtb2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 286 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 345
           GL+L+  +L ++     L     +F      + + S+       T    L   F+NN  +
Sbjct: 785 GLQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEI--RKTLPARLDPHFLNNKEM 842

Query: 346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRF 403
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      +   +++ IEI +I++ +F+++M++
Sbjct: 843 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDNSKTIEISDIKYHIFQMLMQY 902

Query: 404 IYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFH 459
           +Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  +
Sbjct: 903 LYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIHN 961

Query: 460 AISLRHTCILYIMEHFDKL 478
           A  L   C  + ++H   L
Sbjct: 962 APELALFCEGFFLKHMKAL 980

May be involved in the initiation of hepatocyte growth.

Rattus norvegicus (taxid: 10116)

>sp|Q9VFP2|RDX_DROME Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 23/232 (9%)

Query: 257 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316
           +K ++R   L  A+   P+D+ TIF +   +   + + G +N        +  FK+    
Sbjct: 589 KKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSN--------IVQFKV---- 636

Query: 317 TTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFD 376
                     P       LG+ F +N   SDVT  V GR F AH+  L A SD F AMF+
Sbjct: 637 ----------PECKLSEDLGNLF-DNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFE 685

Query: 377 GGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
               E+    + I ++  EV + M+RFIYTG       +A DLL AAD+Y LE LK +CE
Sbjct: 686 HEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCE 745

Query: 437 YTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
             +  ++S+E  +    L++   A  L+   I +I  H   +    G  N+I
Sbjct: 746 EALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMI 797

Involved in segment polarity. In complex with gft/CUL3, promotes ubiquitination of ci and its subsequent degradation by the proteasome, which results in hh signaling attenuation. This regulation may be important during eye formation for proper packing of ommatidia into an hexagonal array.

Drosophila melanogaster (taxid: 7227)

>sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Mus musculus GN=Abtb2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 286 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 345
           GL+L+  +L ++     L     +F      + + S+       T    L   F+NN  +
Sbjct: 786 GLQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEI--RKTLPARLDPHFLNNKEM 843

Query: 346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD---ARDIEIPNIRWEVFELMMR 402
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E+D   ++ IEI +I++ +F+++M+
Sbjct: 844 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-SEQDGDSSKTIEISDIKYHIFQMLMQ 902

Query: 403 FIYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
           ++Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  
Sbjct: 903 YLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIH 961

Query: 459 HAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
           +A  L   C  + ++H   L  +     LI
Sbjct: 962 NAPELALFCEGFFLKHMKALLEQDAFRQLI 991

May be involved in the initiation of hepatocyte growth.

Mus musculus (taxid: 10090)

>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 286 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 345
           GL+L+  +L ++     +     +F     ++ + S+       T    L   F+NN  +
Sbjct: 601 GLQLMFDILKTSKNDSVIQQLATIFTHCYGSSPIPSIPEI--RKTLPARLDPHFLNNKEM 658

Query: 346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD---ARDIEIPNIRWEVFELMMR 402
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E+D   ++ IEI ++++ +F++MM+
Sbjct: 659 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-SEQDGDSSKTIEISDMKYHIFQMMMQ 717

Query: 403 FIYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
           ++Y G  +     T DI + LL AA  + L+ L+R CE   +Q +S+E+  + Y+ ++  
Sbjct: 718 YLYYGGTESMEIPTTDILE-LLSAASLFQLDALQRHCEILCSQTLSMESAVNTYKYAKIH 776

Query: 459 HAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
           +A  L   C  + ++H   L  +     LI
Sbjct: 777 NAPELALFCEGFFLKHMKALLEQDAFRQLI 806

May be involved in the initiation of hepatocyte growth.

Homo sapiens (taxid: 9606)

>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 29/218 (13%)

Query: 257 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316
           +K ++R   L  A+   PDD+ T+F +   ++  + + G TN                  
Sbjct: 134 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTN-----------------T 176

Query: 317 TTLSSVDAAPPSPTPQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRA 373
            TL           P+  L +   N   N   +D +F V G+ F AH+  L A S  F A
Sbjct: 177 NTLK---------VPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNA 227

Query: 374 MFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKR 433
           MF+    E     +EI ++  EVF+ MMRFIYTG       +A +LL AAD+Y LE LK 
Sbjct: 228 MFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKYALERLKV 287

Query: 434 LCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYI 471
           +CE  +  ++S+ENV+    L++   A  L+   I +I
Sbjct: 288 MCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Homo sapiens (taxid: 9606)

>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 15/326 (4%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
           GG+ PL+  +   + +VQ  A G +  LA  +DENK QI +  AL  L  + +S+D  + 
Sbjct: 127 GGLEPLIRQMLSPNVEVQCNAVGCITNLA-THDENKTQIAKSGALVPLTRLAKSKDMRVQ 185

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
             A G + N+ HS  N +++++AAGA+  ++ LL+S  ++ Q      L   A  D+  +
Sbjct: 186 RNATGALLNMTHSDEN-RQQLVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIA-VDAANR 243

Query: 123 VHIVQRGA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
             + Q     V+ L++++ S  ++++  +A AL  LA D   Q  I   GGL PLL+LL 
Sbjct: 244 KKLAQSEPKLVQSLVQLMDSQSLKVQCQAALALRNLASDSKYQLEIVKFGGLKPLLRLLH 303

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ-----DGEFIVQATKDCVAKTLK 235
           S    L  +AA  +  ++ +  N +  I  G +Q L      D    VQ       + L 
Sbjct: 304 SSYLPLILSAAACVRNVSIHPANESPIIESGFLQPLIELLSFDENEEVQCHAISTLRNLA 363

Query: 236 RLEEKIHGRV-----LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 290
              EK  G +     +  +  L+      VQ  +   +A L   DD +   ++ G  E+L
Sbjct: 364 ASSEKNKGAIVEAGAVEKIKSLVLTVPLAVQSEMTACVAVLALSDDLKPQLLEMGICEVL 423

Query: 291 LGLLGSTNPKQQLDGAVALFKLANKA 316
           + L  S + + Q + A AL  L++KA
Sbjct: 424 IPLTNSPSVEVQGNSAAALGNLSSKA 449

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 15/326 (4%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
           GG+ PL+  +   + +VQ  A G +  LA  +DENK QI +  AL  L  + +S+D  + 
Sbjct: 127 GGLEPLIRQMLSPNVEVQCNAVGCITNLA-THDENKTQIAKSGALVPLTRLAKSKDMRVQ 185

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
             A G + N+ HS  N +++++AAGA+  ++ LL+S  ++ Q      L   A  D+  +
Sbjct: 186 RNATGALLNMTHSDEN-RQQLVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIA-VDAANR 243

Query: 123 VHIVQRGA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
             + Q     V+ L++++ S  ++++  +A AL  LA D   Q  I   GGL PLL+LL 
Sbjct: 244 KKLAQSEPKLVQSLVQLMDSQSLKVQCQAALALRNLASDSKYQLEIVKFGGLKPLLRLLH 303

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ-----DGEFIVQATKDCVAKTLK 235
           S    L  +AA  +  ++ +  N +  I  G +Q L      D    VQ       + L 
Sbjct: 304 SSYLPLILSAAACVRNVSIHPANESPIIESGFLQPLIELLSFDENEEVQCHAISTLRNLA 363

Query: 236 RLEEKIHGRV-----LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 290
              EK  G +     +  +  L+      VQ  +   +A L   DD +   ++ G  E+L
Sbjct: 364 ASSEKNKGAIVEAGAVEKIKSLVLTVPLAVQSEMTACVAVLALSDDLKPQLLEMGICEVL 423

Query: 291 LGLLGSTNPKQQLDGAVALFKLANKA 316
           + L  S + + Q + A AL  L++KA
Sbjct: 424 IPLTNSPSVEVQGNSAAALGNLSSKA 449

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 5/214 (2%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           + P++ LL+ +D +VQRAA+ AL  LA  N ENK  IV    L  LI  + S +  +   
Sbjct: 108 LEPILFLLQSSDIEVQRAASAALGNLAV-NAENKVLIVALGGLTPLIRQMMSPNVEVQCN 166

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           AVG I NL     N K ++  +GAL P+I L  S     QR A   L     +D D +  
Sbjct: 167 AVGCITNLATHEDN-KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTHSD-DNRQQ 224

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG--LVPLLKLLDSK 182
           +V  GA+  L+++L SPDV ++     AL  +A D  N+  +A      +  L+ L+DS 
Sbjct: 225 LVNAGAIPVLVQLLSSPDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDSS 284

Query: 183 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 216
              +Q  AA AL  LA +E    + +R  G+  L
Sbjct: 285 TPKVQCQAALALRNLASDEKYQLEIVRAKGLPPL 318

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
255552325	719	protein binding protein, putative [Ricin	0.896	0.639	0.947	0.0
225432592	705	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.900	0.655	0.931	0.0
225432594	711	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	1.0	0.721	0.921	0.0
449432712	703	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.898	0.655	0.923	0.0
224102035	720	predicted protein [Populus trichocarpa]	1.0	0.712	0.918	0.0
356536027	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.892	0.647	0.906	0.0
356497472	706	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.888	0.645	0.911	0.0
356541384	708	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.875	0.634	0.915	0.0
356575815	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.892	0.647	0.902	0.0
357480803	702	Speckle-type POZ protein-like protein [M	0.886	0.648	0.891	0.0

>gi|255552325|ref|XP_002517207.1| protein binding protein, putative [Ricinus communis] gi|223543842|gb|EEF45370.1| protein binding protein, putative [Ricinus communis]

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/513 (94%), Positives = 501/513 (97%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +EGGIPPLVELLEF DTKVQRAAAGALRTLAFKNDENK QIVECNALPTLILMLRSED+A
Sbjct: 207 VEGGIPPLVELLEFVDTKVQRAAAGALRTLAFKNDENKKQIVECNALPTLILMLRSEDAA 266

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 267 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 326

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAV+PLIEMLQSPDVQLREMSAFALGRLAQD+HNQAGIAHNGGLVPLLKLLD
Sbjct: 327 CKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDLHNQAGIAHNGGLVPLLKLLD 386

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 387 SKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 446

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVL+HLLYLMRV EK VQRRVALALAHLCSPDDQRTIFID  GLELLLGLLGST+PK
Sbjct: 447 IHGRVLHHLLYLMRVTEKAVQRRVALALAHLCSPDDQRTIFIDNNGLELLLGLLGSTSPK 506

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGAVAL+KLANKA TLS VDAAPPSPTPQVYLG+QFVNNATLSDVTFLVEGRRFYAH
Sbjct: 507 QQLDGAVALYKLANKAATLSPVDAAPPSPTPQVYLGEQFVNNATLSDVTFLVEGRRFYAH 566

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV+LDIAQDLL
Sbjct: 567 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVSLDIAQDLL 626

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRLCEYTIAQDISLENV+SMYELSEAFHAISLRHTCIL+I+E FDKL+ 
Sbjct: 627 RAADQYLLEGLKRLCEYTIAQDISLENVASMYELSEAFHAISLRHTCILFILEQFDKLNA 686

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           +P HSNLIQRIIPEI NYFAKALTKPNPHNSRL
Sbjct: 687 KPRHSNLIQRIIPEIRNYFAKALTKPNPHNSRL 719

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432592|ref|XP_002281388.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera] gi|297737016|emb|CBI26217.3| unnamed protein product [Vitis vinifera]

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/513 (93%), Positives = 497/513 (96%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPLV+LLEF DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+A
Sbjct: 193 MEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAA 252

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 253 IHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 312

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHI QRGAVRPLIEMLQS DVQLREMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLD
Sbjct: 313 CKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLD 372

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFI+VGGVQKLQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 373 SKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 432

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVLNHLLYLMRV+EK VQRRVALALAHLCS DDQRTIFID  GLELLLGLLGS++PK
Sbjct: 433 IHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLELLLGLLGSSSPK 492

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDG+VAL+KLANKA TLS VDAAPPSPTPQVYLG+Q+VN+ATLSDVTFLV G+RFYAH
Sbjct: 493 QQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVGGKRFYAH 552

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV++TLDIAQDLL
Sbjct: 553 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLL 612

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCIL+I+E F KLS+
Sbjct: 613 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSS 672

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           RPGHS+LIQRIIPEI  YFAKALTKPNPHNSRL
Sbjct: 673 RPGHSHLIQRIIPEIRTYFAKALTKPNPHNSRL 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432594|ref|XP_002281401.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 2 [Vitis vinifera]

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/519 (92%), Positives = 497/519 (95%), Gaps = 6/519 (1%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPLV+LLEF DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+A
Sbjct: 193 MEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAA 252

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 253 IHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 312

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ------DMHNQAGIAHNGGLVP 174
           CKVHI QRGAVRPLIEMLQS DVQLREMSAFALGRLAQ      D HNQAGIAHNGGLVP
Sbjct: 313 CKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQKFLFCQDTHNQAGIAHNGGLVP 372

Query: 175 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 234
           LLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFI+VGGVQKLQDGEFIVQATKDCVAKTL
Sbjct: 373 LLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTL 432

Query: 235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 294
           KRLEEKIHGRVLNHLLYLMRV+EK VQRRVALALAHLCS DDQRTIFID  GLELLLGLL
Sbjct: 433 KRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLELLLGLL 492

Query: 295 GSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEG 354
           GS++PKQQLDG+VAL+KLANKA TLS VDAAPPSPTPQVYLG+Q+VN+ATLSDVTFLV G
Sbjct: 493 GSSSPKQQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVGG 552

Query: 355 RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 414
           +RFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV++TLD
Sbjct: 553 KRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVEITLD 612

Query: 415 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEH 474
           IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCIL+I+E 
Sbjct: 613 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQ 672

Query: 475 FDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           F KLS+RPGHS+LIQRIIPEI  YFAKALTKPNPHNSRL
Sbjct: 673 FSKLSSRPGHSHLIQRIIPEIRTYFAKALTKPNPHNSRL 711

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432712|ref|XP_004134143.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cucumis sativus]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/513 (92%), Positives = 497/513 (96%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+A
Sbjct: 191 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAA 250

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSPNIK+EVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 251 IHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 310

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CK+HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ+ HNQAGIAHNGGL+PLLKLLD
Sbjct: 311 CKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLD 370

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 371 SKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 430

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVLNHLL+LMRVAEK VQRRV+LALAHLCSPDDQRTIFID  GLELLLGLLGS++ K
Sbjct: 431 IHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCSPDDQRTIFIDNNGLELLLGLLGSSSLK 490

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGAVAL+KLANKATTLSSVDAAPPSPTPQVYLG+Q+VNN TLSDVTFLVEGRRF+AH
Sbjct: 491 QQLDGAVALYKLANKATTLSSVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFHAH 550

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREKDA+DIEIPNIRWEVFELMMRF+YTGSVDV+LDIAQDLL
Sbjct: 551 RICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVSLDIAQDLL 610

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRL EYTIAQDISLENVSSMYELSEAF+AISLRHTCIL+I+E F+KLS 
Sbjct: 611 RAADQYLLEGLKRLSEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFEKLSL 670

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
            PGHS LIQRI+PEI NYFAKALTK N  +SRL
Sbjct: 671 MPGHSLLIQRILPEIRNYFAKALTKVNLQSSRL 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102035|ref|XP_002312519.1| predicted protein [Populus trichocarpa] gi|222852339|gb|EEE89886.1| predicted protein [Populus trichocarpa]

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/516 (91%), Positives = 492/516 (95%), Gaps = 3/516 (0%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC ALPTLILMLRS+D+A
Sbjct: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECYALPTLILMLRSDDAA 264

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSPNIK+EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 265 IHYEAVGVIGNLVHSSPNIKREVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLD
Sbjct: 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLD 384

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFI VGGVQKLQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 385 SKNGSLQHNAAFALYGLADNEDNVSDFISVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG---LELLLGLLGST 297
           IHGRVLNHLLYLMRVAEK VQRRVALALAHLCSPDDQR IFID  G   L+LLLGLLGS+
Sbjct: 445 IHGRVLNHLLYLMRVAEKAVQRRVALALAHLCSPDDQRAIFIDNCGTAGLDLLLGLLGSS 504

Query: 298 NPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRF 357
           + KQQLDGA+AL++LANKATTLS VDAAPPSPTPQVYLG+Q+VNN TLSDVTFLVEGRRF
Sbjct: 505 SLKQQLDGAIALYRLANKATTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRF 564

Query: 358 YAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ 417
           YAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL IAQ
Sbjct: 565 YAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLIIAQ 624

Query: 418 DLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDK 477
           DLLRAADQYLLEGLKRLCEYTIAQDI+LEN+ SMYELSEAFHAISLRH CIL+I+E FDK
Sbjct: 625 DLLRAADQYLLEGLKRLCEYTIAQDITLENIGSMYELSEAFHAISLRHRCILFILEQFDK 684

Query: 478 LSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           LS +P HS LIQRIIPEI NYF KALT P+ HNSRL
Sbjct: 685 LSDKPRHSQLIQRIIPEIRNYFEKALTNPHQHNSRL 720

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536027|ref|XP_003536542.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/513 (90%), Positives = 487/513 (94%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPLV LL+F D KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+ 
Sbjct: 195 MEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAG 254

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +HYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 255 VHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 314

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAV+PLIEMLQSPDVQLREMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLD
Sbjct: 315 CKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLD 374

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDN +DFIRVGGVQ+LQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 375 SKNGSLQHNAAFALYGLADNEDNASDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEK 434

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVLNHLLYLMRV+EKG QRRVALALAHLCS DDQR IFID  GLELL+GLLGS++ K
Sbjct: 435 IHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSK 494

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGAVAL KLA+KA+TLS VDAAPPSPTPQVYLG+Q+VNNATLSDVTFLVEG+RFYAH
Sbjct: 495 QQLDGAVALCKLADKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAH 554

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREK+ARDIEIPNIRWEVFELMMRF+Y GSVDVTLDIAQDLL
Sbjct: 555 RICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLL 614

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL+EAF+AISLRH CIL+I+E FDKLS+
Sbjct: 615 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELTEAFNAISLRHACILFILEQFDKLSS 674

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           RPGHS LIQRI PEI NYF KALTK N  N RL
Sbjct: 675 RPGHSLLIQRITPEIRNYFVKALTKANSQNDRL 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497472|ref|XP_003517584.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/507 (91%), Positives = 482/507 (95%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
            EGGIPPLV LLEF DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+A
Sbjct: 195 FEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAA 254

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           IHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 255 IHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 314

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAVRPLIEMLQS DVQL+EMSAFALGRLAQD HNQAGI HNGGL+PLLKLLD
Sbjct: 315 CKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIVHNGGLMPLLKLLD 374

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFIRVGG+Q+LQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 375 SKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEK 434

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVLNHLLYLMRV+EK  QRRVAL LAHLCS DDQR IFID  GLELL+GLLGS NPK
Sbjct: 435 IHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPK 494

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGAVAL KLANKA TLS VDAAPPSPTPQVYLG+Q+VNNATLSDVTFLVEG+RFYAH
Sbjct: 495 QQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAH 554

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGYREK+ARDIEIPNIRWEVFELMMRFIYTGSVD+TLDIAQDLL
Sbjct: 555 RICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVDITLDIAQDLL 614

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF+AISLRHTCIL+I+EH+DKL  
Sbjct: 615 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLGG 674

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPN 507
           +PGHS LIQ IIPEI NYF KA+TK N
Sbjct: 675 KPGHSQLIQHIIPEIQNYFVKAITKAN 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541384|ref|XP_003539157.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/506 (91%), Positives = 483/506 (95%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           EGGIPPLV LLEF DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML SED+AI
Sbjct: 198 EGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLCSEDAAI 257

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
           HYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC
Sbjct: 258 HYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 317

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
           KVHIVQRGAVRPLIEMLQS DVQL+EMSAFALGRLAQD HNQAGIAHNGGL+PLLKLLDS
Sbjct: 318 KVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDS 377

Query: 182 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 241
           KNGSLQHNAAFALYGLADNEDNV+DFIRVGG+Q+LQDGEFIVQATKDCVAKTLKRLEEKI
Sbjct: 378 KNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKI 437

Query: 242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 301
           HGRVLNHLLYLMRV+EK  QRRVAL LAHLCS DDQR IFID  GLELL+GLLGS NPKQ
Sbjct: 438 HGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPKQ 497

Query: 302 QLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHR 361
           QLDGAVAL KLANKA TLS VDAAPPSPTPQVYLG+Q+VNN TLSDVTFLVEG+RFYAHR
Sbjct: 498 QLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNVTLSDVTFLVEGKRFYAHR 557

Query: 362 ICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 421
           ICLLASSDAFRAMFDGGYREK+ARDIEIPNIRWEVFE MMRFIYTGSVD+TLDIAQDLLR
Sbjct: 558 ICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFEPMMRFIYTGSVDITLDIAQDLLR 617

Query: 422 AADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR 481
           AADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF+AISLRHTCIL+I+EH+DKLS +
Sbjct: 618 AADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLSGK 677

Query: 482 PGHSNLIQRIIPEIHNYFAKALTKPN 507
           PGHS+LIQRIIPEI NYF KALTK N
Sbjct: 678 PGHSHLIQRIIPEIQNYFVKALTKAN 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575815|ref|XP_003556032.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/513 (90%), Positives = 486/513 (94%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEGGIPPL  LL+F D KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+A
Sbjct: 195 MEGGIPPLAHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAA 254

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +HYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD
Sbjct: 255 VHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 314

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
           CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLD
Sbjct: 315 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLD 374

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
           SKNGSLQHNAAFALYGLADNEDNV+DFIRVGGVQ+LQDGEFIVQATKDCVAKTLKRLEEK
Sbjct: 375 SKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEK 434

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 300
           IHGRVLNHLLYLMR +EKG QR+VALALAHLCS DDQR IFID  GLELL+GLLGS++ K
Sbjct: 435 IHGRVLNHLLYLMRASEKGCQRQVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSK 494

Query: 301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
           QQLDGAVAL KLANKA TLS VDAAPPSPTPQVYLG+Q+VNNATLSDVTFLVEG+RFYAH
Sbjct: 495 QQLDGAVALSKLANKALTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAH 554

Query: 361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
           RICLLASSDAFRAMFDGGY EK+ARDIEIPNIRWEVFELMMRF+Y GSVDVTLDIA DLL
Sbjct: 555 RICLLASSDAFRAMFDGGYTEKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIALDLL 614

Query: 421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
           RAA+QYLLEGLKRLCEYTIAQDIS ENVSSMYELSEAF+AISLRH CIL+I+E FDKLS+
Sbjct: 615 RAANQYLLEGLKRLCEYTIAQDISPENVSSMYELSEAFNAISLRHACILFILEQFDKLSS 674

Query: 481 RPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL 513
           RPGHS LIQRIIPEI NYF KALTK N H+++L
Sbjct: 675 RPGHSLLIQRIIPEIRNYFVKALTKANSHDNQL 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480803|ref|XP_003610687.1| Speckle-type POZ protein-like protein [Medicago truncatula] gi|355512022|gb|AES93645.1| Speckle-type POZ protein-like protein [Medicago truncatula]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/506 (89%), Positives = 480/506 (94%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           EGGIPPLV LLEF DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED+AI
Sbjct: 192 EGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAI 251

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
           HYEAVGVIGNLVHSSPNIKK+V+ AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC
Sbjct: 252 HYEAVGVIGNLVHSSPNIKKDVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 311

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
           KVHIVQRGAVRPLIEMLQS DVQL+EMSAFALGRLAQD HNQAGIAH+GGLVPLLKLLDS
Sbjct: 312 KVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDS 371

Query: 182 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 241
           KNGSLQHNAAFALYGLA+NEDNV DFIR+GG+++ QDGEFI+QATKDCVAKTLKRLEEKI
Sbjct: 372 KNGSLQHNAAFALYGLAENEDNVPDFIRIGGIKRFQDGEFIIQATKDCVAKTLKRLEEKI 431

Query: 242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 301
           +GRVLNHLLYLMRV+EK  QRRVALALAHLCS DDQ+ IFID  GLELL+GLLGS+ PKQ
Sbjct: 432 NGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQKKIFIDHNGLELLIGLLGSSCPKQ 491

Query: 302 QLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHR 361
           QLDGAVALFKLANKA TLS VDAAPPSPTPQVYLG+Q+VNNATLSDVTFLVEG+RF+AHR
Sbjct: 492 QLDGAVALFKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFHAHR 551

Query: 362 ICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 421
           ICLLASSDAFRAMFDGGYREKDARDIEIPNIRW+VFELMMRFIYTGSVDVTL+IAQDLLR
Sbjct: 552 ICLLASSDAFRAMFDGGYREKDARDIEIPNIRWQVFELMMRFIYTGSVDVTLEIAQDLLR 611

Query: 422 AADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR 481
           AADQYLLEGLKRLCEYTIAQ +SLENVSSMYELSEAF+A SLRHTCIL+I+ HFDKLS  
Sbjct: 612 AADQYLLEGLKRLCEYTIAQHVSLENVSSMYELSEAFNATSLRHTCILFILGHFDKLSET 671

Query: 482 PGHSNLIQRIIPEIHNYFAKALTKPN 507
           PG+S+LIQR IP+I NYF  ALTK N
Sbjct: 672 PGNSDLIQRTIPDIRNYFVNALTKGN 697

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2150295	710	ARIA "ARM repeat protein inter	0.984	0.711	0.845	2.1e-228
TAIR|locus:2179842	737	ABAP1 "ARMADILLO BTB protein 1	0.986	0.686	0.664	2.7e-180
UNIPROTKB|E1BWB8	1025	E1BWB8 "Uncharacterized protei	0.296	0.148	0.354	4.8e-18
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.407	0.360	0.345	1.7e-17
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.541	0.480	0.276	2.8e-17
UNIPROTKB|F1SGS8	1025	ABTB2 "Uncharacterized protein	0.298	0.149	0.356	2.8e-17
FB|FBgn0264493	829	rdx "roadkill" [Drosophila mel	0.298	0.184	0.376	7.2e-17
MGI|MGI:2139365	1024	Abtb2 "ankyrin repeat and BTB	0.298	0.149	0.343	7.8e-17
UNIPROTKB|Q8N961	839	ABTB2 "Ankyrin repeat and BTB/	0.298	0.182	0.337	1.2e-16
UNIPROTKB|F1PQN7	1188	ABTB2 "Uncharacterized protein	0.296	0.127	0.341	1.2e-16

TAIR|locus:2150295 ARIA "ARM repeat protein interacting with ABF2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2204 (780.9 bits), Expect = 2.1e-228, P = 2.1e-228
 Identities = 427/505 (84%), Positives = 465/505 (92%)

Query:     1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
             +EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NKNQIVECNALPTLILML SED+A
Sbjct:   196 VEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNKNQIVECNALPTLILMLGSEDAA 255

Query:    61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
             IHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSSCC ESQREAALLLGQFA+TDSD
Sbjct:   256 IHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAALLLGQFASTDSD 315

Query:   121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
             CKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQD HNQAGIAH+GGL PLLKLLD
Sbjct:   316 CKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLD 375

Query:   181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
             S+NGSLQHNAAFALYGLADNEDNV+DFIRVGG+QKLQDGEFIVQATKDCV+KTLKRLEEK
Sbjct:   376 SRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDCVSKTLKRLEEK 435

Query:   241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDXXXXXXXXXXXXSTNPK 300
             IHGRVL HLLYLMR++EK +QRRVALALAHLCSP+DQRTIFID            S N K
Sbjct:   436 IHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQRTIFIDDNGLELLLGLLGSLNTK 495

Query:   301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
             QQLDGA AL+KLANK+  LS VDAAPPSPT +VYLG+Q+VNNATLSDVTFLVEGR FYAH
Sbjct:   496 QQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLSDVTFLVEGRTFYAH 555

Query:   361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
             RICLLASSDAFRAMFDGGYREKDARDIEIPNI+WEVFELMMRFIYTGSVD+T +I++DLL
Sbjct:   556 RICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSVDITNEISKDLL 615

Query:   421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
             RAADQYLLEGLKRLCEYTIAQDI+LE++  MYELSEAFHA+SLR  CI++I+EHFDKLS+
Sbjct:   616 RAADQYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIMFILEHFDKLSS 675

Query:   481 RPGHSNLIQRIIPEIHNYFAKALTK 505
              P  + L+QR IPEI  YF +ALTK
Sbjct:   676 MPWQNELVQRTIPEIREYFCRALTK 700

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
 Identities = 336/506 (66%), Positives = 414/506 (81%)

Query:     1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
             +EGGI PLVELL F D KVQRAAAGALRT++F+NDENK+QIVE NALPTL+LML+S+DS 
Sbjct:   223 VEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRNDENKSQIVELNALPTLVLMLQSQDST 282

Query:    61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
             +H EA+G IGNLVHSSP+IKKEV+ AGALQPVIGLLSS C E+QREAALL+GQFAA DSD
Sbjct:   283 VHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIGLLSSTCLETQREAALLIGQFAAPDSD 342

Query:   121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
             CKVHI QRGA+ PLI+ML+S D Q+ EMSAFALGRLAQD HNQAGIAH GG++ LL LLD
Sbjct:   343 CKVHIAQRGAITPLIKMLESSDEQVVEMSAFALGRLAQDAHNQAGIAHRGGIISLLNLLD 402

Query:   181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
              K GS+QHNAAFALYGLADNE+NVADFI+ GG+QKLQD  F VQ T+DCV +TLKRL+ K
Sbjct:   403 VKTGSVQHNAAFALYGLADNEENVADFIKAGGIQKLQDDNFTVQPTRDCVVRTLKRLQNK 462

Query:   241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDXXXXXXXXXXXXSTNPK 300
             IHG VLN LLYLMR AEK VQ R+ALALAHLC P D + IFID             ++ K
Sbjct:   463 IHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDPKDGKLIFIDNNGVEFLLELLYFSSNK 522

Query:   301 QQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAH 360
             QQ   + AL++LA KAT+ +  D+AP SPT QV+LG++FVNN T+SDVTFL++G++FYAH
Sbjct:   523 QQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKFVNNPTMSDVTFLIDGKQFYAH 582

Query:   361 RICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL 420
             +I L+ASSD FRAMFDG Y+E++A+++EIPNIRWEVFELMM+FIY+G +++   +A+DLL
Sbjct:   583 KIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYSGRINIAKHLAKDLL 642

Query:   421 RAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 480
              AADQYLLEGLKR CEYTIAQ+I L+N+  MYEL++ F+A +LR  C L+++EHF KLS+
Sbjct:   643 VAADQYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSS 702

Query:   481 RPGHSNLIQRIIPEIHNYFAKALTKP 506
             +   +  +++IIPEI +Y    LT+P
Sbjct:   703 QLWFAKFVKQIIPEIRSYMTDILTRP 728

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0031261 "DNA replication preinitiation complex" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:2000104 "negative regulation of DNA-dependent DNA replication" evidence=IMP

UNIPROTKB|E1BWB8 E1BWB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 57/161 (35%), Positives = 98/161 (60%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDA---RDIEIPN 391
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E D+   + +EI +
Sbjct:   834 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-TEHDSHGSKTVEISD 892

Query:   392 IRWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 447
             +++ +F+++M+++Y G   S+++ T DI + LL AA  + L+GL+R CE   AQ IS+EN
Sbjct:   893 MKYNIFKMLMQYLYYGGTESMEIPTTDILE-LLSAASLFQLDGLQRHCEILCAQTISMEN 951

Query:   448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
               S+Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   952 SVSIYKYAKIHNAPELAAFCEGFFLKHMSSLLEQDSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 243 (90.6 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 74/214 (34%), Positives = 108/214 (50%)

Query:     5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
             + P++ LL+ +D +VQRAA+ AL  LA  N +NK  IV    L  LI  + S +  +   
Sbjct:   108 LEPILFLLQSSDIEVQRAASAALGNLAV-NADNKVLIVALGGLAPLIKQMMSPNVEVQCN 166

Query:    65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
             AVG I NL     N K ++  +GAL P+I L  S     QR A   L     +D D +  
Sbjct:   167 AVGCITNLATHEDN-KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTHSD-DNRQQ 224

Query:   125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG-LVP-LLKLLDSK 182
             +V  GA+  L+++L S DV ++     AL  +A D  N+  +A     LV  L+ L+DS 
Sbjct:   225 LVNAGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDSS 284

Query:   183 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 216
                +Q  AA AL  LA +E    + +R  G+  L
Sbjct:   285 TPKVQCQAALALRNLASDEKYQLEIVRAKGLPPL 318

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 241 (89.9 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 81/293 (27%), Positives = 139/293 (47%)

Query:     3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
             G + PL +L +    +VQR A GAL  +   ++EN+ ++V   A+P L+ +L S D  + 
Sbjct:   167 GALIPLTKLAKSKHIRVQRNATGALLNMTH-SEENRKELVNAGAVPVLVSLLSSTDPDVQ 225

Query:    63 YEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             Y     + N+     N KK       L   ++ L+ S  S  + +A L L   A+ D+  
Sbjct:   226 YYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLAS-DTSY 284

Query:   122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
             ++ IV+ G +  L++++QS  + L   S   +  ++    N+  I   G L PL++LLD 
Sbjct:   285 QLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIHPLNEGLIVDAGFLKPLVRLLDY 344

Query:   182 KNGS-LQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQ----DGEFIVQAT-KDCVA--- 231
             K+   +Q +A   L  LA  +E N  +F   G V+K +    D    VQ+    C A   
Sbjct:   345 KDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKCKELALDSPVSVQSEISACFAILA 404

Query:   232 -KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 283
                + +L+  +   +L+ L+ +     + V    A ALA+LCS  +  T  I+
Sbjct:   405 LADVSKLD-LLEANILDALIPMTFSQNQEVSGNAAAALANLCSRVNNYTKIIE 456

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1SGS8 ABTB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 57/160 (35%), Positives = 98/160 (61%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA-MFDGGYREKDA-RDIEIPNI 392
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+  M +   ++ D+ + IEI ++
Sbjct:   834 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDM 893

Query:   393 RWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV 448
             ++ +F++MMR++Y G   S+D+ T DI + LL AA  + L+ L+R CE   +Q +S+E+ 
Sbjct:   894 KYHIFQMMMRYLYYGGTESMDIPTGDILE-LLSAASLFQLDALQRHCEILCSQTLSVESA 952

Query:   449 SSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
              S Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   953 VSTYKYAKIHNAPELALFCEGFFLKHMKALLEQDSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

FB|FBgn0264493 rdx "roadkill" [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 58/154 (37%), Positives = 82/154 (53%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 394
             LG+ F +N   SDVT  V GR F AH+  L A SD F AMF+    E+    + I ++  
Sbjct:   645 LGNLF-DNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDH 703

Query:   395 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL 454
             EV + M+RFIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+E  +    L
Sbjct:   704 EVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLIL 763

Query:   455 SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
             ++   A  L+   I +I  H   +    G  N+I
Sbjct:   764 ADLHSADQLKAQTIDFINTHATDVMETSGWQNMI 797

GO:0007349 "cellularization" evidence=IMP

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

GO:0030162 "regulation of proteolysis" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IGI

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0042308 "negative regulation of protein import into nucleus" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

MGI|MGI:2139365 Abtb2 "ankyrin repeat and BTB (POZ) domain containing 2" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 7.8e-17, P = 7.8e-17
 Identities = 55/160 (34%), Positives = 99/160 (61%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA-MFDGGYREKDA-RDIEIPNI 392
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+  M +   ++ D+ + IEI +I
Sbjct:   833 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDI 892

Query:   393 RWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV 448
             ++ +F+++M+++Y G   S+++ T DI Q LL AA+ + L+ L+R CE   +Q +S+E+ 
Sbjct:   893 KYHIFQMLMQYLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESA 951

Query:   449 SSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
              + Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   952 VNTYKYAKIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 991

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|Q8N961 ABTB2 "Ankyrin repeat and BTB/POZ domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 54/160 (33%), Positives = 98/160 (61%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA-MFDGGYREKDA-RDIEIPNI 392
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+  M +   ++ D+ + IEI ++
Sbjct:   648 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDM 707

Query:   393 RWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV 448
             ++ +F++MM+++Y G   S+++ T DI + LL AA  + L+ L+R CE   +Q +S+E+ 
Sbjct:   708 KYHIFQMMMQYLYYGGTESMEIPTTDILE-LLSAASLFQLDALQRHCEILCSQTLSMESA 766

Query:   449 SSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
              + Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   767 VNTYKYAKIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 806

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PQN7 ABTB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 55/161 (34%), Positives = 95/161 (59%)

Query:   335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD---ARDIEIPN 391
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E+D   ++ IEI +
Sbjct:   997 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-SEQDGNGSKTIEISD 1055

Query:   392 IRWEVFELMMRFIYTGSVDVTLDI-AQD---LLRAADQYLLEGLKRLCEYTIAQDISLEN 447
             +++ +F++MM+++Y G  +  +DI A D   LL AA  + L+ L+R CE   +Q +S+E+
Sbjct:  1056 MKYHIFQMMMQYLYYGGTEA-MDIPAADVLELLSAASLFQLDALQRHCEILCSQTLSVES 1114

Query:   448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488
               S Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:  1115 AVSTYKYAKIHNAPELALFCEAFFLKHMKALLEQDSFRQLI 1155

GO:0046982 "protein heterodimerization activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DHT4	ARIA_ARATH	No assigned EC number	0.8653	0.8713	0.6295	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.810.1 hypothetical protein (656 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
pfam00651	101	pfam00651, BTB, BTB/POZ domain	5e-25
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-16
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-13
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-11
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-07
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	6e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	8e-06
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.001
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	0.001

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 98.8 bits (247), Expect = 5e-25
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 394
           L +    N  L DVT +V  + F+AH+  L A S  F+A+F G    +    I + ++  
Sbjct: 1   LNELR-ENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVE----ITLEDVSP 55

Query: 395 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEY 437
           E FE ++ FIYTG +++T +   DLL  AD+  +  L   CE 
Sbjct: 56  EDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 33/97 (34%), Positives = 58/97 (59%)

Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
           DVT +V G++F+AH+  L A S  F+A+F   ++E D  +I + ++  E F  ++ F+YT
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60

Query: 407 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 443
           G +D+  +  ++LL  AD   + GL  LCE  + + +
Sbjct: 61  GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 42/115 (36%), Positives = 61/115 (53%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            GG+P LV LL  +D  VQR AA AL  L+  N++N   +VE   LP L+ +L+SED  +
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 116
              A+  + NL     + K  VL AG +  ++ LL S   + Q+ A   L   A+
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 82  EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 141
            V+ AG L  ++ LLSS     QREAA  L   +A ++D    +V+ G +  L+++L+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 142 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFAL 194
           D ++ + + +AL  LA    +   I    G VP L+ LLDS N  +Q NA  AL
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 33/119 (27%), Positives = 58/119 (48%)

Query: 40  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 99
            +++   LP L+ +L S D  +  EA   + NL   + +  + V+ AG L  ++ LL S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 100 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
             E  + A   L   AA   D K+ +++ G V  L+ +L S +  +++ +  AL  LA 
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 348 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTG 407
           +  +  G     H+I L +SS+ F+ MF   ++E +   I + NI ++ F  ++++IYTG
Sbjct: 14  IIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENE---INL-NIDYDSFNEVIKYIYTG 69

Query: 408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAIS----- 462
            +++T +  +D+L  A+  +++ L  LC   I + I   N   +Y  S  F+        
Sbjct: 70  KINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSF-FYGCKKLYSA 128

Query: 463 -----LRHTCILYIMEHFDKLST 480
                  +  ++Y    F  LS 
Sbjct: 129 AYNYIRNNIELIYNDPDFIYLSK 151

Length = 534

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 69/328 (21%), Positives = 139/328 (42%), Gaps = 29/328 (8%)

Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P  VE + E     +Q  AA AL  +A    +    +V+  A+P  I +L S +  +
Sbjct: 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDV 173

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ--REAALLLGQFAATDS 119
             +AV  +GN+   S   +  VL  GAL+P++GLL S        R A   L       +
Sbjct: 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233

Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKL 178
                     A+  L +++ S D ++   + +A+  L+   + +     + G+   L++L
Sbjct: 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL 293

Query: 179 LDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK----- 232
           L  ++  +Q  A  ++  +   ++D     I  G ++  +    ++ + K+ + K     
Sbjct: 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRS---LLSSPKENIRKEACWT 350

Query: 233 -------TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-----PDDQRTI 280
                    ++++  I   ++  L++L+  AE  +++    A+++  S     PD  R  
Sbjct: 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-Y 409

Query: 281 FIDGGGLELLLGLL-GSTN--PKQQLDG 305
            +  G ++ L  LL    N   +  LD 
Sbjct: 410 LVSQGFIKPLCDLLDVVDNKIIEVALDA 437

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 5    IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI--VECNALPTLILMLRSEDSAIH 62
            + PLVE+L       Q AA GAL  L+  N      I  VE NAL  L  +L S+ S   
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334

Query: 63   YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
             E    +  ++ ++  I+    AA  ++P+I LL S  S +Q      L +    D +  
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL--LDDEQL 1392

Query: 123  VHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159
              +V   GAV PL+ ++   +  L E +  AL +L +D
Sbjct: 1393 AELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKD 1430

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 9/182 (4%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALR--TLAFKNDENKNQI-VECNALPTLILMLRS--- 56
           G IPPL+ LL+    + Q+AAA A+   +    +D   ++I      +P+L   L+    
Sbjct: 99  GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158

Query: 57  EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 116
           +D  +     G + NL  S+       L AG +  ++ LLSS  S++Q  AA LL +   
Sbjct: 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM 218

Query: 117 TDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVP 174
                   ++  GAV+ L+++L Q  +V +R  +A AL  L +Q    +  IA  GG +P
Sbjct: 219 AFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGG-IP 277

Query: 175 LL 176
            L
Sbjct: 278 AL 279

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 54/240 (22%)

Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------E 57
           G+  L+ LL  +  + Q  A   L  L  + DE+K  I     +P L+ +L +      E
Sbjct: 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506

Query: 58  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF--- 114
           DSA       V+ NL   S +I+  V +AGA+  ++ LL +   + Q  AA  L +    
Sbjct: 507 DSAT------VLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560

Query: 115 --AAT-----------DSDCKVH----------------IVQRG-----AVRPLIEMLQS 140
             AAT             + KVH                +V+ G     A+R LI++L S
Sbjct: 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS 620

Query: 141 PDVQLREMSAFALGRL---AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 197
              + +E +A  L  +    QD+           + P +KLL +   ++   +A AL  L
Sbjct: 621 SKEETQEKAASVLADIFSSRQDLCESLATDEI--INPCIKLLTNNTEAVATQSARALAAL 678

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 9/196 (4%)

Query: 8    LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
            LV +L       + +AA AL+ L F  +  ++  +   A+  L+ ML   ++    E   
Sbjct: 1237 LVAVLRLGSRSARYSAARALQEL-FSAEHIRDSELARQAVQPLVEML---NTGSESEQHA 1292

Query: 68   VIGNLVH-SSPNIKKEVLAA----GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
             IG L+  SS N  K +  A     AL+ +  +LSS  S   +E A  L +   T++  +
Sbjct: 1293 AIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIR 1352

Query: 123  VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 182
                    + PLI +L S     +E    AL RL  D      +A +G +VPL+ L+   
Sbjct: 1353 STPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGT 1412

Query: 183  NGSLQHNAAFALYGLA 198
            N  L   A  AL  L 
Sbjct: 1413 NYVLHEAAISALIKLG 1428

Length = 2102

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 42/236 (17%)

Query: 84  LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 143
           LA  A   ++ LL       +  AA+ LG+  + +           AV  L E+L   D 
Sbjct: 40  LAPEAADELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDP 88

Query: 144 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED 202
           ++R+ +A ALG L               + PL++LL+  +N  ++  AA AL  L D E 
Sbjct: 89  RVRDAAADALGELGDPE----------AVPPLVELLENDENEGVRAAAARALGKLGD-ER 137

Query: 203 NVADFIRVGGVQKLQDGEFIVQATKDCVAKT------LKRLEEKIHGRVLNHLLYLMRVA 256
            +   +     + LQD +    A     A         + L E      +  L+ L+   
Sbjct: 138 ALDPLL-----EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE 192

Query: 257 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 312
           +  V+R  A AL  L S + +          +LL+  L   + + +    +AL ++
Sbjct: 193 DADVRRAAASALGQLGSENVE--------AADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 34 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74
          + ENK  ++E  A+P L+ +L S D  +  EA   + NL  
Sbjct: 1  SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 34 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74
          +DENK  +V+   LP L+ +L+SED  +  EA   + NL  
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 45  NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 104
           +AL TLI +L S       +A  V+ ++  S  ++ + +     + P I LL++      
Sbjct: 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVA 668

Query: 105 REAALLLGQ-FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163
            ++A  L     +   + KV      A++PLI++ +S  +++ E +  AL  L  D    
Sbjct: 669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-PEV 727

Query: 164 AGIAHNGGLV-PLLKLLDSKNGSLQ--HNAAFALYGL 197
           A  A    ++ PL ++L  + G+L+   NAA AL  L
Sbjct: 728 AAEALAEDIILPLTRVL--REGTLEGKRNAARALAQL 762

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +   +P L +L+   D +V   A  A+  L+   +E    +++      L+ +L  E + 
Sbjct: 241 ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK 300

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  +GN+V  S +  + ++  GAL+    LLSS     ++EA   +    A +++
Sbjct: 301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLL 176
               ++    + PLI +L S + ++++ + +A+        N+  I       G + PL 
Sbjct: 361 QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420

Query: 177 KLLD 180
            LLD
Sbjct: 421 DLLD 424

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 45  NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 104
            A+P L+ +LRS        A  V+G L     +++ +VL  G + P++ LL S  +E+Q
Sbjct: 58  QAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQ 116

Query: 105 REAALLLGQFAATDSDCKVHI-----VQRGAVRPLIEMLQSPDVQLREMSAF---ALGRL 156
           + AA  +  +A +      H+        G V  L + LQ  + Q + +      AL  L
Sbjct: 117 KAAAEAI--YAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174

Query: 157 AQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
                   +     GG+  L+KLL S N   Q NAA  L
Sbjct: 175 CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL 213

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS 296
           E  I    L  L+ L+  +++ VQR  A AL++L +  +D     ++ GGL  L+ LL S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 297 TNPKQQLDGAVALFKLA 313
            + +       AL  LA
Sbjct: 61  EDEEVVKAALWALRNLA 77

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 35/137 (25%)

Query: 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ 224
           +   GGL  L+ LL S + ++Q  AA+AL  L+    DN+   +  GG+           
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP---------- 52

Query: 225 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID 283
                                   L+ L++  ++ V +    AL +L + P+D + I ++
Sbjct: 53  -----------------------ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89

Query: 284 GGGLELLLGLLGSTNPK 300
            GG+  L+ LL S+N  
Sbjct: 90  AGGVPKLVNLLDSSNED 106

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 60/253 (23%)

Query: 5    IPPLVELLEFTDTKVQRA--AAGALRTLAFKNDENKNQIVECNALPTLI--LMLRSEDSA 60
            IP LV+LL+    +      A G L  LA  +D NK  + E  AL  L   L L  +DS 
Sbjct: 1148 IPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDS- 1206

Query: 61   IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA-LLLGQFAAT-- 117
                A  ++  L  SSP +++   A GA+  ++ +L      ++  AA  L   F+A   
Sbjct: 1207 TEEAASELLRIL-FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHI 1265

Query: 118  -DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI---------- 166
             DS+     + R AV+PL+EML +     +  +  AL +L+    ++A            
Sbjct: 1266 RDSE-----LARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALE 1320

Query: 167  -----------------------------------AHNGGLVPLLKLLDSKNGSLQHNAA 191
                                               A    + PL+ LL S++ + Q    
Sbjct: 1321 NLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGV 1380

Query: 192  FALYGLADNEDNV 204
             AL  L D+E   
Sbjct: 1381 CALDRLLDDEQLA 1393

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 2  EGGIPPLVELLEFTDTKVQRAAAGALRTLA 31
           G +PPLV+LL   D +VQ  AA AL  LA
Sbjct: 11 AGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 2  EGGIPPLVELLEFTDTKVQRAAAGALRTLAF 32
           GG+P LVELL+  D +V + AA AL  L+ 
Sbjct: 11 AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 118 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157
             + K  +++ GAV PL+++L SPD +++E +A+AL  LA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 33/226 (14%)

Query: 46  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105
           A+P L  +L  ED  +   A   +G L               A+ P++ LL +  +E  R
Sbjct: 75  AVPLLRELLSDEDPRVRDAAADALGELGDPE-----------AVPPLVELLENDENEGVR 123

Query: 106 E-AALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163
             AA  LG+     + D  +  +Q          L +  + +R  +A ALG     + + 
Sbjct: 124 AAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----LGDP 179

Query: 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 223
             I        L++LL+ ++  ++  AA AL  L       AD +    V+ L D    V
Sbjct: 180 EAIP------LLIELLEDEDADVRRAAASALGQLGSENVEAADLL----VKALSDESLEV 229

Query: 224 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 269
           +         L  +        ++ L   +   +  +    A AL 
Sbjct: 230 RKA---ALLALGEIG---DEEAVDALAKALEDEDVILALLAAAALG 269

Length = 335

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 22/191 (11%)

Query: 10  ELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 65
           ELL++     D + +     A+  LA K   +    +       L+ +L    S +  E 
Sbjct: 341 ELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCI-----DVLLELLSLAGSYVVDEI 395

Query: 66  VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVH 124
           V VI +++   P +++       L+ +  LL    S   R AAL +LG++     +    
Sbjct: 396 VEVIRDIIRKYPELREY-----ILEHLCELLEDIESPEARAAALWILGEYGELIPNSPSD 450

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFA-LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 183
           +++         +L+S  V+L  ++A   L     D   Q  I     +V  L   DS +
Sbjct: 451 LLRSILEVF---VLESLKVRLALLTALVKLSLTFPDEEVQNLIV---QVVLSLATQDSSD 504

Query: 184 GSLQHNAAFAL 194
             L+  A   L
Sbjct: 505 LELRDRAVEYL 515

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PHA02713	557	hypothetical protein; Provisional	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.95
PHA02790	480	Kelch-like protein; Provisional	99.95
PHA03098	534	kelch-like protein; Provisional	99.95
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.81
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.81
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.79
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.74
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.69
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
PRK09687	280	putative lyase; Provisional	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
PRK09687	280	putative lyase; Provisional	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.46
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.46
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.37
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.36
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.3
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.27
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.25
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.24
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.12
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.12
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.1
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.1
KOG0511	516	consensus Ankyrin repeat protein [General function	99.1
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	99.08
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.05
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.05
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.01
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.0
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.99
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.93
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.92
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.9
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.89
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.84
PTZ00429	746	beta-adaptin; Provisional	98.83
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.82
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.79
PTZ00429	746	beta-adaptin; Provisional	98.78
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.72
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.7
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.64
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.56
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.51
TIGR02270	410	conserved hypothetical protein. Members are found	98.5
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.49
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.45
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.44
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.42
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.42
KOG2716	230	consensus Polymerase delta-interacting protein PDI	98.41
COG5369	743	Uncharacterized conserved protein [Function unknow	98.4
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.38
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.34
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.33
TIGR02270	410	conserved hypothetical protein. Members are found	98.32
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.3
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.27
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.25
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.19
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.17
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.15
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.14
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.14
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.13
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.13
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.11
PF05536	543	Neurochondrin: Neurochondrin	98.1
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.1
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.08
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.08
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.08
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.05
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.01
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.99
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.98
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.98
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.98
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.97
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.95
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.94
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	97.93
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.92
COG5369	743	Uncharacterized conserved protein [Function unknow	97.91
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.9
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.88
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.87
PF05536	543	Neurochondrin: Neurochondrin	97.83
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.82
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.81
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.79
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.77
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.77
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.75
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.73
KOG3473	112	consensus RNA polymerase II transcription elongati	97.68
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.63
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.6
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.59
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.57
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.53
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	97.52
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.51
KOG3036	293	consensus Protein involved in cell differentiation	97.5
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.5
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.47
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.46
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.43
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.4
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	97.4
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.39
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.37
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.35
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.32
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.29
KOG0567	289	consensus HEAT repeat-containing protein [General	97.26
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.26
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.22
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.22
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.21
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.18
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	97.15
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.12
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.08
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.05
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.05
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.04
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.99
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.97
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.96
KOG3036	293	consensus Protein involved in cell differentiation	96.92
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.91
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.78
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.78
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.74
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.7
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.67
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.66
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.61
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.57
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.53
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.49
KOG0567	289	consensus HEAT repeat-containing protein [General	96.48
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	96.48
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.46
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.44
KOG2714	465	consensus SETA binding protein SB1 and related pro	96.4
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.4
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.38
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.33
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.25
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.23
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.09
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.05
PF05004	309	IFRD: Interferon-related developmental regulator (	96.05
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.94
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.92
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.92
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.92
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.89
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.88
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.83
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.75
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.63
PF05004	309	IFRD: Interferon-related developmental regulator (	95.47
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.43
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.29
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.28
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.23
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.17
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.13
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.09
KOG0511	516	consensus Ankyrin repeat protein [General function	94.98
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.96
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	94.78
KOG2025	892	consensus Chromosome condensation complex Condensi	94.76
KOG2715	210	consensus Uncharacterized conserved protein, conta	94.69
KOG2956	516	consensus CLIP-associating protein [General functi	94.66
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.63
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.58
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.55
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.45
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.44
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	94.41
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.38
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.37
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.34
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.26
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.23
KOG1778	319	consensus CREB binding protein/P300 and related TA	94.22
KOG1243	690	consensus Protein kinase [General function predict	94.01
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.95
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.88
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.76
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.72
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.65
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.65
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.59
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	93.51
KOG2025	892	consensus Chromosome condensation complex Condensi	93.23
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.17
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	93.13
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	93.08
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.0
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.99
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.93
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.86
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.75
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.66
COG5116	926	RPN2 26S proteasome regulatory complex component [	92.59
KOG0414	1251	consensus Chromosome condensation complex Condensi	92.56
PRK14707	2710	hypothetical protein; Provisional	92.46
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.39
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.27
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.16
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.1
COG5098	1128	Chromosome condensation complex Condensin, subunit	91.92
KOG2956	516	consensus CLIP-associating protein [General functi	91.82
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.76
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.54
KOG2933	334	consensus Uncharacterized conserved protein [Funct	91.3
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.1
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.38
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	90.23
KOG1243	690	consensus Protein kinase [General function predict	89.58
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	89.5
KOG2137	700	consensus Protein kinase [Signal transduction mech	89.06
KOG2933	334	consensus Uncharacterized conserved protein [Funct	88.94
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	88.73
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.73
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.12
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.07
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.72
KOG0301	745	consensus Phospholipase A2-activating protein (con	87.69
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	87.62
KOG2676	478	consensus Uncharacterized conserved protein [Funct	87.44
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.34
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.02
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	86.7
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	86.5
PRK14707	2710	hypothetical protein; Provisional	86.4
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.14
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.14
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	85.92
KOG2137	700	consensus Protein kinase [Signal transduction mech	85.73
COG5656	970	SXM1 Importin, protein involved in nuclear import	84.78
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.45
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	84.44
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.23
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	83.8
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.14
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	82.77
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.65
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	81.77
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.47
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.2
KOG0301	745	consensus Phospholipase A2-activating protein (con	81.2
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.52
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	80.4

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-33  Score=267.06  Aligned_cols=318  Identities=23%  Similarity=0.315  Sum_probs=276.8

Q ss_pred             CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      .|.+|.+|+.|.. .++.+|.+|+|+|.|++.++.+....+++.|++|.++.++.+++.++++.|+|+|+|++.+++.+|
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence            5899999999974 569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           81 KEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +.++..|+++.|+.++...+. ...+.+.|+|.|+|++..+....-.-..++|.|..++.+.|+++...|+|+|++|+.+
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999998775 7889999999999988743333333457899999999999999999999999999977


Q ss_pred             cccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH-HHhhcCcccccchhhhhhhh--H--HHH---
Q 010291          160 MHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQAT--K--DCV---  230 (513)
Q Consensus       160 ~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~i~~L~~~~~~~~~~--~--~~~---  230 (513)
                      ...+ ..+++.|.++.|+.+|.+.+..++..|+++++|++...+.+.+ ++..|+++.|..........  +  .||   
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence            7654 5677899999999999999999999999999999986666655 45889999887655533222  1  333   


Q ss_pred             ---HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhhcCCCcchhhhH
Q 010291          231 ---AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDG  305 (513)
Q Consensus       231 ---~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  305 (513)
                         +++.++++.+.+.+++|.|+.+|++.+...|+.|+|+++|++.+..  .-..+++.|.|+.|..+|...+..+...+
T Consensus       348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~  427 (514)
T KOG0166|consen  348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA  427 (514)
T ss_pred             HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence               4456788999999999999999999999999999999999987644  45589999999999999988888888888


Q ss_pred             HHHHHHhhhccccc
Q 010291          306 AVALFKLANKATTL  319 (513)
Q Consensus       306 ~~~L~~l~~~~~~~  319 (513)
                      ..++.++....+..
T Consensus       428 Ld~l~nil~~~e~~  441 (514)
T KOG0166|consen  428 LDGLENILKVGEAE  441 (514)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999988765544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=8.5e-33  Score=242.49  Aligned_cols=316  Identities=21%  Similarity=0.280  Sum_probs=268.3

Q ss_pred             CCChhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +|++|.++++| ++...-.+.+|+|+|.|+++|.......+++.|++|.++++|.+.+.++++.++|+|+|++.+++.+|
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            69999999999 55566789999999999999988888889999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           81 KEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      +.+++.|++.+++.++.++..  .+.+.+.|+|+|||++..+....-.-...+|.|.+++.+.|+++...|+|++..|+.
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            999999999999999987655  778999999999998765544444444689999999999999999999999999998


Q ss_pred             ccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH-HHhhcCcccccchhhhhh---hhHHHH---
Q 010291          159 DMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQ---ATKDCV---  230 (513)
Q Consensus       159 ~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~i~~L~~~~~~~~---~~~~~~---  230 (513)
                      ++..+ ..+++.|....|+++|.+++..++..|++.++|+....+.+.+ ++..|+++.+..+..+-+   ....||   
T Consensus       273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS  352 (526)
T COG5064         273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS  352 (526)
T ss_pred             CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence            77654 5577788888899999999999999999999999986655554 457887776544322211   122455   


Q ss_pred             ---HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC----CCcceeeecCCchHHHHhhhcCCCcchhh
Q 010291          231 ---AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DDQRTIFIDGGGLELLLGLLGSTNPKQQL  303 (513)
Q Consensus       231 ---~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  303 (513)
                         +++..+++.+.+.+.+|+|+++|.+.+..+++.|||++.|..++    |+.-+.+++.|+|..|..+|.-.+..+-+
T Consensus       353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie  432 (526)
T COG5064         353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE  432 (526)
T ss_pred             ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence               56778999999999999999999999999999999999999875    34456889999999999999987777777


Q ss_pred             hHHHHHHHhhhccc
Q 010291          304 DGAVALFKLANKAT  317 (513)
Q Consensus       304 ~a~~~L~~l~~~~~  317 (513)
                      -+..++.++....+
T Consensus       433 v~LD~~eniLk~Ge  446 (526)
T COG5064         433 VALDAIENILKVGE  446 (526)
T ss_pred             hhHHHHHHHHhhhh
Confidence            77888888775433

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=9.4e-30  Score=276.02  Aligned_cols=316  Identities=20%  Similarity=0.189  Sum_probs=274.9

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      +|+++.|+.+|...+.++|..++++|.+++.++.+.+..+.+.|+++.|+++|++++..+++.|+++|++++.++++++.
T Consensus       403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46889999999999999999999999999998899999999999999999999999999999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      .+.+.|+++.|+++|.+++.++++.|+|+|.|++.++++.+..+.+.|++++|+++|++++++.++.++++|.|+..+.+
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999998766666666688999999999999999999999999999974322


Q ss_pred             cc--------------------------------------hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-Ccc
Q 010291          162 NQ--------------------------------------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NED  202 (513)
Q Consensus       162 ~~--------------------------------------~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~  202 (513)
                      ..                                      ......|+++.|++++.++++.+++.|+++|.+++. +++
T Consensus       563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            11                                      001135899999999999999999999999999987 555


Q ss_pred             hHHHHHhhcCcccccchhhhhhh-hHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291          203 NVADFIRVGGVQKLQDGEFIVQA-TKDCVAKT---------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       203 ~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~  272 (513)
                      .+..++..|++++++....+... ...-.+.+         -.+...+.+.|++++|+.+|++++.+++..|+.+|.|++
T Consensus       643 ~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl  722 (2102)
T PLN03200        643 LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL  722 (2102)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            57778899999999875553221 11111111         233445678899999999999999999999999999999


Q ss_pred             CCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          273 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       273 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ..++.+..+.+.|+++.|++++++++++.|+.|+++|.+|+.+.+
T Consensus       723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            999988888899999999999999999999999999999997665

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-29  Score=240.60  Aligned_cols=313  Identities=22%  Similarity=0.333  Sum_probs=264.2

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .+..++.+.++++..+..+...+..+..... .-...++..|+++.++.+|. +.++.++..|+|+|.|++.++.+.-+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            4567777888999999999999998865311 22344555699999999998 667999999999999999999999899


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMH  161 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~  161 (513)
                      +++.|+++.++.++.+++.++++.|.|+|+|++.+++.+|+.+++.|++++|+.++..++. ....++.|+|.|||++..
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999998865 788999999999998885


Q ss_pred             cchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhhhh---------hhHHHH
Q 010291          162 NQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQ---------ATKDCV  230 (513)
Q Consensus       162 ~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~---------~~~~~~  230 (513)
                      ....+ .-...++.|..++.+.|+.+...|+|++++|+.++. ....+++.|+++.|+++.....         ..-..+
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            44433 335788899999999999999999999999997554 4455568999998876433211         111223


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHH
Q 010291          231 AKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA  308 (513)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  308 (513)
                      +++-.+.+.+.+.++++.|..++.. +...++..|||+++|++.+.. ..+.++++|.+|.|+.++++.+-++|++|+|+
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            4556778899999999999999994 666699999999999987654 67789999999999999999999999999999


Q ss_pred             HHHhhhccc
Q 010291          309 LFKLANKAT  317 (513)
Q Consensus       309 L~~l~~~~~  317 (513)
                      +.|++....
T Consensus       388 IsN~ts~g~  396 (514)
T KOG0166|consen  388 ISNLTSSGT  396 (514)
T ss_pred             HHhhcccCC
Confidence            999886533

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-28  Score=218.80  Aligned_cols=286  Identities=27%  Similarity=0.401  Sum_probs=261.8

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|++.++.++-++.+..+|.++..+|.++.. ..++|..++..|++|.|+.++++.++++|..++.++++++.+ ...|+
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk  243 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARK  243 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHH
Confidence            6899999998889999999999999999997 899999999999999999999999999999999999999987 67788


Q ss_pred             HHHhCC--ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      .+.+.+  .++.|+.+++++++.++-.|..+|+|++++ .+.+..+++.|.+|.++++++++..........+++|++.+
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence            899888  999999999999999999999999999855 66677899999999999999999878888889999999999


Q ss_pred             cccchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291          160 MHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL  237 (513)
Q Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~  237 (513)
                      +-+...+++.|.+.+|+.+|+.++ .+++.+|..+|+||+. ++.+...+.+.|                          
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg--------------------------  376 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG--------------------------  376 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC--------------------------
Confidence            999999999999999999999877 5599999999999997 666666665544                          


Q ss_pred             HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                             .++.+..++.++..++|.....++..|+..+..+..+.+.|.++.|+.+..+.+.+++..++.+|.|++.+..
T Consensus       377 -------Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  377 -------AIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             -------chHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence                   6778889999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             cccccC
Q 010291          318 TLSSVD  323 (513)
Q Consensus       318 ~~~~i~  323 (513)
                      ++..+.
T Consensus       450 ~Yarvi  455 (550)
T KOG4224|consen  450 HYARVI  455 (550)
T ss_pred             HHHHHH
Confidence            776554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.8e-29  Score=220.86  Aligned_cols=309  Identities=24%  Similarity=0.296  Sum_probs=272.3

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      .+++.-++++.++.++..|..+++|++- +.+++..+++.+++..|+.-+.+++.++|..+++|+++++.. ..++..+.
T Consensus        87 ~epvl~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA  164 (550)
T KOG4224|consen   87 NEPVLALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIA  164 (550)
T ss_pred             hhHHHHHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhh
Confidence            5677888999999999999999999998 789999999999999999888888899999999999999987 77788999


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      ..|++.++.++-++.+..++.++..+|.|++ +..++++.++..|.+|.|+++++++|+++++.|+.++.|++.+...|+
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            9999999999888899999999999999997 567889999999999999999999999999999999999999999999


Q ss_pred             hhHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH--HHHHH---
Q 010291          165 GIAHNG--GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK--TLKRL---  237 (513)
Q Consensus       165 ~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~---  237 (513)
                      .+.+.+  .++.|+.++.+++++++..|..+|.+++.+.+.+.+++++|++|.++++..+. ..+..++.  ++.++   
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccc
Confidence            999987  89999999999999999999999999999999999999999999998866322 22222211  23233   


Q ss_pred             ----HHHhhhhhHHHHHHHHHHhhc-chhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHH
Q 010291          238 ----EEKIHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  311 (513)
Q Consensus       238 ----~~~~~~~~l~~Lv~lL~~~~~-~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  311 (513)
                          ..+.+.|++.+|+.+|+-++. ++|..|..+|.||+. ...++..+.+.|+||.+..++.+..-.+|.+...++..
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence                224788999999999998655 499999999999986 56688899999999999999999999999988888888


Q ss_pred             hhhccc
Q 010291          312 LANKAT  317 (513)
Q Consensus       312 l~~~~~  317 (513)
                      |+-...
T Consensus       403 Lal~d~  408 (550)
T KOG4224|consen  403 LALNDN  408 (550)
T ss_pred             HHhccc
Confidence            876533

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=2.1e-29  Score=221.26  Aligned_cols=316  Identities=20%  Similarity=0.277  Sum_probs=261.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      -+|.+.+.|.|++-+.+..|..-++.+.+. ...-...+++.|++|.++++|. .+..-.+..|+|+|.|++.++....+
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            367888888899999999999888877652 2333567889999999999995 66777888999999999999888778


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~  159 (513)
                      .+++.|++|.++++|.+...++++.+.|+|+|++.+++.+++.+.+.|++++++.++.++  +..+..++.|+|.|||++
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence            889999999999999999999999999999999999999999999999999999999886  458889999999999987


Q ss_pred             cccchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH-HHHhhcCcccccchhhhhh----hhH-----H
Q 010291          160 MHNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA-DFIRVGGVQKLQDGEFIVQ----ATK-----D  228 (513)
Q Consensus       160 ~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~g~i~~L~~~~~~~~----~~~-----~  228 (513)
                      ....... .-..+++.|.+++.+.|+++...|+|++..|+..+..+. .++..|....|+++.....    +..     .
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            6554332 224578889999999999999999999999998665444 4557787777766443211    111     1


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHH
Q 010291          229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAV  307 (513)
Q Consensus       229 ~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  307 (513)
                      .+.++-.+.+.+++.|+++.+..+|.++...+|+.|||+++|++.+.. .-+.+++.+.+|.|+.+|.+.+-.++++|||
T Consensus       312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW  391 (526)
T COG5064         312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW  391 (526)
T ss_pred             eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            112233455777899999999999999988999999999999987654 6678899999999999999999999999999


Q ss_pred             HHHHhhhccccc
Q 010291          308 ALFKLANKATTL  319 (513)
Q Consensus       308 ~L~~l~~~~~~~  319 (513)
                      ++.|...+...+
T Consensus       392 AisNatsgg~~~  403 (526)
T COG5064         392 AISNATSGGLNR  403 (526)
T ss_pred             HHHhhhccccCC
Confidence            999988775544

>PHA02713 hypothetical protein; Provisional

Probab=99.96  E-value=1e-28  Score=249.53  Aligned_cols=159  Identities=19%  Similarity=0.314  Sum_probs=147.9

Q ss_pred             hhcccCCCcccEEEEec-CeeehhhHHHHhhcCHHHHHhccCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCccccCHH
Q 010291          337 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  414 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  414 (513)
                      ..++.++.+|||++.++ |+.|+|||.||+++|+||++||+++++|++ +.+|.|+++++++|+.+|+|+|||.  ++.+
T Consensus        17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~   94 (557)
T PHA02713         17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSM   94 (557)
T ss_pred             HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHH
Confidence            46788899999999998 899999999999999999999999999864 7899999999999999999999997  6899


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHH
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE  494 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~  494 (513)
                      ++.+++.+|++||++.+++.|++||.+.++++||+.++.++..+.+.+|.+.|.+||.+||.++.++++|.+|+.+.   
T Consensus        95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~---  171 (557)
T PHA02713         95 NVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEI---  171 (557)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHH---
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999996554   


Q ss_pred             HHHHHH
Q 010291          495 IHNYFA  500 (513)
Q Consensus       495 l~~~l~  500 (513)
                      +.++|.
T Consensus       172 l~~lL~  177 (557)
T PHA02713        172 LFDIIS  177 (557)
T ss_pred             HHHHhc
Confidence            444444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=5.3e-27  Score=254.85  Aligned_cols=314  Identities=23%  Similarity=0.258  Sum_probs=264.0

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|++|.|+++|+++++.+|..|++.|++++.++++++..+++.|++|.|+++|.+++..+++.|+|+|+|++.++++.+.
T Consensus       445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            47999999999999999999999999999998899999999999999999999999999999999999999998777777


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-------------------------------------hHH
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-------------------------------------KVH  124 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------------------------------~~~  124 (513)
                      .+.+.|+++.|+++|++.+++.+..|+|+|.|++...+..                                     ...
T Consensus       525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence            7878999999999999999999999999999996322110                                     001


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc--Cc
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NE  201 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~  201 (513)
                      ....|+++.|+++++++++.+++.|+|+|.+++.+... ...++..|++++++.++++++.+++..++++|.+++.  +.
T Consensus       605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~  684 (2102)
T PLN03200        605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE  684 (2102)
T ss_pred             hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence            12468999999999999999999999999999976655 5678889999999999999999999999999999986  44


Q ss_pred             chHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          202 DNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       202 ~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                      +++..+++.|++++|++...... ....-+..++.++       .++.+.++++.|+.+|+++++..|+.|+++|.+||.
T Consensus       685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK  764 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            45566789999999988665332 2222333333332       444567889999999999999999999999999997


Q ss_pred             CCC----cceeeecCCchHHHHhhhcCCCcchhhh--HHHHHHHhhhc
Q 010291          274 PDD----QRTIFIDGGGLELLLGLLGSTNPKQQLD--GAVALFKLANK  315 (513)
Q Consensus       274 ~~~----~~~~l~~~~~i~~L~~ll~~~~~~v~~~--a~~~L~~l~~~  315 (513)
                      ..+    ....+...|.+..|+.+|+..+.+....  +..+|..+++.
T Consensus       765 ~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~  812 (2102)
T PLN03200        765 HFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART  812 (2102)
T ss_pred             CCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence            654    2345677899999999999877776554  88888888875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.95  E-value=4.9e-28  Score=243.22  Aligned_cols=162  Identities=28%  Similarity=0.457  Sum_probs=154.5

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      +.++..+.+|||++.+++++|++||.||++.|+||++||+++++|+.+.+|.+.++++++++.+++|+|||.+.++.+++
T Consensus        28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nV  107 (571)
T KOG4441|consen   28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNV  107 (571)
T ss_pred             HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHHH
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH  496 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~  496 (513)
                      ++++.+|++||++.+.+.|.+||.++++++||..+..+|+.|++.+|.+.+..|+.+||.++.+++||.+|+.+   ++.
T Consensus       108 q~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~---~l~  184 (571)
T KOG4441|consen  108 QELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLE---ELI  184 (571)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHH---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999655   444


Q ss_pred             HHHHH
Q 010291          497 NYFAK  501 (513)
Q Consensus       497 ~~l~~  501 (513)
                      ++|.+
T Consensus       185 ~ll~~  189 (571)
T KOG4441|consen  185 GLLSS  189 (571)
T ss_pred             hhccc
Confidence            44443

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=3.1e-28  Score=242.73  Aligned_cols=148  Identities=17%  Similarity=0.193  Sum_probs=137.9

Q ss_pred             cccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          339 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       339 ~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ++-.+.++||.+.+| +.|+|||.||++.|+|||+||+++++|+.+ .|.+  .++++++++.+|+|+|||++.++.+++
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV   93 (480)
T PHA02790         16 LSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNV   93 (480)
T ss_pred             HHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccH
Confidence            455788899987554 599999999999999999999999999965 5665  389999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCc--hhhHhhh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI  488 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~  488 (513)
                      ++++.+|++||++.+++.|++||.+.++++||+.++.+|+.|++++|.+.+.+||.+||.++.++  ++|..|+
T Consensus        94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~  167 (480)
T PHA02790         94 VNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS  167 (480)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999987  8998885

>PHA03098 kelch-like protein; Provisional

Probab=99.95  E-value=4.3e-27  Score=240.32  Aligned_cols=150  Identities=23%  Similarity=0.424  Sum_probs=143.6

Q ss_pred             CCCcccEEEEe--cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHH
Q 010291          342 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL  419 (513)
Q Consensus       342 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l  419 (513)
                      ++.+||+.+.+  +|++|++||.||+++|+||++||+++++   +.+|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l   81 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI   81 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence            88899999998  9999999999999999999999999988   57899999 999999999999999999999999999


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHH
Q 010291          420 LRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI  495 (513)
Q Consensus       420 l~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l  495 (513)
                      +.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|++.+|.+.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus        82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l  157 (534)
T PHA03098         82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI  157 (534)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987655444

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.93  E-value=6e-26  Score=203.22  Aligned_cols=160  Identities=30%  Similarity=0.506  Sum_probs=152.3

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc---CH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL  413 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~  413 (513)
                      ..++.+..++||+|.+++++|++||.||++||+|||+|+.|+|.|+.+..|+|++.+.++|..+|+|||||++.+   ..
T Consensus        36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e  115 (620)
T KOG4350|consen   36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE  115 (620)
T ss_pred             HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence            345678889999999999999999999999999999999999999999999999999999999999999999975   56


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHH
Q 010291          414 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP  493 (513)
Q Consensus       414 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~  493 (513)
                      +.+.+.+.+|++|++++|.....+++.+-+..+|++.++..|..|++++|...|+-|..+|..+++.++.|..|+++.+.
T Consensus       116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~  195 (620)
T KOG4350|consen  116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK  195 (620)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHH
Q 010291          494 EIH  496 (513)
Q Consensus       494 ~l~  496 (513)
                      ++.
T Consensus       196 e~l  198 (620)
T KOG4350|consen  196 ELL  198 (620)
T ss_pred             HHH
Confidence            765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.84  E-value=1e-19  Score=183.27  Aligned_cols=308  Identities=21%  Similarity=0.220  Sum_probs=255.1

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL   96 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll   96 (513)
                      ..+...++..|.|++. ++.....+.+.|+++.|+++|..++.++...++.+|.+|+.. .+++..+.+.|+++.|.+++
T Consensus       263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl  340 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLL  340 (708)
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHh
Confidence            3455577888999998 789999999999999999999999999999999999999987 66799999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291           97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL  176 (513)
Q Consensus        97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  176 (513)
                      .+++.+++..++++|.||+ .++..+..+++.|++|.|+.++.+++  .+..+..+|.+++.+++.|..+...++++.++
T Consensus       341 ~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~  417 (708)
T PF05804_consen  341 PSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM  417 (708)
T ss_pred             cCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence            9999999999999999997 55788999999999999999998654  66779999999999999999999999999999


Q ss_pred             HHhcC-CCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh----------------hhH------------
Q 010291          177 KLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----------------ATK------------  227 (513)
Q Consensus       177 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----------------~~~------------  227 (513)
                      +++.+ +++.+...++..+.|++.++.+...+++.|+++.|++......                ...            
T Consensus       418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~  497 (708)
T PF05804_consen  418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAK  497 (708)
T ss_pred             HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            87655 4566777888999999999999999999888888765222110                000            


Q ss_pred             -----------HHHHHHHHHH--------HHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCc
Q 010291          228 -----------DCVAKTLKRL--------EEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG  286 (513)
Q Consensus       228 -----------~~~~~~~~~~--------~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~  286 (513)
                                 .-+.+++.++        ..+.+.+++|.|...|..  .++++...++..++.+|.++.+...+.+.|.
T Consensus       498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl  577 (708)
T PF05804_consen  498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL  577 (708)
T ss_pred             HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence                       0111222222        122345788888888876  3557889999999999999888889999999


Q ss_pred             hHHHHhhhcC--CCcchhhhHHHHHHHhhhccccccccCCCCCCC
Q 010291          287 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVDAAPPSP  329 (513)
Q Consensus       287 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~  329 (513)
                      ++.|+.++.+  .+.++..+.+.+++++..+..++..+......+
T Consensus       578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~  622 (708)
T PF05804_consen  578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIP  622 (708)
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchH
Confidence            9999999986  678889999999999999998888776654433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=5.9e-18  Score=170.68  Aligned_cols=310  Identities=17%  Similarity=0.198  Sum_probs=242.3

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.|+++|++++.++...++..|.+++. ..+++..+.+.|+++.|++++.+++.+++..++++|.||+.+ +..|.
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~  366 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRS  366 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHH
Confidence            4889999999999999999999999999998 688999999999999999999999999999999999999987 77899


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~  160 (513)
                      .++..|++|.|+.++.++  ..+..+..+|.+++. +++.+..+...++++.+++++-+ +++.+...++..+.|++.+.
T Consensus       367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~  443 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK  443 (708)
T ss_pred             HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence            999999999999999864  455678999999975 56778888888999999987655 56677778889999999888


Q ss_pred             ccchhhHhcCChHHHHHHh-------------------------------------cC-CCHHHHHHHHHHHHhcccCcc
Q 010291          161 HNQAGIAHNGGLVPLLKLL-------------------------------------DS-KNGSLQHNAAFALYGLADNED  202 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll-------------------------------------~~-~~~~~~~~a~~~L~~l~~~~~  202 (513)
                      .+.+.+.+.++++.|++..                                     .. ++++....++++|+||...+.
T Consensus       444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l  523 (708)
T PF05804_consen  444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL  523 (708)
T ss_pred             HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence            8887777777766554332                                     11 235566678888888876544


Q ss_pred             hHHHHH-hhcCcccccchhhhhhhhH------HHHHHHH----HHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHh
Q 010291          203 NVADFI-RVGGVQKLQDGEFIVQATK------DCVAKTL----KRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALA  269 (513)
Q Consensus       203 ~~~~~~-~~g~i~~L~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~  269 (513)
                      .-..++ +.+.++.|.+.........      ..+.+++    +....+.+.|+++.|+.+|+.  .|.+.....+.++.
T Consensus       524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~  603 (708)
T PF05804_consen  524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY  603 (708)
T ss_pred             CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            445555 4466665544222111111      1112221    222345678999999999998  56888999999999


Q ss_pred             hccCCCCcceee-ecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          270 HLCSPDDQRTIF-IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       270 ~l~~~~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      .+...++.|..+ .+.+++..|+.+++++++++|..|-.+|--++...
T Consensus       604 ~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  604 QLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            998888777655 44677889999999999999998888887777653

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.81  E-value=4.8e-19  Score=163.35  Aligned_cols=151  Identities=30%  Similarity=0.493  Sum_probs=142.5

Q ss_pred             hcccCCCcccEEEEecC-----eeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccC
Q 010291          338 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT  412 (513)
Q Consensus       338 ~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~  412 (513)
                      .++.+...+|+.|.+++     +.+++||.+|+..|+.|.+||+|++.++...+|.+||+.+.+|..+|+|+|++.+.+.
T Consensus       107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~  186 (521)
T KOG2075|consen  107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA  186 (521)
T ss_pred             hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence            46788999999999984     6899999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhh
Q 010291          413 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI  488 (513)
Q Consensus       413 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~  488 (513)
                      .+++..++.+|++|.++.|.+.|.++|.+.+...|.+..+-- |..++-++|.+.|++-|..+|.+....++|.+..
T Consensus       187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did  263 (521)
T KOG2075|consen  187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID  263 (521)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence            999999999999999999999999999999888877766666 9999999999999999999999999999999886

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.81  E-value=2.8e-19  Score=145.07  Aligned_cols=150  Identities=25%  Similarity=0.473  Sum_probs=131.1

Q ss_pred             hhcccCCCcccEEEEecC---eeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc--
Q 010291          337 DQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV--  411 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~--  411 (513)
                      ..+.....++|+.|.++|   +.+++||.||++||++++  |..+-.| ......++|.++++|..+++||||+.+++  
T Consensus        58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk~  134 (280)
T KOG4591|consen   58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFKE  134 (280)
T ss_pred             HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeecccccccc
Confidence            456788899999999984   789999999999999987  3322122 23467889999999999999999999875  


Q ss_pred             CHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhh
Q 010291          412 TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR  490 (513)
Q Consensus       412 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~  490 (513)
                      .++.+.++.+.|..|+++.|++.|++-+...++++||..+|.+|+..+...|...|.+.|.-+|+++- .++|.+.+..
T Consensus       135 dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~a  212 (280)
T KOG4591|consen  135 DDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSAA  212 (280)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999974 4788888543

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.79  E-value=6.5e-19  Score=158.42  Aligned_cols=155  Identities=20%  Similarity=0.358  Sum_probs=143.9

Q ss_pred             chhhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceec----CCCCHHHHHHHHHHHhcCccc
Q 010291          335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSVD  410 (513)
Q Consensus       335 l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y~~~~~  410 (513)
                      +.+.++.++..+||++.+-|..++.||.-|. .|+||++||+|.|+|++...|.+    |.|+..+|..++.-+|.++++
T Consensus        59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve  137 (488)
T KOG4682|consen   59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE  137 (488)
T ss_pred             HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence            3456778999999999999999999999998 89999999999999999987766    469999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhh
Q 010291          411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR  490 (513)
Q Consensus       411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~  490 (513)
                      |..+.+..++++|.+++++++.+.|.+.+++.+++.|++.+|..+..|+.+.+++.|.+|+..|+-.+....-|.+++.+
T Consensus       138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~  217 (488)
T KOG4682|consen  138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISIN  217 (488)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877766666544

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.79  E-value=2.3e-19  Score=142.82  Aligned_cols=105  Identities=32%  Similarity=0.661  Sum_probs=95.2

Q ss_pred             hcccCCCcccEEEEec-CeeehhhHHHHhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccccC-HH
Q 010291          338 QFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-LD  414 (513)
Q Consensus       338 ~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~~  414 (513)
                      +++.++.++|+++.++ +..|++||.+|+++|+||+.||.+. +++.+..+|.++++++++|..+++|+|+|...++ .+
T Consensus         3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~   82 (111)
T PF00651_consen    3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDE   82 (111)
T ss_dssp             HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TT
T ss_pred             HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHH
Confidence            4677889999999999 7999999999999999999999988 5676667899999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~  442 (513)
                      ++.+++.+|++|+++.|++.|+++|.++
T Consensus        83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   83 NVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            9999999999999999999999999874

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.75  E-value=3.4e-17  Score=167.95  Aligned_cols=315  Identities=21%  Similarity=0.240  Sum_probs=243.3

Q ss_pred             CCChhHHHHhhccC---CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh----------hcC--------CCHH
Q 010291            2 EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM----------LRS--------EDSA   60 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l----------L~~--------~~~~   60 (513)
                      .|+++.|+++|..+   +.+.+..|-.+|.|+...+++.+..-.+..++..|-++          +..        ++..
T Consensus       234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H  313 (2195)
T KOG2122|consen  234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH  313 (2195)
T ss_pred             ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence            58999999999754   46789999999999998777766555544444333321          111        1122


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC------------CChHHHHHHHHHHHHhhcCCchhhHHHH-h
Q 010291           61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------------CCSESQREAALLLGQFAATDSDCKVHIV-Q  127 (513)
Q Consensus        61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~  127 (513)
                      -...|+.+|.+++.+ ++.|..+.+.|++..+-+++.-            ..-.+++++..+|.||+.++..++..+. .
T Consensus       314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            233788899999877 8889999999999999998741            1247899999999999999888777654 6


Q ss_pred             cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--ccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccc-Ccch
Q 010291          128 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDN  203 (513)
Q Consensus       128 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~  203 (513)
                      .|+|..++..|.+...++....+.+|+||+-..  ..++.+.+.|-+..|.... ...........+.+||||+. ..+|
T Consensus       393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            899999999999998899999999999999443  3366677788888877664 45556778889999999987 6678


Q ss_pred             HHHHHhh-cCcccccchhh------------hhh----hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHH
Q 010291          204 VADFIRV-GGVQKLQDGEF------------IVQ----ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL  266 (513)
Q Consensus       204 ~~~~~~~-g~i~~L~~~~~------------~~~----~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~  266 (513)
                      +..|+.. |.+.-|+....            +..    .....++.+..-.+.+...+.+..|++.|++.+-.+..++|+
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCG  552 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACG  552 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchh
Confidence            8888864 55555543111            111    112222333344456678889999999999999999999999


Q ss_pred             HHhhcc-CCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          267 ALAHLC-SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       267 aL~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      +|+||+ ++++.++.+++.|+++.|.+++.+++..+..-++.+|.|+..+.+
T Consensus       553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            999995 677788999999999999999999999999999999999987763

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.1e-15  Score=135.20  Aligned_cols=310  Identities=18%  Similarity=0.233  Sum_probs=247.2

Q ss_pred             CChhHHHHhh---ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCh
Q 010291            3 GGIPPLVELL---EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         3 g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      |+.+.++.++   .+++..+...++.+|..+..+.|+    +.+..+...++.+|.  .++.++-...+..+..-|..++
T Consensus       104 ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE  179 (461)
T KOG4199|consen  104 GAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE  179 (461)
T ss_pred             CCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence            5555555554   457788899999999999876555    566778899999987  4578888889999999999889


Q ss_pred             hHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCc---------hhhHHHHhcCChHHHHHHhCCC-CHHHH
Q 010291           78 NIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS---------DCKVHIVQRGAVRPLIEMLQSP-DVQLR  146 (513)
Q Consensus        78 ~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~  146 (513)
                      -+|+.+++.++.+.+.+.+... ..++.+.+.|+++-|...++         +....+...|++..|+..++.. +|.+.
T Consensus       180 ~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L  259 (461)
T KOG4199|consen  180 VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSL  259 (461)
T ss_pred             HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHH
Confidence            9999999999999999877654 45689999999999985543         3345567788899999999875 78899


Q ss_pred             HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCH-H---HHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291          147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG-S---LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI  222 (513)
Q Consensus       147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~---~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~  222 (513)
                      ...+.+|..|+..++..+.+.+.|+++.|+.++.+.+. .   ....++..|..|+.++.++..+++.|+.+.++.+...
T Consensus       260 ~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~  339 (461)
T KOG4199|consen  260 VSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR  339 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH
Confidence            99999999999999999999999999999999988542 2   4467888999999999999999999999998876666


Q ss_pred             hhhhHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCC-CCcceeeecCCchH
Q 010291          223 VQATKDCVAKTLK-----------RLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLE  288 (513)
Q Consensus       223 ~~~~~~~~~~~~~-----------~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~  288 (513)
                      .......+.....           .-...++.|.-...++.|+.  ....+|.+||+.+.|++.. .+++..+ -..|++
T Consensus       340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~-l~~GiE  418 (461)
T KOG4199|consen  340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL-LANGIE  418 (461)
T ss_pred             cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH-HhccHH
Confidence            5555444433322           22344677777888888887  4567899999999999765 4455544 457799


Q ss_pred             HHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          289 LLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       289 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .|++.....++.....+-.+|..|..+.+
T Consensus       419 ~Li~~A~~~h~tce~~akaALRDLGc~v~  447 (461)
T KOG4199|consen  419 KLIRTAKANHETCEAAAKAALRDLGCDVY  447 (461)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence            99999999999998888889988876543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=4.9e-17  Score=160.15  Aligned_cols=309  Identities=19%  Similarity=0.245  Sum_probs=231.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~   82 (513)
                      +|..+.+|.+.++.+|.+|+..+..++.++...+..+.+.|+|+.|+.+|.+.+.+|+..|+++|.||..++..  ++-.
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999987766  8888


Q ss_pred             HHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--------C------CHHHHH
Q 010291           83 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------P------DVQLRE  147 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~------~~~~~~  147 (513)
                      +.+.++++.++++++. .|.++++....+|+||++. +..+..++. ..+..|...+-.        +      +..+..
T Consensus       315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeee
Confidence            9999999999999986 7899999999999999866 344444443 344444433321        1      256779


Q ss_pred             HHHHHHHHHhh-ccccchhhHh-cCChHHHHHHhc------CCCHHHHHHHHHHHHhcccCcc-----hHHHHH-hhcCc
Q 010291          148 MSAFALGRLAQ-DMHNQAGIAH-NGGLVPLLKLLD------SKNGSLQHNAAFALYGLADNED-----NVADFI-RVGGV  213 (513)
Q Consensus       148 ~a~~~L~~l~~-~~~~~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~-~~g~i  213 (513)
                      ++..+|+|++. +.+.|+.+.+ .|.|+.|+..++      ..+.+..++++..+.||+..-+     ...+.. ..+..
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            99999999996 5566788877 678898988876      3467788999999999986221     111111 11111


Q ss_pred             ccccchhhhhhhhHHHHHHHHH-------------------HHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccC
Q 010291          214 QKLQDGEFIVQATKDCVAKTLK-------------------RLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCS  273 (513)
Q Consensus       214 ~~L~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~  273 (513)
                      ...- .   ......|+....+                   ..+.++...++..-+.+|.. .+....++++++|.|++.
T Consensus       473 ~~~~-~---~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  473 PGVG-P---PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccCC-C---cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence            0000 0   0011122211111                   12223555677765566654 678889999999999976


Q ss_pred             CCC------cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291          274 PDD------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL  319 (513)
Q Consensus       274 ~~~------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  319 (513)
                      +..      .+..+.+..+.+.|+.++..+++.+.+.++.+|.||+.+....
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk  600 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK  600 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence            422      3345588899999999999999999999999999999875543

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.70  E-value=6.9e-17  Score=123.24  Aligned_cols=90  Identities=37%  Similarity=0.692  Sum_probs=85.8

Q ss_pred             cEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHh
Q 010291          347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY  426 (513)
Q Consensus       347 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~  426 (513)
                      |+++.++|+.|++||.+|+++|+||++||.+++.++....+.+++.++++|+.+++|+|+|.+.++.+++.+++.+|++|
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~   80 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL   80 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999998888778899999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHH
Q 010291          427 LLEGLKRLCE  436 (513)
Q Consensus       427 ~~~~l~~~c~  436 (513)
                      +++++...|+
T Consensus        81 ~~~~l~~~c~   90 (90)
T smart00225       81 QIPGLVELCE   90 (90)
T ss_pred             CcHHHHhhhC
Confidence            9999999884

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.69  E-value=6.9e-17  Score=157.59  Aligned_cols=162  Identities=21%  Similarity=0.396  Sum_probs=142.0

Q ss_pred             CCcccEEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc-Cccc-----cCHHH
Q 010291          343 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDI  415 (513)
Q Consensus       343 ~~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~-----~~~~~  415 (513)
                      ...-|+.+.. +|+.++|||++|++|++||..||..-|.|++.-.+.+..++.+.+..+|+|+|+ +...     -..+.
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF  787 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF  787 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence            4455666666 567799999999999999999999999999887777777889999999999994 4443     24577


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHH
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI  495 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l  495 (513)
                      +.+++..||.|.+.+|++.|+..|.+.++..||..++++|..|++..|+..|++||..|+..++.-....+++...+..+
T Consensus       788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l  867 (1267)
T KOG0783|consen  788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL  867 (1267)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999988777777777788888


Q ss_pred             HHHHHHHhC
Q 010291          496 HNYFAKALT  504 (513)
Q Consensus       496 ~~~l~~~~~  504 (513)
                      .+++++.+.
T Consensus       868 ~~~yrkm~~  876 (1267)
T KOG0783|consen  868 AQRYRKMLS  876 (1267)
T ss_pred             HHHHHHHhh
Confidence            888887775

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.69  E-value=7.3e-16  Score=151.96  Aligned_cols=283  Identities=25%  Similarity=0.297  Sum_probs=211.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      |+|+.|+.+|.+++.+++.+|+++|.|+..++..  ++..+.+.++|+.++++|+ ..|.++++....+||||+.. +..
T Consensus       275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~l  353 (717)
T KOG1048|consen  275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DAL  353 (717)
T ss_pred             ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHH
Confidence            8999999999999999999999999999988665  9999999999999999999 58999999999999999976 555


Q ss_pred             HHHHHhCCChHHHHHhhcC--------------CChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhC-----
Q 010291           80 KKEVLAAGALQPVIGLLSS--------------CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ-----  139 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~-----  139 (513)
                      +..++. .++..|..-+-.              .+.++..++..+|+|+++...+.++.+.+ .|.|..|+..++     
T Consensus       354 K~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~  432 (717)
T KOG1048|consen  354 KMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK  432 (717)
T ss_pred             HHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence            555544 344444443211              13567799999999999888888988876 889999998886     


Q ss_pred             -CCCHHHHHHHHHHHHHHhhcccc--------------------------------chh---------------------
Q 010291          140 -SPDVQLREMSAFALGRLAQDMHN--------------------------------QAG---------------------  165 (513)
Q Consensus       140 -~~~~~~~~~a~~~L~~l~~~~~~--------------------------------~~~---------------------  165 (513)
                       ..|.+.+++|+.+|+||+..-+.                                +++                     
T Consensus       433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e  512 (717)
T KOG1048|consen  433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE  512 (717)
T ss_pred             ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence             24778999999999999843220                                000                     


Q ss_pred             -hHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291          166 -IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       166 -~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (513)
                       +....++..-+.++ .+.++.+.++++++|-|++...-.-...+...                           .+...
T Consensus       513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~---------------------------v~~ke  565 (717)
T KOG1048|consen  513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA---------------------------VFRKE  565 (717)
T ss_pred             eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh---------------------------hhhhc
Confidence             00000122212222 23456777888888888875332211111111                           11355


Q ss_pred             hhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCC------cchhhhHHHHHHHhhhc
Q 010291          244 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN------PKQQLDGAVALFKLANK  315 (513)
Q Consensus       244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~  315 (513)
                      ..++.|+.+|+..++.|...++.+|.||+.+..++..+- .++++.|++.+....      .+....++.+|.++...
T Consensus       566 kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~  642 (717)
T KOG1048|consen  566 KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK  642 (717)
T ss_pred             cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence            679999999999999999999999999999999987765 789999999997633      35556677777777754

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.65  E-value=2e-14  Score=131.32  Aligned_cols=278  Identities=18%  Similarity=0.184  Sum_probs=211.6

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC---C----CHHHHHHHHHHHHHhhc
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---E----DSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~----~~~v~~~a~~~L~~l~~   74 (513)
                      +|+++.|.+..+|++.++-.+.+++|+|+|..+.++|..+.+.||-+.+++.|+.   .    +.+....+.+.|.|...
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            4677888888899999999999999999999999999999999998888888872   1    34677788899999999


Q ss_pred             CChhHHHHHHhCCChHHHHHhhcC--CCh--------------------------------------------HHHHHHH
Q 010291           75 SSPNIKKEVLAAGALQPVIGLLSS--CCS--------------------------------------------ESQREAA  108 (513)
Q Consensus        75 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~--------------------------------------------~~~~~a~  108 (513)
                      ++.+.+..+.+.|+++.|...+.-  .+.                                            ++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999988776531  111                                            1222222


Q ss_pred             HHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-C-------CHHHHHHHHHHHHHHhhccccchhhHhcC-ChHHHHHHh
Q 010291          109 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-------DVQLREMSAFALGRLAQDMHNQAGIAHNG-GLVPLLKLL  179 (513)
Q Consensus       109 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~ll  179 (513)
                      ..|...+ .+...+..+.+.|.+..++.+++. +       .......++....-+..+++.-.++...+ .++.+..++
T Consensus       246 eila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence            2333332 222333446677777777777764 1       12233455555555556666655555544 677899999


Q ss_pred             cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----
Q 010291          180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----  255 (513)
Q Consensus       180 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----  255 (513)
                      .+.|...+..+..+++|+++.++++.++++.                                 +++..|+.+|..    
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~---------------------------------~~~nkL~~~l~~~~~v  371 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDICIQLVQK---------------------------------DFLNKLISCLMQEKDV  371 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHHHHHHHH---------------------------------HHHHHHHHHHHHhcCC
Confidence            9999999999999999999999888888654                                 467777787766    


Q ss_pred             -hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          256 -AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       256 -~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                       ++.++|.+++.+|.|+..+..++..+..+|..+.++..++...|.++.+-...+..+.
T Consensus       372 dgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~  430 (604)
T KOG4500|consen  372 DGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR  430 (604)
T ss_pred             CccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence             5677899999999999999999999999999999999999988888877666655443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.63  E-value=3.2e-14  Score=142.47  Aligned_cols=278  Identities=17%  Similarity=0.204  Sum_probs=224.7

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ..+.|.+.|.++++.+|..+++.|++++.++......+.+.++++.++.+|.+++..+...|+.+|.+++...+. .+.+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l  156 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQL  156 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHH
Confidence            456778888999999999999999999987777777888899999999999999999999999999999987544 4667


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      +..+.++.|..++..++..+|..+..++.+++..+++....+.+.|+++.++..++++|.-++.+++.+|..|+..+.+.
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~  236 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL  236 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence            78888999999998888889999999999999999999999999999999999999999999999999999999988889


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHH------HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSL------QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL  237 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~------~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~  237 (513)
                      ..+.+.|.++.|..++.+.+.+-      .-..+...++++.....  .+..                            
T Consensus       237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~----------------------------  286 (503)
T PF10508_consen  237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLE----------------------------  286 (503)
T ss_pred             HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHH----------------------------
Confidence            99999999999999997653221      12222445555542111  0000                            


Q ss_pred             HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceee-ecC-CchHH----HHhhhcCCCcchhhhHHHHHHH
Q 010291          238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF-IDG-GGLEL----LLGLLGSTNPKQQLDGAVALFK  311 (513)
Q Consensus       238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l-~~~-~~i~~----L~~ll~~~~~~v~~~a~~~L~~  311 (513)
                         .-..++..+..++.+.|+..+..|..+++.++...+++..+ .+. +.++.    +.....+...++|..+..++.+
T Consensus       287 ---~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~  363 (503)
T PF10508_consen  287 ---LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALAS  363 (503)
T ss_pred             ---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence               11345667778888899999999999999999988887766 333 33344    3444455777899999999999


Q ss_pred             hhhc
Q 010291          312 LANK  315 (513)
Q Consensus       312 l~~~  315 (513)
                      +...
T Consensus       364 il~~  367 (503)
T PF10508_consen  364 ILTS  367 (503)
T ss_pred             HHhc
Confidence            9754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=1.8e-13  Score=122.65  Aligned_cols=191  Identities=18%  Similarity=0.152  Sum_probs=160.6

Q ss_pred             CChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            3 GGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         3 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      +-++.|+.+|+. .+|.++..|+.++++.+. .+.++..+.+.|+++.+..+|.++++.++..|+++|.|++.+. +++.
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~   89 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQE   89 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHH
Confidence            446889999985 689999999999999886 7899999999999999999999999999999999999999774 4444


Q ss_pred             HHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      .+-.  .++.+++.+.+  .+.+++..+..+|.||+..+.. ...+.  +.++.++.++.+++..++..++++|.||+.+
T Consensus        90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            4432  46666664443  3678999999999999855433 34343  4799999999999999999999999999999


Q ss_pred             cccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccC
Q 010291          160 MHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN  200 (513)
Q Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~  200 (513)
                      +...+.++..+++..++.++..+ +.++...++..+.|+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99988899999999999999876 577788899999999763

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.58  E-value=6e-14  Score=128.27  Aligned_cols=306  Identities=16%  Similarity=0.111  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhc----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHH
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV   92 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   92 (513)
                      ..++..+..++...+. ++-.|..+.+.    +.+..|.+...+++.++..+..++|+|+|.++.+.|..+.+.||-..+
T Consensus        56 ~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv  134 (604)
T KOG4500|consen   56 DTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV  134 (604)
T ss_pred             chhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence            3466677788888886 66666666655    445555556667789999999999999999999999999999998888


Q ss_pred             HHhhcC----C---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcc-cc
Q 010291           93 IGLLSS----C---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM-HN  162 (513)
Q Consensus        93 ~~ll~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~-~~  162 (513)
                      +.+|+.    .   +.+...-+...|.|..-++.+.+.++.+.|+++.|...+.-+  +....+.......||..-. ++
T Consensus       135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~  214 (604)
T KOG4500|consen  135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM  214 (604)
T ss_pred             HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence            888764    1   236677788899999989999999999999999998887643  5555555555555554211 11


Q ss_pred             -chhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh-----hhhhHHHHHHHH-
Q 010291          163 -QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-----VQATKDCVAKTL-  234 (513)
Q Consensus       163 -~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~-----~~~~~~~~~~~~-  234 (513)
                       .....+......+++++.+. ++++.+.....+...+.++..+-.+.+.|.+..+++....     ............ 
T Consensus       215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~  294 (604)
T KOG4500|consen  215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIA  294 (604)
T ss_pred             hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhh
Confidence             22233344455577777543 4667777888999999998888888888876665543332     111111111111 


Q ss_pred             ----------HHHHHHhhhh-hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-----CC
Q 010291          235 ----------KRLEEKIHGR-VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-----TN  298 (513)
Q Consensus       235 ----------~~~~~~~~~~-~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-----~~  298 (513)
                                +..+.++..+ ++..++.++++.+.+.+..+..+|+|+++.++.+..+++.+.+..|+.++..     ++
T Consensus       295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn  374 (604)
T KOG4500|consen  295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN  374 (604)
T ss_pred             hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                      2334455555 9999999999999999999999999999999999999999999999999853     55


Q ss_pred             cchhhhHHHHHHHhhhccccccccC
Q 010291          299 PKQQLDGAVALFKLANKATTLSSVD  323 (513)
Q Consensus       299 ~~v~~~a~~~L~~l~~~~~~~~~i~  323 (513)
                      -++|.+++.+|.|+.-...+...+.
T Consensus       375 V~~qhA~lsALRnl~IPv~nka~~~  399 (604)
T KOG4500|consen  375 VERQHACLSALRNLMIPVSNKAHFA  399 (604)
T ss_pred             chhHHHHHHHHHhccccCCchhhcc
Confidence            6778899999999986555444443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=1.5e-13  Score=123.16  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=159.1

Q ss_pred             HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291           42 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD  120 (513)
Q Consensus        42 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  120 (513)
                      .+.+-++.|+.+|+ +.++.+++.++.++++.+.. +..++.+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence            45667899999999 57899999999999999865 78899999999999999999999999999999999999755 44


Q ss_pred             hhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291          121 CKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  198 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  198 (513)
                      ++..+-  ..++.+++.+.+.  +..++..+.++|.||+..++.+..+.  +.++.++.++.+++..++..++.+|.||+
T Consensus        87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            444432  2577777655443  78999999999999998777766654  47888999999999999999999999999


Q ss_pred             cCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hcchhhhHHHHHhhccC
Q 010291          199 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCS  273 (513)
Q Consensus       199 ~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~-~~~v~~~a~~aL~~l~~  273 (513)
                      .++...+.++..+                                 ++..++.++.+. +.++...++..+.|+..
T Consensus       163 ~np~~~~~Ll~~q---------------------------------~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  163 ENPDMTRELLSAQ---------------------------------VLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             cCHHHHHHHHhcc---------------------------------chhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9998877776654                                 456677777774 56777888888888854

>PRK09687 putative lyase; Provisional

Probab=99.52  E-value=8.3e-13  Score=121.38  Aligned_cols=252  Identities=17%  Similarity=0.113  Sum_probs=169.1

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .++.|.++|.+++..+|..|++.|..+..           ..+++.+..++.++++.+|..|+++|+.+......     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            35788999999999999999999998764           24577888899999999999999999999643111     


Q ss_pred             HhCCChHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           84 LAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        84 ~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                       ....++.|..+ ++++++.|+..|+.+|++++......     ....++.+...+.++++.++..++++|+.+.     
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----  156 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----  156 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence             11246777766 67788999999999999996433211     1124556778888889999999999997653     


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                           ...+++.|+.++.++++.++..|+.+|+.+..... ....+..     .|      .+........++..+....
T Consensus       157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~-----~L------~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA-----ML------QDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH-----Hh------cCCChHHHHHHHHHHHccC
Confidence                 22468889999999999999999999999843222 1111110     00      0111122222333333344


Q ss_pred             hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc-CCCcchhhhHHHHHH
Q 010291          242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALF  310 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~  310 (513)
                      +..+++.|+..|++++  ++..++.+|+++-.          ..++|.|.+++. ++++.++..+.+++.
T Consensus       221 ~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        221 DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            5556666666665543  45566666665532          235666666665 456666666665553

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=5.8e-13  Score=107.51  Aligned_cols=118  Identities=28%  Similarity=0.412  Sum_probs=111.2

Q ss_pred             HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc
Q 010291           40 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  119 (513)
Q Consensus        40 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  119 (513)
                      .+.+.|+++.++++|.++++.++..++++|++++.+++..+..+.+.|+++.++.++.+++++++..++++|++++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            46688999999999999999999999999999999988889999999999999999999999999999999999998877


Q ss_pred             hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291          120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus       120 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      .....+.+.|+++.+++++.+++..+++.++++|.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            77888889999999999999999999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.48  E-value=1.4e-12  Score=119.98  Aligned_cols=223  Identities=17%  Similarity=0.157  Sum_probs=164.5

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++.+.++++++++.+|..|+++|+.+.... ..     ....++.|..+ ++++++.||..|+.+|++++......   
T Consensus        55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---  125 (280)
T PRK09687         55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---  125 (280)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence            4577888889999999999999999987521 11     12356777776 56889999999999999996432211   


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                        ...++..+...+.++++.++..++++|+++.  ++         ..++.|+.+++++++.++..|+.+|+.+..+   
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---  189 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYD---  189 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---
Confidence              1124556777788889999999999998773  12         2688999999999999999999999998321   


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                           ....++.|+.++.+.+..++..|+++|+.+-. +.....+.+         ......    ....++.-+..+.+
T Consensus       190 -----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~---------~L~~~~----~~~~a~~ALg~ig~  250 (280)
T PRK09687        190 -----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIK---------ELKKGT----VGDLIIEAAGELGD  250 (280)
T ss_pred             -----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHH---------HHcCCc----hHHHHHHHHHhcCC
Confidence                 11456679999999999999999999998653 333333322         111100    11234555666677


Q ss_pred             hhhHHHHHHHHH-HhhcchhhhHHHHHhh
Q 010291          243 GRVLNHLLYLMR-VAEKGVQRRVALALAH  270 (513)
Q Consensus       243 ~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~  270 (513)
                      ...+|.|..++. ++|..++..|.++|..
T Consensus       251 ~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        251 KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            889999999997 6899999999988753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.2e-12  Score=105.66  Aligned_cols=114  Identities=37%  Similarity=0.518  Sum_probs=108.6

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.++++|+++++.++..++.+|.+++.++++....+.+.|+++.++++|.++++.++..++++|++++.+.+..+.
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            58999999999999999999999999999998799999999999999999999999999999999999999998878888


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  115 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  115 (513)
                      .+.+.|+++.+++++.+.+.+++..++++|.+++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=4.6e-11  Score=106.33  Aligned_cols=273  Identities=14%  Similarity=0.164  Sum_probs=210.2

Q ss_pred             ChhHHHHhhc--cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh---
Q 010291            4 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP---   77 (513)
Q Consensus         4 ~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~---   77 (513)
                      ++..++.+|.  .++.++-...+.++..-+.+++-+++.+.+.++.+.+.+.|. .+..++.+...++++-+..+.+   
T Consensus       146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV  225 (461)
T KOG4199|consen  146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRV  225 (461)
T ss_pred             cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceee
Confidence            5667778774  456788888999999999999999999999999999997777 3444688888999999986643   


Q ss_pred             ------hHHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CH---HHH
Q 010291           78 ------NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DV---QLR  146 (513)
Q Consensus        78 ------~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~---~~~  146 (513)
                            +..+.+.+.|++..|++.+.. -++++...++.+|..++.. .+....+.+.|++..|+.++.+. +.   .+.
T Consensus       226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~  304 (461)
T KOG4199|consen  226 VFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLA  304 (461)
T ss_pred             ecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence                  234567778899999999986 3689999999999999855 55567789999999999999874 33   355


Q ss_pred             HHHHHHHHHHhhccccchhhHhcCChHHHHHHhc--CCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhh
Q 010291          147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIV  223 (513)
Q Consensus       147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~  223 (513)
                      +.++..|+.|+.++.++..+++.|+.+.++.++.  +.++.+...++.++..||- .+++...+++.|+-..-++.....
T Consensus       305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah  384 (461)
T KOG4199|consen  305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH  384 (461)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence            7889999999999999999999999999888764  4578899999999999985 888888899988766655544433


Q ss_pred             hhhH---HHHHHHHHHHHHH-------hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc
Q 010291          224 QATK---DCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ  277 (513)
Q Consensus       224 ~~~~---~~~~~~~~~~~~~-------~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~  277 (513)
                      +...   ......+.++...       +-...++.|+..-+..++.....|-.+|..|-.+...
T Consensus       385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l  448 (461)
T KOG4199|consen  385 PVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL  448 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence            3222   2222233333221       2234678888888888888888888899888554443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.46  E-value=1.4e-11  Score=123.64  Aligned_cols=293  Identities=20%  Similarity=0.211  Sum_probs=222.7

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .+.++.++.++.+++..+...|+.+|.+++. ++.....+.+.+.+..|.+++..++..+|..+..++.+++..+++...
T Consensus       118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~  196 (503)
T PF10508_consen  118 NELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE  196 (503)
T ss_pred             ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3677889999999999999999999999998 566666788888899999999988899999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CH---H-HHHHHHHHHHH
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DV---Q-LREMSAFALGR  155 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~---~-~~~~a~~~L~~  155 (513)
                      .+.+.|.++.++..++++|.=++..++.+|..++. .+.....+.+.|+++.|.+++...  ||   . ..-..+...++
T Consensus       197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~  275 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN  275 (503)
T ss_pred             HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence            99999999999999999888899999999999997 677788899999999999999764  33   1 12333466677


Q ss_pred             HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH-HhhcCcccccchhhhhhhhHHHHHHHH
Q 010291          156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQKLQDGEFIVQATKDCVAKTL  234 (513)
Q Consensus       156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~i~~L~~~~~~~~~~~~~~~~~~  234 (513)
                      ++...+..-.-.-...+..+..++.+.|...+..|+.+++.++...+.+..+ ...|.                      
T Consensus       276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~----------------------  333 (503)
T PF10508_consen  276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP----------------------  333 (503)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch----------------------
Confidence            7764332221112334455778888899999999999999999877766555 22110                      


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc---------c-e--eeecCCchH-HHHhhhcCCCcch
Q 010291          235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ---------R-T--IFIDGGGLE-LLLGLLGSTNPKQ  301 (513)
Q Consensus       235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~---------~-~--~l~~~~~i~-~L~~ll~~~~~~v  301 (513)
                            .-..++........++..++|..++.+++++...+..         . .  .....+... .+..+++.+-|++
T Consensus       334 ------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~el  407 (503)
T PF10508_consen  334 ------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPEL  407 (503)
T ss_pred             ------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHH
Confidence                  0112344444555556778899999999998432111         0 1  112223344 6778888888999


Q ss_pred             hhhHHHHHHHhhhccccccccCC
Q 010291          302 QLDGAVALFKLANKATTLSSVDA  324 (513)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~i~~  324 (513)
                      |..+...+..++.+.+....+..
T Consensus       408 r~a~~~~l~~l~~~~Wg~~~i~~  430 (503)
T PF10508_consen  408 RCAAYRLLQALAAQPWGQREICS  430 (503)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHh
Confidence            99999999999999887665544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.37  E-value=1.3e-10  Score=125.10  Aligned_cols=255  Identities=19%  Similarity=0.133  Sum_probs=142.7

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.++.|++.|+++++.+|..|+..|+.+..           .+.++.|+..|+++++.+|..|+.+|..+....+     
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence            456889999999999999999999998753           3468889999999999999999999988853211     


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--  160 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--  160 (513)
                           ..+.+...|.++++.++..++.+|..+...+            ...++..|.++++.++..|+.+|..+....  
T Consensus       685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l  747 (897)
T PRK13800        685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDDVESV  747 (897)
T ss_pred             -----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH
Confidence                 1235556666666777777766666653111            123444555555555555555554431000  


Q ss_pred             ---------ccchhh----H-----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291          161 ---------HNQAGI----A-----HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI  222 (513)
Q Consensus       161 ---------~~~~~~----~-----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~  222 (513)
                               ..|...    .     ....++.|..++.++++.++..|+.+|+.+...+.....+..     .|.     
T Consensus       748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~-----aL~-----  817 (897)
T PRK13800        748 AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATA-----ALR-----  817 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHH-----Hhc-----
Confidence                     000000    0     011244566666666666666666666665432211111100     000     


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchh
Q 010291          223 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                       +.....-..+...+..+.....++.|+.+|+++++.||..|+++|+.+..         .....+.|...+++.++.||
T Consensus       818 -d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr  887 (897)
T PRK13800        818 -ASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDADVR  887 (897)
T ss_pred             -CCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHHHH
Confidence             00111222233334444445556666666666666666666666665410         11235556666666666666


Q ss_pred             hhHHHHHH
Q 010291          303 LDGAVALF  310 (513)
Q Consensus       303 ~~a~~~L~  310 (513)
                      ..|..+|.
T Consensus       888 ~~A~~aL~  895 (897)
T PRK13800        888 AYARRALA  895 (897)
T ss_pred             HHHHHHHh
Confidence            66666554

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.36  E-value=1.2e-10  Score=111.47  Aligned_cols=310  Identities=14%  Similarity=0.157  Sum_probs=224.4

Q ss_pred             hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 010291            5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVEC-----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      +..++.+|+. .++++....+..+..+...++.....+.+.     ....+++++|..++.-+...|+.+|..+......
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~  134 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA  134 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence            4566777754 567888888888999988766666666653     5678888999988999999999999999764332


Q ss_pred             HHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHH
Q 010291           79 IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGR  155 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~  155 (513)
                      ........-..+.+...+.+. +.+.+..++.+|..+... ++.|..+.+.++++.|+++++..  +..+++.++.+++-
T Consensus       135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl  213 (429)
T cd00256         135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL  213 (429)
T ss_pred             ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            211111111233445555543 467788888999999855 66688888888999999999863  56899999999999


Q ss_pred             HhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCc-------chHHHHHhhcCcccccchh---hh--
Q 010291          156 LAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNE-------DNVADFIRVGGVQKLQDGE---FI--  222 (513)
Q Consensus       156 l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~~~---~~--  222 (513)
                      |+.+++....+...+.++.++++++.. ..++.+-++.++.|+...+       .....++..|.++.+..+.   ++  
T Consensus       214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De  293 (429)
T cd00256         214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE  293 (429)
T ss_pred             HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence            998877666666778899999999765 4789999999999998732       2334556666655432111   10  


Q ss_pred             -----hhh----------------------------------hHHHHHHHHHHHHHHhhhhhHHHHHHHHH-Hhhcchhh
Q 010291          223 -----VQA----------------------------------TKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQR  262 (513)
Q Consensus       223 -----~~~----------------------------------~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~  262 (513)
                           ...                                  ....|..+..++.. .+..++..|+.+|. +.|+.+..
T Consensus       294 dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~-~~~~llk~L~~iL~~s~d~~~la  372 (429)
T cd00256         294 DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNE-KNYELLKILIHLLETSVDPIILA  372 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHh-cchHHHHHHHHHHhcCCCcceee
Confidence                 000                                  11223333333321 23457899999996 46788888


Q ss_pred             hHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          263 RVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       263 ~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      -||.=++.+++. |.+|..+-+.|+=..+++++.+++++++.+|..++..+..+.
T Consensus       373 VAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~  427 (429)
T cd00256         373 VACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN  427 (429)
T ss_pred             hhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            899999999975 568888888899999999999999999999999998886553

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=2.7e-11  Score=112.67  Aligned_cols=312  Identities=15%  Similarity=0.110  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL   96 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll   96 (513)
                      .+....|+..|.|++. +-..-..++...++..|+..|..++.++.......|-.++-. .+++..+.+.|++..|+.++
T Consensus       277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klf  354 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLF  354 (791)
T ss_pred             HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhc
Confidence            3455667888999997 567777888889999999999988899999999999999866 56678889999999999999


Q ss_pred             cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291           97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL  176 (513)
Q Consensus        97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  176 (513)
                      ...+++++......|.|++ .+...+..++..|.+|.+..++.++.  -...|...+..++.++..+..+.....++.+.
T Consensus       355 p~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lm  431 (791)
T KOG1222|consen  355 PIQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLM  431 (791)
T ss_pred             CCCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999997 55777899999999999999998764  23447888899998888888888888888888


Q ss_pred             HHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh---------------hhhh-hH------------
Q 010291          177 KLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF---------------IVQA-TK------------  227 (513)
Q Consensus       177 ~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~---------------~~~~-~~------------  227 (513)
                      +.+-++ +.++-...+..-.|+|-+..+...+++..++..|.+..+               .+.. ..            
T Consensus       432 k~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~  511 (791)
T KOG1222|consen  432 KDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG  511 (791)
T ss_pred             HHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            766544 344444444444678877766666666555554432111               0000 00            


Q ss_pred             -----------HHHHHHHHHH--------HHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCc
Q 010291          228 -----------DCVAKTLKRL--------EEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG  286 (513)
Q Consensus       228 -----------~~~~~~~~~~--------~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~  286 (513)
                                 .-+.+++.++        ..+.+...+|.+-..|+.  ...+++....-+++.++....+...+..+|.
T Consensus       512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~  591 (791)
T KOG1222|consen  512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL  591 (791)
T ss_pred             HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence                       0111222222        112344556666666655  3456778888899999998888889999999


Q ss_pred             hHHHHhhhcC--CCcchhhhHHHHHHHhhhccccccccCCCCCCCCCcc
Q 010291          287 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQV  333 (513)
Q Consensus       287 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~~~~~  333 (513)
                      |+.|+++++.  .++++......+..++..+..++..+..+...+...+
T Consensus       592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylI  640 (791)
T KOG1222|consen  592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLI  640 (791)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            9999999986  6677778888888888888666666666555544443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.27  E-value=3e-11  Score=125.36  Aligned_cols=240  Identities=20%  Similarity=0.218  Sum_probs=193.2

Q ss_pred             CChhHHHHhhcc-----C-------CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 010291            3 GGIPPLVELLEF-----T-------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI   69 (513)
Q Consensus         3 g~i~~Lv~lL~~-----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~~L   69 (513)
                      |++..+-+|++-     +       +..+|..|..+|.||..|+..++..+-. .|.+..+|..|.+...++.+..+.+|
T Consensus       339 G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvL  418 (2195)
T KOG2122|consen  339 GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVL  418 (2195)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHH
Confidence            667777776642     1       2468999999999999998888777654 68899999999988889999999999


Q ss_pred             HHhhcCChh-HHHHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhCCC----C
Q 010291           70 GNLVHSSPN-IKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSP----D  142 (513)
Q Consensus        70 ~~l~~~~~~-~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~----~  142 (513)
                      +||+...+. .++.+.+.|-+..|+..- ...........+.+||||+.++.+++..+.. .|++..|+..|...    .
T Consensus       419 RNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~t  498 (2195)
T KOG2122|consen  419 RNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNT  498 (2195)
T ss_pred             HhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcch
Confidence            999975544 466677789999988754 4455566778889999999888888876654 89999999999754    5


Q ss_pred             HHHHHHHHHHHHHHhhcc----ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCccccc
Q 010291          143 VQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQ  217 (513)
Q Consensus       143 ~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~  217 (513)
                      ..+.+.+-.+|.|++..-    +.|..+.+.+.+..|++.|++.+-.+..++|++||||+. +++.+..+          
T Consensus       499 LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L----------  568 (2195)
T KOG2122|consen  499 LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML----------  568 (2195)
T ss_pred             hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH----------
Confidence            578899999999988543    346677788999999999999999999999999999975 66555444          


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC
Q 010291          218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD  275 (513)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~  275 (513)
                                             ++.++++.|..++++.+..+-+.++.+|.|+....
T Consensus       569 -----------------------wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  569 -----------------------WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             -----------------------HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence                                   45567788889999988888899999999986543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1e-10  Score=112.83  Aligned_cols=271  Identities=16%  Similarity=0.102  Sum_probs=200.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC----CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----GALQPVIGLLSSCCSESQREAALLLGQFAATDSD  120 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  120 (513)
                      .++|.|.++|.+++....+.|..+|.+++.++.+.-+.-.-.    -.+|.++++.+++.+.+|..|..++....-..+.
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence            457889999999999999999999999999876643321111    2578889999999999999999999888744333


Q ss_pred             hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      .. ...-..+++.+..+-.+++++||.+.|.++..|......+-.---.+.++-+++..++.|.++...|+.....+|..
T Consensus       208 al-~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  208 AL-YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            22 22223577788888888999999999999999987666554333345666778888888999999999999999987


Q ss_pred             cchHHHHHh--hcCcccccchhh---------------------------------------------------------
Q 010291          201 EDNVADFIR--VGGVQKLQDGEF---------------------------------------------------------  221 (513)
Q Consensus       201 ~~~~~~~~~--~g~i~~L~~~~~---------------------------------------------------------  221 (513)
                      +..+..+..  .+.+|.|++...                                                         
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~  366 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF  366 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence            744333221  233443322000                                                         


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCC
Q 010291          222 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST  297 (513)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~  297 (513)
                      +....+.|-+.+++.+..++...+++.++.+|+.    .++.+|+.+..+++.++.+--.-..-.=...+|.|+++|.++
T Consensus       367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK  446 (885)
T KOG2023|consen  367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK  446 (885)
T ss_pred             ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC
Confidence            0123357888899999999999988888888876    678899999999999986532111000113689999999999


Q ss_pred             CcchhhhHHHHHHHhhhcc
Q 010291          298 NPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       298 ~~~v~~~a~~~L~~l~~~~  316 (513)
                      .+-+|.-+||+|.+.+...
T Consensus       447 kplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  447 KPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             ccceeeeeeeeHhhhhhhH
Confidence            9999999999999987653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.1e-09  Score=99.61  Aligned_cols=185  Identities=23%  Similarity=0.273  Sum_probs=160.3

Q ss_pred             cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291           14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   93 (513)
                      +.+.+-+..|+.-|..++. +-++...+...|+...++..+++.+..+|+.|+++|+..+.++|..+..+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3467889999999999997 789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhcccc-chhhHhc
Q 010291           94 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHN  169 (513)
Q Consensus        94 ~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~  169 (513)
                      ..+.+++ .+++..|..+++++.+..+.....+...++...|...+++  .+..++..++..+..+...... +..+...
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            9998755 5778999999999999999999999998899999999998  5778889999999999855443 4444445


Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          170 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      +....+..+....+.++.+.++.++..+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            556567788888888888888887776654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.12  E-value=4e-09  Score=108.44  Aligned_cols=288  Identities=19%  Similarity=0.147  Sum_probs=190.6

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      -+.+.+++++.+++...+.-+--++..+...+++....     ++..+.+-|.++++.+|..|+++|++++  +++..+.
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~  114 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP  114 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH
Confidence            46678888889999999999988899888866663332     3567777788999999999999999997  3444333


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                           .++.+.+++.++++.+|+.|+.++..+...+|+...   .. +++.+.+++.++++.++..|+.++..+ ..++.
T Consensus       115 -----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~  184 (526)
T PF01602_consen  115 -----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD  184 (526)
T ss_dssp             -----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred             -----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence                 478889999999999999999999999877665322   22 588999999999999999999999999 21111


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH--
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK--  240 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~--  240 (513)
                      ...-.-...+..|.+++...++..+..++..+..++........-  ...++.+.....  .........+.+.+..+  
T Consensus       185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~  260 (526)
T PF01602_consen  185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP  260 (526)
T ss_dssp             HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS
T ss_pred             hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc
Confidence            101112234555666778889999999999999998754432200  111112211111  01111112222222221  


Q ss_pred             ---hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          241 ---IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       241 ---~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                         .-..+++.|..++.++++.++..++..|..++...  ...+ . ..-..+..+..++++.++..+...|..++..
T Consensus       261 ~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  261 SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence               23456777888888777888888888888887654  1111 1 2223333333467778888888888887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=6.2e-07  Score=93.12  Aligned_cols=388  Identities=18%  Similarity=0.115  Sum_probs=228.0

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +.+-.+|+|+++..|..|+.+|+.++.|..+.-..... .+++..++.|+++++.||..|+.+++.++.+-...-+.-..
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~  429 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH  429 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence            44556778999999999999999999987665555333 47888889999999999999999999999877666566666


Q ss_pred             CCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChH-HHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           86 AGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        86 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      ...++.|+..+++. ++.++.+|+.++.|++...+...-.-.-.+++. .+..++.++.+.+++.++.+|+.++......
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~  509 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK  509 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence            77888999999874 679999999999999877665444333345666 3444556778999999999999998644433


Q ss_pred             hhhHhcCChHHHHHHhcCCC-H---HHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhh----hhhhhHHHHHHH
Q 010291          164 AGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEF----IVQATKDCVAKT  233 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~-~---~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~----~~~~~~~~~~~~  233 (513)
                      -.-.-...++.|.+.+...+ .   .++.....++.-++.  ..+...... ...+..+..+..    ..+....+....
T Consensus       510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a-~eliqll~~~~~~~~~~dd~~~sy~~~~  588 (1075)
T KOG2171|consen  510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA-EELIQLLLELQGSDQDDDDPLRSYMIAF  588 (1075)
T ss_pred             hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH-HHHHHHHHhhcccchhhccccHHHHHHH
Confidence            22222455666777776655 2   234444445544432  211111111 011111111111    111122333333


Q ss_pred             HHHHHHHhhhh-------hHHHHHHHHHH-hh-----------------------------------cchhhhHHHHHhh
Q 010291          234 LKRLEEKIHGR-------VLNHLLYLMRV-AE-----------------------------------KGVQRRVALALAH  270 (513)
Q Consensus       234 ~~~~~~~~~~~-------~l~~Lv~lL~~-~~-----------------------------------~~v~~~a~~aL~~  270 (513)
                      ..++-.+...+       +++.++.-.+- ++                                   .+-+..|+.+|+.
T Consensus       589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~  668 (1075)
T KOG2171|consen  589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGE  668 (1075)
T ss_pred             HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHH
Confidence            33333333322       23333222211 00                                   0114556777777


Q ss_pred             ccCCCCcceeeecCCchH-HHHhhhcCCCcchhhhHHHHHHHhhhccccccccCCCCCCCCCcccchhhcccCCCcccEE
Q 010291          271 LCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVT  349 (513)
Q Consensus       271 l~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~Dv~  349 (513)
                      ++........-.-..+++ .+..+.-.-+..+|..|+.++..+.+.....+                             
T Consensus       669 ~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~-----------------------------  719 (1075)
T KOG2171|consen  669 YAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKAC-----------------------------  719 (1075)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence            765433222111122334 23333345788999999999988876422111                             


Q ss_pred             EEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHh-----cCccccCHHHHHHHHHHHH
Q 010291          350 FLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIY-----TGSVDVTLDIAQDLLRAAD  424 (513)
Q Consensus       350 ~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~~~~~~~~~~~~~ll~~A~  424 (513)
                         .+...+     +..-..+|+.+..+...+         +...++...+++-++     .|...+.++....+...-.
T Consensus       720 ---~~~p~~-----l~~l~~~~~~~l~~~l~~---------E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~  782 (1075)
T KOG2171|consen  720 ---QGGPEY-----LKQLWEAIRPALIKALEE---------EPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLL  782 (1075)
T ss_pred             ---ccChHH-----HHHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHH
Confidence               011111     222333343333322111         123344444444444     2667788899999999988


Q ss_pred             HhcHHHHHHHHHHHHHh
Q 010291          425 QYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       425 ~~~~~~l~~~c~~~l~~  441 (513)
                      .......++.+...=..
T Consensus       783 ~~~l~~~~~~~~r~~~~  799 (1075)
T KOG2171|consen  783 AQLLQHFKRMQDRQEED  799 (1075)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            88888888877665543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.10  E-value=1.1e-09  Score=103.56  Aligned_cols=247  Identities=19%  Similarity=0.239  Sum_probs=167.7

Q ss_pred             HHHHHhhccCchhHHHHHhc---CCHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChhHHHHHHh------CCChHHHH
Q 010291           25 GALRTLAFKNDENKNQIVEC---NALPTLILMLR-S-EDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVI   93 (513)
Q Consensus        25 ~~L~~l~~~~~~~~~~i~~~---g~i~~Lv~lL~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~   93 (513)
                      ..+..+-....+.+..+++.   +....++++|+ . ++.++.+..+..+..+..+.+...+.+..      ......++
T Consensus        32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl  111 (312)
T PF03224_consen   32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL  111 (312)
T ss_dssp             HHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence            33444433233344444443   34667778887 3 78999999999999999988876666665      13678889


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----CCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      +++..+|..+...|+..|..+....+....... .+.++.+++.+++    ++.+.+..++.+|.+|...++.|..+.+.
T Consensus       112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            999999999999999999999877665443322 3556777777664    45667899999999999999999999999


Q ss_pred             CChHHHHHHh-----cC--CCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          170 GGLVPLLKLL-----DS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       170 ~~i~~L~~ll-----~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                      ++++.+..++     .+  .+.+++.+++.++|.|+.+++....+..                                 
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~---------------------------------  237 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK---------------------------------  237 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT---------------------------------
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc---------------------------------
Confidence            9999999999     22  2367889999999999999887666644                                 


Q ss_pred             hhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhhcC--CCcchhhhH
Q 010291          243 GRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGS--TNPKQQLDG  305 (513)
Q Consensus       243 ~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a  305 (513)
                      .++++.|+.+++. ....+-.-++.++.|++..+.  ....++..|+++.+..+...  +|+++....
T Consensus       238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence            3378888898887 566788889999999987665  66677777777777777654  677776553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.10  E-value=3.5e-09  Score=98.53  Aligned_cols=268  Identities=20%  Similarity=0.257  Sum_probs=199.1

Q ss_pred             CCChhHHHHhhccCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 010291            2 EGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      .|++..|++++++++.  +++.+|.+.|..+..  .++++.+...| ...++.+-+ ...++.....+.+|.++..++++
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            4788999999999874  569999999999884  68888888876 666666666 45788999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ..+.+++.|++..++...+..++.+.+.++.+|.|++-+ ..+.+..+++..+-++|..+-.+.|.-++.+||-+++.++
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla  335 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA  335 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999843 4466678899999999999988889999999999999999


Q ss_pred             hccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291          158 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL  237 (513)
Q Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~  237 (513)
                      .+.+....+..+|.+..+-.++.+-|+..-          +++..   ...+ |                          
T Consensus       336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~h---d~aQ-G--------------------------  375 (832)
T KOG3678|consen  336 TNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAH---DYAQ-G--------------------------  375 (832)
T ss_pred             hhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhh---hhhc-c--------------------------
Confidence            888887777778877665566655554421          11100   0000 0                          


Q ss_pred             HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC--CCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                         ...+.++.|+.+|++...+.|.-++.-++.=+.  ... ..+.+.+-|+|..|-++..+++.--..-|..+|.-+.+
T Consensus       376 ---~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  376 ---RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             ---CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence               123457788888887655555444433322211  112 23466777899999999887665555566666666554


Q ss_pred             c
Q 010291          315 K  315 (513)
Q Consensus       315 ~  315 (513)
                      .
T Consensus       453 E  453 (832)
T KOG3678|consen  453 E  453 (832)
T ss_pred             c
Confidence            3

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.10  E-value=6.8e-10  Score=100.01  Aligned_cols=136  Identities=25%  Similarity=0.335  Sum_probs=116.1

Q ss_pred             eeehhhHHHHhhcCHHHHHhccCCCCCCCC----CceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHhcHH-
Q 010291          355 RRFYAHRICLLASSDAFRAMFDGGYREKDA----RDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLE-  429 (513)
Q Consensus       355 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~----~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~-  429 (513)
                      .++|+|+.+++ |.+||+.||.|+|.|++.    +...+|.....+.+..++|+|+++.++.++-+.+++-.|+++.++ 
T Consensus       301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~  379 (516)
T KOG0511|consen  301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD  379 (516)
T ss_pred             ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence            45999999998 899999999999999652    245677788899999999999999999999999999999999776 


Q ss_pred             -H-HHHHHHHHHHhc---CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhh
Q 010291          430 -G-LKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI  491 (513)
Q Consensus       430 -~-l~~~c~~~l~~~---~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~  491 (513)
                       . |+......+.+.   ++.-|+.+++..+-....++|..++-.|+.+|+..+...|+|.......
T Consensus       380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s  446 (516)
T KOG0511|consen  380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS  446 (516)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence             2 555555555443   5666799999999999999999999999999999999999999875543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=9.4e-09  Score=93.74  Aligned_cols=163  Identities=25%  Similarity=0.328  Sum_probs=142.2

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      -|++.+++..+++++..+|..|+++|+.++++||..+..+.+.|+.+.|+..|.+ ++..++..|+.+++.+..+++...
T Consensus       123 ~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~  202 (342)
T KOG2160|consen  123 LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ  202 (342)
T ss_pred             ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence            3788899999999999999999999999999999999999999999999999984 566788999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           81 KEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      ..+...++...|...+.+  .+...+..++..+..+...+......+...++...+..+....+.++.+.+..++..+..
T Consensus       203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            999999999999999998  456778999999999998777777766677777777777777888899999888887775


Q ss_pred             ccccch
Q 010291          159 DMHNQA  164 (513)
Q Consensus       159 ~~~~~~  164 (513)
                      ....+.
T Consensus       283 ~~~~~~  288 (342)
T KOG2160|consen  283 ELSTRK  288 (342)
T ss_pred             HHhhcc
Confidence            444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=9.1e-09  Score=91.02  Aligned_cols=299  Identities=16%  Similarity=0.141  Sum_probs=199.3

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      ..-+..++++|.+.+|.++..|...+..++.+  ..+.... +...++.+.++++..++  .+.|+.+|.|++.+ +..+
T Consensus         2 ~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~   76 (353)
T KOG2973|consen    2 TSELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELR   76 (353)
T ss_pred             chHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHH
Confidence            34456789999999999999999999988864  2222222 23467888899886666  77788999999977 7777


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh------cCChHHHHHHhCCC-CH-HHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-DV-QLREMSAFA  152 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~~l~~~-~~-~~~~~a~~~  152 (513)
                      +.+++. .+..++..+.++...+....+..|.|+++.+......+..      .|.+.........+ +. .--.+.+..
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            777776 7778888888887888899999999999776655443322      44555444544443 21 233677889


Q ss_pred             HHHHhhccccchhhHhcCChHH--HHHHhcCCCHHH-HHHHHHHHHhcccCcchHHHHHhhc--CcccccchhhhhhhhH
Q 010291          153 LGRLAQDMHNQAGIAHNGGLVP--LLKLLDSKNGSL-QHNAAFALYGLADNEDNVADFIRVG--GVQKLQDGEFIVQATK  227 (513)
Q Consensus       153 L~~l~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~~~~~~~~~~  227 (513)
                      +.|++....+|..+.+...++.  ++.+-. .+..+ +...+++|.|.|.+...+..++..+  .++.+.-.        
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlP--------  226 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLP--------  226 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhh--------
Confidence            9999998888888877654332  444444 44444 4567889999999888877776522  11111000        


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHH-----HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcch
Q 010291          228 DCVAKTLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQ  301 (513)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~l~~Lv~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v  301 (513)
                        +++ .+.+++- +..-+|.=+++|.     .+++.++..-+.+|..||....+|..+...|+.+.+-.+-.. .++++
T Consensus       227 --lag-pee~sEE-dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  227 --LAG-PEELSEE-DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             --cCC-ccccCHH-HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHH
Confidence              000 0001000 1112333335554     268899999999999999999999999888887777777665 66677


Q ss_pred             hhhHHHHHHHhhhccccc
Q 010291          302 QLDGAVALFKLANKATTL  319 (513)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~  319 (513)
                      ++.+-...-.+.+..+..
T Consensus       303 ~~ace~vvq~Lv~~e~~~  320 (353)
T KOG2973|consen  303 REACEQVVQMLVRLEPEI  320 (353)
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            655555555455543333

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.4e-08  Score=95.01  Aligned_cols=312  Identities=15%  Similarity=0.158  Sum_probs=206.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++..|+..|...+.+........|..++. -.+++..+.+.|++..|+.+...++++++...+..|.|++.+ ...|..
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~K  381 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPK  381 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHH
Confidence            356778888988888888888999999988 679999999999999999999999999999999999999988 567889


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      +++.|.+|.+..++.++...  .-|...|..++ .+...+..+....+++.+++.+-+ .+.++-......-.|+|.+..
T Consensus       382 Mv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR  458 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSDTKH--GIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR  458 (791)
T ss_pred             HhhccchHHHHHHhCCcccc--hhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence            99999999999999876542  22455666664 445556666677888888876654 355554444555567777666


Q ss_pred             cchhhHhcCChHHHHHH------------h-------------------------cCC-CHHHHHHHHHHHHhcccCcch
Q 010291          162 NQAGIAHNGGLVPLLKL------------L-------------------------DSK-NGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~l------------l-------------------------~~~-~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      +.+.+.+-.++..|++.            +                         ... +......++++++||.-..-.
T Consensus       459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld  538 (791)
T KOG1222|consen  459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD  538 (791)
T ss_pred             cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence            55444443333332221            1                         111 123334455566666542222


Q ss_pred             HHHHH-hhcCcccccchh-h-------hhhhhHHHHHHHH--HHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhh
Q 010291          204 VADFI-RVGGVQKLQDGE-F-------IVQATKDCVAKTL--KRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAH  270 (513)
Q Consensus       204 ~~~~~-~~g~i~~L~~~~-~-------~~~~~~~~~~~~~--~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~  270 (513)
                      -..++ ....+|.+-... .       ..+..--|-..+.  ....-+..+++++.++++|+.  .+.+.......+...
T Consensus       539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q  618 (791)
T KOG1222|consen  539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ  618 (791)
T ss_pred             HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            23333 334444332100 0       0111111111111  111223567899999999998  566777777777777


Q ss_pred             ccCCCCcceeeecC-CchHHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291          271 LCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL  319 (513)
Q Consensus       271 l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  319 (513)
                      +...+..|..+++. ..-..|+.++.+.+.++|+-+-.+|--++.+...+
T Consensus       619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW  668 (791)
T KOG1222|consen  619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW  668 (791)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence            77665555544444 44577999999999999988888887777665433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.05  E-value=1.8e-08  Score=93.10  Aligned_cols=300  Identities=14%  Similarity=0.187  Sum_probs=206.1

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ++.+.+|...+.-+...+.++++.++......-.. .+.. ....+-..+++ .+++.+..+++||..+... ++.|-.+
T Consensus       117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~  194 (442)
T KOG2759|consen  117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAF  194 (442)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhee
Confidence            56678888888888888999999887632221111 0000 11233344553 6788888999999999977 6778888


Q ss_pred             HhCCChHHHHHhhc-C-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhcc
Q 010291           84 LAAGALQPVIGLLS-S-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        84 ~~~g~i~~L~~ll~-~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~  160 (513)
                      ...+++..++..+. + .+..+++..+.+++.|+.. |...+.+...+.++.|..++++. .++|.+.++.++.|+....
T Consensus       195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~  273 (442)
T KOG2759|consen  195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG  273 (442)
T ss_pred             eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88999999999883 2 4689999999999999855 55456667788999999999976 7789999999999999766


Q ss_pred             ccc---h----hhHhcCChHHHHHHhcCC---CHHHHHHH-------HHHHHhcccCcchHHHHHhhcCcccccchhhhh
Q 010291          161 HNQ---A----GIAHNGGLVPLLKLLDSK---NGSLQHNA-------AFALYGLADNEDNVADFIRVGGVQKLQDGEFIV  223 (513)
Q Consensus       161 ~~~---~----~~~~~~~i~~L~~ll~~~---~~~~~~~a-------~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~  223 (513)
                      +.+   +    .++. +.+++.++.|...   |+++....       -.-.-.|+.-++...++ ..|.+.-     ...
T Consensus       274 ~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl-~sG~L~W-----SP~  346 (442)
T KOG2759|consen  274 PDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSEL-RSGRLEW-----SPV  346 (442)
T ss_pred             chhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HhCCcCC-----Ccc
Confidence            432   2    2333 4445555555432   34433221       12223333333333332 2232210     012


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcch
Q 010291          224 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQ  301 (513)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v  301 (513)
                      +.....|..+...+.+. +-.++..|+.+|+.+ ||.+..-||.=++...+. |+++..+.+-||=+.+++++++++|+|
T Consensus       347 Hk~e~FW~eNa~rlnen-nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V  425 (442)
T KOG2759|consen  347 HKSEKFWRENADRLNEN-NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV  425 (442)
T ss_pred             ccccchHHHhHHHHhhc-cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence            22334555555555432 345889999999985 588888889999999874 778989999999999999999999999


Q ss_pred             hhhHHHHHHHhhhcc
Q 010291          302 QLDGAVALFKLANKA  316 (513)
Q Consensus       302 ~~~a~~~L~~l~~~~  316 (513)
                      +..|..|+..+..+.
T Consensus       426 ry~ALlavQ~lm~~~  440 (442)
T KOG2759|consen  426 RYHALLAVQKLMVHN  440 (442)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998887653

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.2e-08  Score=101.56  Aligned_cols=259  Identities=16%  Similarity=0.150  Sum_probs=191.6

Q ss_pred             hHHHHhhccC-CHHHHHHHHHHHHH-hhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            6 PPLVELLEFT-DTKVQRAAAGALRT-LAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         6 ~~Lv~lL~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      ..|++-|+.. ++..|.+|+.-|.. ++.++++.-..+--..++|.|+.+|++ .+.+++..|+++|.+|+.--|.....
T Consensus       170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~  249 (1051)
T KOG0168|consen  170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI  249 (1051)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence            3455555443 77788888776664 455666666655556789999999994 58999999999999999988888899


Q ss_pred             HHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           83 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      +++.++||.|+.-|- -...++.+.++.+|..+++..+   ..+.+.|.+...+..+.--...+++.|+.+..|+|..-.
T Consensus       250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999988654 4678999999999999986544   457788999999999987788899999999999996543


Q ss_pred             cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291          162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                      .-..-.-..++|.|..+|+..+.+..+.++-++..++..-....                             +.++.+.
T Consensus       327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~-----------------------------~kLdql~  377 (1051)
T KOG0168|consen  327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGP-----------------------------DKLDQLC  377 (1051)
T ss_pred             CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccCh-----------------------------HHHHHHh
Confidence            32222223578899999999999999999999998876322111                             1334445


Q ss_pred             hhhhHHHHHHHHHHhhc----chhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcC
Q 010291          242 HGRVLNHLLYLMRVAEK----GVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS  296 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~~~~----~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~  296 (513)
                      ..+.+....+++.....    .+.....+.+..+|++ +.....+.+.+....|..++..
T Consensus       378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            56666666676665422    2344455667777766 4466667777777888887764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=5.6e-09  Score=107.40  Aligned_cols=286  Identities=19%  Similarity=0.186  Sum_probs=192.6

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +..+..-|+++++.++..|++++++++.  ++....     +++.+.+++.++++.||+.|+.++.++....++.-.   
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---  150 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---  150 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---
Confidence            3556677889999999999999999984  554444     377888999999999999999999999877665421   


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      .. .++.+..++.+.++.++..|+.++..+ ..++.... -.-...++.|.+++..+++..+..++..+..++.......
T Consensus       151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~  227 (526)
T PF01602_consen  151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA  227 (526)
T ss_dssp             GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred             HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence            12 588899999999999999999999999 22222111 1122345666677788999999999999998875443322


Q ss_pred             hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhh-hHHHHHHHHHHHHHHhhh
Q 010291          165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA-TKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~  243 (513)
                      .-  ...+..+..++.+.++.+...++.++..+........     .+++.|.....+.+. .+-....++..+......
T Consensus       228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~-----~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~  300 (526)
T PF01602_consen  228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ-----KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP  300 (526)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred             hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH-----hhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence            10  3567778888888888899999999998877655222     222233322221111 222222233333111100


Q ss_pred             h--hHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc-CCCcchhhhHHHHHHHhhhcc
Q 010291          244 R--VLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       244 ~--~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      .  .....+..+. +.+..++..++..|..++...+...      .++.|.+.+. ..+++++..++..+..++...
T Consensus       301 ~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  301 AVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            0  2223344555 6888999999999999986544443      5788888884 458889999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.99  E-value=4.3e-08  Score=95.43  Aligned_cols=307  Identities=15%  Similarity=0.123  Sum_probs=222.1

Q ss_pred             hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCC
Q 010291           11 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA   88 (513)
Q Consensus        11 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   88 (513)
                      -+.+.+|+...+|..-..+.+.++++.+..+++.|.++.++.++..  +..+.......++..+....+.....+.+.+.
T Consensus        17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~   96 (678)
T KOG1293|consen   17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE   96 (678)
T ss_pred             hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence            3456788888899999999999999999999999999999999984  45667767777888888887888899999999


Q ss_pred             hHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhH--HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           89 LQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        89 i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      ++.|++++.+.+ ..++.....++.++.+.++....  .......++.+..+...+.......-+....+++.....+..
T Consensus        97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~I  176 (678)
T KOG1293|consen   97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLI  176 (678)
T ss_pred             HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhhe
Confidence            999999999988 78899999999999877654332  233344566666555535555666667777888887778888


Q ss_pred             hHhcCChHHHHHHhcCCCHHHHHHHHHHHH---hcccCcchH-HHHH----hhcCccc-----ccc-hhhhh--------
Q 010291          166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALY---GLADNEDNV-ADFI----RVGGVQK-----LQD-GEFIV--------  223 (513)
Q Consensus       166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~---~l~~~~~~~-~~~~----~~g~i~~-----L~~-~~~~~--------  223 (513)
                      +.+.|..+.+.-++...+...+..|+.+++   ++..+++.. ..+.    ..|..+.     |.. ..++.        
T Consensus       177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl  256 (678)
T KOG1293|consen  177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECL  256 (678)
T ss_pred             eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHH
Confidence            888888888888877777788888888888   555433322 2221    1121111     000 00000        


Q ss_pred             ----------------------------------------------hhhHHHHHH--------------HH---------
Q 010291          224 ----------------------------------------------QATKDCVAK--------------TL---------  234 (513)
Q Consensus       224 ----------------------------------------------~~~~~~~~~--------------~~---------  234 (513)
                                                                    ...-.|...              +.         
T Consensus       257 ~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~  336 (678)
T KOG1293|consen  257 VPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFI  336 (678)
T ss_pred             HHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHH
Confidence                                                          000000000              00         


Q ss_pred             ----------------------------------HHH---------------------------------------HHHh
Q 010291          235 ----------------------------------KRL---------------------------------------EEKI  241 (513)
Q Consensus       235 ----------------------------------~~~---------------------------------------~~~~  241 (513)
                                                        +.+                                       ....
T Consensus       337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~  416 (678)
T KOG1293|consen  337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK  416 (678)
T ss_pred             HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence                                              000                                       0002


Q ss_pred             hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ..++..+|++++..++.-++..++++|+|+... .+.+..++..|||+.+..++.+.++..+..+.|+|+++.-++.
T Consensus       417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d  493 (678)
T KOG1293|consen  417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD  493 (678)
T ss_pred             cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence            335778899999889999999999999999764 6677889999999999999999999999999999999986654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=8e-07  Score=88.31  Aligned_cols=289  Identities=14%  Similarity=0.187  Sum_probs=198.5

Q ss_pred             ChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh---
Q 010291            4 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP---   77 (513)
Q Consensus         4 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~---   77 (513)
                      -|+.|++-+.+. -.+-|+.|++.|..+++   ..|..+.. .|++++++.|..  .|+++...++.++.++....+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            367778777654 47889999999999997   55665544 468999999983  589999999999999986542   


Q ss_pred             ---hH----------HHHHH-hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHH-hcCChHHHHHHhCCC
Q 010291           78 ---NI----------KKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIV-QRGAVRPLIEMLQSP  141 (513)
Q Consensus        78 ---~~----------~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~~L~~~l~~~  141 (513)
                         +.          .+.++ ..+.|..++..++..|..||..+...+.++.+..+ +.++.+. .+-++..++.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence               11          12333 45789999999999999999999999999987665 4444443 466899999999999


Q ss_pred             CHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCC---C-HHHHHHHHHHHHhccc-CcchHHHHHhhcCccc
Q 010291          142 DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK---N-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK  215 (513)
Q Consensus       142 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~---~-~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~  215 (513)
                      ...+|..++..|..+..++.. ++.++-++++..|+.++...   + .-+.+.++..|.||-. +..++..+.+.+.|+.
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            999999999999999987766 55566688899999998753   2 3477888899999987 5556666666666665


Q ss_pred             ccchhhhhhhhH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-------CcceeeecCCch
Q 010291          216 LQDGEFIVQATK-DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGL  287 (513)
Q Consensus       216 L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-------~~~~~l~~~~~i  287 (513)
                      |.+......... ....++-.++   .+                  -..++.++..++...       .+++.+...+++
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv---~N------------------v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll  317 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRV---QN------------------VIEALQIVRSLVSPGNTSSITHQNQKALVSSHLL  317 (970)
T ss_pred             HHhhcCcccccCcccccccHHHH---HH------------------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchH
Confidence            543111000000 0000000000   00                  112223333333221       133466778889


Q ss_pred             HHHHhhhcCC--CcchhhhHHHHHHHhhhccc
Q 010291          288 ELLLGLLGST--NPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       288 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ..|..++.++  ..+++..+..++.+..+...
T Consensus       318 ~~Lc~il~~~~vp~dIltesiitvAevVRgn~  349 (970)
T KOG0946|consen  318 DVLCTILMHPGVPADILTESIITVAEVVRGNA  349 (970)
T ss_pred             HHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence            9999988774  44677777777877776654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.92  E-value=1.9e-07  Score=100.85  Aligned_cols=228  Identities=22%  Similarity=0.198  Sum_probs=138.4

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----   77 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-----   77 (513)
                      ++++.|++.|+++++.+|..|+.+|..+....+          ..+.+...|.++++.+|..|+.+|..+.....     
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~  721 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA  721 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence            457889999999999999999999988853111          12344455555555555555555544321100     


Q ss_pred             -------hHHHH----HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHH
Q 010291           78 -------NIKKE----VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR  146 (513)
Q Consensus        78 -------~~~~~----~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~  146 (513)
                             ..|..    +...+..+.|..++.++++++|..++.+|..+....+         ..++.|..+++++++.++
T Consensus       722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR  792 (897)
T PRK13800        722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVR  792 (897)
T ss_pred             HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHH
Confidence                   00000    0011223445556666666666666666666642211         236778888888888999


Q ss_pred             HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhh
Q 010291          147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT  226 (513)
Q Consensus       147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~  226 (513)
                      ..|+.+|.++....         ..+..+...+.++++.++..|+.+|..+.... ....+.         ....  +..
T Consensus       793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-a~~~L~---------~~L~--D~~  851 (897)
T PRK13800        793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAADV-AVPALV---------EALT--DPH  851 (897)
T ss_pred             HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-hHHHHH---------HHhc--CCC
Confidence            88888888874311         12245778888888889999999998875422 211111         1110  111


Q ss_pred             HHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhh
Q 010291          227 KDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAH  270 (513)
Q Consensus       227 ~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~  270 (513)
                      ......+...+..+ .+....+.|...+++.+..||..|..+|..
T Consensus       852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        852 LDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            22223333334333 355678889999999999999999999863

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2e-07  Score=93.09  Aligned_cols=193  Identities=21%  Similarity=0.236  Sum_probs=150.5

Q ss_pred             CChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      -.+|.|+.+|+++ +.+++..|+++|.+++.--|+....+++.++||.|+.-|. -+--++.++++.+|-.|++..+   
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---  287 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---  287 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence            3578999999875 6999999999999999988999999999999999997665 5678999999999999997543   


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ..+++.|++...+.+++-....+++.|+.+..|+|.. .++.-..++  ..+|.|..+|+..|.+..+.++-++..++..
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~  365 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADG  365 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            5678899999999999888889999999999999943 223233344  4799999999999999999999999999865


Q ss_pred             ccc----chhhHhcCChHHHHHHhcCCC----HHHHHHHHHHHHhcccC
Q 010291          160 MHN----QAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLADN  200 (513)
Q Consensus       160 ~~~----~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~  200 (513)
                      ...    -..+...+.+....+++.-..    ..+....++.+..+|.+
T Consensus       366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~  414 (1051)
T KOG0168|consen  366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG  414 (1051)
T ss_pred             cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence            533    233455566666666665332    23334445555555543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.89  E-value=5.8e-08  Score=91.87  Aligned_cols=207  Identities=17%  Similarity=0.220  Sum_probs=150.6

Q ss_pred             hHHHHhhc--cCCHHHHHHHHHHHHHhhccCchhHHHHHh------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 010291            6 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         6 ~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      ..++.+|+  +.++++....+..+..+...++.....+..      .....++++++..+|.-++..|+..|..+....+
T Consensus        58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence            44555554  367889999999999999877766666655      2367889999888999999999999999987655


Q ss_pred             hHHHHHHhCCChHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh------C-CCCHHHH
Q 010291           78 NIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML------Q-SPDVQLR  146 (513)
Q Consensus        78 ~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l------~-~~~~~~~  146 (513)
                      ....... .+.++.++..+.+    ++.+++..++.+|.++. ..++.|..+.+.++++.+.+++      . ..+..++
T Consensus       138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            5433211 3456777777664    44567789999999998 5578899999999999999999      2 2367889


Q ss_pred             HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcc--hHHHHHhhcCcc
Q 010291          147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNED--NVADFIRVGGVQ  214 (513)
Q Consensus       147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~  214 (513)
                      ++++.++|-|+.+++....+...+.++.|+++++.. .+++.+-++.++.|+.....  ....++..|+++
T Consensus       216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~  286 (312)
T PF03224_consen  216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK  286 (312)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence            999999999999999988898888888899888754 58899999999999998655  666666655433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.1e-07  Score=92.54  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      ++|.|.++|.+++...++.|..+|.++++++++.-..=..    .-.+|.++++.+++++.+|..|+.++..+.-.... 
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-  207 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-  207 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-
Confidence            5789999999999999999999999999865543332111    13588899999999999999999999888754322 


Q ss_pred             HHHHHhC-CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           80 KKEVLAA-GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        80 ~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                       ...... ..++.+..+-++.+++||+..|.+|..|....++.... .-.++++.++...++.|.++...||.....++.
T Consensus       208 -al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  208 -ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             -HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence             222221 24556666667889999999999999998665542211 124677778888888899999999999999998


Q ss_pred             ccccch
Q 010291          159 DMHNQA  164 (513)
Q Consensus       159 ~~~~~~  164 (513)
                      .+-.+.
T Consensus       286 qpi~~~  291 (885)
T KOG2023|consen  286 QPICKE  291 (885)
T ss_pred             CcCcHH
Confidence            774443

>PTZ00429 beta-adaptin; Provisional

Probab=98.83  E-value=4.7e-07  Score=93.76  Aligned_cols=217  Identities=16%  Similarity=0.085  Sum_probs=111.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh
Q 010291           48 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  127 (513)
Q Consensus        48 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  127 (513)
                      ..+.+=+.++|+.+|..|+++|+++-.  +...+.     .+..+.+.+.+.++-||+.|+.++.++...+++   .+.+
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~  177 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQ  177 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccc
Confidence            344444445555555555555555532  121111     234445555555566666666666665544332   1223


Q ss_pred             cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH
Q 010291          128 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF  207 (513)
Q Consensus       128 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  207 (513)
                      .|+++.|.+++.+.++.++.+|+.+|..+....+.+- -...+.+..|+..+.+.++..+...+.+|.......+.    
T Consensus       178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~----  252 (746)
T PTZ00429        178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE----  252 (746)
T ss_pred             cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH----
Confidence            4455555555555566666666666655553322211 11122333444444444455555555554332111000    


Q ss_pred             HhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecC---
Q 010291          208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG---  284 (513)
Q Consensus       208 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~---  284 (513)
                                                       ....++..+...|++.++.|...|++++.++....+ . .+.+.   
T Consensus       253 ---------------------------------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-~-~~~~~~~~  297 (746)
T PTZ00429        253 ---------------------------------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-Q-ELIERCTV  297 (746)
T ss_pred             ---------------------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-H-HHHHHHHH
Confidence                                             012467777888888889999999999988865321 0 01110   


Q ss_pred             CchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          285 GGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       285 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      ...+.|+.+ .++++++|.-+...+..+...
T Consensus       298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~  327 (746)
T PTZ00429        298 RVNTALLTL-SRRDAETQYIVCKNIHALLVI  327 (746)
T ss_pred             HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence            112445555 456778888877777666554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1.5e-07  Score=97.56  Aligned_cols=307  Identities=14%  Similarity=0.096  Sum_probs=185.1

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .++.|.+..+|+++..|+.|+.+|..+...-. ..+..+.  .+.+.+.+.+.+++..+|..|+++++.++...++.+..
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence            35566666788999999999999999976311 1111111  13455566677666569999999999998766433222


Q ss_pred             HHh-CCChHHHHHhh----cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHH
Q 010291           83 VLA-AGALQPVIGLL----SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGR  155 (513)
Q Consensus        83 ~~~-~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~  155 (513)
                      .-. ...+|.++..+    ..++.+....+..+|..+....+........ .++...+.+.++.  +..+|..|+..|..
T Consensus       197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs  275 (1075)
T KOG2171|consen  197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVS  275 (1075)
T ss_pred             HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            222 13455555544    4567777788888999998776654443322 3555555666554  78899999999999


Q ss_pred             Hhhccccchhh---HhcCChHHHHHHhcCCC----------------HHHHHHHHHHHHhcccCcch---HHHHHhhcCc
Q 010291          156 LAQDMHNQAGI---AHNGGLVPLLKLLDSKN----------------GSLQHNAAFALYGLADNEDN---VADFIRVGGV  213 (513)
Q Consensus       156 l~~~~~~~~~~---~~~~~i~~L~~ll~~~~----------------~~~~~~a~~~L~~l~~~~~~---~~~~~~~g~i  213 (513)
                      ++...+...+.   .-...++.++.++....                ......|..+|-.++.+-..   ...+.+  .+
T Consensus       276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~--~l  353 (1075)
T KOG2171|consen  276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE--AL  353 (1075)
T ss_pred             HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH--HH
Confidence            98774332111   11122344444443110                11344566677666653221   111111  12


Q ss_pred             ccccchhh---h---hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCC
Q 010291          214 QKLQDGEF---I---VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGG  285 (513)
Q Consensus       214 ~~L~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~  285 (513)
                      +.++....   .   .-.......++-+.+.. .-..+++.++..|+++++.||.+|+.+++.++.+  ++-. .-...-
T Consensus       354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~  431 (1075)
T KOG2171|consen  354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHER  431 (1075)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHh
Confidence            22221000   0   00111111222222222 2345788889999999999999999999999875  3322 223344


Q ss_pred             chHHHHhhhcC-CCcchhhhHHHHHHHhhhccc
Q 010291          286 GLELLLGLLGS-TNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       286 ~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .++.|+..+.+ .++.++..|+.++.+++....
T Consensus       432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~  464 (1075)
T KOG2171|consen  432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECD  464 (1075)
T ss_pred             ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence            67788888887 778999999999999988765

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.79  E-value=8.1e-07  Score=86.76  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=123.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291           56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  135 (513)
Q Consensus        56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  135 (513)
                      ..+.+++..|+-++.+++..-...+.-+....+..++++++.+++..+...+..+++|+.......+..++..|+++.+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            46778899999999888876555555555667999999999999999999999999999988888899999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhccccchhhH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIA--HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      +.+.++++.++..+.|+|+++..+.+...+..  ..=....+..+..++++.+++.+...+.|+..+.
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999998776644332  2223344788889999999999999999997653

>PTZ00429 beta-adaptin; Provisional

Probab=98.78  E-value=8.7e-07  Score=91.82  Aligned_cols=287  Identities=14%  Similarity=0.033  Sum_probs=178.9

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +..+.+-++++||.+|-.|+++++.+-.  ++..+.     +++.+.+.|.+.++.||+.|+.++.++-..+++   .+.
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~  176 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY  176 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence            4455666677888888888888887764  232222     356677888899999999999999999865553   334


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      +.|.++.|..++.+.++.+..+|+.+|..+...++...  -...+.+..++..+.+-++..+...+.+|....  +....
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~  252 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKE  252 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcH
Confidence            56788899999999999999999999999986655321  223456777888888778888877777775432  22211


Q ss_pred             hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc--chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                      ..  ...+..+...+++.++.+...|+.++.++....  +....... ....+++.+..+....+-.+..++..+.... 
T Consensus       253 e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~-  328 (746)
T PTZ00429        253 SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRRDAETQYIVCKNIHALLVIF-  328 (746)
T ss_pred             HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCCCccHHHHHHHHHHHHHHHC-
Confidence            11  245666788888999999999999999988642  22222211 1112222221111112212222222221111 


Q ss_pred             hhhHHHHHHHH---HHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          243 GRVLNHLLYLM---RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       243 ~~~l~~Lv~lL---~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      ..++..-+...   .+....++...+.+|..++...+...      .+..|.+...+.+.+++.++..++.+++.+
T Consensus       329 P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        329 PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPE------ILKELAEYASGVDMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence            12222212211   11223467788888888775544332      235566666677778888888888888765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.3e-06  Score=76.70  Aligned_cols=282  Identities=15%  Similarity=0.152  Sum_probs=196.4

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhH----HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      |.|-+-|..++..++.-++..++.+..+.+.+.    ..+++.|+.+.++.++..++.++...|...+..++.. +..-.
T Consensus        85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paale  163 (524)
T KOG4413|consen   85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALE  163 (524)
T ss_pred             HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHH
Confidence            344444556788899999999999988655332    2345789999999999999999999999999999976 55567


Q ss_pred             HHHhCCChHHH--HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Q 010291           82 EVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        82 ~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~  158 (513)
                      .+++......+  .++-...+.-.|......+..+.+.+++.....-.+|.+..|..-++. .|.-++.++......|+.
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            77776655544  333334455567777888888988888888888899999999888877 677888999999999999


Q ss_pred             ccccchhhHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHH
Q 010291          159 DMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR  236 (513)
Q Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~  236 (513)
                      ....++.+.+.|.++.+..++...+  +--.-.++-..+.+-. .++.....+......                     
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg-keaimdvseeaicea---------------------  301 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG-KEAIMDVSEEAICEA---------------------  301 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc-chHHhhcCHHHHHHH---------------------
Confidence            9999999999999999988886544  2222222222222211 111111000000000                     


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCc--hHHHHhhh-cCCCcchhhhHHHHHHHhh
Q 010291          237 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG--LELLLGLL-GSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       237 ~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~--i~~L~~ll-~~~~~~v~~~a~~~L~~l~  313 (513)
                           -.-++...+......|++.++.|..+++.+-++.++...+.+.|-  ...++.-. ..+...-+..+..+|.+++
T Consensus       302 -----liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  302 -----LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             -----HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence                 011344556677788999999999999999998888877777664  23333322 3344455677788888877


Q ss_pred             hc
Q 010291          314 NK  315 (513)
Q Consensus       314 ~~  315 (513)
                      ..
T Consensus       377 ge  378 (524)
T KOG4413|consen  377 GE  378 (524)
T ss_pred             cc
Confidence            54

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.70  E-value=1.1e-06  Score=84.61  Aligned_cols=231  Identities=15%  Similarity=0.083  Sum_probs=170.1

Q ss_pred             CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC-----CChHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q 010291           45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-----GALQPVIGLLSSCCSESQREAALLLGQFAATD  118 (513)
Q Consensus        45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  118 (513)
                      ..+..++++|+ ..+.++.+..+..+..+..+.+.....+.+.     .....++.+|..++.-+...++..|..+...+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            45778888888 5678999999999999998877766666653     56788888999888899999999999998654


Q ss_pred             chhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC--CHHHHHHHHHHHH
Q 010291          119 SDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALY  195 (513)
Q Consensus       119 ~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~  195 (513)
                      +.........-..+.+...++.+ +...+..|+.+|.+|...++.|..+.+.++++.|+.+++..  +.+.+..++.++|
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            43222111112445666777654 46788889999999999999999999989999999999763  4578899999999


Q ss_pred             hcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCC
Q 010291          196 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP  274 (513)
Q Consensus       196 ~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~  274 (513)
                      -|+.+++....+                                 ...++++.|+.+++. ....+-.-++.++.|+...
T Consensus       213 lLSF~~~~~~~~---------------------------------~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         213 LLTFNPHAAEVL---------------------------------KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             HHhccHHHHHhh---------------------------------ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            999987643322                                 235678888898887 5567777888899999764


Q ss_pred             CC-------cceeeecCCchHHHHhhhcC--CCcchhhhHHHH
Q 010291          275 DD-------QRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVA  308 (513)
Q Consensus       275 ~~-------~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~  308 (513)
                      +.       ....+++.|..+.+..+...  +++++.......
T Consensus       260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L  302 (429)
T cd00256         260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL  302 (429)
T ss_pred             ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            31       22355565665555555543  777776554443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.1e-05  Score=80.33  Aligned_cols=273  Identities=14%  Similarity=0.099  Sum_probs=177.0

Q ss_pred             ChhHHHHhh----ccCCH-HHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcC
Q 010291            4 GIPPLVELL----EFTDT-KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHS   75 (513)
Q Consensus         4 ~i~~Lv~lL----~~~~~-~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~   75 (513)
                      ..|.|+..|    ..+.+ .++..++.+|+.+|.+ +++ ...-..+.++..++.-.+  .++..+|..|+.+|.+-...
T Consensus       126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef  204 (859)
T KOG1241|consen  126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF  204 (859)
T ss_pred             hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence            344455544    33333 4889999999999985 233 111122345666776665  45789999999999887532


Q ss_pred             ChhH-HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           76 SPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        76 ~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      ...+ ....-..-+++...+.-.+++.+++..|..+|..+.+-.-+....-+.......-+..++++++++...+...-+
T Consensus       205 ~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWs  284 (859)
T KOG1241|consen  205 TKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWS  284 (859)
T ss_pred             HHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            2211 111112235566666777899999999999999998654444444445556666778888999999999999999


Q ss_pred             HHhhcccc----chhhHhc---------------CChHHHHHHhcCC-------CHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          155 RLAQDMHN----QAGIAHN---------------GGLVPLLKLLDSK-------NGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       155 ~l~~~~~~----~~~~~~~---------------~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      ++|..+-+    -....+.               +.+|.|+++|...       +......|..+|.-++.         
T Consensus       285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---------  355 (859)
T KOG1241|consen  285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---------  355 (859)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---------
Confidence            88854322    0111111               2344455555431       12333333334433332         


Q ss_pred             hhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhhcchhhhHHHHHhhccCCCC-cceeeec
Q 010291          209 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDD-QRTIFID  283 (513)
Q Consensus       209 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~----~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~  283 (513)
                                                     ....+++++++.+.+    ++++.-+..|+.+++.+-.+++ .+..-..
T Consensus       356 -------------------------------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV  404 (859)
T KOG1241|consen  356 -------------------------------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV  404 (859)
T ss_pred             -------------------------------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence                                           223334555555555    4788889999999999987765 4445556


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .+++|.++.++.+++--++..++|++++++....
T Consensus       405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            7899999999998888889999999999998754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=2.2e-06  Score=82.22  Aligned_cols=314  Identities=13%  Similarity=0.085  Sum_probs=200.0

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ++.+++++..+++.+..+|.-||..+.|++.. ........-..+...+.++..+.+..++..| ..|-.+..+-...++
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence            56789999999999999999999999999973 2222222223445666677667777766544 444444322111111


Q ss_pred             -HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           82 -EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        82 -~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                       .+--.+.+|.|-+-+..-++..|......|.-+-+. |.....-.-..+++.|...|.+++++++..+-.++.++-..-
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence             111123445555555567889999999998888533 432222233567888999999999999988888887776433


Q ss_pred             ccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhh----cCcccccchhh-hhhhhHHHHHHHH
Q 010291          161 HNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV----GGVQKLQDGEF-IVQATKDCVAKTL  234 (513)
Q Consensus       161 ~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~i~~L~~~~~-~~~~~~~~~~~~~  234 (513)
                      .+.....+ ...++.++.-+.++++.++..|+.-+..+..-....--..-.    ++++.+.+... +....+....+.+
T Consensus       240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l  319 (675)
T KOG0212|consen  240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL  319 (675)
T ss_pred             hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence            33333222 345667888889999999999888777776533222222222    33333333222 1221122222111


Q ss_pred             HHHH-------HHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHH
Q 010291          235 KRLE-------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV  307 (513)
Q Consensus       235 ~~~~-------~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  307 (513)
                      ..+.       ++.-..++.-+...+.+...+.|..++.-+..+-...+++-........+.|+.-+.++++++...+..
T Consensus       320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~  399 (675)
T KOG0212|consen  320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS  399 (675)
T ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence            1111       111123566677777778888999999988888777666666666777899999999999999999999


Q ss_pred             HHHHhhhcccc
Q 010291          308 ALFKLANKATT  318 (513)
Q Consensus       308 ~L~~l~~~~~~  318 (513)
                      .+.+++.....
T Consensus       400 lla~i~~s~~~  410 (675)
T KOG0212|consen  400 LLASICSSSNS  410 (675)
T ss_pred             HHHHHhcCccc
Confidence            99999876543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.51  E-value=1.8e-06  Score=80.91  Aligned_cols=176  Identities=20%  Similarity=0.208  Sum_probs=147.2

Q ss_pred             hhHHHHHhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHH
Q 010291           36 ENKNQIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLG  112 (513)
Q Consensus        36 ~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~  112 (513)
                      ..+..+...|++..|++++..++.  .+|..|.+.|-.+..  .++++.+...| +..++.+-. ....+..+..+.+|.
T Consensus       171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence            345667788999999999998765  459999999999875  45678887776 555555544 345788999999999


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccchhhHhcCChHHHHHHhcCCCHHHHHHH
Q 010291          113 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA  190 (513)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  190 (513)
                      ++..++++....++..|+++.++-..+..+|.+..+|+.+|.|++-+  ...++.+++..+..-|..+..+.|+-.+.+|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            99999899889999999999999999999999999999999999844  3568889998888889999988999999999


Q ss_pred             HHHHHhcccCcchHHHHHhhcCcc
Q 010291          191 AFALYGLADNEDNVADFIRVGGVQ  214 (513)
Q Consensus       191 ~~~L~~l~~~~~~~~~~~~~g~i~  214 (513)
                      +.+++.++.+.+..+++.+.|.+.
T Consensus       328 ClAV~vlat~KE~E~~VrkS~Tla  351 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLA  351 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchh
Confidence            999999999888877777777543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=4.8e-06  Score=85.34  Aligned_cols=181  Identities=16%  Similarity=0.165  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-   98 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-   98 (513)
                      |.+|+..|+.+..-.+-....-...|+.|..+++|+++-.++|..-+.+-..+..-.+.++..+++.++-..+++.|.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            6778888888887667677777788999999999999999999988888888766658888888888888888888876 


Q ss_pred             C--ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccchhh-HhcCChHH
Q 010291           99 C--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGI-AHNGGLVP  174 (513)
Q Consensus        99 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~  174 (513)
                      .  +++-+..|+.+|..++.+.+-.+....+.+.+...+..+.++ .+-++..++-+|+.|-.+.+..+.. .+.++-..
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            2  358899999999999998888888899999999999999985 7889999999999999877654443 45678889


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          175 LLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       175 L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      |..+|.++-++++.+|+.+|+.+-.+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999998763

>TIGR02270 conserved hypothetical protein

Probab=98.50  E-value=1.3e-05  Score=77.78  Aligned_cols=238  Identities=17%  Similarity=0.056  Sum_probs=168.9

Q ss_pred             ChhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++.++..|. .+++.++..++.++.....  +         .++..++..|.+.++.++..++.+|+.+-.  +     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence            4677888884 5667777766666543321  1         138899999999999999999999987632  2     


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                          +..+.|+.++.+.++.++..++.++....            ....+.+..+++++++.++..|+.+|+.+..    
T Consensus       117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----  176 (410)
T TIGR02270       117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR----  176 (410)
T ss_pred             ----HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence                35778899999999999988887776632            1235678899999999999999999998753    


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh----hcCcccccchhhhhhhhHHHHHHHHHHHH
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR----VGGVQKLQDGEFIVQATKDCVAKTLKRLE  238 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  238 (513)
                            ...++.|...+.+.++.++..|++++..+.. +.....+..    .|. +.              .......+.
T Consensus       177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~-~~--------------~~~l~~~la  234 (410)
T TIGR02270       177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGG-PH--------------RQRLLVLLA  234 (410)
T ss_pred             ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCc-cH--------------HHHHHHHHH
Confidence                  2456668888999999999999999988754 222221111    111 10              000001111


Q ss_pred             HHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       239 ~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .......++.|..+++++.  ++..++.+++.+-          ....++.|+..+.+..  ++..|..++..+..-
T Consensus       235 l~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       235 VAGGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             hCCchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            1134467888888888755  8999999998663          3457888999887644  899999999988754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.49  E-value=2.5e-06  Score=66.16  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=103.5

Q ss_pred             cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291           14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   93 (513)
                      ..+.+.+++...-|.|++. +|.+...+.+..+++.++..|..+|..+.+.+++.|+|+|.+ +.+.+.+.+.++++.++
T Consensus        28 tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii  105 (173)
T KOG4646|consen   28 TTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLII  105 (173)
T ss_pred             hccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEE
Confidence            3578889999999999997 899999999999999999999999999999999999999988 67788999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  135 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  135 (513)
                      ..+.++.......++.++..|+.+.-..+..+....++..+.
T Consensus       106 ~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~  147 (173)
T KOG4646|consen  106 FVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ  147 (173)
T ss_pred             eecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence            999999999999999999999866555555555444444333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.45  E-value=1.5e-05  Score=74.20  Aligned_cols=229  Identities=18%  Similarity=0.206  Sum_probs=160.5

Q ss_pred             HHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            8 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         8 Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      |-..+++ .+++...-|+++|..+.. .++.|-.++...++..++..+.  ..+-.++-..+.|+|.|+.+ +...+.+.
T Consensus       161 l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~  238 (442)
T KOG2759|consen  161 LKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLK  238 (442)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHh
Confidence            3445554 567788889999999998 7899999999999999999884  34677899999999999977 55557777


Q ss_pred             hCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCc------hhhHHHHhcCChHHHHHHhCC---CCHHHHHHHHHHHH
Q 010291           85 AAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS------DCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALG  154 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~  154 (513)
                      ..+.++.|..++... ...|.+-++.++.|++...+      .....++..++.+. ++.|..   +|+++....-..-.
T Consensus       239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e  317 (442)
T KOG2759|consen  239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTE  317 (442)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHH
Confidence            778999999999865 47788999999999997764      23344555555544 444443   36665543332222


Q ss_pred             HHhhc----------------------cccc---------hhhHhc--CChHHHHHHhcCCC-HHHHHHHHHHHHhccc-
Q 010291          155 RLAQD----------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-  199 (513)
Q Consensus       155 ~l~~~----------------------~~~~---------~~~~~~--~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~-  199 (513)
                      .|-..                      +..+         ..+.+.  ..+..|+++|..++ +.+...|+.-++...+ 
T Consensus       318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~  397 (442)
T KOG2759|consen  318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH  397 (442)
T ss_pred             HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence            22110                      1111         111111  12566888887765 7777888888888887 


Q ss_pred             CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291          200 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       200 ~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~  272 (513)
                      +|+.+..+.+.                                 |+=..++.+|.++|++|+.+|+.|+..+.
T Consensus       398 yP~gk~vv~k~---------------------------------ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  398 YPEGKAVVEKY---------------------------------GGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             CchHhHHHHHh---------------------------------chHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            55555444443                                 35567889999999999999999987664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=5.3e-06  Score=85.05  Aligned_cols=200  Identities=16%  Similarity=0.155  Sum_probs=166.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-C--CHHHHHHHHHHHHHhhcCChh
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-E--DSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~--~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      -|+.|-++.+|+++-.+++---+.+-.++..-++..+..+++.++-..+++.|.. +  +++-|..|+.+|..++.+...
T Consensus       511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l  590 (1387)
T KOG1517|consen  511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL  590 (1387)
T ss_pred             cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence            3889999999999999998888888888876678889999999999999999985 2  468899999999999999888


Q ss_pred             HHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           79 IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      .++...+.+.+..-+..++++ .+=+++.++.+|+.|..+.++.+..-.+.++.+.|+.+|+++-++||..|+.+|+.+.
T Consensus       591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl  670 (1387)
T KOG1517|consen  591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL  670 (1387)
T ss_pred             hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence            888888999999889999885 6778999999999999999999988889999999999999999999999999999998


Q ss_pred             hcc----ccchhhH------------hcCCh----HHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          158 QDM----HNQAGIA------------HNGGL----VPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       158 ~~~----~~~~~~~------------~~~~i----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      .+.    +.+....            -+..+    ..++.+++.+.+-++.....+|..+....
T Consensus       671 ~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  671 SNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             cccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            752    2222111            11122    25677778888888888888888877643

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=4e-05  Score=76.66  Aligned_cols=215  Identities=19%  Similarity=0.241  Sum_probs=163.5

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCc---
Q 010291           46 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDS---  119 (513)
Q Consensus        46 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~---  119 (513)
                      -|+.|+.-..+ .=.+-|+.|++.|-.+++   ..|..+. ..|++++++.|..  .|+++...++.++.++.+.++   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            36666665553 346679999999999984   4455544 4568888898876  478999999999999987653   


Q ss_pred             ---hhh----------HH-HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhH-hcCChHHHHHHhcCC
Q 010291          120 ---DCK----------VH-IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIA-HNGGLVPLLKLLDSK  182 (513)
Q Consensus       120 ---~~~----------~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~-~~~~i~~L~~ll~~~  182 (513)
                         ..+          +. +-..+.+..++..+...|-.+|..++..+.++-...+.  +..+. ..-+|..|+.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence               111          12 23477889999999999999999999999999865543  44444 467899999999999


Q ss_pred             CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-h--h-c
Q 010291          183 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-A--E-K  258 (513)
Q Consensus       183 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~--~-~  258 (513)
                      ...++..++..|..++++.....+++.                                =.+++..|+.++.. +  + .
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVA--------------------------------FENaFerLfsIIeeEGg~dGg  226 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVA--------------------------------FENAFERLFSIIEEEGGLDGG  226 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHH--------------------------------HHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999987766555432                                34567788888877 2  2 2


Q ss_pred             chhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcC
Q 010291          259 GVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS  296 (513)
Q Consensus       259 ~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~  296 (513)
                      -|...++..|.||-... .++..+.+.+.||.|..++..
T Consensus       227 IVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~  265 (970)
T KOG0946|consen  227 IVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV  265 (970)
T ss_pred             chHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence            46777888888988754 488899999999999988864

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=3e-05  Score=72.43  Aligned_cols=259  Identities=17%  Similarity=0.187  Sum_probs=185.8

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----h----hHHHHHHhCCChHHH
Q 010291           22 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-----P----NIKKEVLAAGALQPV   92 (513)
Q Consensus        22 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L   92 (513)
                      ..++-+.-++. -|+....+++.++++.|+++|.++|.++....+..|..++...     .    ..-+.+++.++++.|
T Consensus       103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            34555666665 7889999999999999999999999999999999999998321     1    234567778899999


Q ss_pred             HHhhcCCCh------HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccc-cc
Q 010291           93 IGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-NQ  163 (513)
Q Consensus        93 ~~ll~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~-~~  163 (513)
                      ++-++.-+.      +-.......+.|+....+.....+++.|.+.+|++.+...  -..-..+|..+|.-+..++. ++
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            998875333      4456677889999988898888889999999999866543  34556778888888886665 67


Q ss_pred             hhhHhcCChHHHHHHhc----CC-----CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291          164 AGIAHNGGLVPLLKLLD----SK-----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  234 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~----~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  234 (513)
                      ..+....+++.+++-+.    ++     ..+..++...+|+.+-..+.++..++...++.                    
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq--------------------  321 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ--------------------  321 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH--------------------
Confidence            77777888888776653    11     24566777788888888899988888665543                    


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC---cceeeecCCchHHHHhhhc-CCCc---------ch
Q 010291          235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG-STNP---------KQ  301 (513)
Q Consensus       235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~---~~~~l~~~~~i~~L~~ll~-~~~~---------~v  301 (513)
                                    |..++.......+..++++|-+...+++   ++..+++.+|+..++.+.. .+.+         +.
T Consensus       322 --------------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~  387 (536)
T KOG2734|consen  322 --------------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEH  387 (536)
T ss_pred             --------------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHH
Confidence                          2233333344457788888888877655   5667788888877776554 2222         22


Q ss_pred             hhhHHHHHHHhhhc
Q 010291          302 QLDGAVALFKLANK  315 (513)
Q Consensus       302 ~~~a~~~L~~l~~~  315 (513)
                      -+..+..|+.+...
T Consensus       388 eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  388 EEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHHHHHHHHHh
Confidence            24455556665543

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=98.41  E-value=2.1e-06  Score=74.50  Aligned_cols=94  Identities=30%  Similarity=0.463  Sum_probs=80.3

Q ss_pred             EEEEecCeeehhhHHHHhhcCHHHHHhccCCCC-C-CCCCceecCCCCHHHHHHHHHHHhcCccccC--HHHHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR-E-KDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA  423 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~-e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~ll~~A  423 (513)
                      +.+.|||..|..++.-|.....||+.|+.+++. + ...+.|-++. +|.-|+.+|+||-.|++.++  ...+.+|+.-|
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR-SpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA   85 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR-SPKHFDTILNFMRDGDVDLPESEKELKELLREA   85 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC-ChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence            557899999999999999999999999998764 2 2334566654 99999999999999988865  55688999999


Q ss_pred             HHhcHHHHHHHHHHHHHhc
Q 010291          424 DQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       424 ~~~~~~~l~~~c~~~l~~~  442 (513)
                      .+|.+++|.+.|...+...
T Consensus        86 ~fYlL~~Lv~~C~~~i~~~  104 (230)
T KOG2716|consen   86 EFYLLDGLVELCQSAIARL  104 (230)
T ss_pred             HHhhHHHHHHHHHHHhhhc
Confidence            9999999999999987665

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=7.4e-06  Score=78.24  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=148.2

Q ss_pred             HHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCC
Q 010291           21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  100 (513)
Q Consensus        21 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  100 (513)
                      ..++.+|..+++.-.-.|..+.+..+.+.|+++|.+++..+.-.+...++|+.....+.+..+.+.|++..|+.++.+.|
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            34566777777755567778888899999999999887777888889999999888889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCchh-hHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc----chhhHhc---C-C
Q 010291          101 SESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHN---G-G  171 (513)
Q Consensus       101 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~---~-~  171 (513)
                      ..++.+..|.|+.+..++.+. +-.....-+++.++++.++++-.+++.+...|+|+..+..-    +..+.+.   . .
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            999999999999998766544 34667778899999999999999999999999999864322    2111111   1 2


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          172 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       172 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      ...|++.+...++-.....+..|.+++...++...++
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence            3346677777777767777888888887666655544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.38  E-value=2.9e-07  Score=91.53  Aligned_cols=67  Identities=28%  Similarity=0.473  Sum_probs=55.7

Q ss_pred             CCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCC--C----------CCCceecCCCCHHHHHHHHHHHhcCcc
Q 010291          343 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--K----------DARDIEIPNIRWEVFELMMRFIYTGSV  409 (513)
Q Consensus       343 ~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~----------~~~~i~l~~~~~~~~~~~l~~~Y~~~~  409 (513)
                      ..+.||+|.||+..|++||.||++||+|||++|-...+.  +          ....|.+.++++..|+.+|+||||+..
T Consensus       556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~  634 (1267)
T KOG0783|consen  556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL  634 (1267)
T ss_pred             cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence            457799999999999999999999999999999653222  1          123566889999999999999999854

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=2.1e-05  Score=78.77  Aligned_cols=268  Identities=18%  Similarity=0.165  Sum_probs=164.1

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      +..-|++++.-++-.|+-+|++++.  ++....     ..|.+.++|++.++.+|+.|+.|...+-...++..+.+    
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f----  180 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF----  180 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh----
Confidence            4455677888889999999999985  444333     46778889999999999999999999988877765443    


Q ss_pred             ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---------------CCCHHHHHHHHHH
Q 010291           88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------------SPDVQLREMSAFA  152 (513)
Q Consensus        88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------------~~~~~~~~~a~~~  152 (513)
                       ++....+|.+.+..|.-.+...+..+|..+++......+  .++.|+..|+               -+||-++...++.
T Consensus       181 -~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl  257 (866)
T KOG1062|consen  181 -VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL  257 (866)
T ss_pred             -hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence             445555666666666666666666666555544333332  4455555543               1356666666666


Q ss_pred             HHHHhhccccchhhHh------------------c---CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhc
Q 010291          153 LGRLAQDMHNQAGIAH------------------N---GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  211 (513)
Q Consensus       153 L~~l~~~~~~~~~~~~------------------~---~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g  211 (513)
                      |+-|..++.+....+.                  .   ..+..++.+  .++...+..|+.+|+.+-.++++....+...
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            6666655444222111                  0   011111111  2356777788888888777666555444433


Q ss_pred             CcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHH
Q 010291          212 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  291 (513)
Q Consensus       212 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~  291 (513)
                      .+..++....+.-                  ..-=..++++|+++|..+|..|...+..|....+.+.      .+..|+
T Consensus       336 ~L~r~V~~d~~av------------------qrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl  391 (866)
T KOG1062|consen  336 MLLRVVQQDPTAV------------------QRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELL  391 (866)
T ss_pred             hHHhhhcCCcHHH------------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence            3333322111100                  0112346778888888888888887777765444332      346677


Q ss_pred             hhhcCCCcchhhhHHHHHHHhhhc
Q 010291          292 GLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       292 ~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .+|.+.+++.+...+.-+..++..
T Consensus       392 ~fL~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  392 EFLESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHh
Confidence            777777888887777777777654

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.33  E-value=1.4e-06  Score=75.57  Aligned_cols=98  Identities=22%  Similarity=0.315  Sum_probs=73.8

Q ss_pred             eeehhhHHHHhhcCHHHHHhccCCCCCCC---------CCceecCC-CCHHHHH-HHHHHHhcCccccC-----------
Q 010291          355 RRFYAHRICLLASSDAFRAMFDGGYREKD---------ARDIEIPN-IRWEVFE-LMMRFIYTGSVDVT-----------  412 (513)
Q Consensus       355 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~---------~~~i~l~~-~~~~~~~-~~l~~~Y~~~~~~~-----------  412 (513)
                      ..+.+|+.|.++||++||.++.....|..         ...|.+++ |=|..|. .+++++||+.++++           
T Consensus       261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS  340 (401)
T KOG2838|consen  261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS  340 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence            46899999999999999999965443322         23455554 4555554 78999999987631           


Q ss_pred             -----------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHH
Q 010291          413 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMY  452 (513)
Q Consensus       413 -----------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~  452 (513)
                                       ...+.+++++|-+|.++.|.+.|+..+......++...++
T Consensus       341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~cL  397 (401)
T KOG2838|consen  341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGCL  397 (401)
T ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence                             2456789999999999999999999998877777665544

>TIGR02270 conserved hypothetical protein

Probab=98.32  E-value=7.3e-05  Score=72.53  Aligned_cols=122  Identities=18%  Similarity=0.083  Sum_probs=94.7

Q ss_pred             CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      .+++.++..|. +++++++..++.++...  +.+.         ++..++..+.+.++.++..++.+|+.+-  ++    
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence            36888999995 67788888776665422  2121         3788999999999999999999998773  22    


Q ss_pred             HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                           +..+.|+.+++++++.++..++.++....           ....+.+..++++.++.++..|+.+|+.+..
T Consensus       117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR  176 (410)
T ss_pred             -----HHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence                 35778999999999999988887777621           1345678899999999999999999998875

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.30  E-value=1.4e-05  Score=62.13  Aligned_cols=104  Identities=24%  Similarity=0.197  Sum_probs=95.1

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291           97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL  176 (513)
Q Consensus        97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  176 (513)
                      ...+.+.++....-|.|.+ .+|.+...+.+..+++.++..+..++..+++.++..|+|+|.+..+.+.+.+.++++.++
T Consensus        27 ~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii  105 (173)
T KOG4646|consen   27 TTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLII  105 (173)
T ss_pred             HhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEE
Confidence            3467788888888888987 668888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          177 KLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       177 ~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      ..++++...+...++.++..|+...
T Consensus       106 ~~lssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen  106 FVLSSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             eecCCChHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999744

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.00011  Score=66.18  Aligned_cols=288  Identities=16%  Similarity=0.177  Sum_probs=189.9

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHH--HHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT--LILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~--Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      |.++.++.++...+.++-..|...|..++. .+..-..+........  +.++-...+.-+|......+..+..-++...
T Consensus       128 eilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa  206 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA  206 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence            566778888888889999999999999998 6777777777665544  3344445566778888888999988888887


Q ss_pred             HHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHH----
Q 010291           81 KEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFAL----  153 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L----  153 (513)
                      ......|.+..|..-+.. .|.-++..+......++.. ...++.+.+.|.++.+.+++...  +|.-.-.+....    
T Consensus       207 neckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff  285 (524)
T KOG4413|consen  207 NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF  285 (524)
T ss_pred             hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence            778888988888877776 6777788888888888743 45577788899999999999753  443333233333    


Q ss_pred             HHHhhccccchhhHh--cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHH
Q 010291          154 GRLAQDMHNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA  231 (513)
Q Consensus       154 ~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~  231 (513)
                      ++.+..+-.-+.+.+  --+++..++++...|+..+..|+.+++.+..+.+....+...|- |                 
T Consensus       286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp-p-----------------  347 (524)
T KOG4413|consen  286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP-P-----------------  347 (524)
T ss_pred             cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC-h-----------------
Confidence            333222211122222  12355567788888999999999999999988777655554441 0                 


Q ss_pred             HHHHHHHHHhhhhhHHHHHH-HHHHhhcchhhhHHHHHhhccCC---CCcce-----------ee-------ecCCchHH
Q 010291          232 KTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSP---DDQRT-----------IF-------IDGGGLEL  289 (513)
Q Consensus       232 ~~~~~~~~~~~~~~l~~Lv~-lL~~~~~~v~~~a~~aL~~l~~~---~~~~~-----------~l-------~~~~~i~~  289 (513)
                                   ...+++. ....+...-++.+..+|.+++..   +..+.           .+       -+..-...
T Consensus       348 -------------aaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleL  414 (524)
T KOG4413|consen  348 -------------AAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLEL  414 (524)
T ss_pred             -------------HHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHH
Confidence                         1122222 22222333456666666666542   11110           00       01122445


Q ss_pred             HHhhhcCCCcchhhhHHHHHHHhhhccccccccC
Q 010291          290 LLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD  323 (513)
Q Consensus       290 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~  323 (513)
                      +..+++.+.|+++..+...+..++..+|....+.
T Consensus       415 FlgilqQpfpEihcAalktfTAiaaqPWalkeif  448 (524)
T KOG4413|consen  415 FLGILQQPFPEIHCAALKTFTAIAAQPWALKEIF  448 (524)
T ss_pred             HHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHh
Confidence            6667777899999999999999988877665443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.25  E-value=0.00019  Score=71.01  Aligned_cols=285  Identities=20%  Similarity=0.177  Sum_probs=171.5

Q ss_pred             HHHHHHhhccCchhHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291           24 AGALRTLAFKNDENKNQIVECNALPTLILML----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        24 ~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   93 (513)
                      +.+|+-+++ ++.+...+....++..|..+-          ...+..+...|++||+|+...++..|+.+.+.|+...++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            455666666 566666666666677766655          246789999999999999999999999999999999999


Q ss_pred             HhhcCC-----ChHHHHHHHHHHHHhhcCCchhhHHHHhc-CChHHHHHHhC----C-------------CCHHHHHHHH
Q 010291           94 GLLSSC-----CSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQ----S-------------PDVQLREMSA  150 (513)
Q Consensus        94 ~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~----~-------------~~~~~~~~a~  150 (513)
                      ..+...     +.++.....+.|.-++...+..+..+++. +++..+...+.    .             .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999876     78888889999988887777777777654 67777766652    0             1345667888


Q ss_pred             HHHHHHhhccccchhhHhcCChHHHHHHhcC---------CCHHHHHHHHHHHHhcccCcchHHHHHhhcC-cccccchh
Q 010291          151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNVADFIRVGG-VQKLQDGE  220 (513)
Q Consensus       151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-i~~L~~~~  220 (513)
                      .++.|+.........-...+.++.++.++.+         +......+++.+|.|+--.  ....++.... -..+.   
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~---  235 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLF---  235 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCccccc---
Confidence            9999998665554331223444444444321         1245677888888888321  1111111000 00000   


Q ss_pred             hhhhhhHHHHHHHHHHHHHH----h---hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCc-hHHH
Q 010291          221 FIVQATKDCVAKTLKRLEEK----I---HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGG-LELL  290 (513)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~-i~~L  290 (513)
                       .......++..-++.++..    .   -...+.+++.+|..-.... ..+-..+....-.+.  .+..+-+.+. -..|
T Consensus       236 -~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL  313 (446)
T PF10165_consen  236 -PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRL  313 (446)
T ss_pred             -CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence             0000011111111111111    1   1245666667666521111 222223332222222  2223323333 4789


Q ss_pred             HhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          291 LGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       291 ~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ++++.+..+.++..++..|..++...
T Consensus       314 lrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  314 LRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            99999988999999999999998653

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.19  E-value=2.9e-06  Score=53.01  Aligned_cols=41  Identities=39%  Similarity=0.621  Sum_probs=38.3

Q ss_pred             CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291           34 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus        34 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~   74 (513)
                      +++++..+++.|+++.|+++|+++++++++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=5.3e-05  Score=76.03  Aligned_cols=291  Identities=16%  Similarity=0.171  Sum_probs=178.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ..++.+.++++++.+|..|+.+..++-.   .......+.|.++.|-.++.++++.|...|+.+|..+...+++.-....
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l  199 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL  199 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence            4677888889999999999888888765   4556677889999999999999999999999999999876543111111


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      ....+..++..++..+..-+.....++.+-.-.++...     ...++.+...+.+.++.+...+...+.++........
T Consensus       200 ~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea-----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~  274 (734)
T KOG1061|consen  200 NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREA-----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN  274 (734)
T ss_pred             cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhH-----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence            11233444444444444444444444444432222111     1256678888888888888888888888876554433


Q ss_pred             hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCccccc---chhhhhhhhHHHHHHHHHHHHHHh
Q 010291          165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ---DGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                      .......-++++.++.... .++..++.-+.-+-.....   +.....-.-+.   +..+.-.....|       +..+.
T Consensus       275 ~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~kynDPiYvK~eKlei-------l~~la  343 (734)
T KOG1061|consen  275 ELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCKYNDPIYVKLEKLEI-------LIELA  343 (734)
T ss_pred             HHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeeecCCchhhHHHHHHH-------HHHHh
Confidence            3333455566777777665 6655555544333221111   11111000000   000000001111       11222


Q ss_pred             hhh----hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          242 HGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       242 ~~~----~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      +..    ++..+...-..-|.+.-..+.+++++++..-+..     .+.++.|+.++.....-+..++...+..+.++-+
T Consensus       344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP  418 (734)
T ss_pred             hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC
Confidence            222    3444444444467777889999999998754332     6789999999998777888888999999888755


Q ss_pred             cc
Q 010291          318 TL  319 (513)
Q Consensus       318 ~~  319 (513)
                      +.
T Consensus       419 ~~  420 (734)
T KOG1061|consen  419 NK  420 (734)
T ss_pred             Cc
Confidence            43

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.00024  Score=63.63  Aligned_cols=205  Identities=17%  Similarity=0.155  Sum_probs=134.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .++.+.++++...+  -..|+.+|.|++. ++..+..+... .++.++..+.++...+-...+..|.|++++........
T Consensus        45 ~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll  120 (353)
T KOG2973|consen   45 LLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL  120 (353)
T ss_pred             hHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence            35667777776665  5678899999998 67888888777 77888888887767788888999999999866654443


Q ss_pred             Hh------CCChHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHHhcCCh--HHHHHHhCCCCHHHH-HHHHHH
Q 010291           84 LA------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQSPDVQLR-EMSAFA  152 (513)
Q Consensus        84 ~~------~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~~l~~~~~~~~-~~a~~~  152 (513)
                      ..      .|.+.....+.+.+..  .--.+.+.++.|+++. +..|..+.+...+  +.+.. +.+.+..+| ...+.+
T Consensus       121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvagt  198 (353)
T KOG2973|consen  121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGT  198 (353)
T ss_pred             HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHH
Confidence            32      2333333333333221  2335567788999744 5556666654432  22333 334555555 678899


Q ss_pred             HHHHhhccccchhhHhcC--ChHH-HH--------------------HHhc-----CCCHHHHHHHHHHHHhcccCcchH
Q 010291          153 LGRLAQDMHNQAGIAHNG--GLVP-LL--------------------KLLD-----SKNGSLQHNAAFALYGLADNEDNV  204 (513)
Q Consensus       153 L~~l~~~~~~~~~~~~~~--~i~~-L~--------------------~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~  204 (513)
                      |.|+|.+...+..+.+.+  .++. |.                    +++.     .+++.++...+.+|..||.....+
T Consensus       199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR  278 (353)
T KOG2973|consen  199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR  278 (353)
T ss_pred             HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence            999998888777666522  1221 11                    2221     346788889999999999888887


Q ss_pred             HHHHhhcCcc
Q 010291          205 ADFIRVGGVQ  214 (513)
Q Consensus       205 ~~~~~~g~i~  214 (513)
                      ..+...|+-+
T Consensus       279 e~lR~kgvYp  288 (353)
T KOG2973|consen  279 EVLRSKGVYP  288 (353)
T ss_pred             HHHHhcCchH
Confidence            7777666443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.14  E-value=0.0007  Score=65.05  Aligned_cols=251  Identities=20%  Similarity=0.125  Sum_probs=169.2

Q ss_pred             HHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHH
Q 010291           27 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ  104 (513)
Q Consensus        27 L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~  104 (513)
                      |..+.+.++..+..+.-....+.+..++-+++.++|..+.++++.+..+ +..-+.+.+.++--.++.-|..+  ...-|
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence            3344444555555554444555555555555699999999999999987 45557777778777777777654  34456


Q ss_pred             HHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCH
Q 010291          105 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG  184 (513)
Q Consensus       105 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~  184 (513)
                      ++|...++.+....... . -...|++..++.+..+++...+..|..+|+.++..+  -..+..+||+..|++.+.++..
T Consensus        86 ~QALkliR~~l~~~~~~-~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKKGP-K-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcCCc-c-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence            78888888887552221 1 235578899999999999999999999999998633  3456788999999999888776


Q ss_pred             HHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------hh
Q 010291          185 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------AE  257 (513)
Q Consensus       185 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-------~~  257 (513)
                      ++....+.++..+-.++..+..+...--                                 ++.++.-..+       ++
T Consensus       162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~d---------------------------------L~~l~apftd~~~~~~~~~  208 (371)
T PF14664_consen  162 SISESLLDTLLYLLDSPRTRKYLRPGFD---------------------------------LESLLAPFTDFHYRKIKDD  208 (371)
T ss_pred             hHHHHHHHHHHHHhCCcchhhhhcCCcc---------------------------------HHHHHHhhhhhhccccccc
Confidence            7888888999999888776554432110                                 1111111111       11


Q ss_pred             c--chhhhHHHHHhhccCCCCcceeeec--CCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          258 K--GVQRRVALALAHLCSPDDQRTIFID--GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       258 ~--~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .  +--..+..++..+-++=++--.+..  ..++..|+..+..+++++|......+..+..-
T Consensus       209 ~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri  270 (371)
T PF14664_consen  209 RELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI  270 (371)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence            1  2233444555555443332222222  25899999999999999999999999888763

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.14  E-value=2.5e-05  Score=77.51  Aligned_cols=257  Identities=15%  Similarity=0.110  Sum_probs=167.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291           48 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  125 (513)
Q Consensus        48 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  125 (513)
                      ..++..|++..+.+|+.|+..++.++.--..+  -+.+...|+  .|.+.|...++++.-..+.++..++..-.-.+..-
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            34445667888999999999999987432221  122333343  36778888889888777776666653211100100


Q ss_pred             HhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc----chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          126 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       126 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      =-.+++|.|..+|++.+.+++++++..++.++...+.    |+.+   ...-.|+++|.+.+..++++|...++.++.--
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            1247899999999999999999999999999976654    3333   23445888999889999999999999998622


Q ss_pred             chHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCc
Q 010291          202 DNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQ  277 (513)
Q Consensus       202 ~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~  277 (513)
                      ..+..      +..|.+ +.....-...|..-++....+. .--.++|.|+.=-+.++..||...+.+++.+-..  .-.
T Consensus       957 GPqdV------LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen  957 GPQDV------LATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred             CHHHH------HHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence            22111      112222 1222222234444343333221 2234677777766778999999999999988642  233


Q ss_pred             ceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          278 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       278 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      +..+.  -..|.|...|.+.++.-|..|+.++.+++-+..
T Consensus      1031 kdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1031 KDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             hhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence            44432  256788888888888889999999999886643

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00047  Score=69.51  Aligned_cols=257  Identities=17%  Similarity=0.220  Sum_probs=156.0

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ..|.+.++|++.++.+|..|+-+...+-+..|+..+.+     ++..-.+|.+.+..|...++..+..+|..+++.-..+
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f  217 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF  217 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence            34677788999999999999999999998777766654     5677788888888888888888999988777655444


Q ss_pred             HhCCChHHHHHhhcC---------------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH-------------
Q 010291           84 LAAGALQPVIGLLSS---------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-------------  135 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-------------  135 (513)
                      .+  .++.++..|+.               ++|-++...++.|+-+..+++...+.+.+  ++..+.             
T Consensus       218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnAI  293 (866)
T KOG1062|consen  218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNAI  293 (866)
T ss_pred             HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhHH
Confidence            44  55556555541               46778888888888888777765554432  111111             


Q ss_pred             ------HHhC-CCCHHHHHHHHHHHHHHhhccccchhhHh-----------cCChH----HHHHHhcCCCHHHHHHHHHH
Q 010291          136 ------EMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH-----------NGGLV----PLLKLLDSKNGSLQHNAAFA  193 (513)
Q Consensus       136 ------~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-----------~~~i~----~L~~ll~~~~~~~~~~a~~~  193 (513)
                            .++. .++..++..|+.+|+....+.++..+.+.           ..+++    .++++|+++|..+++.|+..
T Consensus       294 LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralEL  373 (866)
T KOG1062|consen  294 LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALEL  373 (866)
T ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence                  1111 13445666666666666554443221111           01111    24555555566666666555


Q ss_pred             HHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          194 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       194 L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                      +..|.... |..                                      ..+..|+.+|.+.+++.+...+.-+..++.
T Consensus       374 s~~lvn~~-Nv~--------------------------------------~mv~eLl~fL~~~d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  374 SYALVNES-NVR--------------------------------------VMVKELLEFLESSDEDFKADIASKIAELAE  414 (866)
T ss_pred             HHHHhccc-cHH--------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            55554322 222                                      245678888888888888888888877764


Q ss_pred             C--CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          274 P--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       274 ~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      .  |+.+ .     .|+.+.+.+...-.-++..+...+..+..
T Consensus       415 kfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  415 KFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             hcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence            2  2221 1     23444444444334444444444444433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.13  E-value=0.00021  Score=69.11  Aligned_cols=296  Identities=11%  Similarity=0.028  Sum_probs=180.5

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHH----HHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL----ILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L----v~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .+.|+++.|+....|+..++.++.-.       .-.+..|-|    +....+ +...++..++.++++.|..... ...+
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li  171 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLI  171 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHH
Confidence            45677788888888888888887621       112334444    443343 4567888999999999975333 2223


Q ss_pred             HhCC-ChHHHHHh-hcC-CChHHHHHHHHHHHHhh-c-----CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           84 LAAG-ALQPVIGL-LSS-CCSESQREAALLLGQFA-A-----TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        84 ~~~g-~i~~L~~l-l~~-~~~~~~~~a~~~L~~l~-~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      ...+ ++..++.- ++. .+..+|..++.+|.+-+ .     ..++.+..     ++...+..-+.++.+++..+..+|.
T Consensus       172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~  246 (858)
T COG5215         172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLN  246 (858)
T ss_pred             HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHH
Confidence            2232 33444443 333 35678888888888732 1     11222222     3556677778899999999999999


Q ss_pred             HHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHh----------------hcCcccc
Q 010291          155 RLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIR----------------VGGVQKL  216 (513)
Q Consensus       155 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~----------------~g~i~~L  216 (513)
                      .+..-... -+...+........+.+.+.++++...+......+|..+- ...+...                ..++|.|
T Consensus       247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l  326 (858)
T COG5215         247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL  326 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence            88743222 2223333333335566788899999999988888876321 1111111                1233333


Q ss_pred             cchhhh--------hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCC-cceeeec
Q 010291          217 QDGEFI--------VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDD-QRTIFID  283 (513)
Q Consensus       217 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~-~~~~l~~  283 (513)
                      +++...        .......+..++..+..+....++.+.+.+...    +++.-++.|+.+++.+-.++. .+..-+-
T Consensus       327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V  406 (858)
T COG5215         327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV  406 (858)
T ss_pred             HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence            332211        011112222344555555555666666666655    567778999999999987765 2222233


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ...+|.+...+.++.--++..++|+++.++.+..
T Consensus       407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence            5678999999998888889999999999987643

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.11  E-value=6.3e-06  Score=51.45  Aligned_cols=40  Identities=43%  Similarity=0.612  Sum_probs=37.6

Q ss_pred             ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291           76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  115 (513)
Q Consensus        76 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  115 (513)
                      ++++++.+++.|+++.|+.+|.+.+.++++.|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3677899999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.10  E-value=0.00033  Score=70.96  Aligned_cols=239  Identities=15%  Similarity=0.100  Sum_probs=160.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhCCChHHHHHhhcC-------CChHHHHHHHHHHHHhh
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFA  115 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~  115 (513)
                      .++..+.+|+..+.+-|-.++-.+.++..+.+..   ++.+.+.=+.+.+-++|.+       +....+.-|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3667788999888777888888999998766533   3457777778999999987       23466777888999998


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291          116 ATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL  194 (513)
Q Consensus       116 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  194 (513)
                      . +|+....----+.+|.|+.++.+.+. .+...|..+|..++..++++..+.+.|+++.|.+.+.+ .+...+.|+.++
T Consensus        86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            6 34432211112479999999988766 99999999999999999999999999999999999887 556678888888


Q ss_pred             HhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC
Q 010291          195 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  274 (513)
Q Consensus       195 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  274 (513)
                      .+++...... ...+..                       .     .-..+++.+-..........+..++..|..+-..
T Consensus       164 ~~Lls~~~~~-~~~~~~-----------------------~-----~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~  214 (543)
T PF05536_consen  164 LNLLSRLGQK-SWAEDS-----------------------Q-----LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR  214 (543)
T ss_pred             HHHHHhcchh-hhhhhH-----------------------H-----HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence            8887633211 000000                       0     0012334444555555556677788888887554


Q ss_pred             CCc--ceeeecCCch----HHHHhhhcC-CCcchhhhHHHHHHHhhhc
Q 010291          275 DDQ--RTIFIDGGGL----ELLLGLLGS-TNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       275 ~~~--~~~l~~~~~i----~~L~~ll~~-~~~~v~~~a~~~L~~l~~~  315 (513)
                      .+.  .......+..    .-+..++++ ..+.-|..+..+...+...
T Consensus       215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            321  2222333343    445566666 3445555665555555544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.10  E-value=0.00033  Score=67.47  Aligned_cols=155  Identities=32%  Similarity=0.424  Sum_probs=118.7

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .++.+++.+.++++.++..|...++.+..           ...++.+..++.+.++.+|..|+.+|+.+-.  +.     
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~-----  105 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--PE-----  105 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh-----
Confidence            46778888888889999999988776654           2468999999999999999999998888742  22     


Q ss_pred             HhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH------------HHHHHHH
Q 010291           84 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------------QLREMSA  150 (513)
Q Consensus        84 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~------------~~~~~a~  150 (513)
                          .++.++.++. +.+..++..++++|..+-..           ..+..++..++++..            .++..+.
T Consensus       106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         106 ----AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence                5788899888 58899999999999999522           236778888877652            2344444


Q ss_pred             HHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      ..|..+          .+...++.+...+.+.+..++..+..+|..+....
T Consensus       171 ~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         171 EALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            444443          23345778899999999999999999999887654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00025  Score=71.00  Aligned_cols=287  Identities=21%  Similarity=0.220  Sum_probs=168.8

Q ss_pred             CCChhHHHHhhcc-------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291            2 EGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~   74 (513)
                      .+.+|.|+++|..       +++..-..|..+|.-++..   ....|+. -+++.+-+-+++++..-|+.|+.+++.+-.
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE  393 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence            3578889998843       2345666777777766652   1112222 233333345557888999999999999998


Q ss_pred             CChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH-HHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291           75 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPLIEMLQSPDVQLREMSAFAL  153 (513)
Q Consensus        75 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~~L  153 (513)
                      +.+..+..-...++++.++.++.++.-.++..++|+|+.++...++.... ....+.++.++.-|. +.|.+..+++|++
T Consensus       394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf  472 (859)
T KOG1241|consen  394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAF  472 (859)
T ss_pred             CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHH
Confidence            87777777777899999999999888889999999999999776654321 122333444444443 4678999999999


Q ss_pred             HHHhhcccc--ch----hhHh---cCChHHHHHHhcCC---CHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchh
Q 010291          154 GRLAQDMHN--QA----GIAH---NGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGE  220 (513)
Q Consensus       154 ~~l~~~~~~--~~----~~~~---~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~  220 (513)
                      .+|+.....  ..    ....   ...+..|++.....   ....+..|-.+|..+..+. +....++. +         
T Consensus       473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~---------  542 (859)
T KOG1241|consen  473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-K---------  542 (859)
T ss_pred             HHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-H---------
Confidence            999943211  11    1221   11233333333332   3567888888999887633 33222211 0         


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CC
Q 010291          221 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TN  298 (513)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~  298 (513)
                              ...-...++....+.    ..+.+-. ..-.++|...|.+|..+.+.-..+..-.....+..+++++.+ .+
T Consensus       543 --------~~l~il~kl~q~i~~----~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s  610 (859)
T KOG1241|consen  543 --------LTLVILEKLDQTISS----QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRS  610 (859)
T ss_pred             --------HHHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCcc
Confidence                    000111112111110    1111111 122456677777777775432212222233456778888887 55


Q ss_pred             cchhhhHHHHHHHhhhc
Q 010291          299 PKQQLDGAVALFKLANK  315 (513)
Q Consensus       299 ~~v~~~a~~~L~~l~~~  315 (513)
                      .-+.+.|..++..++.+
T Consensus       611 ~~v~e~a~laV~tl~~~  627 (859)
T KOG1241|consen  611 AVVHEEAFLAVSTLAES  627 (859)
T ss_pred             ccchHHHHHHHHHHHHH
Confidence            56677777776666543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00061  Score=67.86  Aligned_cols=192  Identities=20%  Similarity=0.288  Sum_probs=108.2

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH----
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK----   81 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----   81 (513)
                      +.++.+|++.-|-+|..|...+..+.-.-|+   .+..  .+|.|++-|.++++.|+..|+..++.|+..+|.+.-    
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP  221 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP  221 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH
Confidence            4455666666666666666666655542222   2222  256666666666666666666666666665554321    


Q ss_pred             ----HHHh-------------------------CCChHHHHHhhcCCC-hHHHHHHHHHHH--HhhcCCchhhHHHHhcC
Q 010291           82 ----EVLA-------------------------AGALQPVIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQRG  129 (513)
Q Consensus        82 ----~~~~-------------------------~g~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~~~~~~~~~~~~  129 (513)
                          .+..                         .-.+++|.+++++.. ..+.+.+..++.  ++..+.+.+...+  .-
T Consensus       222 ~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qL  299 (877)
T KOG1059|consen  222 LFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QL  299 (877)
T ss_pred             HHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HH
Confidence                1111                         112444555554422 344444444432  2333322221111  12


Q ss_pred             ChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291          130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  209 (513)
Q Consensus       130 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  209 (513)
                      ++..|--++.+.|+.+++.++-+++.+...++.-   + ..--+.++++|.+.|+.++..|+..+..+.. .+|..++++
T Consensus       300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk  374 (877)
T KOG1059|consen  300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---V-QAHKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK  374 (877)
T ss_pred             HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---H-HHhHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence            4556666777888889988888888887533221   1 1223467899999999999999999988874 445555543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.08  E-value=2.3e-05  Score=76.11  Aligned_cols=262  Identities=15%  Similarity=0.127  Sum_probs=167.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      ++..++.+|++..+++|..|+...+.|+.--..+  -+.+...|.  .|.+-+...++++.-..+.+++.+.+...-...
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            3556677888999999999999888886321111  123333333  356667778888887777777776532111000


Q ss_pred             HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc
Q 010291          124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  202 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  202 (513)
                      +-=-.|++|.|..+|++.+.+++.+....++.+|...+...-..+ ....-.|+.+|.+-+.+++++|...++.+++--.
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG  762 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG  762 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence            011247899999999999999999999999999977665221111 1233458888999999999999999999886222


Q ss_pred             hHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcc
Q 010291          203 NVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR  278 (513)
Q Consensus       203 ~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~  278 (513)
                      .+..+      ..|.+ +.....-...|.+-++....+. .--.++|.|+.=-.+++..||...+.+++.+-..  ...+
T Consensus       763 PqdvL------~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~  836 (975)
T COG5181         763 PQDVL------DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL  836 (975)
T ss_pred             HHHHH------HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence            21111      11222 1122222334444333333221 2234677776666668889999999999887542  2223


Q ss_pred             eeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          279 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       279 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ..+.  ...|.|...+.+.++.-|..|...+.+++-++.
T Consensus       837 dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         837 DYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            3321  245777788888888889999999999887644

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.05  E-value=0.00017  Score=71.44  Aligned_cols=246  Identities=19%  Similarity=0.151  Sum_probs=171.0

Q ss_pred             cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHhC-C
Q 010291           14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-G   87 (513)
Q Consensus        14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g   87 (513)
                      .+++.+..+|+++|.|+...++..|..+.+.|..+.++..|+..     +.++.-...++|.-++......+..+++. +
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999954     78999999999999998878887777655 7


Q ss_pred             ChHHHHHhhcC-----------------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-------C--C
Q 010291           88 ALQPVIGLLSS-----------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-------S--P  141 (513)
Q Consensus        88 ~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-------~--~  141 (513)
                      ++..+...+..                 .+......++.++.|++...+.... -...+.++.++.++.       .  +
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~  201 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP  201 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence            88888776641                 1334567788899999865554332 011223333333321       1  2


Q ss_pred             CHHHHHHHHHHHHHHhhccccc--------hh----hHhcCChHHHHHHhcC----C----CHHHHHHHHHHHHhcccCc
Q 010291          142 DVQLREMSAFALGRLAQDMHNQ--------AG----IAHNGGLVPLLKLLDS----K----NGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       142 ~~~~~~~a~~~L~~l~~~~~~~--------~~----~~~~~~i~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~  201 (513)
                      ......+++.+|.|+-......        ..    ......+..|+.+|..    .    -.......+.+|.+++...
T Consensus       202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~  281 (446)
T PF10165_consen  202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA  281 (446)
T ss_pred             chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence            3456788888888884211111        00    1112234556666531    1    1356678888999999877


Q ss_pred             chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC
Q 010291          202 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  276 (513)
Q Consensus       202 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (513)
                      ...+..++...+|++.+......                ....+-..|+.++.++.+.++..++..|..||..+.
T Consensus       282 ~~~Rk~lr~~lLP~~~Dr~~~~e----------------~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  282 REVRKYLRARLLPPDKDRKKPPE----------------KGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HHHHHHHHHHhCCChhhcccCCC----------------CCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            88888888888888744222111                123466789999999889999999999999986544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=0.00012  Score=71.95  Aligned_cols=300  Identities=16%  Similarity=0.102  Sum_probs=161.2

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhHHHHHHhC
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      +.++++......+..|...+..+..+  ..-..+.+.+++..+-..+++.++..+.. +..+.......-.    ...+.
T Consensus       139 l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EP  212 (569)
T KOG1242|consen  139 LLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEP  212 (569)
T ss_pred             HHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence            33444444444445555555554432  22233334455555555555443333332 2222222211100    11122


Q ss_pred             CChHHHH---HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           87 GALQPVI---GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        87 g~i~~L~---~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      +.++.+-   .-..+....+|..+..+...+.+.-+.....    -+++.++.-+.+..=..+..++..++.++...+.+
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q  288 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ  288 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence            3333333   3334556778877777766665433322111    12344443333333356678899999998887878


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh-hhHHHHHHH-HHHHHHHh
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKT-LKRLEEKI  241 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~-~~~~~~~~  241 (513)
                      -...-...++.+.+.|.+.+++++..+..++..++.--++-. +.  ..++.|++...... ....|...- ...+...+
T Consensus       289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V  365 (569)
T KOG1242|consen  289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDALADPSCYTPECLDSLGATTFVAEV  365 (569)
T ss_pred             HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence            778888999999999999999999999999999987333322 11  11222222111111 111221110 00111112


Q ss_pred             hhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCCcceeeec--CCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          242 HGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFID--GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +.-.+..++.+|+.    .+...+..++.++.|+|.--+....+..  ...+|-|-..+.+..|++|..++.+|+.+.+.
T Consensus       366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            33344455555544    6778889999999999975432222211  12345555555667899999999999888876


Q ss_pred             ccccc
Q 010291          316 ATTLS  320 (513)
Q Consensus       316 ~~~~~  320 (513)
                      ....+
T Consensus       446 ~g~~~  450 (569)
T KOG1242|consen  446 LGEVS  450 (569)
T ss_pred             HHhhc
Confidence            55444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.99  E-value=0.00074  Score=65.02  Aligned_cols=156  Identities=32%  Similarity=0.424  Sum_probs=121.9

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++.+..++.+.++.+|..|+.+|+.+-.           ...++.++.++. +++..+|..+.++|+.+-..       
T Consensus        75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------  136 (335)
T COG1413          75 AVPLLRELLSDEDPRVRDAAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-------  136 (335)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------
Confidence            57888999999999999999998887764           236889999999 68999999999999998532       


Q ss_pred             HHhCCChHHHHHhhcCCCh------------HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCS------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA  150 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~  150 (513)
                          ..+..++..+.+...            .++..+...|..+-  +         ...++.+...+.+.+..++..+.
T Consensus       137 ----~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--~---------~~~~~~l~~~l~~~~~~vr~~Aa  201 (335)
T COG1413         137 ----RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG--D---------PEAIPLLIELLEDEDADVRRAAA  201 (335)
T ss_pred             ----hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC--C---------hhhhHHHHHHHhCchHHHHHHHH
Confidence                136677777776541            45666666666663  1         23577889999999989999999


Q ss_pred             HHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      .+|..+....        ......+...+.+.+..++..++.+++.+-..
T Consensus       202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~  243 (335)
T COG1413         202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGDE  243 (335)
T ss_pred             HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence            9999987644        23456788899999999999999998876643

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.99  E-value=2.1e-05  Score=59.04  Aligned_cols=86  Identities=34%  Similarity=0.450  Sum_probs=70.0

Q ss_pred             hhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            5 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         5 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      |+.|++.| +++++.+|..|+++|+.+..  +         .+++.|+++++++++.+|..|+++|+.+..         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD---------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence            57899999 88899999999999996643  1         358999999999999999999999998831         


Q ss_pred             HhCCChHHHHHhhcCCC-hHHHHHHHHHHH
Q 010291           84 LAAGALQPVIGLLSSCC-SESQREAALLLG  112 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~  112 (513)
                        ..+++.|.+++.+++ ..++..|+.+|+
T Consensus        61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              237889999887754 556888888774

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.98  E-value=0.0002  Score=64.34  Aligned_cols=254  Identities=11%  Similarity=0.110  Sum_probs=156.6

Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChhHHHH-HHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHh-c
Q 010291           53 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ-R  128 (513)
Q Consensus        53 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~  128 (513)
                      +++.-++-.+..|+.+|.++... ++.|.. ..+...-..++.++.+  ++.+++++.+.+++-++.. +...+.+-. .
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~  234 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMD  234 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence            33334566788999999999987 444444 4455566677888776  4578999999999999744 444432221 3


Q ss_pred             CChHHHHHHhCCC-CHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcCC---CHHHHHHHHHHHHhcccCcc
Q 010291          129 GAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED  202 (513)
Q Consensus       129 ~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~  202 (513)
                      ..+..|+.+.++. ..++-+.++.++.|++...+.  -..+...|.+.+.++.|...   |.+++...-..=..|..+..
T Consensus       235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k  314 (432)
T COG5231         235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence            4577788888765 667889999999999873321  22344456677777777543   34443322221112221111


Q ss_pred             hHHH------HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc-hhhhHHHHHhhccC-C
Q 010291          203 NVAD------FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCS-P  274 (513)
Q Consensus       203 ~~~~------~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~-v~~~a~~aL~~l~~-~  274 (513)
                      ....      -+..|.+..    . ..+-....|..+++.+.+ .+-.++..|.++++..++. .-.-||.-++.+.+ .
T Consensus       315 ~l~~fD~Y~~ELdsg~l~w----S-p~H~~~dFWs~N~d~l~k-dny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~  388 (432)
T COG5231         315 KLCIFDNYLNELDSGRLEW----S-PYHHKKDFWSTNLDMLIK-DNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS  388 (432)
T ss_pred             hhhHHHHHHHHHhhCcccC----C-CcccccCchhhhHHHHhh-hhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence            1000      012221110    0 011112233333333321 2334788999999997665 44556666777765 5


Q ss_pred             CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          275 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       275 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      |+.+..+.+-|+-..+++++++++++++.+|..++..+..
T Consensus       389 PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         389 PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            7788888899999999999999999999999999877654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.00018  Score=69.44  Aligned_cols=266  Identities=15%  Similarity=0.112  Sum_probs=170.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIK   80 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~   80 (513)
                      .+|.|-+-+...++..|.--+..|..+-. .|+....-.-....+-|..+|.++++++|..+=.+|+++...   +|.. 
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-  245 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-  245 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-
Confidence            34444444445678888777777776654 233222111234567788899999999998777666665421   1211 


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHH-HHHHHH---HHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSA---FALGRL  156 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-~~~~a~---~~L~~l  156 (513)
                        +--...++.++.-+.++++.++..|...+..+..-.+. .....-+|++..++.++.+..+. .++.+.   ..+..+
T Consensus       246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l  322 (675)
T KOG0212|consen  246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL  322 (675)
T ss_pred             --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence              11234788889999999999999999999988754332 33445578888888888876553 333222   223344


Q ss_pred             hhccccchhhHhc-CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHH
Q 010291          157 AQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK  235 (513)
Q Consensus       157 ~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~  235 (513)
                      +........ ++- ..+..+.+.+.++..+.+..++.-+..+-....+...                             
T Consensus       323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-----------------------------  372 (675)
T KOG0212|consen  323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-----------------------------  372 (675)
T ss_pred             Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-----------------------------
Confidence            433333333 332 3456688888888888888888777666543332111                             


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc---CCCcchhhhHHHHHHHh
Q 010291          236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKL  312 (513)
Q Consensus       236 ~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l  312 (513)
                          +....+.+.|+.-|.+++.+|...++..++++|.++...      +..+.+..++.   ....-+...+.-.+.++
T Consensus       373 ----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql  442 (675)
T KOG0212|consen  373 ----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL  442 (675)
T ss_pred             ----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence                124557888899999999999999999999999887655      33555555553   44444566676777776


Q ss_pred             hh
Q 010291          313 AN  314 (513)
Q Consensus       313 ~~  314 (513)
                      +.
T Consensus       443 C~  444 (675)
T KOG0212|consen  443 CL  444 (675)
T ss_pred             HH
Confidence            64

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.98  E-value=0.00016  Score=65.28  Aligned_cols=189  Identities=20%  Similarity=0.184  Sum_probs=118.9

Q ss_pred             hhHHHHhh----ccCCHHHHHHHHHHHHHhhccC--chhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 010291            5 IPPLVELL----EFTDTKVQRAAAGALRTLAFKN--DENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSS   76 (513)
Q Consensus         5 i~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~   76 (513)
                      +..+...|    .+.++..|..|+..|..+..++  ......+.+.  .++..+...+.+....+...|+.++..++..-
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34445555    5578999999999999999876  3333333321  45667778888778889999999999998543


Q ss_pred             hhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           77 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        77 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      ...-+.. -...++.|+..+.+....++..|..+|..++...+.....     ..+.+...+++.++.++..++..+..+
T Consensus        85 ~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~  158 (228)
T PF12348_consen   85 GSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAII  158 (228)
T ss_dssp             GGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             hHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            3322222 2346788899998888899999999999998665411111     155677788889999999999999998


Q ss_pred             hhccc-cchhhHh----cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          157 AQDMH-NQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       157 ~~~~~-~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ..... ....+..    ...++.+.+.+.+++++++..|-.+++.+..
T Consensus       159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            75544 2222222    2356668899999999999999999998865

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.97  E-value=0.00046  Score=66.25  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=128.4

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      .+..++-+++.+++..+.++++.+.. +++....+.+.++--.++..|..  .+..-|++|+..++.+..-....+  .+
T Consensus        29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~  105 (371)
T PF14664_consen   29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EI  105 (371)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cC
Confidence            33433444458999999999999987 67788888888866667777763  345678899999988875522211  12


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      -.|++..++.+.++.+...+..|..+|+.++..+|+   .+...|++..|++.+.++..++.+..+.++..+...+..|+
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence            446888999999999999999999999999977765   56788999999999998766788999999999998888887


Q ss_pred             hhHhcCChHHHHHHhc
Q 010291          165 GIAHNGGLVPLLKLLD  180 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~  180 (513)
                      .+...--+..++.-+.
T Consensus       183 yl~~~~dL~~l~apft  198 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFT  198 (371)
T ss_pred             hhcCCccHHHHHHhhh
Confidence            6655444555554444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.97  E-value=5e-05  Score=57.16  Aligned_cols=67  Identities=19%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      +...++.|++++..++.++..+++.|+++.+++...  ..+|-+++.|++++.+|+.+++++++.+.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            566789999999999999999999999999999877  5689999999999999999999998887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=7.7e-05  Score=74.90  Aligned_cols=184  Identities=15%  Similarity=0.086  Sum_probs=128.8

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ++..+.++..++..+-+.+.-.--.+.+.+.+.++...     +.+..++.=.+++++.+|..|++.++.+..+  ...+
T Consensus        48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e  120 (734)
T KOG1061|consen   48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE  120 (734)
T ss_pred             HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH
Confidence            34556666676666666666666677777766555332     3455666666688999999999988877643  2112


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                           .....+...+++.++.++..++....++-..+   .+.....|.++.|-+++.++++.+..+|..+|..+.....
T Consensus       121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence                 25678999999999999999999999996444   3456778999999999999999999999999999987665


Q ss_pred             cc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          162 NQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       162 ~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      +. ........+..++..+...+...+...+.++.+-...
T Consensus       193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~  232 (734)
T KOG1061|consen  193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPK  232 (734)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC
Confidence            41 1111222344455555555566666666666655443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.0014  Score=63.68  Aligned_cols=268  Identities=15%  Similarity=0.133  Sum_probs=152.6

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      |++.-..+..++++.+..++..+  ......+ ..+..|-.+|++.....|-.|+++|..++...|+.. .+    .=+-
T Consensus       273 ls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~v----cN~e  344 (898)
T COG5240         273 LSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SV----CNKE  344 (898)
T ss_pred             hcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-ee----cChh
Confidence            34444678889999888887643  1222222 246667777888889999999999999998766521 11    1123


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh------
Q 010291           92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG------  165 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~------  165 (513)
                      +-.++.+.+..+...|..+|..-  +.++..+.++.  .++.+++=++++   .+..+..+++.|+-..+.++.      
T Consensus       345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~s~l~FL  417 (898)
T COG5240         345 VESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKLSYLDFL  417 (898)
T ss_pred             HHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHHHHHHHH
Confidence            34455566666666666665543  44555554443  344444444333   344455555666544444322      


Q ss_pred             ---hHhcCC-------hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHH
Q 010291          166 ---IAHNGG-------LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK  235 (513)
Q Consensus       166 ---~~~~~~-------i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~  235 (513)
                         +.++|+       ++.+..++. .+|+.++.|+..|+.+..+.+.....++-  +..|-+.......          
T Consensus       418 ~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrI--L~iLG~EgP~a~~----------  484 (898)
T COG5240         418 GSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRI--LGILGREGPRAKT----------  484 (898)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHH--HHHhcccCCCCCC----------
Confidence               233444       333444443 34566666766666665544433222210  0000000000000          


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       236 ~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                            -...+.++..-+--.+.-+|.+|..+|..++.+.+..  +........|-+.+++.++++|..|..++.++-..
T Consensus       485 ------P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         485 ------PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             ------cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence                  1124444555444467788999999998887654432  23344567788999999999999999999888643

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=97.93  E-value=2.3e-05  Score=60.82  Aligned_cols=49  Identities=24%  Similarity=0.412  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHHH
Q 010291          448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH  496 (513)
Q Consensus       448 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~  496 (513)
                      |+.++.+|..|++.+|.+.|.+||.+||.++.++++|.+||.+.+..+.
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL   49 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEIL   49 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHH
Confidence            7899999999999999999999999999999999999999766544443

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.00011  Score=72.21  Aligned_cols=216  Identities=19%  Similarity=0.192  Sum_probs=137.7

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----hHHHH
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIKKE   82 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~   82 (513)
                      +..+..+.++.++..|+..|..+..+..- ..     -.....+.+|.+.+..||..|+.+++-...-.+     +.-+.
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-SK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccc-cH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44444555566666666666555542111 11     125567888999999999999777766553321     11111


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH---------------------------------------
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV---------------------------------------  123 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---------------------------------------  123 (513)
                      -..-.+...+...+++....+|..|+.+|+.+...+++...                                       
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad  356 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD  356 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence            11123566677777777777777777777666433332222                                       


Q ss_pred             -----------HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHH
Q 010291          124 -----------HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF  192 (513)
Q Consensus       124 -----------~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  192 (513)
                                 .++.+|..-.++.-+.+.-.+|++.|+..++.|+.+.+.-.    ...++-|+.++.+....++..|+.
T Consensus       357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~  432 (823)
T KOG2259|consen  357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIF  432 (823)
T ss_pred             CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHH
Confidence                       23344555566666666667899999999999986544321    135778899999888899999999


Q ss_pred             HHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhc
Q 010291          193 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL  271 (513)
Q Consensus       193 ~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l  271 (513)
                      +|..++.+-.                                      ++..-++.++..|.+.+.++|++.-..|.+.
T Consensus       433 aL~~Is~~l~--------------------------------------i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  433 ALTMISVHLA--------------------------------------IREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHhe--------------------------------------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9888876522                                      1334567778888888888888877777655

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00015  Score=69.65  Aligned_cols=192  Identities=12%  Similarity=0.068  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC
Q 010291           61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS  140 (513)
Q Consensus        61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~  140 (513)
                      -...++.+|-.++..-...|.-+.+..+.+.|+++|.+++..+..-+...++|+.......+..+.+.|++..+++++.+
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            34445566777776655667777888899999999999888888888889999987778888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccc
Q 010291          141 PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD  218 (513)
Q Consensus       141 ~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~  218 (513)
                      .|..++.+..|.++.+..+.+.  +-++...-++..++.+..+++..+++..+..+.|+..+.....+.     ...+..
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEks-----kdv~~K  559 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKS-----KDVFIK  559 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccccccc-----ceeEEe
Confidence            9999999999999999977655  345666788889999999999999999999999997643221111     111111


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc
Q 010291          219 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ  277 (513)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~  277 (513)
                      ..                    -..-....|+.-++..+|-.-...+..|.+++..++.
T Consensus       560 ~~--------------------p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~  598 (743)
T COG5369         560 AT--------------------PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDT  598 (743)
T ss_pred             cC--------------------hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence            00                    0112456677778887776667778888888765543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.0014  Score=61.75  Aligned_cols=211  Identities=18%  Similarity=0.223  Sum_probs=157.3

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhcc-----Cc----hhHHHHHhcCCHHHHHHhhcCCC------HHHHHHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----ND----ENKNQIVECNALPTLILMLRSED------SAIHYEAVG   67 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-----~~----~~~~~i~~~g~i~~Lv~lL~~~~------~~v~~~a~~   67 (513)
                      ++++.|+++|.+.|.++-...+..+..++..     +.    .....+++.++++.|++.++.-+      .+-...++.
T Consensus       125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~  204 (536)
T KOG2734|consen  125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA  204 (536)
T ss_pred             ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence            6789999999999999999999999999752     11    33456778899999999887322      334556677


Q ss_pred             HHHHhhcCChhHHHHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-----C
Q 010291           68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-----S  140 (513)
Q Consensus        68 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~  140 (513)
                      .+-|+..-.+.....+++.|.+.-|+.-+..  .-..-+..|..+|.-+...+.+++..+-...++..+++-+.     +
T Consensus       205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d  284 (536)
T KOG2734|consen  205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD  284 (536)
T ss_pred             HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence            8888888778888888888877777664433  33455677788888887777777877878888888887774     1


Q ss_pred             C----CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc---chHHHHHhhcCc
Q 010291          141 P----DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE---DNVADFIRVGGV  213 (513)
Q Consensus       141 ~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~i  213 (513)
                      |    ..+..++...+|+.+...+.++..+....+++...-+++. ....+..++.+|-....++   +++..+++.+++
T Consensus       285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL  363 (536)
T KOG2734|consen  285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL  363 (536)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence            1    3467889999999999999999999999998776666665 4445667888888777644   456666655544


Q ss_pred             c
Q 010291          214 Q  214 (513)
Q Consensus       214 ~  214 (513)
                      .
T Consensus       364 r  364 (536)
T KOG2734|consen  364 R  364 (536)
T ss_pred             H
Confidence            3

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.88  E-value=0.00023  Score=72.79  Aligned_cols=271  Identities=16%  Similarity=0.089  Sum_probs=158.1

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      .|++.+.+++.+.|..|+.-|.+=.....-.-..=.+..++..++++|.+.+.+|+..|+.||+-++..-++.+-.    
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----
Confidence            5778888999999999988766544322111111123457889999999999999999999999998543332211    


Q ss_pred             CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC----C--CCHHHHHHHHHHHHHHhhcc
Q 010291           87 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----S--PDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        87 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----~--~~~~~~~~a~~~L~~l~~~~  160 (513)
                      ..+..|..-+-++....+.-+...|......-++.........+++.+...+.    .  +...++..++..++.+....
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            12333443333344444444333333332222222222223333444444443    2  34447777777776665332


Q ss_pred             ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                      ..--.-.+.+.+..++.-+.+....++..++.+|+.++..-... .                                  
T Consensus       165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-l----------------------------------  209 (1233)
T KOG1824|consen  165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-L----------------------------------  209 (1233)
T ss_pred             cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-H----------------------------------
Confidence            22111133445556667777778889999999999998633210 0                                  


Q ss_pred             hhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhh---cCCCcchhhhHHHHHHHhhhcc
Q 010291          241 IHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL---GSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                       -.+++..|+.-|.. ..+..-..-..+|+.+|+....|.--.-...+|.+.+..   ...++++|+.+..++..+....
T Consensus       210 -y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc  288 (1233)
T KOG1824|consen  210 -YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC  288 (1233)
T ss_pred             -HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence             01233344443433 223333344567777777655554334456788888888   5688899999999998887664


Q ss_pred             c
Q 010291          317 T  317 (513)
Q Consensus       317 ~  317 (513)
                      +
T Consensus       289 p  289 (1233)
T KOG1824|consen  289 P  289 (1233)
T ss_pred             h
Confidence            4

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.87  E-value=1.5e-05  Score=60.63  Aligned_cols=87  Identities=25%  Similarity=0.369  Sum_probs=66.3

Q ss_pred             EEEEecCeeehhhHHHHh-hcCHHHHHhccCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-CccccC-HHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR  421 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~ll~  421 (513)
                      |.+.|||+.|.+-+..|. ....+|..|+.++   ........+-++ =+++.|+.+|+|+.+ +.++.+ ......++.
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            578899999999999998 6677999999864   333445566664 599999999999999 666654 556889999


Q ss_pred             HHHHhcHHHH-HHHH
Q 010291          422 AADQYLLEGL-KRLC  435 (513)
Q Consensus       422 ~A~~~~~~~l-~~~c  435 (513)
                      -|++|+++.+ ++.|
T Consensus        80 Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   80 EAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHT-HHHHBHHC
T ss_pred             HHHHcCCCccccCCC
Confidence            9999999998 6655

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PF05536 Neurochondrin: Neurochondrin

Probab=97.83  E-value=0.0012  Score=66.85  Aligned_cols=195  Identities=18%  Similarity=0.188  Sum_probs=140.9

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhh
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLV   73 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~l~   73 (513)
                      .+...+++|++.+..-|..++-.+.++..+++..   ++.+.+.=+.+.+-++|++       +....+..|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3567788899888888999999999999865532   3456676667888899986       34577888999999999


Q ss_pred             cCChhHHHHHHhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHH
Q 010291           74 HSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA  152 (513)
Q Consensus        74 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~  152 (513)
                      .+ ++....---.+-||.|++.+...+. ++...|..+|..++ ..++.+..+.+.|.++.|++.+.+ .+...+.+..+
T Consensus        86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            85 5543222223579999999988776 99999999999999 667888999999999999999988 55678899999


Q ss_pred             HHHHhhccccchhhHh----cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          153 LGRLAQDMHNQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       153 L~~l~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      +.+++........-..    ...+..+...+.......+-..+..|..+-...
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            9998865432111111    122334555555444455556677777665433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.82  E-value=7.8e-05  Score=55.90  Aligned_cols=86  Identities=35%  Similarity=0.506  Sum_probs=70.0

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291           47 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  125 (513)
Q Consensus        47 i~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  125 (513)
                      |+.|++.| +++++.+|..++++|+++-.  +         .+++.|..+++++++.++..|+++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57899988 78999999999999996531  2         25889999999999999999999999983          


Q ss_pred             HhcCChHHHHHHhCCC-CHHHHHHHHHHHH
Q 010291          126 VQRGAVRPLIEMLQSP-DVQLREMSAFALG  154 (513)
Q Consensus       126 ~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~  154 (513)
                       ....++.|.+++.++ +..++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             124788999999876 5567888888874

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.81  E-value=1.5e-05  Score=75.15  Aligned_cols=131  Identities=21%  Similarity=0.190  Sum_probs=113.6

Q ss_pred             CeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHH---HHHHHHHHhcHHH
Q 010291          354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG  430 (513)
Q Consensus       354 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~ll~~A~~~~~~~  430 (513)
                      ++.+..|+.+++++|+.|+.|+..+..+.....+.+.+.+++.++.+..|.|...-....+...   ..+..+.+++.+.
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~  188 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH  188 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence            5669999999999999999999887666666677888999999999999999976665566555   8899999999999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH--HHHHhhCchhh
Q 010291          431 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH  484 (513)
Q Consensus       431 l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f  484 (513)
                      ++..|...+...++..++...+..+..++...+...+..++..  ++..+.++.++
T Consensus       189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~  244 (297)
T KOG1987|consen  189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE  244 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999986  66666654444

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.79  E-value=9.9e-05  Score=66.71  Aligned_cols=184  Identities=18%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             cCCChHHHHHHHHHHHHhhcCC--chhhHHHHh--cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCCh
Q 010291           97 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL  172 (513)
Q Consensus        97 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i  172 (513)
                      .+.+++.+..++.-|..+..++  ......+.+  ..++..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4578889999999999998665  222222221  256677888888878889999999999999654443222234567


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhh-HHHHHH
Q 010291          173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV-LNHLLY  251 (513)
Q Consensus       173 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~Lv~  251 (513)
                      +.|++.+.+++..++..|..+|..++.+-...                                      ..+ ++.+..
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--------------------------------------~~~~~~~l~~  138 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS--------------------------------------PKILLEILSQ  138 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------------------------------HHHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--------------------------------------HHHHHHHHHH
Confidence            88999999988899999999999988754311                                      112 455666


Q ss_pred             HHHHhhcchhhhHHHHHhhccCCCC-cceeeec----CCchHHHHhhhcCCCcchhhhHHHHHHHhhhcccc
Q 010291          252 LMRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT  318 (513)
Q Consensus       252 lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  318 (513)
                      .+.+.++.+|..++..+..+...-. ....+..    ...++.+...+.+.++++|..|-.++..+....+.
T Consensus       139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            7778899999999999988865432 2222222    23568888889999999999999999888766443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0014  Score=65.41  Aligned_cols=99  Identities=10%  Similarity=0.116  Sum_probs=77.7

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      +++++....--|+..|..+..  ++..+.+     .+-++.+|.+..+.+|..|+.++..+...-++.-..     .++.
T Consensus       118 l~S~n~ye~giAL~GLS~fvT--pdLARDL-----a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~Fpr  185 (877)
T KOG1059|consen  118 LNSSNVYEVGLALSGLSCIVT--PDLARDL-----ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPR  185 (877)
T ss_pred             hccCccchhhheecccccccC--chhhHHH-----HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHH
Confidence            456665555667777777764  4544433     566889999999999999999999998765554322     5899


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q 010291           92 VIGLLSSCCSESQREAALLLGQFAATDSDCK  122 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  122 (513)
                      |.+-|+++|+.++..|+.+++.|++.+|.+.
T Consensus       186 L~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  186 LVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             HHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            9999999999999999999999999888654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0035  Score=63.35  Aligned_cols=282  Identities=17%  Similarity=0.151  Sum_probs=153.3

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCC
Q 010291            9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA   88 (513)
Q Consensus         9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   88 (513)
                      -+-|+++|+-+|..|+++|..+--.       ++..-++-.+-++..+..+.||..|+.++-++-.-.++.+..+     
T Consensus       114 Qk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----  181 (968)
T KOG1060|consen  114 QKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----  181 (968)
T ss_pred             HhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----
Confidence            3445555555555555555544220       1110011122233345667777777777777755444444432     


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh---
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG---  165 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~---  165 (513)
                      +..+-.+|.+.++-|.-.|+.+...+|   |+..+.+.  +-...++.++.+-+.--+...+..|..-|+..-.+..   
T Consensus       182 ~e~I~~LLaD~splVvgsAv~AF~evC---PerldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~  256 (968)
T KOG1060|consen  182 EEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD  256 (968)
T ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence            445556666777777777777777776   44333222  4566677777666655565566666655543211110   


Q ss_pred             --hHhcC--------------------C----hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccch
Q 010291          166 --IAHNG--------------------G----LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG  219 (513)
Q Consensus       166 --~~~~~--------------------~----i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~  219 (513)
                        ..+.|                    -    ++..-.++.+.++.+...++.+.+.++...+.. .+     +.+|+++
T Consensus       257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~-~i-----~kaLvrL  330 (968)
T KOG1060|consen  257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT-KI-----AKALVRL  330 (968)
T ss_pred             cccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH-HH-----HHHHHHH
Confidence              00011                    1    222335667788899999999999998643221 11     1122221


Q ss_pred             hhhhhhhHHHH-------------------------------H--HHHHHHHHHhhhh----hHHHHHHHHHHhhcchhh
Q 010291          220 EFIVQATKDCV-------------------------------A--KTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQR  262 (513)
Q Consensus       220 ~~~~~~~~~~~-------------------------------~--~~~~~~~~~~~~~----~l~~Lv~lL~~~~~~v~~  262 (513)
                      ..+....+..+                               .  .-++.+..+.+..    +++.+-...++.+..+-.
T Consensus       331 Lrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa  410 (968)
T KOG1060|consen  331 LRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAA  410 (968)
T ss_pred             HhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHH
Confidence            11111111000                               0  0112223333333    455555566666666777


Q ss_pred             hHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          263 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       263 ~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .+..+|+.++....    -+...++.-|+.++.+.+..+..++...+..|....+
T Consensus       411 ~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  411 AAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             HHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            88888888865321    2334567889999999888898999999998887644

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0013  Score=65.39  Aligned_cols=102  Identities=15%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291           10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus        10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      .-|.+.|+....-|+.+++++..  .+.++.+...  |+   .+|.+  ....+++.|+-+|..|-+.+++..   -..+
T Consensus       118 nDL~srn~~fv~LAL~~I~niG~--re~~ea~~~D--I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~  187 (938)
T KOG1077|consen  118 NDLSSRNPTFVCLALHCIANIGS--REMAEAFADD--IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGE  187 (938)
T ss_pred             hhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhh--hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---Chhh
Confidence            34456677777888888888874  4555555332  33   55554  346788888888888888776541   1124


Q ss_pred             ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q 010291           88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  121 (513)
Q Consensus        88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  121 (513)
                      ....++.+|++.+..+...+...+..++...++.
T Consensus       188 W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~  221 (938)
T KOG1077|consen  188 WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES  221 (938)
T ss_pred             HHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence            6778889998888877777777777777665553

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.73  E-value=0.00018  Score=54.15  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHh
Q 010291           61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQ  127 (513)
Q Consensus        61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  127 (513)
                      ++...+++|++++..++..++.+.+.|+++.++....  ..+|-++++|.+++.||+.++++++..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4567889999999999999999999999999998754  467899999999999999999998876654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=97.68  E-value=0.00013  Score=52.64  Aligned_cols=74  Identities=26%  Similarity=0.453  Sum_probs=60.8

Q ss_pred             cCeeehhhHHHHhhcCHHHHHhccCC--CCCCCCCceecCCCCHHHHHHHHHHH-----hcCc------cccCHHHHHHH
Q 010291          353 EGRRFYAHRICLLASSDAFRAMFDGG--YREKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL  419 (513)
Q Consensus       353 ~~~~~~~h~~il~~~s~~f~~~~~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~~~~~~l  419 (513)
                      +|..|-..|. .+..|+-.|+||+|.  +.+...++|.+++++...++.+.+|+     |++.      .+++++-+.+|
T Consensus        25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL  103 (112)
T KOG3473|consen   25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL  103 (112)
T ss_pred             CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence            4566766666 466899999999975  56677789999999999999999998     4444      35889999999


Q ss_pred             HHHHHHhc
Q 010291          420 LRAADQYL  427 (513)
Q Consensus       420 l~~A~~~~  427 (513)
                      +.+|+++.
T Consensus       104 L~aAn~Le  111 (112)
T KOG3473|consen  104 LMAANYLE  111 (112)
T ss_pred             HHHhhhhc
Confidence            99999985

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0019  Score=65.11  Aligned_cols=230  Identities=16%  Similarity=0.127  Sum_probs=130.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  126 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  126 (513)
                      |..+-+-|+++|+.+|..|+++|..+=..       ++..=++-++-+...+..+-||..|+.++-.+-+-+++....+.
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~  182 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE  182 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence            34444556678888888888887666321       11111233344455667788999999999999887777666443


Q ss_pred             hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH-
Q 010291          127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA-  205 (513)
Q Consensus       127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-  205 (513)
                           ..+-.+|.+.++.|.-.|+.+...+|-   ++-.++. +....+-+++.+-+..-+..++..|...|++.-... 
T Consensus       183 -----e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~  253 (968)
T KOG1060|consen  183 -----EVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT  253 (968)
T ss_pred             -----HHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence                 355567777888888888888887763   3333333 445567777777676667777777776665221111 


Q ss_pred             ---HHH-hhcCcccccchh------hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC
Q 010291          206 ---DFI-RVGGVQKLQDGE------FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD  275 (513)
Q Consensus       206 ---~~~-~~g~i~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~  275 (513)
                         ... ..|.-..+....      ...+.+.               .-++...-.+|.+.++.|..+++.+..+++...
T Consensus       254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~---------------~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~  318 (968)
T KOG1060|consen  254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDL---------------KLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN  318 (968)
T ss_pred             ccccccccCcccccccccccccCCCcccCccH---------------HHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence               111 111000000000      0000000               012333445666777778888888888877543


Q ss_pred             CcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          276 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       276 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      +.      .+.++.|+++|.+ ++.+|.-....+..++.
T Consensus       319 ~~------~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  319 QV------TKIAKALVRLLRS-NREVQYVVLQNIATISI  350 (968)
T ss_pred             HH------HHHHHHHHHHHhc-CCcchhhhHHHHHHHHh
Confidence            21      2346777777765 34555555555555543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0059  Score=60.36  Aligned_cols=298  Identities=16%  Similarity=0.074  Sum_probs=179.0

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .++.+.+-+..+++++|+....+|..+.........    ....+.+.+++......-+..+.+.++.+..+...  ..+
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhh
Confidence            356677777888999999888888877652221111    12356677888877888899999999999876433  556


Q ss_pred             HhCCChHHHHHhhcCCChHHHHH-HHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQRE-AALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      .+.+.+..+...+.+.....++. +..+....+.. .+...-.+  ...+|.++..+.+..+.+|..+..+...+...-.
T Consensus       171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            67788899998888765544443 33333222211 11111111  1245556666667788888888777776653222


Q ss_pred             cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh-hhhhhHHHHHHHHHHHHHH
Q 010291          162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~~~~~~~~~~~~~~~~~  240 (513)
                      ...   -...++.++.-+..........++..++.++.....+........+|.+.+... +....+.-..+++.++..+
T Consensus       249 ~~a---VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv  325 (569)
T KOG1242|consen  249 AYA---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV  325 (569)
T ss_pred             cch---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            110   011233433333333677788899999999888877778888888888776444 3334455556677777766


Q ss_pred             hhhhhHHHHHHHHHH--hhcc-hhhhHHHHHhhccCCCCcceeeecCCc----hHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          241 IHGRVLNHLLYLMRV--AEKG-VQRRVALALAHLCSPDDQRTIFIDGGG----LELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~--~~~~-v~~~a~~aL~~l~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                      .+..-|..++..|-.  .++. --..+...|+.-.-     ...++.-.    +|.|.+-+...+...++.++..+.|++
T Consensus       326 idN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF-----V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  326 IDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF-----VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC  400 (569)
T ss_pred             hccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee-----eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence            666544444443333  2333 22233333332111     11222222    455666666678888899999999988


Q ss_pred             hccc
Q 010291          314 NKAT  317 (513)
Q Consensus       314 ~~~~  317 (513)
                      .-.+
T Consensus       401 ~Lve  404 (569)
T KOG1242|consen  401 KLVE  404 (569)
T ss_pred             Hhhc
Confidence            7643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.59  E-value=0.0013  Score=65.76  Aligned_cols=303  Identities=11%  Similarity=0.040  Sum_probs=168.5

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      +++-.++++.+.+.-.+.++..+|. ....-...+...+++.+...........-...-..|-..+   ....+.+....
T Consensus       641 l~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt---v~ia~KvG~~~  716 (1172)
T KOG0213|consen  641 LIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT---VEIAAKVGSDP  716 (1172)
T ss_pred             HHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH---HHHHHHhCchH
Confidence            4444567888888888888888886 4555556666667777776655211100000001111111   11112221122


Q ss_pred             ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccch
Q 010291           88 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      .+..++.=+.++.+..+...+.+..++...-+ .....-.+...+..++..+++.  ...+.-.+..++.|=.   ..|.
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l---g~r~  793 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL---GGRV  793 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH---hhcc
Confidence            44555555666777777777777666652211 1111222334566777777654  3334455555554422   1111


Q ss_pred             hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH---HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291          165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD---FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                      +-.-...+..++..|.++++.++..|+..++.++.--..+.+   +...|.+ ..-.+..........+.+++..+..+.
T Consensus       794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv-LyEylgeeypEvLgsILgAikaI~nvi  872 (1172)
T KOG0213|consen  794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV-LYEYLGEEYPEVLGSILGAIKAIVNVI  872 (1172)
T ss_pred             ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH-HHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            111123345677889999999999999999988763222222   2222221 111111111222233344444444333


Q ss_pred             --------hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec-CCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291          242 --------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKL  312 (513)
Q Consensus       242 --------~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  312 (513)
                              -.+++|.|..+|++.+..|++++...++.+|.......-..+ .-.---|+.+|.+-+.++|+.|...+..+
T Consensus       873 gm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~I  952 (1172)
T KOG0213|consen  873 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYI  952 (1172)
T ss_pred             cccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence                    357899999999999999999999999999864332110000 00123477778888889999999999988


Q ss_pred             hhcccc
Q 010291          313 ANKATT  318 (513)
Q Consensus       313 ~~~~~~  318 (513)
                      ++-..+
T Consensus       953 akaIGP  958 (1172)
T KOG0213|consen  953 AKAIGP  958 (1172)
T ss_pred             HHhcCH
Confidence            875443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.57  E-value=0.0022  Score=65.96  Aligned_cols=291  Identities=16%  Similarity=0.128  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG   94 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   94 (513)
                      .+.+++++|..+++.+...-.+. ...--...++.+++-|  ++.-.|..|++++..++...-..-..-.-..+++.+..
T Consensus       582 ~DqeVkeraIscmgq~i~~fgD~-l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~  658 (1233)
T KOG1824|consen  582 SDQEVKERAISCMGQIIANFGDF-LGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELAS  658 (1233)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHH
Confidence            46889999999998887521111 0000112344444444  46678999999999998654332211122346777777


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChH
Q 010291           95 LLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV  173 (513)
Q Consensus        95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  173 (513)
                      .+......++.....++..|........ ..+. .-++..+..++.+.+..+.+.|...|..+....+..........++
T Consensus       659 flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~  737 (1233)
T KOG1824|consen  659 FLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILD  737 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHH
Confidence            7776666677666666666653221111 1111 1234456666777888899999999999988776655445566788


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHH----hccc--Ccch-HHHHHh--hcCcccccc---hhhhhhhhHHHHHHHHHHHHHHh
Q 010291          174 PLLKLLDSKNGSLQHNAAFALY----GLAD--NEDN-VADFIR--VGGVQKLQD---GEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       174 ~L~~ll~~~~~~~~~~a~~~L~----~l~~--~~~~-~~~~~~--~g~i~~L~~---~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                      .++.+++++-  ++..|+.++.    .+..  .++. ......  .+-+..-+.   ..........|++.-....... 
T Consensus       738 ~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-  814 (1233)
T KOG1824|consen  738 EIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-  814 (1233)
T ss_pred             HHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-
Confidence            8999998764  2222222222    2222  1111 111111  011110000   0012233445544322222211 


Q ss_pred             hhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          242 HGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .......|+.-+++  .+..++.-|...++.+-+..+.   ....+.-..++..+++++.+++.+|+.||++++.+
T Consensus       815 s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg  887 (1233)
T KOG1824|consen  815 SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG  887 (1233)
T ss_pred             chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC
Confidence            22234444444443  3455677777777777654331   11223345677778888888888888888888763

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.55  E-value=0.00014  Score=48.83  Aligned_cols=55  Identities=36%  Similarity=0.391  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL   72 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l   72 (513)
                      |.+|..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998765555444 4445799999999999999999999999875

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.53  E-value=0.0033  Score=66.46  Aligned_cols=259  Identities=15%  Similarity=0.102  Sum_probs=150.7

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhHHHHHHhCCChHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQP   91 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~   91 (513)
                      ...+.+..|+..|..++..-.   ....-..++|.++.++.++..+||..|+.+|..+...   -+..-..++..-.+|.
T Consensus       435 k~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~  511 (1431)
T KOG1240|consen  435 KTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH  511 (1431)
T ss_pred             hcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence            356788999999999887421   1122234799999999999999999999999888632   2222344555567888


Q ss_pred             HHHhhcC-CChHHHHHHHHHHHHhhcC------------------Cchh----------hHHHHhcCChHHHHHHhCCCC
Q 010291           92 VIGLLSS-CCSESQREAALLLGQFAAT------------------DSDC----------KVHIVQRGAVRPLIEMLQSPD  142 (513)
Q Consensus        92 L~~ll~~-~~~~~~~~a~~~L~~l~~~------------------~~~~----------~~~~~~~~~i~~L~~~l~~~~  142 (513)
                      |-.++.+ ....++..-+..|..|+..                  +++.          .......++-..+..++.+++
T Consensus       512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~  591 (1431)
T KOG1240|consen  512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP  591 (1431)
T ss_pred             hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence            8888887 3444454444444444310                  1110          000011122233445555555


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291          143 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI  222 (513)
Q Consensus       143 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~  222 (513)
                      +-|+..-+..|.-||.-...++  .+.-.+..|...|.+.|+.++..-...|..+|..-..+                  
T Consensus       592 ~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r------------------  651 (1431)
T KOG1240|consen  592 PIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR------------------  651 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee------------------
Confidence            5666655555666653111100  01112445667777777666665555555544321110                  


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchh
Q 010291          223 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                                       -.+...+|.|.+-|.++++.|...|++++.-|+...-.++..+ -..++...-++..++.=+|
T Consensus       652 -----------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR  713 (1431)
T KOG1240|consen  652 -----------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIR  713 (1431)
T ss_pred             -----------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHH
Confidence                             0134467777777888888888888888888876554332211 1244555566667777888


Q ss_pred             hhHHHHHHHhhh
Q 010291          303 LDGAVALFKLAN  314 (513)
Q Consensus       303 ~~a~~~L~~l~~  314 (513)
                      ..++..+...+.
T Consensus       714 ~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  714 RAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHHh
Confidence            888777776654

>smart00875 BACK BTB And C-terminal Kelch

Probab=97.52  E-value=0.00014  Score=56.16  Aligned_cols=47  Identities=11%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHH
Q 010291          448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE  494 (513)
Q Consensus       448 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~  494 (513)
                      |+.++.+|+.|+++.|.+.|.+||.+||..+.++++|.+||.+.+.+
T Consensus         1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~   47 (101)
T smart00875        1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLS   47 (101)
T ss_pred             CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHH
Confidence            56789999999999999999999999999999999999997654443

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.51  E-value=0.00018  Score=48.27  Aligned_cols=55  Identities=31%  Similarity=0.381  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291          101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus       101 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      +.+|..|+++|++++...++.... ....+++.|+.+|+++++.|+..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999988665554433 4567899999999999999999999999875

...

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.50  E-value=0.014  Score=50.83  Aligned_cols=147  Identities=15%  Similarity=0.196  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCh-hHHHHHHhCCChHHHH
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVI   93 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~   93 (513)
                      ..+|+..|.-++. +++.+..+.+..+--.+-.+|..     +...+|..+++.++.+....+ +.-..+...++++..+
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            4567777777777 79999999998876667777762     457799999999999997544 4556677889999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhhH------HHHh-cCChH-HHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCKV------HIVQ-RGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~-~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      +.++.+....+..|..++..+..++....-      .+.. ...+. .+.++.+.+++.+.++++++..+|+.++..|..
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a  254 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA  254 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999866553221      1111 11223 334555678999999999999999988877765


Q ss_pred             hH
Q 010291          166 IA  167 (513)
Q Consensus       166 ~~  167 (513)
                      +.
T Consensus       255 L~  256 (293)
T KOG3036|consen  255 LR  256 (293)
T ss_pred             HH
Confidence            54

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.50  E-value=0.00019  Score=62.60  Aligned_cols=88  Identities=17%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             CCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCC--ceecCCCCHHHHHHHHHHHhcCccccC---HHHH
Q 010291          342 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDVT---LDIA  416 (513)
Q Consensus       342 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Y~~~~~~~---~~~~  416 (513)
                      .....|+.+......|++||++|++|+|+|+-+.+++-......  .+..-+++-+.|+.+|+|+|+|..-+.   ..++
T Consensus       127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~  206 (401)
T KOG2838|consen  127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS  206 (401)
T ss_pred             eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence            34556888888889999999999999999999887643222222  345557899999999999999987543   3445


Q ss_pred             HHHHHHHHHhcHH
Q 010291          417 QDLLRAADQYLLE  429 (513)
Q Consensus       417 ~~ll~~A~~~~~~  429 (513)
                      .-+-.++.-|+.+
T Consensus       207 diL~QL~edFG~~  219 (401)
T KOG2838|consen  207 DILEQLCEDFGCF  219 (401)
T ss_pred             HHHHHHHHhhCCc
Confidence            5556666666643

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.47  E-value=0.00031  Score=43.69  Aligned_cols=39  Identities=38%  Similarity=0.609  Sum_probs=36.0

Q ss_pred             chhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 010291           35 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV   73 (513)
Q Consensus        35 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~   73 (513)
                      ++++..+.+.|+++.|+++|.+++++++..++++|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            357888999999999999999989999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0051  Score=66.63  Aligned_cols=298  Identities=16%  Similarity=0.104  Sum_probs=165.7

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL   95 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   95 (513)
                      .+.-+..|+..++.++.. ...+..-.-...||.|.+.=.++++.|+..-..+...|..++....+... ..++.-|+.-
T Consensus       970 ~wnSk~GaAfGf~~i~~~-a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen  970 TWNSKKGAAFGFGAIAKQ-AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred             hhhcccchhhchHHHHHH-HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence            356677888888888873 22222222234577777776688999988777666667666544433322 3467777777


Q ss_pred             hcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCCCHHHHHH---HHHHHHHHhhcc-ccchhhHhc
Q 010291           96 LSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREM---SAFALGRLAQDM-HNQAGIAHN  169 (513)
Q Consensus        96 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~---a~~~L~~l~~~~-~~~~~~~~~  169 (513)
                      +.+..+++|+.+|.+|..|..+.+...  +.+  ......+...+.+=.+.+|+.   ++.+|..++... +.-.-....
T Consensus      1048 lt~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence            788899999999999999997755322  221  123333444444434556544   455555555211 110000001


Q ss_pred             CChHHHHHHhc-----CCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh--------------------hh
Q 010291          170 GGLVPLLKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI--------------------VQ  224 (513)
Q Consensus       170 ~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~--------------------~~  224 (513)
                      ..++.++..+-     +.-+++++.++.++..|+.+....-.-.-...|+.|.+....                    .+
T Consensus      1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealD 1205 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALD 1205 (1702)
T ss_pred             HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHH
Confidence            12333333332     444788999999999998754331111112222222220000                    00


Q ss_pred             hhH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhh
Q 010291          225 ATK----------DCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL  293 (513)
Q Consensus       225 ~~~----------~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~l  293 (513)
                      +.+          ..+..+++.+..-.-...+|.+.++++. -.-..+..++..+..|+..-..-..-.....+..++..
T Consensus      1206 t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g 1285 (1702)
T KOG0915|consen 1206 TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPG 1285 (1702)
T ss_pred             HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhc
Confidence            000          0011112222222334567777777776 34455777777777776421111112234456778888


Q ss_pred             hcCCCcchhhhHHHHHHHhhhccc
Q 010291          294 LGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       294 l~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      +.+.++.+++.-+.++.+++....
T Consensus      1286 ~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1286 AKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             cccccHHHHHHHHHHHHHHHhcCC
Confidence            888999999999999999987544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.43  E-value=0.0048  Score=63.54  Aligned_cols=168  Identities=15%  Similarity=0.165  Sum_probs=122.9

Q ss_pred             hccCCHHHHHHHHH-HHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291           12 LEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ   90 (513)
Q Consensus        12 L~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   90 (513)
                      +.+.+...|..|++ +|+.++.|++ ...      ..+-+++...+.|.++++..-.-|...+...++..-.     ++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence            44556777778876 5556666533 111      2344555555788999998888888888877743222     467


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcC
Q 010291           91 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG  170 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  170 (513)
                      .+.+=+.++++.+|-.|.++++.+-  .++..     ..+++++.+++.++++.||..|+-++.++-+  -++....+.|
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g  166 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELG  166 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhccc
Confidence            7778888899999999999988883  22221     2367889999999999999999999999864  2344455677


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          171 GLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       171 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      .+..+..++.+.++.+..+|+.++..+...
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            888889999999999999999999988754

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.40  E-value=0.00089  Score=51.78  Aligned_cols=80  Identities=16%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCC-CCCCceecCCCCHHHHHHHHHHHhcCccc---------------
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIPNIRWEVFELMMRFIYTGSVD---------------  410 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~---------------  410 (513)
                      +.+.. +|..|.+.+.+.. .|..++.|+.+.-.+ .....|++++++..+++.+++|++.-.-.               
T Consensus         4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~   82 (104)
T smart00512        4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA   82 (104)
T ss_pred             EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence            33443 6789999999775 999999999753222 22258999999999999999999853211               


Q ss_pred             ----cCHHHHHHHHHHHHHhcH
Q 010291          411 ----VTLDIAQDLLRAADQYLL  428 (513)
Q Consensus       411 ----~~~~~~~~ll~~A~~~~~  428 (513)
                          ++.+.+.+|+.||+++++
T Consensus        83 ~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       83 EFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCC
Confidence                344567788888887764

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=97.40  E-value=0.00047  Score=62.88  Aligned_cols=89  Identities=18%  Similarity=0.274  Sum_probs=75.0

Q ss_pred             eeehhhHHHHhhcCHHHHHhccCCCCC-CCCCceecC-CCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHhcHHHHH
Q 010291          355 RRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK  432 (513)
Q Consensus       355 ~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~  432 (513)
                      +.|.+.+.+|...=.||+..+.....+ +...+|+|. +.+-.+|+=+++|++.....++.+++..++.-|+|++|++|.
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv   93 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV   93 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence            679999999999999999999652222 222345554 478899999999999988889999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 010291          433 RLCEYTIAQDI  443 (513)
Q Consensus       433 ~~c~~~l~~~~  443 (513)
                      +.|-.|+..++
T Consensus        94 e~cl~y~~~~~  104 (317)
T PF11822_consen   94 EECLQYCHDHM  104 (317)
T ss_pred             HHHHHHHHHhH
Confidence            99999996653

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.39  E-value=0.0014  Score=64.31  Aligned_cols=187  Identities=13%  Similarity=0.075  Sum_probs=120.0

Q ss_pred             CCCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         1 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +.|++|.|...|++....++.+....++.++...++....--.-.+---|+.+|++-+.++|..|...++.++..     
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a-----  760 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA-----  760 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-----
Confidence            468899999999999999999999999999987776322211222344688899999999999999999999743     


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                        +.-..++..|++-|+..+...+.-..-+++-.+..+-.       -.++|.|+.=-..++..++.-.+.+++.+...-
T Consensus       761 --iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi  831 (975)
T COG5181         761 --IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYI  831 (975)
T ss_pred             --cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence              11112344444444444333332222233322211111       135667776666778889988888888776433


Q ss_pred             ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      .+...-.--...+.|-..+.+.|+.-+..|...+.+|+-+.
T Consensus       832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            22211111123444667777788888888889999888654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.0013  Score=64.91  Aligned_cols=186  Identities=18%  Similarity=0.217  Sum_probs=129.1

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCc-----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKND-----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      ...++++++++.++|..|++.+.-.+...+     ++-+.-....+...+.+.+.+.+..+|..|+.+|+.+-.-+++.-
T Consensus       237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i  316 (823)
T KOG2259|consen  237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII  316 (823)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence            456778888899999999776665543221     111111122346677777777778888888888877755444321


Q ss_pred             H--------------------------------------------------HHHhCCChHHHHHhhcCCChHHHHHHHHH
Q 010291           81 K--------------------------------------------------EVLAAGALQPVIGLLSSCCSESQREAALL  110 (513)
Q Consensus        81 ~--------------------------------------------------~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  110 (513)
                      .                                                  .++..|+-..++.-++++-.+||.+|+..
T Consensus       317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~S  396 (823)
T KOG2259|consen  317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVAS  396 (823)
T ss_pred             HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHH
Confidence            1                                                  12223344566666777778999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHH
Q 010291          111 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA  190 (513)
Q Consensus       111 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  190 (513)
                      ++.|+...|.....     .+..|+++++++...++..|..+|..++.+-..+     +.-++.+...|.+.+.++++..
T Consensus       397 l~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~s~dvRe~l  466 (823)
T KOG2259|consen  397 LCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR-----EEQLRQILESLEDRSVDVREAL  466 (823)
T ss_pred             HHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhcCHHHHHHH
Confidence            99999877765443     5679999999999999999999999998763333     3456678888888888888777


Q ss_pred             HHHHHhcccCc
Q 010291          191 AFALYGLADNE  201 (513)
Q Consensus       191 ~~~L~~l~~~~  201 (513)
                      -..|.+.-...
T Consensus       467 ~elL~~~~~~d  477 (823)
T KOG2259|consen  467 RELLKNARVSD  477 (823)
T ss_pred             HHHHHhcCCCc
Confidence            66666543333

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.35  E-value=0.00057  Score=42.47  Aligned_cols=39  Identities=31%  Similarity=0.516  Sum_probs=35.4

Q ss_pred             chhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291          119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus       119 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ++.+..+.+.|+++.|++++++++++++..++++|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346777889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.023  Score=59.49  Aligned_cols=111  Identities=26%  Similarity=0.389  Sum_probs=87.6

Q ss_pred             CChhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            3 GGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         3 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      |-.+-+..++. ..++.++.-|+..+..... +.+....+...|++..|+.+|. +-|..|+.++..|..|+.. ++.-+
T Consensus      1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~k 1847 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGK 1847 (2235)
T ss_pred             cccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHH
Confidence            44555666664 3678899999999988876 7889999999998888888886 4578899999999999976 55556


Q ss_pred             HHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAA  116 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~  116 (513)
                      ...+.|++..+..++ .+..+..+..++..+..+..
T Consensus      1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            667788877777655 45667888889999998864

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.29  E-value=0.011  Score=50.90  Aligned_cols=92  Identities=23%  Similarity=0.279  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC-ChHHHHH
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIG   94 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~   94 (513)
                      +|.+|.+++.+++.++...+...+.     .++.+...|.++++.+|+.|+.+|.+|....-     +.-.| .+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence            5789999999999999754443322     47889999999999999999999999985421     11123 3477888


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcC
Q 010291           95 LLSSCCSESQREAALLLGQFAAT  117 (513)
Q Consensus        95 ll~~~~~~~~~~a~~~L~~l~~~  117 (513)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999855

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.016  Score=51.19  Aligned_cols=234  Identities=20%  Similarity=0.234  Sum_probs=141.4

Q ss_pred             hhHHHHhhccC--CHHHHHHHHHHHHHhhccCc----------h----------hHHHHHhcCCHHHHHHhhc--CCCHH
Q 010291            5 IPPLVELLEFT--DTKVQRAAAGALRTLAFKND----------E----------NKNQIVECNALPTLILMLR--SEDSA   60 (513)
Q Consensus         5 i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~----------~----------~~~~i~~~g~i~~Lv~lL~--~~~~~   60 (513)
                      +..+.+.|...  ...-+.+|+..|.++.....          +          .-.++.+...++.++..|.  ++.+-
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pm   84 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPM   84 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchH
Confidence            34555555442  23456677777776654211          0          0112334567888888887  45688


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh-------HHH-----Hhc
Q 010291           61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-------VHI-----VQR  128 (513)
Q Consensus        61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-------~~~-----~~~  128 (513)
                      +|..|..+|+.+. . +         +.++.+-++.+++..++++.+..++..+-..+.-..       ...     ...
T Consensus        85 vRhEAaealga~~-~-~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~  153 (289)
T KOG0567|consen   85 VRHEAAEALGAIG-D-P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANL  153 (289)
T ss_pred             HHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCcccc
Confidence            8999999999886 3 2         245666677766777788777777766642111000       000     011


Q ss_pred             CChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291          129 GAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  206 (513)
Q Consensus       129 ~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  206 (513)
                      +-+..+-..+.+.  ..--++.+...|+|+..          +..+..+.+-+..++.-.+..++.++++|-.       
T Consensus       154 ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------  216 (289)
T KOG0567|consen  154 SSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------  216 (289)
T ss_pred             ccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------
Confidence            1233333333322  11234555666666421          1235556666666667777778778777653       


Q ss_pred             HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecC
Q 010291          207 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDG  284 (513)
Q Consensus       207 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~  284 (513)
                                                          ...++.|...|..  .++-||..|+.+|+.++.          .
T Consensus       217 ------------------------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e  250 (289)
T KOG0567|consen  217 ------------------------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------E  250 (289)
T ss_pred             ------------------------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------H
Confidence                                                2246667777766  567789999999997763          5


Q ss_pred             CchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291          285 GGLELLLGLLGSTNPKQQLDGAVALFKL  312 (513)
Q Consensus       285 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l  312 (513)
                      ..++.|.+.+.+..+-+++.+..+|-.+
T Consensus       251 ~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  251 DCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            5788899999998888888777766544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.26  E-value=0.0066  Score=59.23  Aligned_cols=299  Identities=12%  Similarity=0.023  Sum_probs=164.8

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      ++++++.-+..|+.+++....+..+....-+-...+|.+...+.++.--++..++||++.++..   ....+-..|.++.
T Consensus       375 i~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~  451 (858)
T COG5215         375 IRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVL  451 (858)
T ss_pred             ccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccH
Confidence            4567888899999999999987555444444456788888888888888999999999999844   2233333454544


Q ss_pred             HHHhhc---CCChHHHHHHHHHHHHhhcCCchhhHH---HHh---cCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhcc
Q 010291           92 VIGLLS---SCCSESQREAALLLGQFAATDSDCKVH---IVQ---RGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        92 L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~---~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      .+....   .+.+.+..++.|...|+..+-++....   ++.   ..++..|+..-.  .++...|..+..+|+.|..-.
T Consensus       452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         452 EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence            444322   256778889999999998654443211   111   112223332221  235567777777777776433


Q ss_pred             ccchhhHhcCC-----------hHHHHHHhcCCC----HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhh--
Q 010291          161 HNQAGIAHNGG-----------LVPLLKLLDSKN----GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV--  223 (513)
Q Consensus       161 ~~~~~~~~~~~-----------i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~--  223 (513)
                      +..-.-...|.           +..+-+.+...|    .+++.+.+..|..+.+....--+-++...+..+++...+.  
T Consensus       532 ~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~  611 (858)
T COG5215         532 PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKP  611 (858)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCC
Confidence            33211111111           222222222222    4556666666665543111100000000111111111111  


Q ss_pred             ----hhhH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC
Q 010291          224 ----QATK---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS  296 (513)
Q Consensus       224 ----~~~~---~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~  296 (513)
                          +..-   .....++..-.+.+-..++|-|..-|+..+..+...|.+.++.|+..-..............|++.+++
T Consensus       612 t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss  691 (858)
T COG5215         612 TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS  691 (858)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence                0000   111223333445566778999999998899999999999999997643322223334456778888876


Q ss_pred             --CCcchhhhHHHHHHHhh
Q 010291          297 --TNPKQQLDGAVALFKLA  313 (513)
Q Consensus       297 --~~~~v~~~a~~~L~~l~  313 (513)
                        .+-+++-....+...++
T Consensus       692 ~~~~R~lKPaiLSvFgDIA  710 (858)
T COG5215         692 EATHRDLKPAILSVFGDIA  710 (858)
T ss_pred             hhhccccchHHHHHHHHHH
Confidence              33344444444444444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.22  E-value=0.0064  Score=49.90  Aligned_cols=122  Identities=13%  Similarity=0.164  Sum_probs=96.6

Q ss_pred             HHHHHhcCCHHHHHHhhcCCC------HHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHHHHHHH
Q 010291           38 KNQIVECNALPTLILMLRSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL  109 (513)
Q Consensus        38 ~~~i~~~g~i~~Lv~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~  109 (513)
                      ...+++.||+..|+++++++.      .+....++.++..|-.+. ...........+..++.+++..  +..+.+.|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            456788899999999999654      367777888888877542 3234555556677788887764  5789999999


Q ss_pred             HHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291          110 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus       110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      .|.++...++.....+.+.=-++.|+..|+.++++++.++...+..|....
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            999999887776777777778999999999999999999999998887443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.1  Score=55.03  Aligned_cols=300  Identities=14%  Similarity=0.109  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHh----cCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291           19 VQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        19 ~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   93 (513)
                      -...++.+|.|+...+|+....+..    .|..+.+..+|. ..++.++..|+..+..++.+ .++...+...|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence            4567899999999888876554433    366777778887 56788999999999888766 66778889999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc--chhhHhcC
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QAGIAHNG  170 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~  170 (513)
                      .+|. +-+..++.++.+|..|++. ++......+.|++..+.+++.. .++..+..++..++.|..++-.  |-.+--..
T Consensus      1820 ~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred             HHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence            8885 4677899999999999855 5656667777888777777764 5788999999999999876532  21111112


Q ss_pred             ChHH-HHHHhcCC-------------CHH------HHHHHHHHHHhcccCc--ch-HHHHHhhcCcccccchhhhhhhhH
Q 010291          171 GLVP-LLKLLDSK-------------NGS------LQHNAAFALYGLADNE--DN-VADFIRVGGVQKLQDGEFIVQATK  227 (513)
Q Consensus       171 ~i~~-L~~ll~~~-------------~~~------~~~~a~~~L~~l~~~~--~~-~~~~~~~g~i~~L~~~~~~~~~~~  227 (513)
                      .++. ++..++++             +++      .+...-..+..++..-  +. ....++.+.-+.   ........+
T Consensus      1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEq---sAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQ---SAGTSEADK 1974 (2235)
T ss_pred             hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchh---hcchhhhcc
Confidence            2222 33333322             111      1111112222222100  00 000000000000   000111223


Q ss_pred             HHHHHHHHHHHHH------------hhhhhHHHHHHHHHHhhcchhh--hHHHHHhhccC-CCCcceeeecCCchHHHHh
Q 010291          228 DCVAKTLKRLEEK------------IHGRVLNHLLYLMRVAEKGVQR--RVALALAHLCS-PDDQRTIFIDGGGLELLLG  292 (513)
Q Consensus       228 ~~~~~~~~~~~~~------------~~~~~l~~Lv~lL~~~~~~v~~--~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~  292 (513)
                      .|..+..-....+            +-.+.+++++++|..++++-..  ....++..|.+ .+.....+-..|.+|+++.
T Consensus      1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence            3333322111111            2234667777777776554322  22233444433 4555667778899999999


Q ss_pred             hhcCCCcchhhhHHHHHHHhhhccccccccCC
Q 010291          293 LLGSTNPKQQLDGAVALFKLANKATTLSSVDA  324 (513)
Q Consensus       293 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~  324 (513)
                      .+...+..+-..|..+|-.|+.+..+...+.+
T Consensus      2055 Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~ 2086 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQFCCDAMAQ 2086 (2235)
T ss_pred             HHHhcCCcCcHHHHHHHHHHhhccHHHHHHhc
Confidence            99877766667888888888877665555544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.019  Score=57.49  Aligned_cols=259  Identities=16%  Similarity=0.180  Sum_probs=157.1

Q ss_pred             HHHhhccCC--HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291            8 LVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus         8 Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +-.+|-+++  +-++..|+-+|..+-+.+|+..   ...+..+.++.+|.+.+..+...+...+-.++..+++...--+ 
T Consensus       151 I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~-  226 (938)
T KOG1077|consen  151 IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL-  226 (938)
T ss_pred             hHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH-
Confidence            335565543  6788899999999988666532   2234578899999988888888888888888887765422111 


Q ss_pred             CCChHHHHHhhc-------------CCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCC----C---HH
Q 010291           86 AGALQPVIGLLS-------------SCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSP----D---VQ  144 (513)
Q Consensus        86 ~g~i~~L~~ll~-------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~----~---~~  144 (513)
                      .-.+..|..+..             -+.|.+....+++|.+.-.. ++..+..+.+  +++.++...+++    +   ..
T Consensus       227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~n  304 (938)
T KOG1077|consen  227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSN  304 (938)
T ss_pred             HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhh
Confidence            001222222221             14578888888888887422 2233333332  445555544432    1   11


Q ss_pred             HHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh
Q 010291          145 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ  224 (513)
Q Consensus       145 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~  224 (513)
                      .+...+.-.-+++.+-+.-..+. ...+..|-+++.+....++.-|+..++.|+........+-                
T Consensus       305 a~naVLFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK----------------  367 (938)
T KOG1077|consen  305 AKNAVLFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK----------------  367 (938)
T ss_pred             hHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH----------------
Confidence            22333333444443333222222 1355667777777777888888887777776543322221                


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhh
Q 010291          225 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL  303 (513)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  303 (513)
                                        . -...++..|+ ..|..+|..|+..|..+|..++.+.      .+..|++.+.+.++.+|+
T Consensus       368 ------------------~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------IV~elLqYL~tAd~sire  422 (938)
T KOG1077|consen  368 ------------------K-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------IVAELLQYLETADYSIRE  422 (938)
T ss_pred             ------------------H-HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------HHHHHHHHHhhcchHHHH
Confidence                              1 1455677788 5889999999999999997666543      356678888878888887


Q ss_pred             hHHHHHHHhhh
Q 010291          304 DGAVALFKLAN  314 (513)
Q Consensus       304 ~a~~~L~~l~~  314 (513)
                      +.+.-+.-|++
T Consensus       423 eivlKvAILaE  433 (938)
T KOG1077|consen  423 EIVLKVAILAE  433 (938)
T ss_pred             HHHHHHHHHHH
Confidence            76554444444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.18  E-value=0.013  Score=53.01  Aligned_cols=226  Identities=14%  Similarity=0.119  Sum_probs=135.0

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHh-CC
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AG   87 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g   87 (513)
                      ++.-++-.+.-|.+++.++.. .++.|..+..+ ..-..++.+++.  ++..++-..+.+++.++.+ +.+.+.+-. ..
T Consensus       158 ~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~d  235 (432)
T COG5231         158 SQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence            344566678889999999987 56666655443 344567777774  4678999999999999976 444333322 24


Q ss_pred             ChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCch-hhHHHHhcCChHHHHHHhCC---CCHHHHHHHHHHHHHHhhc---
Q 010291           88 ALQPVIGLLSSC-CSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQD---  159 (513)
Q Consensus        88 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~~---  159 (513)
                      .+..++.+.+.. ...+.+-++.++.|++...|. ....+.-.|-+.+-++.|.+   .|++++...-..=..|..+   
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            566666666543 467788899999999975442 22333444545555655543   3666553332222222111   


Q ss_pred             -------------------cccc---------hhhHhc--CChHHHHHHhcCCCHH-HHHHHHHHHHhccc-CcchHHHH
Q 010291          160 -------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKNGS-LQHNAAFALYGLAD-NEDNVADF  207 (513)
Q Consensus       160 -------------------~~~~---------~~~~~~--~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~-~~~~~~~~  207 (513)
                                         +..+         ..+.+.  ..+..|.++++..++. ....|+.-+..+.+ .|+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence                               0000         111111  1244466666665544 33445555555544 34333322


Q ss_pred             HhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291          208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       208 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~  272 (513)
                                                       ...|+-..++.++.+++++|+..|+.++..+.
T Consensus       396 ---------------------------------~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         396 ---------------------------------SKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             ---------------------------------HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence                                             34556778899999999999999999987664

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0036  Score=51.81  Aligned_cols=90  Identities=21%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             cCeeehhhHHHHhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccc---------------------
Q 010291          353 EGRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------------  410 (513)
Q Consensus       353 ~~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~---------------------  410 (513)
                      +|+.|.+-..+.. .|..+++++... ..... ..|+|+.++...|..+++|+|.-.-+                     
T Consensus        13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~   90 (162)
T KOG1724|consen   13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA   90 (162)
T ss_pred             CCceeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence            6778888877655 888888888532 22222 58999999999999999999973311                     


Q ss_pred             ----cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCC
Q 010291          411 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS  444 (513)
Q Consensus       411 ----~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~  444 (513)
                          +..+++.+++.+|+||++++|...|.+.+...+.
T Consensus        91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik  128 (162)
T KOG1724|consen   91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK  128 (162)
T ss_pred             HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence                2345789999999999999999999998887763

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.12  E-value=0.013  Score=52.08  Aligned_cols=193  Identities=12%  Similarity=0.116  Sum_probs=134.2

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHH-------hhcCCC-----HHHHHHHHHHHHHhhcCChhHHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLIL-------MLRSED-----SAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~-------lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      -+++.|+.|+.-|+.--+..++....+-. .|.+..|++       .+..++     ..-...|+..|..+|.+ ++.|.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence            36788999988888776655565555554 466666654       222221     13344566666677765 88899


Q ss_pred             HHHhCCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           82 EVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      .+++.++.-.|..+|+..+     +.+|-.+.++++.+... +++....+.+.+++|..++.++.++.-.+..|..++..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999988988887532     46788888999998843 45666677889999999999999988888999999999


Q ss_pred             HhhccccchhhHh--------cCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          156 LAQDMHNQAGIAH--------NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       156 l~~~~~~~~~~~~--------~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      +-.++.+-..+..        ...+.. +..+...+++.+..+.+++-..|+.++..+..+.
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~  227 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR  227 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence            8877665433221        122333 3345567889999999999999999998776665

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.08  E-value=0.014  Score=60.31  Aligned_cols=140  Identities=18%  Similarity=0.183  Sum_probs=105.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      .+.+++...+.|.++++-.-..|...++.+|+....     .+..+..=++++|+.+|-.|+++++.+=.  ++.-    
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~----  125 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL----  125 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH----
Confidence            344555555566666666666666666655522221     35667777789999999999999988842  2221    


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                       ..+++++.++++++++.||+.|+.++.++-+.++.   ...+.|.+..+..++.+.+|.+..+|..+|..+...
T Consensus       126 -~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         126 -GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence             23688999999999999999999999999866543   455678888899999999999999999999998653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.07  E-value=0.043  Score=51.92  Aligned_cols=200  Identities=14%  Similarity=0.129  Sum_probs=143.8

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHH-----HHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-----QIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHS   75 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~   75 (513)
                      |.+..|+..|..-+-+.|..++.+..++.+...+.+.     .+...  .++..|+..  .+++++-..+-..|+..+..
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~mlRec~k~  153 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDMLRECIKH  153 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHHHHHHHhh
Confidence            4567788888888888999999999999876544432     22221  222333322  34677777777788888876


Q ss_pred             ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHH
Q 010291           76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFA  152 (513)
Q Consensus        76 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~  152 (513)
                       +...+.+.....+..+.+.+..++.++...|..++..+-............   ..+......++.+++--++..++..
T Consensus       154 -e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  154 -ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             -HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             -HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence             666778888888889999999999999999999999977665555444443   2356677888999999999999999


Q ss_pred             HHHHhhccccchh----hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH
Q 010291          153 LGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA  205 (513)
Q Consensus       153 L~~l~~~~~~~~~----~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  205 (513)
                      |+.+-.+..+...    +.+...+..++.+|++++..++-.|..++--+..++..-.
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~  289 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP  289 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence            9999988887543    3345667789999999999999999999888877665433

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.05  E-value=0.0072  Score=64.05  Aligned_cols=232  Identities=17%  Similarity=0.070  Sum_probs=142.2

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhcc---CchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      .++|-++.++.++..++|..|+.+|..+...   -+..-..+..+=+.|.|-.++.+ ....+|..-+.+|..||...-.
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r  541 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR  541 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence            4688999999999999999999999888642   11112223333356677777776 4556666666677766632111


Q ss_pred             H---HHHHHhCC-------------------------ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCC
Q 010291           79 I---KKEVLAAG-------------------------ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  130 (513)
Q Consensus        79 ~---~~~~~~~g-------------------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  130 (513)
                      .   -+.+.+.|                         +=+....++.++.+-|++..+..|.-||......   -.+.=+
T Consensus       542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~i  618 (1431)
T KOG1240|consen  542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVI  618 (1431)
T ss_pred             HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccch
Confidence            1   01111111                         1133344555566666666666666666221110   011225


Q ss_pred             hHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhh
Q 010291          131 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV  210 (513)
Q Consensus       131 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  210 (513)
                      ++.|+..|++.|..+|..-...+..++.--  ...-+++..++.|.+-|.++.+-+...|++++..|+...--++..   
T Consensus       619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~---  693 (1431)
T KOG1240|consen  619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA---  693 (1431)
T ss_pred             HHHHHHHhcCccHHHHHHHHhhccceEEEE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---
Confidence            778888888888888866555555544211  122245566777888889999999999999999988754322211   


Q ss_pred             cCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          211 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       211 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                                                     -.+++.....+|-+++.-+|..++..|...+.
T Consensus       694 -------------------------------v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  694 -------------------------------VKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -------------------------------HHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence                                           12245556677777888888888888877654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.05  E-value=0.0085  Score=53.28  Aligned_cols=176  Identities=15%  Similarity=0.170  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-ChhHHHHHHhCCChHHHH
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~   93 (513)
                      ..+|+..+..++. +++.+..+.+..+.-.|.+.|+..     -..+|..+++.++.+... +++.-..+.+.+++|..+
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            4456677777787 899999999999888888888743     257899999999999973 345667777889999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhh------HHHH-hcCChHHHH-HHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCK------VHIV-QRGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~-~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      +.++.++.-.+..|..++..+..++.+..      +.+. -..++..++ .+.+++++.+.++.+++-..|+.++..+..
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            99999888888889999998875543221      1111 112333333 344567999999999999999998888776


Q ss_pred             hHhcCChHHH----HHHhcCCCHHHHHHHHHHHHhc
Q 010291          166 IAHNGGLVPL----LKLLDSKNGSLQHNAAFALYGL  197 (513)
Q Consensus       166 ~~~~~~i~~L----~~ll~~~~~~~~~~a~~~L~~l  197 (513)
                      +.. ...+.|    ...+-.+|+.++..-...+.|+
T Consensus       226 L~~-~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  226 LRQ-CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHH-HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHH-hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            653 111111    1112233566666555555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.04  E-value=0.0014  Score=50.78  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=61.0

Q ss_pred             hhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 010291            5 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS   75 (513)
Q Consensus         5 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~   75 (513)
                      +..|+++| .+.++.+..-||.-|+.+++..|..+..+-+.|+-..+++++.++|++|+..|+.++..+..+
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            56788888 456788888999999999999999999888899999999999999999999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.031  Score=58.91  Aligned_cols=255  Identities=17%  Similarity=0.173  Sum_probs=151.9

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhh
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCK  122 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~  122 (513)
                      ++++..|++.|++.+..+|..|+..++.++...|..    ....++..++.++.-. ++..-..++.+|..++...--..
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            357888888889999999999999999999876632    1123566666655432 34445588999999985432222


Q ss_pred             HHHHhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHHhhccccc--hhhHhcCChHHHHHHhcCCCHHHHHHHHH
Q 010291          123 VHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAF  192 (513)
Q Consensus       123 ~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  192 (513)
                      ..+.  .++|.+++-+.-        ....+|..|+.+++.+++.....  +.+...=.-..|...+-+.+-..++.|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2222  356666665542        24568999999999998654433  22222111112344455667788888888


Q ss_pred             HHHhcccCcchHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH--hhhhhHHHHHHH-HHHhhcchhhhHHHHH
Q 010291          193 ALYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALAL  268 (513)
Q Consensus       193 ~L~~l~~~~~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~Lv~l-L~~~~~~v~~~a~~aL  268 (513)
                      ++.....-..+.     .-|++.+.. ..++......|...-...+...  +...++.+|+.- +.+.|..+|+.++++|
T Consensus       494 AlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL  568 (1133)
T KOG1943|consen  494 ALQENVGRQGNF-----PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL  568 (1133)
T ss_pred             HHHHHhccCCCC-----CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            887655322221     012222222 2224444455554433222221  233455555554 6667899999999999


Q ss_pred             hhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291          269 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  312 (513)
Q Consensus       269 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  312 (513)
                      .+|+....   .....+.++.++....+.+...+.-+..+...+
T Consensus       569 ~~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev  609 (1133)
T KOG1943|consen  569 HKLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEV  609 (1133)
T ss_pred             HHHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence            99875422   223345677888777777777765544444443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.97  E-value=0.0037  Score=47.24  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291          104 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN  183 (513)
Q Consensus       104 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~  183 (513)
                      |..++.+|...+..-+.... -.-..++++++..+.+++..+|..|+.+|.|++........-.-...++.|.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            45566677766644333322 22235889999999999999999999999999865433222222456777889999999


Q ss_pred             HHHHHHHHHHHHhc
Q 010291          184 GSLQHNAAFALYGL  197 (513)
Q Consensus       184 ~~~~~~a~~~L~~l  197 (513)
                      +.++..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9986654 555443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.96  E-value=0.0084  Score=45.31  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--CCChHHHHHhhc
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS   97 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~   97 (513)
                      |..++.+|...+.+-+....... ..++++++.++.+++..||..|+.+|.+++...   +..+..  ..+.+.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence            56777788877765443322222 347899999999999999999999999998543   333332  357888888898


Q ss_pred             CCChHHHHHHHHHHHHh
Q 010291           98 SCCSESQREAALLLGQF  114 (513)
Q Consensus        98 ~~~~~~~~~a~~~L~~l  114 (513)
                      +.+++|+..| ..|-++
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            9999888766 444443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.92  E-value=0.26  Score=43.33  Aligned_cols=190  Identities=13%  Similarity=0.125  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHH-h------hc----CC-CHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLIL-M------LR----SE-DSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~-l------L~----~~-~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      +..++.|+.-|...-+..++....+.. .|....+++ .      |.    ++ .+.-...|+..|..++.+ ++.|..+
T Consensus        38 ~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASH-pdTr~~F  116 (293)
T KOG3036|consen   38 PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASH-PDTRRAF  116 (293)
T ss_pred             CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcC-cchHHHH
Confidence            445666666666655544454444433 354444443 1      11    11 223344555555556655 8889999


Q ss_pred             HhCCChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           84 LAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ++..+.-.+-.+|..     +.+-+|-.+.++++.+...++ +....+...+++|..++.+..++...+..|..++..+-
T Consensus       117 L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl  196 (293)
T KOG3036|consen  117 LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL  196 (293)
T ss_pred             HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            999888888888764     345788889999999985544 45556778999999999999999999999999999988


Q ss_pred             hccccchhhHh--------cCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH
Q 010291          158 QDMHNQAGIAH--------NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADF  207 (513)
Q Consensus       158 ~~~~~~~~~~~--------~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  207 (513)
                      .++.+-..+..        ...+.. +.++.+.++.....+++++..+|+.++..+..+
T Consensus       197 ldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL  255 (293)
T KOG3036|consen  197 LDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL  255 (293)
T ss_pred             hccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            77766433322        112223 445667788999999999999999988665544

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.91  E-value=0.0023  Score=60.98  Aligned_cols=186  Identities=16%  Similarity=0.117  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhc----CCchh---hHHHHhcC
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA----TDSDC---KVHIVQRG  129 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~---~~~~~~~~  129 (513)
                      .+.-++..|+++++-+.-+.........-......+...+.+.....+.++.|+++|++.    +-|..   ...+.. -
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-L  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-H
Confidence            344567777777776666533333334444566667777777778899999999999972    22321   111111 1


Q ss_pred             ChHHHHHHhC---CCCHHHHHHHHHHHHHHhhccccch----hhHhcCChHHH-HHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          130 AVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQA----GIAHNGGLVPL-LKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       130 ~i~~L~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      .+..++..-.   ..+.+++.++.++|.|+..--+.-.    .....+.+..+ ....-.....++.+++.+++||-.++
T Consensus       482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            2333333222   2466899999999999974222100    01112222222 22233456789999999999999877


Q ss_pred             chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCC
Q 010291          202 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP  274 (513)
Q Consensus       202 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~  274 (513)
                      ...-+-                               .-+...+++.|..++.+ .+..+|.+|+.+|..-...
T Consensus       562 a~~lq~-------------------------------~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  562 ALPLQT-------------------------------APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             cccccC-------------------------------CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            431100                               00233467788888877 7899999999999877654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.0038  Score=59.52  Aligned_cols=267  Identities=18%  Similarity=0.165  Sum_probs=133.0

Q ss_pred             ccCCHHHHHHHHHHHHHhhcc-----CchhHHHHHhcCCHHH------HHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH
Q 010291           13 EFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPT------LILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~------Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      ....+.++..+++++..+..+     .|+..+.-...|-.-.      .-.... +..+..+..++.++.++....... 
T Consensus       305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~-  383 (728)
T KOG4535|consen  305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN-  383 (728)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-
Confidence            345688888888888777542     2222221111111110      111111 223456667777777775332111 


Q ss_pred             HHHHhCCChHHHHHhhc-CCC---hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLS-SCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~-~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                         ...|--+...-++. ..|   .-++..|.+++.-+.-+............+...+...+.+..-..++.+.|+++|+
T Consensus       384 ---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI  460 (728)
T KOG4535|consen  384 ---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI  460 (728)
T ss_pred             ---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence               01111111222222 222   22445555555555434333233333445666677777777778899999999999


Q ss_pred             hhcc----cc-chhhHh-cC-ChHHHHHHh---cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhh
Q 010291          157 AQDM----HN-QAGIAH-NG-GLVPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT  226 (513)
Q Consensus       157 ~~~~----~~-~~~~~~-~~-~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~  226 (513)
                      +..-    ++ +..-.. .| .+..++...   ...+.+++.++.++|+|+..--+.   +.+.+               
T Consensus       461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~---i~~~~---------------  522 (728)
T KOG4535|consen  461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP---IEKPT---------------  522 (728)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH---hhhcc---------------
Confidence            8421    11 111100 01 111222222   123467888888888887641110   00000               


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHH-HHHHHhhcchhhhHHHHHhhccCCCCcc--eeeecCCchHHHHhhhcC-CCcchh
Q 010291          227 KDCVAKTLKRLEEKIHGRVLNHLL-YLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGS-TNPKQQ  302 (513)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~Lv-~lL~~~~~~v~~~a~~aL~~l~~~~~~~--~~l~~~~~i~~L~~ll~~-~~~~v~  302 (513)
                             ..   +..+. .+..+. ...-.....||.++|.+++||..++...  ..-....+.+.|..++.+ .+-.+|
T Consensus       523 -------~~---e~~~~-~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR  591 (728)
T KOG4535|consen  523 -------FA---EIIEE-SIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR  591 (728)
T ss_pred             -------HH---HHHHH-HHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence                   00   00011 111111 1222356789999999999999877642  222223345777777765 888999


Q ss_pred             hhHHHHHHHh
Q 010291          303 LDGAVALFKL  312 (513)
Q Consensus       303 ~~a~~~L~~l  312 (513)
                      ..|+.+|..-
T Consensus       592 i~AA~aL~vp  601 (728)
T KOG4535|consen  592 IRAAAALSVP  601 (728)
T ss_pred             ehhhhhhcCC
Confidence            9998877653

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.78  E-value=0.0052  Score=42.16  Aligned_cols=51  Identities=18%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 010291          353 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT  406 (513)
Q Consensus       353 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~  406 (513)
                      +|+.|.+.+.+.. .|+.++.|+.+...+..  .|++++++.+.++.+++|++.
T Consensus         9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence            6789999999777 99999999975432222  899999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.74  E-value=0.014  Score=55.18  Aligned_cols=205  Identities=13%  Similarity=0.120  Sum_probs=148.0

Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH-----HHHh--cCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQ--RGAVRPLIEMLQSPDVQLREMSAFAL  153 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L  153 (513)
                      ..+...+.+..|+..|..-+.+.+..++.+..++.+...+.+.     .+..  ..++..|+..-.  ++++.-.+...|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            4455668889999999999999999999999999866544432     2322  233444444333  556777888999


Q ss_pred             HHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc-ccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH
Q 010291          154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK  232 (513)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~  232 (513)
                      +.+.+++.-.+.+.....+..+.+....++-++...|..++..+ ..+.....++....                     
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---------------------  206 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---------------------  206 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---------------------
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---------------------
Confidence            99998887777888888899999999999999999999988875 44555545544322                     


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcc----eeeecCCchHHHHhhhcCCCcchhhhHHHH
Q 010291          233 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVA  308 (513)
Q Consensus       233 ~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  308 (513)
                               -..++...-.+|.+++.-.+..++..|+.+-.+..+.    +.+-+..-+..++.+|++++..+|.+|-.+
T Consensus       207 ---------~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv  277 (335)
T PF08569_consen  207 ---------YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV  277 (335)
T ss_dssp             ---------HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH
Confidence                     2235667778899999999999999999998766542    344444567889999999999999999998


Q ss_pred             HHHhhhccc
Q 010291          309 LFKLANKAT  317 (513)
Q Consensus       309 L~~l~~~~~  317 (513)
                      ..-+..++.
T Consensus       278 FKvFVANp~  286 (335)
T PF08569_consen  278 FKVFVANPN  286 (335)
T ss_dssp             HHHHHH-SS
T ss_pred             HHHHHhCCC
Confidence            888777643

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.70  E-value=0.041  Score=45.24  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=96.2

Q ss_pred             CCChhHHHHhhccCC------HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 010291            2 EGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV   73 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~   73 (513)
                      .||+..|++++.++.      .++...++.++..+..++--..+ ......|..++.....+  +..+.+.|+..|-++.
T Consensus        10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V   88 (160)
T PF11841_consen   10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAILESIV   88 (160)
T ss_pred             ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence            478999999998765      36777788899998886443443 44555778888887733  6899999999999999


Q ss_pred             cCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q 010291           74 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  122 (513)
Q Consensus        74 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  122 (513)
                      .+++.....+.+.=-++.|+..|...+.+++.++...+..|....++.+
T Consensus        89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            9988877888887789999999999999999999998888876655443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.67  E-value=0.064  Score=46.14  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCCh-HHHHHH
Q 010291          100 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL-VPLLKL  178 (513)
Q Consensus       100 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i-~~L~~l  178 (513)
                      ++.+|..++.+++-|+...+...+     ..++.+...|+++++.+|..|+.+|..|...+..+..    |-+ ..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence            467899999999999966655333     4688999999999999999999999999865443322    333 678888


Q ss_pred             hcCCCHHHHHHHHHHHHhcccC
Q 010291          179 LDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       179 l~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      +.++++.++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999998864

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.032  Score=56.45  Aligned_cols=231  Identities=16%  Similarity=0.133  Sum_probs=140.1

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .-|++||+-+|-..++.|..+-.  ++.-     ...+|.+..+|++.++.||+.|+-++..+-...+..     -.++.
T Consensus       106 kDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap  173 (948)
T KOG1058|consen  106 KDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP  173 (948)
T ss_pred             hhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence            44678888888888887777654  3322     235788888999999999999999998887553221     12344


Q ss_pred             HHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH---HHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           90 QPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI---EMLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        90 ~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      ..+-.+|. ..|+..+++|-..|...   +++.        ++..|.   .-+.+-++.++...+..+...|...+..+ 
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-  241 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-  241 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-
Confidence            55555554 45788888776655544   2331        222333   33333467777778888888775443322 


Q ss_pred             hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh-hhhhhHHHHHHHHHHHHHH----
Q 010291          166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK----  240 (513)
Q Consensus       166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~~~~~~~~~~~~~~~~~----  240 (513)
                         ...+..+..+|.+.++.++-.|+.+|.+++.++...+.... ..+..+++... +.+.      -.++++..+    
T Consensus       242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~-~~i~l~~kesdnnvkl------Ivldrl~~l~~~~  311 (948)
T KOG1058|consen  242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAAS-TYIDLLVKESDNNVKL------IVLDRLSELKALH  311 (948)
T ss_pred             ---hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHH-HHHHHHHhccCcchhh------hhHHHHHHHhhhh
Confidence               23466788888888888888888888888776654332221 11111111000 0000      011122222    


Q ss_pred             --hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC
Q 010291          241 --IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  274 (513)
Q Consensus       241 --~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  274 (513)
                        +-.+.+-.++.+|.+++-+++..++.....|+.+
T Consensus       312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence              2344566677788888899999998887777654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.61  E-value=0.0045  Score=48.07  Aligned_cols=72  Identities=28%  Similarity=0.314  Sum_probs=62.2

Q ss_pred             CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 010291           45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  116 (513)
Q Consensus        45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  116 (513)
                      .++..|+.+|. +.++.+...|+.=|+.++...|..|..+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            35788999995 5688899999999999999999999999889999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.57  E-value=0.069  Score=53.56  Aligned_cols=123  Identities=20%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG   94 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   94 (513)
                      ++..++.-|+..|......-|+..+.     ++..++.++++++..||..|++.|..+|.++++....+     ...|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence            46778888888888888877776655     47789999999999999999999999999877665554     678999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---CCCHHHHHHHHHHHHH
Q 010291           95 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGR  155 (513)
Q Consensus        95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~~  155 (513)
                      +|.++++.....+-.+|..+...++.        +.+..+.+.+.   +.++.+|+.++..|..
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            99998887777777888888765554        34555665554   5677889888877754

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.093  Score=53.19  Aligned_cols=130  Identities=20%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhcccCcchHHHHHhh
Q 010291          132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRV  210 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  210 (513)
                      +.+-+++.+.||-+|...+.++.- +.....+     .+++..|+.. .++.++++++.|..+|+-++..+..       
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~al-Ay~GTgn-----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLAL-AYVGTGN-----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHH-HHhccCc-----hhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence            334456667788888877766543 2222211     2445566666 5677899999999999988763322       


Q ss_pred             cCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHH
Q 010291          211 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL  289 (513)
Q Consensus       211 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~  289 (513)
                                                        .++..+++|.. -++.||..++.+|+-.|.+...+.      ++..
T Consensus       589 ----------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~l  628 (929)
T KOG2062|consen  589 ----------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINL  628 (929)
T ss_pred             ----------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHH
Confidence                                              35566677765 689999999999999887655442      4666


Q ss_pred             HHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          290 LLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       290 L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      |-.+..++..-||+.|+.++.-+.-
T Consensus       629 Lepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  629 LEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             HhhhhcChHHHHHHHHHHHHHHHHH
Confidence            7777778888899988888777653

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.14  Score=52.37  Aligned_cols=65  Identities=17%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          245 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       245 ~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                      .+..+.....=.+..+|.+|..+|.++.....    .........|.+.+.+.+.++|..|...|..+-
T Consensus       467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            34444444444567788999999999873322    122335566778888999999999988888876

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.48  E-value=0.18  Score=44.78  Aligned_cols=194  Identities=19%  Similarity=0.207  Sum_probs=115.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      +..+-....+++...+...+.+|+...           ....++.|+..+.+.  .+-+|..|+.+|+++.  .+     
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~-----   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP-----   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch-----
Confidence            333334433333344445555555543           235788898888764  5778889999999985  23     


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh-----hH--------hcCChHHHHHHhcCCC-HHH-HHH
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-----IA--------HNGGLVPLLKLLDSKN-GSL-QHN  189 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~--------~~~~i~~L~~ll~~~~-~~~-~~~  189 (513)
                          ...+.+-+..+++...+++.+..++..+-..+.....     ..        ..+.+..+-..+.+.+ +.. +..
T Consensus       100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~  175 (289)
T KOG0567|consen  100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR  175 (289)
T ss_pred             ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence                2456677777777888888888888777533222110     00        0011111221111111 111 112


Q ss_pred             HHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHh
Q 010291          190 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA  269 (513)
Q Consensus       190 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~  269 (513)
                      |...|.|+-                                           ....+..+..-+...+.-.|..++.+++
T Consensus       176 amF~LRn~g-------------------------------------------~EeaI~al~~~l~~~SalfrhEvAfVfG  212 (289)
T KOG0567|consen  176 AMFYLRNIG-------------------------------------------TEEAINALIDGLADDSALFRHEVAFVFG  212 (289)
T ss_pred             hhhHhhccC-------------------------------------------cHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            222222221                                           1224555666666677888999999998


Q ss_pred             hccCCCCcceeeecCCchHHHHhhhcC--CCcchhhhHHHHHHHhhhc
Q 010291          270 HLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       270 ~l~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~  315 (513)
                      .|-+          .-.|+.|...|.+  .++.+|..|+.+|..++..
T Consensus       213 Ql~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e  250 (289)
T KOG0567|consen  213 QLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE  250 (289)
T ss_pred             hccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence            7743          3468889988865  7899999999999998754

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=96.48  E-value=0.0074  Score=51.38  Aligned_cols=90  Identities=19%  Similarity=0.271  Sum_probs=65.3

Q ss_pred             EEEEecCeeehhhHHHHhhc--CHHHHHhccCCC--CCCCCCceecCCCCHHHHHHHHHHHhcCccc-cCHHHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLAS--SDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLLRA  422 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~--s~~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll~~  422 (513)
                      |.+.++|+.|...+.-+.-+  -....+||.+.-  .+.+..--.+-|-++..|+.++.|+-.|.+. .+.-++.++++.
T Consensus        11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee   90 (302)
T KOG1665|consen   11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE   90 (302)
T ss_pred             heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence            55666777776555544443  346778887642  2222233344456999999999999999987 455678999999


Q ss_pred             HHHhcHHHHHHHHHH
Q 010291          423 ADQYLLEGLKRLCEY  437 (513)
Q Consensus       423 A~~~~~~~l~~~c~~  437 (513)
                      |+||++-+|+...+.
T Consensus        91 Arff~i~sL~~hle~  105 (302)
T KOG1665|consen   91 ARFFQILSLKDHLED  105 (302)
T ss_pred             hhHHhhHhHHhHHhh
Confidence            999999999998877

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.2  Score=55.13  Aligned_cols=179  Identities=16%  Similarity=0.122  Sum_probs=101.7

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~   82 (513)
                      ||.|.+.==+|++.+| .|...|++....++.....-.-..+.+-|+.-|.+....+|+.++-+|..|..+.+..  .+.
T Consensus      1000 IPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred             hHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            4555555456777777 5666666665433333222222346777777777888999999999999999875442  222


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHH---HHHHHHHhhcC--Cc--hhhHHHHhcCChHHHHH-HhCCCCHHHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DS--DCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALG  154 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~--~~--~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~  154 (513)
                      +-  ..+..+.+.+++-...+|+.   ++.+|..+|..  ++  .....-.-..++|.|+. -+-+.-++++..++.++.
T Consensus      1079 lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1079 LP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLM 1156 (1702)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHH
Confidence            21  34555566666555566644   55667776621  11  11111111123444431 112456789999999999


Q ss_pred             HHhhccccchhhHhcCChHHHHHHhcCCCHHH
Q 010291          155 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL  186 (513)
Q Consensus       155 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  186 (513)
                      .|+......-+-.-...++.|+.....-.+.+
T Consensus      1157 dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1157 DLAKSSGKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred             HHHHhchhhhcchhhHHHHHHHHHccccchHH
Confidence            99976654322222234555566555444443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.44  E-value=0.05  Score=56.83  Aligned_cols=297  Identities=18%  Similarity=0.122  Sum_probs=168.1

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +...+++....+.+..++.-...++.. +......+....+++.+-.+..+.+..++...+.....+.--.+.   .-.-
T Consensus       359 ~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti  435 (759)
T KOG0211|consen  359 PVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTI  435 (759)
T ss_pred             hHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCc
Confidence            334444444445555555444444432 223344455555566666666677777777776666555422221   0001


Q ss_pred             CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           86 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        86 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      ....+.++..+.+..++++.+..+.+..+-...+...........++.+..+-....-.++....+.+..++....  ..
T Consensus       436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~  513 (759)
T KOG0211|consen  436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VE  513 (759)
T ss_pred             cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hH
Confidence            2345666777788889999988887766654444434445555667777777666666777777777777775333  22


Q ss_pred             hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhhh-hhhhHHHHHHHHHHH-----
Q 010291          166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRL-----  237 (513)
Q Consensus       166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~-----  237 (513)
                      +.+...-+.+...+.+....++++|+..+..++.  +......    ..++.+...... ..........++..+     
T Consensus       514 ~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g  589 (759)
T KOG0211|consen  514 FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG  589 (759)
T ss_pred             HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence            3332223334445555556788888887777764  2111111    111111100000 000111111222222     


Q ss_pred             HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      +......+++.+..+..++.+.||.+++..|..+...-..  ...+....|.+..+..+++.+++..|..+...+..
T Consensus       590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL  664 (759)
T ss_pred             cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence            2234566888888888889999999999999887543221  12334456777777778888999888777666543

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=96.40  E-value=0.011  Score=55.69  Aligned_cols=87  Identities=25%  Similarity=0.316  Sum_probs=69.0

Q ss_pred             ccEEEEecCeeehhhHHHHhhcC--HHHHHhccCCCCCCCCCc--eecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 010291          346 SDVTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR  421 (513)
Q Consensus       346 ~Dv~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~  421 (513)
                      .-|.+.|||+.|...+.-|+-..  .||.+++++.+.-.....  |-+ |=+|+.|..+|+|+-||+++++.-....++.
T Consensus        11 ~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llh   89 (465)
T KOG2714|consen   11 DRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLH   89 (465)
T ss_pred             ceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence            34788899999998888877554  799999998775443332  444 4499999999999999999987666665555


Q ss_pred             -HHHHhcHHHHHH
Q 010291          422 -AADQYLLEGLKR  433 (513)
Q Consensus       422 -~A~~~~~~~l~~  433 (513)
                       -|.||++..|.+
T Consensus        90 dEA~fYGl~~llr  102 (465)
T KOG2714|consen   90 DEAMFYGLTPLLR  102 (465)
T ss_pred             hhhhhcCcHHHHH
Confidence             999999999876

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.40  E-value=0.45  Score=50.36  Aligned_cols=249  Identities=14%  Similarity=0.130  Sum_probs=142.6

Q ss_pred             CCChhHHHHhhcc-----CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc----CCC----HHHHHHHHHH
Q 010291            2 EGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SED----SAIHYEAVGV   68 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~v~~~a~~~   68 (513)
                      .|++..+++++.+     .........+..|..++. -+.+|+.+.+.|+++.|+..|.    .+.    +.+-+.-+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            5889999999865     234555566777777776 7999999999999999998775    333    5677777766


Q ss_pred             HHHhhcCChhHHHH----HHhCC--------ChHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChH
Q 010291           69 IGNLVHSSPNIKKE----VLAAG--------ALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  132 (513)
Q Consensus        69 L~~l~~~~~~~~~~----~~~~g--------~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  132 (513)
                      +..+..+.......    .....        -+..+++.+++    .++.+....+++|-.|+.++++..+.+++  ...
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            66665432211110    01111        25666666665    35788999999999999888887666554  122


Q ss_pred             HHHHHhC--CC-CHHHHHHHHHHHHHHhh----cc---ccchhhHhcCChHHHHHHhcCCC--------HH--------H
Q 010291          133 PLIEMLQ--SP-DVQLREMSAFALGRLAQ----DM---HNQAGIAHNGGLVPLLKLLDSKN--------GS--------L  186 (513)
Q Consensus       133 ~L~~~l~--~~-~~~~~~~a~~~L~~l~~----~~---~~~~~~~~~~~i~~L~~ll~~~~--------~~--------~  186 (513)
                      +.+++=+  .. .++- ...+.+++.++.    +.   .-|..+++.|.+...++++...-        ++        .
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            2222111  11 1111 122444444442    22   22667888899988887775321        22        2


Q ss_pred             HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 010291          187 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV  255 (513)
Q Consensus       187 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~  255 (513)
                      ...++..|.-||............+.++ +++...........-..+.+.++.+.+..-+...+.-++.
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~lR~  419 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNLRK  419 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence            3357788888888655444555566663 3332222222222222233334444444445555555544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.078  Score=51.24  Aligned_cols=257  Identities=16%  Similarity=0.071  Sum_probs=135.1

Q ss_pred             cCCHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh-hcCCChHHHHHHHHHHHHhhcCC
Q 010291           44 CNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATD  118 (513)
Q Consensus        44 ~g~i~~Lv~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~  118 (513)
                      .|....++..+    .+++..+|..|++.|++.+...+.-...... -.+..++.- .+..+.+|.-.+..+|..+... 
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-
Confidence            35555444433    3677889999999999999885543222222 234445444 4455688999999888887622 


Q ss_pred             chhhHHHHhcCCh---HHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHh--cCChHHHHHHhcCCCHHHHHHHH
Q 010291          119 SDCKVHIVQRGAV---RPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAH--NGGLVPLLKLLDSKNGSLQHNAA  191 (513)
Q Consensus       119 ~~~~~~~~~~~~i---~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~  191 (513)
                        ....-+..+.+   -.+..+..+.+++++..+...++.|+.-...  +..+.+  .+...+++-.++++++.+ ..|+
T Consensus       331 --~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~AC  407 (533)
T KOG2032|consen  331 --ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARAC  407 (533)
T ss_pred             --hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHH
Confidence              11122223333   3456677788999999999999999854443  333332  234455666667777776 4567


Q ss_pred             HHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--------hhcchhhh
Q 010291          192 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--------AEKGVQRR  263 (513)
Q Consensus       192 ~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~--------~~~~v~~~  263 (513)
                      +.....|...-.+.+..  +.++...+...      .....-.+.. -+.-....+.++.++.+        .-+.+|..
T Consensus       408 r~~~~~c~p~l~rke~~--~~~q~~ld~~~------~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~a  478 (533)
T KOG2032|consen  408 RSELRTCYPNLVRKELY--HLFQESLDTDM------ARFQAFYNQW-CIQLNHIHPDILMLLLTEDQHIFSSSWEQVREA  478 (533)
T ss_pred             HHHHHhcCchhHHHHHH--HHHhhhhHHhH------HHHHHHHHHH-HHHHhhhCHHHHHHHHHhchhheecchHHHHHH
Confidence            76666664222222211  11111111000      0000000000 00011122222222222        22345555


Q ss_pred             HHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          264 VALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       264 a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      +...-.+...+  +..+...-.......|..+..++-|+++..+..++..+..
T Consensus       479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            55544444322  1111111111234667777778999999999998877654

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.088  Score=53.46  Aligned_cols=287  Identities=18%  Similarity=0.185  Sum_probs=137.4

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHH-Hhhc-CCCHHHHHHHHHH------------
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLR-SEDSAIHYEAVGV------------   68 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~-~~~~~v~~~a~~~------------   68 (513)
                      ..+|.+...|.+..+-+|.+|.-++..+-...+    .++. . .|.|+ ..|. ..++..++.|...            
T Consensus       134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y  207 (948)
T KOG1058|consen  134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-D-APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY  207 (948)
T ss_pred             hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-C-hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH
Confidence            356778888999999999999999888876311    1111 0 12222 2222 3344444444333            


Q ss_pred             ----------------------HHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291           69 ----------------------IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  126 (513)
Q Consensus        69 ----------------------L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  126 (513)
                                            +...+..++..+.     ..+..+..+|.+.++.++..|+.+|.+++ .+|.....  
T Consensus       208 l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~--  279 (948)
T KOG1058|consen  208 LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA--  279 (948)
T ss_pred             HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH--
Confidence                                  3333322222211     13445555565566666666666666664 22322211  


Q ss_pred             hcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch--
Q 010291          127 QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN--  203 (513)
Q Consensus       127 ~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--  203 (513)
                         ....++.++.+ +|-.+......-|..+.   ...+.+. .|.+-.++..|.++|-+++..++.....|+.+...  
T Consensus       280 ---Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved  352 (948)
T KOG1058|consen  280 ---AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED  352 (948)
T ss_pred             ---HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH
Confidence               12233333322 22223322333333332   1111111 23444577888999999999999988888764422  


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC-CCCcce
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE---KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRT  279 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~  279 (513)
                      ...+++......--......+.-...+..++.....   -..+.+++.|+.++.+.++......+..+..... .|..| 
T Consensus       353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-  431 (948)
T KOG1058|consen  353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-  431 (948)
T ss_pred             HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-
Confidence            122222221111100000001111222222222211   1345678888888877665544444433333322 23233 


Q ss_pred             eeecCCchHHHHhhhcC-CCcchhhhHHHHHHHhhhc
Q 010291          280 IFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       280 ~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~  315 (513)
                          ...+..|+.-+.. .++.+-+.|+|.++..+..
T Consensus       432 ----~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~  464 (948)
T KOG1058|consen  432 ----ASIIEKLLETFPQIRSSKICRGALWILGEYCEG  464 (948)
T ss_pred             ----HHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence                2345555555543 5667777777877766644

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.25  E-value=0.15  Score=53.43  Aligned_cols=225  Identities=19%  Similarity=0.127  Sum_probs=147.7

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .+|.++..+++..+.++.+..+.+..+-.-++...........++.+..+-.+....++....+.+..++....   ..+
T Consensus       438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~  514 (759)
T KOG0211|consen  438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEF  514 (759)
T ss_pred             cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHH
Confidence            45667777888889999999887766655444555555566677777777776678888888888888875422   222


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      ...-.-+.+...+.+...+++..|+..+..++....   ........++.++....+++-..|...+.++..++.--  -
T Consensus       515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~--g  589 (759)
T KOG0211|consen  515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL--G  589 (759)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh--c
Confidence            222233334444555567889999888888873322   11122245667777776666667777777776655311  2


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (513)
                      ..+.....++.+..+..++.+.++-+++..+-.+...-..                                   ...+.
T Consensus       590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~-----------------------------------~~~~~  634 (759)
T KOG0211|consen  590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE-----------------------------------SVRDE  634 (759)
T ss_pred             cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----------------------------------HHHHH
Confidence            2344455677888998999999999999888766542111                                   12344


Q ss_pred             hhHHHHHHHHHHhhcchhhhHHHHHhhc
Q 010291          244 RVLNHLLYLMRVAEKGVQRRVALALAHL  271 (513)
Q Consensus       244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l  271 (513)
                      .+.+.+..+.++++.+++..|..+.+.+
T Consensus       635 ~v~pll~~L~~d~~~dvr~~a~~a~~~i  662 (759)
T KOG0211|consen  635 EVLPLLETLSSDQELDVRYRAILAFGSI  662 (759)
T ss_pred             HHHHHHHHhccCcccchhHHHHHHHHHH
Confidence            5666666777778888888888877655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.069  Score=54.05  Aligned_cols=157  Identities=22%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291            9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus         9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      -+++.+.+|-+|...+..+.---.+.       .+.++|..|++. ..+.|.+||+.|+.+|+-++...++.        
T Consensus       525 ~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--------  589 (929)
T KOG2062|consen  525 KELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--------  589 (929)
T ss_pred             HHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--------
Confidence            34455566666666655444222111       123456666666 44678888888888888888776653        


Q ss_pred             ChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291           88 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI  166 (513)
Q Consensus        88 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  166 (513)
                       ++..+.+|. +.++.||..++.+|+-.|.+... +.      ++..|-.+.+++..-||..|+-++.-+......+.--
T Consensus       590 -~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p  661 (929)
T KOG2062|consen  590 -LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP  661 (929)
T ss_pred             -chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence             444555554 56788888888888888865332 22      2344445555666678888877777766433222111


Q ss_pred             HhcCChHHHHHHhcCCCHHHHH
Q 010291          167 AHNGGLVPLLKLLDSKNGSLQH  188 (513)
Q Consensus       167 ~~~~~i~~L~~ll~~~~~~~~~  188 (513)
                      .-.+..+.+.+.+.+++.+...
T Consensus       662 kv~~frk~l~kvI~dKhEd~~a  683 (929)
T KOG2062|consen  662 KVNGFRKQLEKVINDKHEDGMA  683 (929)
T ss_pred             hHHHHHHHHHHHhhhhhhHHHH
Confidence            1123444567777766655433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.16  E-value=0.02  Score=49.31  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             CCChHHHHHHHHHHHHhhcCCchhhHHHH---------------hcCChHHHHHHhCC------CCHHHHHHHHHHHHHH
Q 010291           98 SCCSESQREAALLLGQFAATDSDCKVHIV---------------QRGAVRPLIEMLQS------PDVQLREMSAFALGRL  156 (513)
Q Consensus        98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---------------~~~~i~~L~~~l~~------~~~~~~~~a~~~L~~l  156 (513)
                      ++.......++..|.|++..+......+-               +...+..|+..+..      +...-..+.+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            44555667788899999876554432221               12356777777765      2334567889999999


Q ss_pred             hhccccchhhHhcC--C--hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291          157 AQDMHNQAGIAHNG--G--LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  209 (513)
Q Consensus       157 ~~~~~~~~~~~~~~--~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  209 (513)
                      +..++.|..+.+..  .  +..|+..+.+.+...+.-++++|.|+|.+.+....+..
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~  142 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS  142 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence            99999999988743  3  66788888888877888899999999998887766654

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.09  E-value=0.096  Score=47.09  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL   95 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   95 (513)
                      ......|++.|.-++--++..+..+.....+..++++|. ...+.++..++.+|..+..+++.+...+-+.+|+..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            345667889999888889999999999999999999995 5678999999999999999999999999999999999999


Q ss_pred             hcCC--ChHHHHHHHHHHHHhh
Q 010291           96 LSSC--CSESQREAALLLGQFA  115 (513)
Q Consensus        96 l~~~--~~~~~~~a~~~L~~l~  115 (513)
                      +++.  +.+++..++..|.-..
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHH
Confidence            9875  4677777777766554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.05  E-value=0.37  Score=46.73  Aligned_cols=162  Identities=12%  Similarity=0.154  Sum_probs=115.7

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC------C------------------C----------HHHHHHHHH
Q 010291           22 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------E------------------D----------SAIHYEAVG   67 (513)
Q Consensus        22 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~------~------------------~----------~~v~~~a~~   67 (513)
                      .|++.|-.+....+.....+.+.+|+..+++.|+.      +                  .          ..+.+.-++
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            45666666666556666677777777777766531      1                  0          112223334


Q ss_pred             HHHHhhc---CChhHHHHHHh-CCChHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-
Q 010291           68 VIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-  139 (513)
Q Consensus        68 ~L~~l~~---~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-  139 (513)
                      .+..+..   +....-+.+.+ ...+..|..++++.   .+.+-..|+.++..+....|.....+.+.|.++.+++.+. 
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~  162 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA  162 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence            4444444   22222233444 34555666666653   4688899999999999899998899999999999999988 


Q ss_pred             C---CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291          140 S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN  183 (513)
Q Consensus       140 ~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~  183 (513)
                      .   ++.++....-.++..+|-+..+.+.+.+.+.++.+++++.+++
T Consensus       163 ~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  163 KGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             cCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH
Confidence            4   4778888999999999999999999999999999999998754

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.05  E-value=0.53  Score=44.37  Aligned_cols=188  Identities=17%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhHHHH
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKE   82 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~   82 (513)
                      ..+..+.......|..++..+.++..... ....+.+  ...+..+.+.++.+..+-+..|+.+++-++..  .......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            44555666778999999999998886432 2222222  24577888888877666677787777777644  1222233


Q ss_pred             HHhCCChHHHHHhhcCCC--hHHHHHHHHHHHHhhc---CCchhhHHHHhcCChHH--HHHHhCC----------CCHHH
Q 010291           83 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFAA---TDSDCKVHIVQRGAVRP--LIEMLQS----------PDVQL  145 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~--L~~~l~~----------~~~~~  145 (513)
                      +++ ...+.|...+.+..  ...|..++.+|+-++.   .+++.....+  ..+..  .....+.          +++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            333 36778888887654  4566666666666653   2222222111  23332  2222222          23567


Q ss_pred             HHHHHHHHHHHhhccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291          146 REMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  198 (513)
Q Consensus       146 ~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  198 (513)
                      ...|+.+.+-|...-+.. ..-.-...++.|..+|.+++..++..|..+|+-|-
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            777777766666433331 11122456888999999999999999998887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.94  E-value=0.015  Score=33.45  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=25.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~   74 (513)
                      +|.+++++++++++||..|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.92  E-value=0.079  Score=45.72  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC----------------CChHHHHHhhcC------CChHHHHHHHHHHHH
Q 010291           56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------------GALQPVIGLLSS------CCSESQREAALLLGQ  113 (513)
Q Consensus        56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------------g~i~~L~~ll~~------~~~~~~~~a~~~L~~  113 (513)
                      +++......++.+|.|++...... ..+++.                ..+..|+..+..      +..+-..+.+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            344556777888999999864444 333322                245666666654      233455778899999


Q ss_pred             hhcCCchhhHHHHhc--CC--hHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291          114 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus       114 l~~~~~~~~~~~~~~--~~--i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      ++.. ++.|..+.+.  +.  +..|+.++.+.+..-|.-++.+|.|+|.+.+....+...
T Consensus        85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             hcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            9754 7778877753  34  778888888888888899999999999888877776663

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.92  E-value=0.67  Score=43.62  Aligned_cols=150  Identities=20%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhh
Q 010291           45 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCK  122 (513)
Q Consensus        45 g~i~~Lv-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~  122 (513)
                      +.+..++ +.+.+.++.+|+.|+.+|+-.+--+......     .++.+...+..++.+++..|+.++..+..... ...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            3454444 7778899999999999999999765543222     36667777777789999999999988873221 111


Q ss_pred             HH-------HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHH-hcC---CCHHHHHHHH
Q 010291          123 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDS---KNGSLQHNAA  191 (513)
Q Consensus       123 ~~-------~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-l~~---~~~~~~~~a~  191 (513)
                      ..       ......+..+.+.+.+.+++++..++..++.|.-......   ....+..|+-+ +..   ++..++..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            11       1123567788888888999999999999999875443322   12233333322 222   2344444444


Q ss_pred             HHHHhcccCcc
Q 010291          192 FALYGLADNED  202 (513)
Q Consensus       192 ~~L~~l~~~~~  202 (513)
                      ..+-..|....
T Consensus       178 ~Ffp~y~~s~~  188 (298)
T PF12719_consen  178 VFFPVYASSSP  188 (298)
T ss_pred             HHHHHHHcCCH
Confidence            45555665443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.92  E-value=0.15  Score=52.28  Aligned_cols=191  Identities=18%  Similarity=0.183  Sum_probs=129.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHH-HhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+...|+++.....+.-+..+..+|. .+......      ...+++++.+.+.. ....-...++.++.||+..++..
T Consensus       503 ~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~  576 (748)
T KOG4151|consen  503 PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESD  576 (748)
T ss_pred             ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhh
Confidence            366777777777667777777777666 22221111      12345555555542 22233456888999999988888


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      |+.+.+.-+++.+-.++..+++..++.++..+.||..+.--....+.+ ...++.....+...+......++.++..+..
T Consensus       577 r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~s  656 (748)
T KOG4151|consen  577 RQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITS  656 (748)
T ss_pred             HHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhh
Confidence            888888877887778888889999999999999998654433344444 4455555555555666677777777776665


Q ss_pred             ccccc-h-hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291          159 DMHNQ-A-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  198 (513)
Q Consensus       159 ~~~~~-~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  198 (513)
                      ...+. . ..........++.++.+.+..++...+..+.|+.
T Consensus       657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF  698 (748)
T ss_pred             cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence            55442 2 3333566777889999999999999888888844

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.89  E-value=0.13  Score=48.51  Aligned_cols=169  Identities=17%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             hhHHH-HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHH
Q 010291            5 IPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKE   82 (513)
Q Consensus         5 i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~   82 (513)
                      +..|+ ..++++++.+|..|+++|+-.+--+.+....     .++.+...+..++..++..|+.++.-+..-.. ..-+.
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            33444 5668889999999999999988754433322     26677777777799999999999988864221 11111


Q ss_pred             -------HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----CCHHHHHHHHH
Q 010291           83 -------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAF  151 (513)
Q Consensus        83 -------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~  151 (513)
                             ......+..+...+.+.+++++..++..++.|.-.+--.-    ...++..|+-.--+    ++..++.--..
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                   1123466778888888999999999999999874322111    12234444333322    35677777777


Q ss_pred             HHHHHhhccccchhhHhcCChHHHHHHhcCC
Q 010291          152 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  182 (513)
Q Consensus       152 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~  182 (513)
                      .+-..+......+..+....++.+..+....
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            7777776666555555566666666666543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.88  E-value=0.21  Score=44.92  Aligned_cols=99  Identities=16%  Similarity=0.085  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 010291           60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  138 (513)
Q Consensus        60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l  138 (513)
                      .....|++.|..++--.+..|..+.+...+..++.+++. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            356668899999998889999999999999999999954 5788999999999999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHHhh
Q 010291          139 QSP--DVQLREMSAFALGRLAQ  158 (513)
Q Consensus       139 ~~~--~~~~~~~a~~~L~~l~~  158 (513)
                      ++.  +.+++-.++..|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            975  66777777776666554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.25  Score=52.42  Aligned_cols=208  Identities=21%  Similarity=0.173  Sum_probs=120.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +++++.|.+.|++.+..++..|++.++.++...|   ..+.+ .++...++++.- +++..--.|+-+|..++...--.-
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            3566777888888999999999999999998655   22222 256666776652 234445578888888885321110


Q ss_pred             HHHHhCCChHHHHHhhc--------CCChHHHHHHHHHHHHhhcCCchhhHH-HHhcCChHHHHHHhCCCCHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPLIEMLQSPDVQLREMSAF  151 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~  151 (513)
                      ..+  ..+++.++.-+.        +....+|..|+.+.+.+++.....-.. +.+.=.-..|+..+-+++...|+.|..
T Consensus       416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            111  124555555543        234578999999999998665443111 111111122334445677778888888


Q ss_pred             HHHHHhhccccc----hh----------------------hHh-cCChHHHHHH-----hcCCCHHHHHHHHHHHHhccc
Q 010291          152 ALGRLAQDMHNQ----AG----------------------IAH-NGGLVPLLKL-----LDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       152 ~L~~l~~~~~~~----~~----------------------~~~-~~~i~~L~~l-----l~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ++........+.    ..                      +.+ .|...++++-     +.+=|..+++.++++|.+|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            887766432221    10                      111 1223333322     234468888999999998775


Q ss_pred             CcchHHHHHhhcCcccccc
Q 010291          200 NEDNVADFIRVGGVQKLQD  218 (513)
Q Consensus       200 ~~~~~~~~~~~g~i~~L~~  218 (513)
                      .   ..+....+.++++++
T Consensus       574 ~---~pk~~a~~~L~~lld  589 (1133)
T KOG1943|consen  574 T---EPKYLADYVLPPLLD  589 (1133)
T ss_pred             h---hHHhhcccchhhhhh
Confidence            2   223344455555554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.75  E-value=0.016  Score=33.29  Aligned_cols=28  Identities=36%  Similarity=0.475  Sum_probs=25.4

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhc
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAF   32 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   32 (513)
                      +|.++++++++++++|..|+.+|+.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999986

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.63  E-value=1.8  Score=43.07  Aligned_cols=101  Identities=20%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH  168 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  168 (513)
                      .|.|-..+.+.-.-+...++++++.++..+-.  ...+ ...+..|-.+|+++....|-.|.++|..|+...+.+-....
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            45555566665567777888888777643311  1111 13566788888899999999999999999976655433222


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291          169 NGGLVPLLKLLDSKNGSLQHNAAFALYG  196 (513)
Q Consensus       169 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~  196 (513)
                          +.+-.++.+.+..+...|+..|..
T Consensus       343 ----~evEsLIsd~Nr~IstyAITtLLK  366 (898)
T COG5240         343 ----KEVESLISDENRTISTYAITTLLK  366 (898)
T ss_pred             ----hhHHHHhhcccccchHHHHHHHHH
Confidence                234556666666666666555543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.47  E-value=0.87  Score=42.94  Aligned_cols=192  Identities=20%  Similarity=0.107  Sum_probs=109.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--CCChHHHHHhhcCCChHHHHHHHHHHHHhhcC--Cchhh
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREAALLLGQFAAT--DSDCK  122 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~  122 (513)
                      +...+..+.+.....|+.++..+.++...... .+.+..  ...+..+.+.++.+..+-+..|+.++.-++..  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            34455555667788999999999888754322 122221  13566777777777666666676666666533  22223


Q ss_pred             HHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcccc-chhhH-hcCChHHHHHH--hc----------CCCHHH
Q 010291          123 VHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHN-QAGIA-HNGGLVPLLKL--LD----------SKNGSL  186 (513)
Q Consensus       123 ~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~i~~L~~l--l~----------~~~~~~  186 (513)
                      ..+.+ ...|.|.+.+.++  .+.++..++.+|+-++..... -..+. ....+..++..  ..          .+++.+
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            33333 5677888888765  456767777777776642211 11111 00112211111  11          112456


Q ss_pred             HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHH
Q 010291          187 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL  266 (513)
Q Consensus       187 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~  266 (513)
                      ...|+.+.+-|...-+.. .                              +. ..-...++.|..+|.+++.+||.+|-.
T Consensus       203 ~~aAL~aW~lLlt~~~~~-~------------------------------~~-~~~~~~~~~l~~lL~s~d~~VRiAAGE  250 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDS-K------------------------------LE-DLLEEALPALSELLDSDDVDVRIAAGE  250 (309)
T ss_pred             HHHHHHHHHHHHhcCCHH-H------------------------------HH-HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            677776666655322110 0                              00 011335889999999999999999999


Q ss_pred             HHhhcc
Q 010291          267 ALAHLC  272 (513)
Q Consensus       267 aL~~l~  272 (513)
                      +|+-|.
T Consensus       251 aiAll~  256 (309)
T PF05004_consen  251 AIALLY  256 (309)
T ss_pred             HHHHHH
Confidence            998774

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.22  Score=49.13  Aligned_cols=155  Identities=17%  Similarity=0.135  Sum_probs=99.2

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291            9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus         9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      -+++.+.++-.|.+.+..++.--.+.       -+.|++..+++. ..+.|.+||+.|+.+|+-+|.+...         
T Consensus       522 ~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         522 NELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            34555566666666665554332211       134667777776 5678899999999999998876544         


Q ss_pred             ChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291           88 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI  166 (513)
Q Consensus        88 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  166 (513)
                      .+...+++|. +.++.+|...+.+|+-.|.+.....       ++..|-.++.++..-+|+.|+-++..+......+-.-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp  658 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP  658 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence            3555566665 4678999999999998886644321       3455666677788889999988888877433332211


Q ss_pred             HhcCChHHHHHHhcCCCHHH
Q 010291          167 AHNGGLVPLLKLLDSKNGSL  186 (513)
Q Consensus       167 ~~~~~i~~L~~ll~~~~~~~  186 (513)
                      --.+.+..+.+++.+++.+.
T Consensus       659 ~v~~I~k~f~~vI~~Khe~g  678 (926)
T COG5116         659 NVKRIIKKFNRVIVDKHESG  678 (926)
T ss_pred             hHHHHHHHHHHHHhhhhHhH
Confidence            12344556666766655443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.29  E-value=0.12  Score=43.19  Aligned_cols=145  Identities=19%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           47 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        47 i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      +..++..|.  ...+++|..+.-++..+-   +..++...+ -.-..+-..+...+.+-...+..++..+.-..++....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            445555554  467889999999998884   333333221 23334444555555556677888888887676665555


Q ss_pred             HH-hcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc-CCCHH-HHHHHHHHHHh
Q 010291          125 IV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYG  196 (513)
Q Consensus       125 ~~-~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~a~~~L~~  196 (513)
                      +. ..|+++.++.++.  .++..++..++.+|..=|.+...|. .+...+++.|-+++. ++++. ++..|+-.|..
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            54 6889999999998  6788888898988888665554454 445577888999985 44455 67777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.28  E-value=0.2  Score=52.26  Aligned_cols=189  Identities=12%  Similarity=0.072  Sum_probs=123.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH--------HHH----hCCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--------EVL----AAGALQPVIGLLSSCCSESQREAALLLGQF  114 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  114 (513)
                      ...++.+|++  +++-..+..++.-+..+++..+.        .+.    -..++|.+++.+.+.+...+..-..+|.+.
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV  894 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV  894 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence            4456666653  45555666666666666554321        111    135788888888877777787778888888


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC---HHHHHHHH
Q 010291          115 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAA  191 (513)
Q Consensus       115 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~  191 (513)
                      ...-|...-.---...+|.|++.|.-+|..++..+..++.-+....+.-..-.-...++.++.+-.+.+   ..++..|+
T Consensus       895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~AL  974 (1030)
T KOG1967|consen  895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDAL  974 (1030)
T ss_pred             HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            765454221112245678888999999999999999999887754433221112234555666655555   56888999


Q ss_pred             HHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhh
Q 010291          192 FALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH  270 (513)
Q Consensus       192 ~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~  270 (513)
                      .+|..|.+ -+...-.                                 -+...++..|...|.++..-||+.|..+=.+
T Consensus       975 qcL~aL~~~~P~~~l~---------------------------------~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  975 QCLNALTRRLPTKSLL---------------------------------SFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHhccCCCcccc---------------------------------cccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            99999987 4432111                                 1244578888888988888899988876443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.23  E-value=0.19  Score=50.50  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=86.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhc
Q 010291           49 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR  128 (513)
Q Consensus        49 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  128 (513)
                      .++..-+ ++...+..|+..+.....+.|+..+.     ++..++.+.++++..+|..|...|-.+|.++++....+   
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---   97 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---   97 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence            3344434 57889999999999999998987665     57889999999999999999999999998877766654   


Q ss_pred             CChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc---CCCHHHHHHHHHHHH
Q 010291          129 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALY  195 (513)
Q Consensus       129 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~  195 (513)
                        ...|+++|.++++.-...+-.+|..+...++.       +.+..+..-+.   .+++.+++.++..|.
T Consensus        98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             --HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence              45899999999887777777777777642221       23334444443   456778888877664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=2.3  Score=45.16  Aligned_cols=134  Identities=16%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             CChhHHHHhhc------c--CCHHHHHHHHHHHHHhhcc---CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010291            3 GGIPPLVELLE------F--TDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN   71 (513)
Q Consensus         3 g~i~~Lv~lL~------~--~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~   71 (513)
                      |.++.+++.|.      .  .++.-+..|++.++++++-   ....+.. .+.=.++.+.+.++++-..+|..|+|.++.
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            45666677775      2  3467788888888888741   1222222 222245666677788888999999999999


Q ss_pred             hhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhC
Q 010291           72 LVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQ  139 (513)
Q Consensus        72 l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~  139 (513)
                      ++.-.-.....  -..++....+.+. +.+-.|+..|+.+|..+.+..+.....+..  .+.++.|+++.+
T Consensus       489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n  557 (1010)
T KOG1991|consen  489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN  557 (1010)
T ss_pred             HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence            98321111111  1234555666666 677889999999999998776654332221  344555555554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.17  E-value=0.17  Score=51.96  Aligned_cols=139  Identities=17%  Similarity=0.121  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh-CCChHHHHHhhc
Q 010291           19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS   97 (513)
Q Consensus        19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~   97 (513)
                      ...+++.++.|++..+...+..+.+..+++.+-.++-..++..+..++.++.||....--....+++ ...++.....+.
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e  637 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE  637 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence            4567889999999888888888988888888777888889999999999999999875555555655 457777777777


Q ss_pred             CCChHHHHHHHHHHHHhhcCCchhhH-HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           98 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        98 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ..+......++.++..++.....+.. ..........+..++.+++++++........|+.
T Consensus       638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF  698 (748)
T ss_pred             hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence            77777778888887767666555544 3334567788889999999999999888888855

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.13  E-value=0.39  Score=47.25  Aligned_cols=152  Identities=13%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ..+.+.+.+++...+..|...|..++. ++.....++...++..|.+++.+++    .++....++++..+-...- ...
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW  163 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW  163 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence            467788899999999999999999998 7888889999999999999998654    3566666666655543211 111


Q ss_pred             HHHhCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ..+...++.....+.+  ..+..+...|+..|.++..+++..++.+.+.--+..|+..++..+..++..|...+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            1222233444444443  24566778899999999988887888888888899999999999999998888888887743

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.85  Score=47.47  Aligned_cols=181  Identities=18%  Similarity=0.138  Sum_probs=118.8

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      .+..+.++.+.++-.|+..|+.+.+ +.+....+...+++...+..|++.++-+-..|+..+..||.--+        ..
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence            3445566778899999999999998 44666777788999999999999999999999998877774322        34


Q ss_pred             ChHHHHHh-hcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           88 ALQPVIGL-LSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        88 ~i~~L~~l-l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      +++.+... .+..   .++.+-....++.++...-.+...... ...+..+++..++++...|..++..++++|.--..+
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            67777763 3321   123333344555555532222111111 145677888888888888999999999998533221


Q ss_pred             --hhhHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhcccC
Q 010291          164 --AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       164 --~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~  200 (513)
                        ..+.  ..+..++.+.. +++..+++.|+..+..+-.+
T Consensus       882 vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  882 VSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             hhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence              1121  12333444444 34577888888888877653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.98  E-value=0.091  Score=48.74  Aligned_cols=88  Identities=24%  Similarity=0.257  Sum_probs=63.9

Q ss_pred             cccEEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 010291          345 LSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA  423 (513)
Q Consensus       345 ~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A  423 (513)
                      ..|+.|.. .|..|.+||..++++|.+|..-+..-+.  ...+|.-..+-++.|..|++|+|-..-.+..+.-.+++.+.
T Consensus       149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~  226 (516)
T KOG0511|consen  149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIE  226 (516)
T ss_pred             ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence            45788776 4677889999999999988654432221  23455555677899999999999874444445557888888


Q ss_pred             HHhcHHHHHHH
Q 010291          424 DQYLLEGLKRL  434 (513)
Q Consensus       424 ~~~~~~~l~~~  434 (513)
                      .+|+++.+...
T Consensus       227 ~kF~~e~l~~~  237 (516)
T KOG0511|consen  227 VKFSKEKLSLE  237 (516)
T ss_pred             hhccHHHhHHH
Confidence            88888776654

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.96  E-value=2.6  Score=40.95  Aligned_cols=109  Identities=9%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      .+.+-..|+..+..+..+.|.....+.+.|.++.+++.+. .   ++.++....-.+|+.||-+ ....+.+.+.+.++.
T Consensus       122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~  200 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDK  200 (379)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHH
Confidence            3678888999999999988899999999999999998887 3   4677888888899999987 555688888999999


Q ss_pred             HHHhhcCCCh-------HHHHHHHHHHHHhhcCCchhhHHH
Q 010291           92 VIGLLSSCCS-------ESQREAALLLGQFAATDSDCKVHI  125 (513)
Q Consensus        92 L~~ll~~~~~-------~~~~~a~~~L~~l~~~~~~~~~~~  125 (513)
                      +.+++.+.+.       +........+-.|.++.|..+..+
T Consensus       201 ~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i  241 (379)
T PF06025_consen  201 LFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI  241 (379)
T ss_pred             HHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence            9998875321       233334445556666666555443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=94.78  E-value=2.3  Score=40.55  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhcCCchhhHH-HHhcCCh
Q 010291           58 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVH-IVQRGAV  131 (513)
Q Consensus        58 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i  131 (513)
                      +..+...++.||+|+..+++..++...+......+++.+...     ..++...-.+.|.-++.-.+..+.. +.+.+++
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL  189 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            457899999999999999999999999988777777766431     1233333344444444333444443 3456777


Q ss_pred             HHHHHHhCC
Q 010291          132 RPLIEMLQS  140 (513)
Q Consensus       132 ~~L~~~l~~  140 (513)
                      +.+-+.+.+
T Consensus       190 ~~lt~~led  198 (532)
T KOG4464|consen  190 ELLTNWLED  198 (532)
T ss_pred             HHHHHHhhc
Confidence            777777753

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.76  E-value=0.55  Score=47.74  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      |.+..+++-..+++..+|.+.+..|..+.. +......-+-.+....+..-+.+..+.||.+|+.+|+.+-.+..+-   
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence            445566666778899999999999999987 3333444444556777777778889999999999999997432110   


Q ss_pred             HHhCCChHHHHHhhcC-CChHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSS-CCSESQREAALLL  111 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L  111 (513)
                        +..++..+..++.. ++++||+.++..+
T Consensus       161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             --cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence              13466777777764 6788998765433

>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=94.69  E-value=0.067  Score=43.42  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             ccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 010291          346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR  421 (513)
Q Consensus       346 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~  421 (513)
                      .=|.+.|||..|..-|.-|...+.-|-.-|-..-+    .+++.--.+-|=+|..|..+|+|+-.|++-++.-.=..+++
T Consensus        21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~  100 (210)
T KOG2715|consen   21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE  100 (210)
T ss_pred             EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence            34778899999999999999888566555533221    22222334445689999999999999999887755567999


Q ss_pred             HHHHhcHHHHHHHHHHHHHhcC
Q 010291          422 AADQYLLEGLKRLCEYTIAQDI  443 (513)
Q Consensus       422 ~A~~~~~~~l~~~c~~~l~~~~  443 (513)
                      -|++|.++.|.++..+.+.+..
T Consensus       101 EAefyn~~~li~likd~i~dRd  122 (210)
T KOG2715|consen  101 EAEFYNDPSLIQLIKDRIQDRD  122 (210)
T ss_pred             hhhccCChHHHHHHHHHHHHHh
Confidence            9999999999999888887753

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=94.66  E-value=0.69  Score=44.71  Aligned_cols=143  Identities=13%  Similarity=0.140  Sum_probs=92.6

Q ss_pred             hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHH-HHHHHhhcCChhHH
Q 010291            5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAV-GVIGNLVHSSPNIK   80 (513)
Q Consensus         5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~-~~L~~l~~~~~~~~   80 (513)
                      +..+++.|.. .++..+..|++.|+.++...+.   .+.+  +-+|..+++.-++.++++...|. .++.-++...+..+
T Consensus       331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~  407 (516)
T KOG2956|consen  331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC  407 (516)
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH
Confidence            3456667765 6788999999999999984332   2222  12455566666655555555444 45666666555432


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                              |..+..++-+.|......++..+..++..-+.......-..+.|.+++...+....+|+.|+.+|..+..
T Consensus       408 --------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 --------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             --------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence                    3344555555666666667777777774433222222335788999999999999999999999998863

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.63  E-value=2.2  Score=41.50  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=96.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChh---HHHHHHhCCChHHHHHhhcCC-------ChHHHHHHHHHHHHhhcCCc
Q 010291           50 LILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDS  119 (513)
Q Consensus        50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~  119 (513)
                      +..+++..+.+-|-.|+....+++.+.+-   +++.+++.-|.+.+-+++.+.       +.-.+.-+...|...|+..+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            55666677778888899899999876442   466788888888888888752       22335667778888886533


Q ss_pred             hh-hHHHHhcCChHHHHHHhCCC-CHH------HHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291          120 DC-KVHIVQRGAVRPLIEMLQSP-DVQ------LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN  183 (513)
Q Consensus       120 ~~-~~~~~~~~~i~~L~~~l~~~-~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~  183 (513)
                      -. ...++  ..||.|...+... |++      +.+.+..+|..++..+.+...++..|+++.+.++-.-++
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence            11 12233  3688888888753 333      778999999999999899999999999999987765444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.58  E-value=0.3  Score=42.33  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhh-cCChhHHHHHHhCCChHHHHHhhcC---------CChHHHHHHHHHHHHhhc
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLV-HSSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFAA  116 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~  116 (513)
                      ...+++.+.+.....  ..+..|.-.. ..+....+.+++.||+..|+.+|..         .+.+....++.+|..+..
T Consensus        68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            445667776443322  2222222222 2334567788889999999998863         345788889999999986


Q ss_pred             CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291          117 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus       117 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ...+....+...+.+..++..+.+++..++..++..|..+|
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            55444444556889999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.55  E-value=1.6  Score=40.09  Aligned_cols=206  Identities=13%  Similarity=0.119  Sum_probs=143.2

Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH----HH-hcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH----IV-QRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      +.+.+.|.+..++..+..-+.+.+..++.+..|+-..+-+.+..    +. ....+..|+.--.. .+++.-.+...+..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence            45667899999999999999999999999998887544333322    21 23344555544221 47777777788888


Q ss_pred             HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291          156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  234 (513)
Q Consensus       156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  234 (513)
                      ..+...-.+.+..+..+.....++..++-++...|..+...+.. +.....++....                       
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n-----------------------  208 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN-----------------------  208 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC-----------------------
Confidence            77777777788888888888888888888888888887776654 333333332211                       


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcc----eeeecCCchHHHHhhhcCCCcchhhhHHHHHH
Q 010291          235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  310 (513)
Q Consensus       235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  310 (513)
                            ++.-+.+.--.++++.+.-.+..+...++.+-.+..+.    +.+.+...+..+..+|++++..+|.+|-....
T Consensus       209 ------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK  282 (342)
T KOG1566|consen  209 ------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK  282 (342)
T ss_pred             ------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence                  11112222445777888889999999999987654432    34444466788999999999999999988777


Q ss_pred             Hhhhcc
Q 010291          311 KLANKA  316 (513)
Q Consensus       311 ~l~~~~  316 (513)
                      -+..++
T Consensus       283 vfvAnp  288 (342)
T KOG1566|consen  283 VFVANP  288 (342)
T ss_pred             HHhcCC
Confidence            766553

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.45  E-value=0.37  Score=51.76  Aligned_cols=140  Identities=17%  Similarity=0.177  Sum_probs=108.9

Q ss_pred             CHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCch
Q 010291           46 ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD  120 (513)
Q Consensus        46 ~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~  120 (513)
                      ..|.++...+    .++|+++..|.-+|+.+.--+.+.+..     .++.|...++ ++++.+|.+++.+++-++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4556666664    367999999999999997654443332     5788999998 68899999999999999877665


Q ss_pred             hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ..+     .+-+.|...+.++++.+|+.|..+|.+|-.++    .+.-.|-+..+..++.++++.+..-|=.....|+.
T Consensus       995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            433     35567888999999999999999999997643    23345888899999999999988877766666664

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.44  E-value=3.8  Score=39.73  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHH-HHHHHHHhhcCChhHHH
Q 010291            5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYE-AVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~-a~~~L~~l~~~~~~~~~   81 (513)
                      +..+++-+++ ....+|..++-.|..-+. ++..+..+...|.++.++..+.+ ++..+... ++.++.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            3445555553 346788888888888887 89999999999999999999963 33323333 3444444554432 223


Q ss_pred             HHHhCCChHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLLS   97 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~   97 (513)
                      .+.+.+....++.++.
T Consensus       101 l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhhchhHHHHHHHHhc
Confidence            3334455666677776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=94.41  E-value=0.17  Score=52.72  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      .++|.+++..+......+.+=+.+|.+...+-|.  ..+..  ....|.|++.|.-++..+|..+..++.-+....+...
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            4577888887766666777777888887765444  22221  2457788888888999999999999988876655543


Q ss_pred             HHHHhCCChHHHHHhhcCCC---hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      ..-+ ...++.++.+-.+.+   ..+|..|..+|..|.+.-|...-.-....++..|.+.|.++..-+|+.|..+=.
T Consensus       945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            2221 235666666655554   578999999999999866665555566778999999999988889988876533

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.38  E-value=0.35  Score=40.48  Aligned_cols=147  Identities=21%  Similarity=0.300  Sum_probs=97.5

Q ss_pred             CChhHHHHhhcc--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      ..+..++..|..  ..+++|..+.-++..+-   +..+....+ -+-+.+-.++..++.+-...++.++..+-...++..
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            345667776654  56789999999998884   223333222 223344445554455567778888888887777765


Q ss_pred             HHHH-hCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHH-HHHHHHHHHHH
Q 010291           81 KEVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-LREMSAFALGR  155 (513)
Q Consensus        81 ~~~~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~-~~~~a~~~L~~  155 (513)
                      ..++ ..|..+.++.+..  ..+..++..++.+|..-| .+...+ ..+...+++.|-...+. ++.. ++..|+-+|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            5555 5688888888888  677888888888888776 435544 44555789999999964 4555 67777666543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.37  E-value=1.4  Score=46.92  Aligned_cols=185  Identities=11%  Similarity=0.065  Sum_probs=125.3

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +.+-..+.++++..|.+|+..+...... +.........|.+..++.... +.|..+...|+.+|..++...... ..-.
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEE-AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhc-cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence            3445556778999999999999988873 331111122233444444333 678889999999999998654443 2223


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc-
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-  163 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-  163 (513)
                      ..++.+.++..+......++..+..++...+...+.       ....+.++..+++.+|..+..+...+.......... 
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            356788888888888888887777777666542221       235678889999999999988777776665443321 


Q ss_pred             -hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          164 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       164 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                       ..-.-.+.++.++....+.+..++.+|..+++.+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             111112456667788888889999999999887765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.34  E-value=0.34  Score=48.07  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH-------------HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI-------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ  113 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  113 (513)
                      +..|+++|.+  +++...++..++-+..+.+..             |+.++. ..+|.|++..+..+.+.+.....+|.+
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            5566666654  778889999999998874432             222221 356777777777777788888899999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291          114 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus       114 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      +..+-|...-.-.-...+|.+++.|..+|.+++..+..+|..+..+.
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            98776654333333568899999999999999999999999998755

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.26  E-value=0.33  Score=34.28  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG   87 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   87 (513)
                      .+.|++++++++. ++.....+.+.++++.++++.. ++...+|-.|..+|+-++.. .+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            5689999999997 5666666667899999999998 67789999999999999866 55556555544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.23  E-value=0.58  Score=50.38  Aligned_cols=218  Identities=14%  Similarity=0.118  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 010291           56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  133 (513)
Q Consensus        56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  133 (513)
                      +.+..+|..+-+.|..++.. +.......+.  .+...|..-+++.....+...+.+|..+....+..-..++.. .++.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHH
Confidence            44788999999999999876 3332221111  233444445555566677777778877775545222233333 3444


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcC------ChHHHHHHhcCC----CHHHHHHHHHHHHhcccCcch
Q 010291          134 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG------GLVPLLKLLDSK----NGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       134 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      ++-.+++.+...++++..+|..++..    ....+.|      .+...+..+..+    .......-+-++..+..+   
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---  815 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAI----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---  815 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHH----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---
Confidence            44444888999999999999999840    0111111      233333333322    111111112222222211   


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcc
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH----GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQR  278 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~  278 (513)
                                                       .....+    .+++..+..+|.+..++++..|++.+.-++.. ++..
T Consensus       816 ---------------------------------~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~  862 (1176)
T KOG1248|consen  816 ---------------------------------FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC  862 (1176)
T ss_pred             ---------------------------------HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence                                             111112    23455566677778999999999999988764 4333


Q ss_pred             eeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          279 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       279 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      ..-.....++.+..+.++..-.++.++-..+..|.+.
T Consensus       863 l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  863 LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            2222334678888888877778887777777777654

>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]

Probab=94.22  E-value=0.041  Score=51.12  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=111.9

Q ss_pred             ccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccC--HHHHHHHHHHH
Q 010291          346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA  423 (513)
Q Consensus       346 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~ll~~A  423 (513)
                      .+.++......+++|+.++...|+.|..+....-..+....+..-..+...+..+..++|.+ .+-.  ......++.+.
T Consensus        27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~  105 (319)
T KOG1778|consen   27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS  105 (319)
T ss_pred             chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence            34455556678999999999999999988865522233445667778889999999999988 3322  23456677777


Q ss_pred             HHhcHHHHHHHHHHHHHh-cCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhh
Q 010291          424 DQYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL  487 (513)
Q Consensus       424 ~~~~~~~l~~~c~~~l~~-~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l  487 (513)
                      ..|.++..+..|...+.. .++..++...+..+..|....|...+...+...|....+++.....
T Consensus       106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~  170 (319)
T KOG1778|consen  106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY  170 (319)
T ss_pred             hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence            899999999999888877 5788899999999999999999999999999999998886655443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.01  E-value=0.17  Score=51.18  Aligned_cols=183  Identities=16%  Similarity=0.179  Sum_probs=125.8

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.+|.|++++++.+..+|..-+..+-+...   .....+++..+.|.+..-+.+.++.+|+.++.++..|+.-   .-..
T Consensus       330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L~~~  403 (690)
T KOG1243|consen  330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---LSKR  403 (690)
T ss_pred             chhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---hchh
Confidence            578999999999999999877766666654   4556677788899999999999999999999998888742   1122


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      .+....+..+..+-.+++..++.+..-+|+.+........   .+.-...++...++++-+..|..+.++++......+.
T Consensus       404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~  480 (690)
T KOG1243|consen  404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ  480 (690)
T ss_pred             hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence            3333355666666666778889888888888875432222   2222345566677787777888888887776543333


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG  196 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  196 (513)
                      ...  ....++.+..+.-+++..++..|-.++..
T Consensus       481 ~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  481 SEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQ  512 (690)
T ss_pred             hhh--hhhccccccccccCcccchhhHHHHHHHH
Confidence            221  22456667777777777777766665553

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.95  E-value=9.6  Score=40.80  Aligned_cols=123  Identities=17%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             HHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc----CCC----hHHHHHH
Q 010291           41 IVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCC----SESQREA  107 (513)
Q Consensus        41 i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~a  107 (513)
                      +.+.|++..+++++.+     .........+..|...+.- +.+|+.+++.|+++.|+..+.    .+.    .++.+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3457899999998874     3345666677777777755 888999999999999998875    323    4666666


Q ss_pred             HHHHHHhhcCCchhhH----HHH--------hcCChHHHHHHhCCC----CHHHHHHHHHHHHHHhhccccch
Q 010291          108 ALLLGQFAATDSDCKV----HIV--------QRGAVRPLIEMLQSP----DVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus       108 ~~~L~~l~~~~~~~~~----~~~--------~~~~i~~L~~~l~~~----~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      ..++..+.........    ...        ....+..|++.+.++    ++.+....+++|-+|+.+.....
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            6666555422111000    000        122367777777754    68899999999999998776644

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.88  E-value=1.2  Score=44.22  Aligned_cols=185  Identities=20%  Similarity=0.200  Sum_probs=112.2

Q ss_pred             hHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhh----c-CChh
Q 010291            6 PPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV----H-SSPN   78 (513)
Q Consensus         6 ~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~l~----~-~~~~   78 (513)
                      ..++.+. +..++..+..+++.+..++..-+...  . -.+.+..+...+ ...++..+..++..+.-++    . +++.
T Consensus       192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~  268 (415)
T PF12460_consen  192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--D-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL  268 (415)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--h-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch
Confidence            3444443 34557888888888888875311111  1 112233333333 2334444555544443333    2 2221


Q ss_pred             HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh--------hHHHHhc----CChHHHHHHhCCCCHHHH
Q 010291           79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC--------KVHIVQR----GAVRPLIEMLQSPDVQLR  146 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------~~~~~~~----~~i~~L~~~l~~~~~~~~  146 (513)
                      .      ...+..|+.++.+  +++...++.++.-+..+.+..        ...+...    ..+|.|++..+..+...+
T Consensus       269 ~------~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k  340 (415)
T PF12460_consen  269 A------TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK  340 (415)
T ss_pred             H------HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence            1      1245667777766  777888888888887652321        2222222    346677777777776788


Q ss_pred             HHHHHHHHHHhhccccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          147 EMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       147 ~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      .+...+|.++..+-+..-..-+ ...+|.|++-|..++..++..++.+|..+..+.
T Consensus       341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            8899999999876654333333 345666888899999999999999999988755

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.76  E-value=2.1  Score=44.97  Aligned_cols=180  Identities=14%  Similarity=0.065  Sum_probs=118.5

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      .+..|....+|.+++...+.....+...+ . ......+..+. +..+-++..|+++++..++.  .. -.-...+++..
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~v-l~~~~p~ild~  534 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KV-LLSLQPMILDG  534 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--ee-ccccchHHHHH
Confidence            34567777788888887776322222211 1 12334444444 56677888888888877732  11 11123467788


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      |.++......++......+|+..+..+++... ..++.+.|..+.++.  ++||.+...+-.++..++....+...+ .+
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HH
Confidence            88888888899999999999999988887543 445567777777664  458888888888888887644444333 33


Q ss_pred             CChHHHHHHhcCCC----HHHHHHHHHHHHhccc
Q 010291          170 GGLVPLLKLLDSKN----GSLQHNAAFALYGLAD  199 (513)
Q Consensus       170 ~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~  199 (513)
                      ..++.++..+..+.    .....-++..|..+.+
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr  646 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR  646 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence            57888999988766    4555566666665555

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.72  E-value=4.3  Score=38.82  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=113.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHhC-C-ChHHHHHhhcCC-----C--------hHHHHHHHHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-G-ALQPVIGLLSSC-----C--------SESQREAALL  110 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~~  110 (513)
                      ++.+-+.|.+..+.+...+++.|..++. +.......+... + -.+.+..++...     .        +++|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7777788888888888899999999998 665555555543 3 334555565321     1        2788777665


Q ss_pred             HHH-hhcCCchhhHHHH-hcCChHHHHHHhCCCCHHHHHHHHHHHHH-Hhhcccc----chhhHhcCChHHHHHHhcCCC
Q 010291          111 LGQ-FAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHN----QAGIAHNGGLVPLLKLLDSKN  183 (513)
Q Consensus       111 L~~-l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~-l~~~~~~----~~~~~~~~~i~~L~~ll~~~~  183 (513)
                      +.. +...++..+..+. +.+.+..+.+-|..+++++....+.+|.. +..++..    +..+..+..+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            544 4455565665555 56678999999999999999999999985 4444322    344556677888888887777


Q ss_pred             H----HHHHHHHHHHHhcccCcchHHHH
Q 010291          184 G----SLQHNAAFALYGLADNEDNVADF  207 (513)
Q Consensus       184 ~----~~~~~a~~~L~~l~~~~~~~~~~  207 (513)
                      +    .+...+-..|..+|.++...-.+
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f  245 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHGVCF  245 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCccccc
Confidence            7    78888888999999877654333

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.65  E-value=0.66  Score=40.19  Aligned_cols=146  Identities=16%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhCCChHHHH
Q 010291           20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVI   93 (513)
Q Consensus        20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~   93 (513)
                      ..+|+..|.-+++ +|+.+..+.+..+--.+-+.|..     ....+|..+++.++.+..+. +..-..+....++|..+
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            4567777777777 79999988888754445556552     23578999999999998754 45556677788999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCchhhHHH------H-hcCChHHHHH-HhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291           94 GLLSSCCSESQREAALLLGQFAATDSDCKVHI------V-QRGAVRPLIE-MLQSPDVQLREMSAFALGRLAQDMHNQAG  165 (513)
Q Consensus        94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~-~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  165 (513)
                      ++++.+..-.+.-|+.++..+..++...+-..      . -...+..++. +.+.+...+.+++.++-..|+.++..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            99998888788888888888875544322111      1 0122333333 33445667888888888888877766654


Q ss_pred             h
Q 010291          166 I  166 (513)
Q Consensus       166 ~  166 (513)
                      +
T Consensus       276 L  276 (315)
T COG5209         276 L  276 (315)
T ss_pred             H
Confidence            4

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.65  E-value=3.2  Score=45.11  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ   90 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   90 (513)
                      ++.+..+|..+.+.|..++.. +.......+  ..+...+.+-+++.....+...+.+|..|....+..-..++..-+.+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            345788999999999999984 332222221  12233444555556677888888888888765442222222222333


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhc--C--Cc-hhhHHHHhcCChHHHHHHhCCC--CHHHHHHH--HHHHHHHhhccc
Q 010291           91 PVIGLLSSCCSESQREAALLLGQFAA--T--DS-DCKVHIVQRGAVRPLIEMLQSP--DVQLREMS--AFALGRLAQDMH  161 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~--~~-~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a--~~~L~~l~~~~~  161 (513)
                      .++.+ ...+...++.+-.+|..++.  .  ++ +.+    ....++.++..+..+  ....+..+  +-++..+..   
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---  814 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---  814 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---
Confidence            44444 77778888888888888872  0  00 001    112455566666543  22333222  333444332   


Q ss_pred             cchhhHhc----CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          162 NQAGIAHN----GGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       162 ~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ....+.+.    +.++.+..++.+.+++++..|+..+..++.
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~  856 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY  856 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            22222332    345556667788999999999999998875

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=1.2  Score=46.55  Aligned_cols=221  Identities=15%  Similarity=0.083  Sum_probs=132.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcC
Q 010291           50 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG  129 (513)
Q Consensus        50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  129 (513)
                      .+..+.++.+.++..++..|..+.... .-...+...+++...+..+++.++-+--.|...+..||..-++        .
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence            334445666778999999999999764 3346666778999999999999999999999988888855443        4


Q ss_pred             ChHHHHH-HhCCC---CHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch-
Q 010291          130 AVRPLIE-MLQSP---DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-  203 (513)
Q Consensus       130 ~i~~L~~-~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-  203 (513)
                      .+|.+.. ..++.   .++.+-..-.++.++...-.. -... ..-.+...+...++++...+..++..++++|.-... 
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            6667766 33322   123343444555555531111 0011 113344566777777777788899999998862211 


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcce-ee
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRT-IF  281 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~-~l  281 (513)
                      ...                                  +-..++..++.+.+. ++..+|.+|+..+..+-.+..... .+
T Consensus       882 vsd----------------------------------~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi  927 (982)
T KOG4653|consen  882 VSD----------------------------------FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI  927 (982)
T ss_pred             hhH----------------------------------HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence            000                                  011234444555554 567788999988888755422110 00


Q ss_pred             ---ecCCchHHHHhhhcC-CCcchhhhHHHHHHHhhh
Q 010291          282 ---IDGGGLELLLGLLGS-TNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       282 ---~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~  314 (513)
                         .--.....+...... +++.++..++.++..+-.
T Consensus       928 lr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  928 LRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence               011233344444443 555667777777666543

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=93.51  E-value=6  Score=36.52  Aligned_cols=200  Identities=14%  Similarity=0.142  Sum_probs=134.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCHHHHHHhhc-CC-CHHHHHHHHHHHHHhhcCCh
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-SE-DSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~-~~-~~~v~~~a~~~L~~l~~~~~   77 (513)
                      +|.+..+++.+...+-+.+..++.+..++-+..-+.+...++.  .-.+.+-.+++ .. .+++-..+-..|...... +
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirh-e  156 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRH-E  156 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhh-H
Confidence            5677888888888787888888888887765433333222211  11222333333 22 255555554455555444 6


Q ss_pred             hHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCC----hHHHHHHhCCCCHHHHHHHHHHH
Q 010291           78 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLREMSAFAL  153 (513)
Q Consensus        78 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~l~~~~~~~~~~a~~~L  153 (513)
                      ...+.+....-.......+..+..++...|..+...+..........+...+.    .+.--.++.+.+.-.+..+...|
T Consensus       157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll  236 (342)
T KOG1566|consen  157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL  236 (342)
T ss_pred             HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence            66677777778888888888888888888888887776443333333333222    23355677888888999999999


Q ss_pred             HHHhhccccchhhH----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc
Q 010291          154 GRLAQDMHNQAGIA----HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  202 (513)
Q Consensus       154 ~~l~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  202 (513)
                      +.+-.+..+...+.    ....+..++.+|++++..+|..|-....-...++.
T Consensus       237 g~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            99998887755443    34678889999999999999999999988877553

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.23  E-value=1.1  Score=45.74  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc
Q 010291          101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD  180 (513)
Q Consensus       101 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~  180 (513)
                      ..+...++..+..+-..+++.  .++ .|.+..++.-..+++..||..++..|.-+.........-+-.+....+..-+.
T Consensus        60 dRIl~fla~fv~sl~q~d~e~--DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEE--DLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchh--hHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh
Confidence            456666666666665443332  122 36677777777888999999999999999875555555555566777777788


Q ss_pred             CCCHHHHHHHHHHHHhcccCc
Q 010291          181 SKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       181 ~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      +..+.++..|+.+|..+-.++
T Consensus       137 Drep~VRiqAv~aLsrlQ~d~  157 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQGDP  157 (892)
T ss_pred             ccCchHHHHHHHHHHHHhcCC
Confidence            888999999999999998533

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.17  E-value=0.53  Score=40.82  Aligned_cols=106  Identities=17%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCC
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHSS   76 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~~l~~~~   76 (513)
                      .+++.+.+.....  ..+..|....+. +......+++.||+..|+++|..         .+......++.||..+... 
T Consensus        70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-  146 (187)
T PF06371_consen   70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-  146 (187)
T ss_dssp             HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-
T ss_pred             HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-
Confidence            3455554443221  333333333332 33567778889999999998862         3457888899999999865 


Q ss_pred             hhHHHHHH-hCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291           77 PNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFA  115 (513)
Q Consensus        77 ~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  115 (513)
                      ......++ ..+++..|+..+.+.+..++..++..|..+|
T Consensus       147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            44455555 4689999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.13  E-value=0.76  Score=35.63  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             ecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc--------------------
Q 010291          352 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV--------------------  411 (513)
Q Consensus       352 ~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~--------------------  411 (513)
                      .+|+.|.+.+.+ |.+|-..+.|+....  ...-.+..+++...+|..+++|+-...-..                    
T Consensus         9 ~dge~F~vd~~i-AerSiLikN~l~d~~--~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr   85 (158)
T COG5201           9 IDGEIFRVDENI-AERSILIKNMLCDST--ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR   85 (158)
T ss_pred             cCCcEEEehHHH-HHHHHHHHHHhcccc--ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence            367788887764 668999999885321  112346778999999999999997653321                    


Q ss_pred             -----CHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCC
Q 010291          412 -----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS  444 (513)
Q Consensus       412 -----~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~  444 (513)
                           ..+.+.++.-+|+|+.++.|...|.+.+.+.+.
T Consensus        86 ~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir  123 (158)
T COG5201          86 FFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR  123 (158)
T ss_pred             HHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence                 224567788888888888888888887766553

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=93.08  E-value=0.26  Score=35.53  Aligned_cols=50  Identities=32%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhcCc
Q 010291          411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHA  460 (513)
Q Consensus       411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~n~~~~~~~a~~~~~  460 (513)
                      ++.+.+.+++.+|++|++++|...|.+.+...+   +++....++.+...+..
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~   63 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP   63 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence            466789999999999999999999999887765   55556666655555443

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.00  E-value=0.4  Score=35.81  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      +...+..++++.+.+|-.++..|+++.....  .......+++..+...|+++++-+-..|+.+|..++...+.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3556777889999999999999999998544  22222345677888899999999999999999999976554

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=0.92  Score=44.18  Aligned_cols=138  Identities=17%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC---CC
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA---GA   88 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~   88 (513)
                      .+++..++..|++.|++.+.+-|+-....... .+..++.-|. ..+.+|+..++.+|..+...-..   .-+..   .+
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~l~i  343 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYLLNI  343 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhchhH
Confidence            45677899999999999999755544443333 3445554444 55789999999999888743221   11222   23


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHH--hcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIV--QRGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~--~~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      .-.+..+.++.+++.+..+...++.|+-... ..+..+.  -.+...+++-.+.+++|.+...+-..+.
T Consensus       344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~  412 (533)
T KOG2032|consen  344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR  412 (533)
T ss_pred             HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence            3445667788899999988887777762211 1122222  1233445666778888876654444333

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.93  E-value=6.8  Score=35.31  Aligned_cols=138  Identities=23%  Similarity=0.220  Sum_probs=90.7

Q ss_pred             hhHHHH-hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            5 IPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         5 i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ++.|+. +-+..++..+...+..|..++.++..+...     ++..+..+...+..+.+..+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            345555 335678999999999999999854122222     24555566666667777778888888876544321   


Q ss_pred             HhCCChHHHHHhh--------c--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-CCCCHHHHHHHHHH
Q 010291           84 LAAGALQPVIGLL--------S--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFA  152 (513)
Q Consensus        84 ~~~g~i~~L~~ll--------~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~  152 (513)
                         +.+..++..+        .  +...+.....+.++..+|...|+.-     ...++.+..++ ++.++.++..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               2333333330        1  1234555666778888987777622     23577888888 77888899999999


Q ss_pred             HHHHhh
Q 010291          153 LGRLAQ  158 (513)
Q Consensus       153 L~~l~~  158 (513)
                      |..+|.
T Consensus       146 l~~Lc~  151 (234)
T PF12530_consen  146 LAPLCE  151 (234)
T ss_pred             HHHHHH
Confidence            999993

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.86  E-value=0.36  Score=34.08  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcC
Q 010291          146 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGG  212 (513)
Q Consensus       146 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  212 (513)
                      .+.++|++++++..+.....+.+.+.++.++++..+. ...++--+..+|+-++...+....+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            4678999999998888777777788999999998754 478888889999999988888777766654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.84  E-value=1  Score=45.82  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             hhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            5 IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         5 i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      +|.++..+. +++|.+|.+|+..++.++-.-..    .+++ .-..|.+-|.+.+..||+.++.++..+....     ++
T Consensus       935 lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~ 1004 (1128)
T COG5098         935 LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QL 1004 (1128)
T ss_pred             HHHHHHHHhhCCCcceeccceeeccccceehhh----hhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ce
Confidence            344555553 55666666666555555431111    1111 1334555555666666666666666654321     12


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAAT  117 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  117 (513)
                      .-.|-++.+..+|.+++.++...|-..+..++..
T Consensus      1005 KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098        1005 KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             eeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            2245556666666666666666666666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.75  E-value=1.6  Score=46.09  Aligned_cols=170  Identities=15%  Similarity=0.175  Sum_probs=107.9

Q ss_pred             HHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChH--HHHHHhcCCCH-H
Q 010291          110 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSKNG-S  185 (513)
Q Consensus       110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~ll~~~~~-~  185 (513)
                      +|++++...++....+.+.|++..+...++. .+.+++..+...+.|++...+.+........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            5667787788888889999999999999986 467899999999999997766554433322222  33345544444 7


Q ss_pred             HHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH-HHHHHH--------HHhhhhhHHHHHHHHHH-
Q 010291          186 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK-TLKRLE--------EKIHGRVLNHLLYLMRV-  255 (513)
Q Consensus       186 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~l~~Lv~lL~~-  255 (513)
                      ....++..|+.+..+.+....-                 ..+.|+.. ..+.+.        .....-+.+.+..++.. 
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~-----------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTEC-----------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccc-----------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence            7788999999887654320000                 00011100 000110        01111122224444554 


Q ss_pred             hhcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcC
Q 010291          256 AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS  296 (513)
Q Consensus       256 ~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~  296 (513)
                      ..+..+..|++++.+++.. ++.++.+.+.|+++.+.+.-..
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL  678 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence            6778899999999999864 5577778888888888777654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.66  E-value=2.2  Score=42.21  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=107.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCCh----HHHHHHHHHHHHhhcCCchhh
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAATDSDCK  122 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~  122 (513)
                      ...+.+.+.+++..-+..|...|..++.+ ....+.++...++..|..++++.+.    ++...++.++..+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            45677788888888888899999999987 5666788888999999999987653    566667777776654322 11


Q ss_pred             HHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          123 VHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       123 ~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ...+...++.....+.+.  .+..+-..|+..|.++..++.. +..+.+.-.+..|+..++..+..++..|...+..+-.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            111222233334444432  3556778899999999977764 5566667778889999999999998887777766643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=2  Score=42.72  Aligned_cols=96  Identities=21%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             CChHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccch
Q 010291           87 GALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        87 g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      |++..++.. .++.+.++++.|+-+|+-+|..++.         .+...+++|.+ .++.+|...+.+|+--|.+...+.
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence            345555554 4555666666666666666644433         23344444443 356666666666665554443332


Q ss_pred             hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 010291          165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL  197 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  197 (513)
                            +++.|-.++.+.++-++..|+-+++.+
T Consensus       622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mI  648 (926)
T COG5116         622 ------ATDILEALMYDTNDFVRQSAMIAVGMI  648 (926)
T ss_pred             ------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence                  234455555555555666555555544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.56  E-value=0.9  Score=49.01  Aligned_cols=159  Identities=23%  Similarity=0.282  Sum_probs=116.4

Q ss_pred             ChhHHHHhhc----cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 010291            4 GIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         4 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      ..|.+++..+    .++|++|..|.-+|+.+..=+.+....     -.+.|+..|. ++++.+|.+++-+++-++...++
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            3456666663    357999999999999997644443332     4788999998 88999999999999999876555


Q ss_pred             HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      .-+.     .-+.|..-|.+.++.+|+.|..+|.+|...+     .+--.|.+..+..++.+++++++..|-.....|+.
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            4222     3455677788899999999999999997432     33346999999999999999999888877777764


Q ss_pred             ccccchhhHhcCChHHHHHHhcCC
Q 010291          159 DMHNQAGIAHNGGLVPLLKLLDSK  182 (513)
Q Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~  182 (513)
                      ....   +.  +.+|.++.-|.++
T Consensus      1065 k~n~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGNT---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             cccc---hh--hhchHHHHhhccC
Confidence            3311   11  3455555555554

>PRK14707 hypothetical protein; Provisional

Probab=92.46  E-value=16  Score=42.88  Aligned_cols=295  Identities=17%  Similarity=0.099  Sum_probs=144.2

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      +-++..+...|+..|..-..++++.+..+-..| +...++-|. =++..+...++..|..-..+..+.++.+--.+ |..
T Consensus       384 KWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~  461 (2710)
T PRK14707        384 KWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQ  461 (2710)
T ss_pred             cCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHH
Confidence            457778888888888876666788888776665 445555554 46666666666666655555566665554444 333


Q ss_pred             HHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC-HHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           92 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        92 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      .++.++ -++..+-..++..|..-...+++.++.+--.++...|-.+-+-++ +...+.+.+.-..+.....-.+.+-..
T Consensus       462 ~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~  541 (2710)
T PRK14707        462 ALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAH  541 (2710)
T ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhH
Confidence            344443 366666666666665544455665555544444444444444454 334445555555554333222222222


Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH---------
Q 010291          170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK---------  240 (513)
Q Consensus       170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~---------  240 (513)
                      +....+-.+-+.++....+.+...|..+.........-+....|..+++...--.....|...+......+         
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~  621 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKE  621 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhh
Confidence            22222223333444555556666665543333222222233333333322111122233433322222222         


Q ss_pred             hhhhhHHHHHHHHHH-hhcchhhhHHHHHhh-ccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHHHHH
Q 010291          241 IHGRVLNHLLYLMRV-AEKGVQRRVALALAH-LCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF  310 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~  310 (513)
                      .+..-+..++.-|.. ++......++..|.. +......+..+ +...+..+++-++. ++.+....++..|.
T Consensus       622 l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA  693 (2710)
T PRK14707        622 LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTF-NSLDVANALNALSKWPDTPVCAAAAGGMA  693 (2710)
T ss_pred             ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhc-chHHHHHHHHhhhcCCCchHHHHHHHHHH
Confidence            223334455555544 445555555555433 23333323222 23345555555554 55555555555553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.39  E-value=4.5  Score=42.59  Aligned_cols=218  Identities=16%  Similarity=0.157  Sum_probs=122.9

Q ss_pred             hhHHHHHHhCCChHHHHHhhcCCC------hHHHHHHHHHHHHhhcCCc-------hhhHHHHhcCChHHHHHHhCC---
Q 010291           77 PNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDS-------DCKVHIVQRGAVRPLIEMLQS---  140 (513)
Q Consensus        77 ~~~~~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~-------~~~~~~~~~~~i~~L~~~l~~---  140 (513)
                      +..++.-...|+....+.-+...+      .+-.+..+|-+..+....+       +....+...+++..++.+..-   
T Consensus       536 e~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~  615 (1516)
T KOG1832|consen  536 ESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPV  615 (1516)
T ss_pred             HhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCcc
Confidence            334455555566665555443322      1223444454444443333       223445666777777777753   


Q ss_pred             -----CCHHHHHHHHHHHHHHhhccccchhhHhc------C--ChHHHHHHhc----CCCHHHHHHHHHHHHhcccCc-c
Q 010291          141 -----PDVQLREMSAFALGRLAQDMHNQAGIAHN------G--GLVPLLKLLD----SKNGSLQHNAAFALYGLADNE-D  202 (513)
Q Consensus       141 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~-~  202 (513)
                           +..++..+|..+|+-+..-+..|..++..      .  ++..++....    -.+++++..|+.+|.|+...+ +
T Consensus       616 w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~  695 (1516)
T KOG1832|consen  616 WRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT  695 (1516)
T ss_pred             ccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC
Confidence                 23467788888888888878777776542      1  3444433322    126899999999999987644 5


Q ss_pred             hHHHHHh-hcCcccccchhhh-hhhhHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHhh-----cchhhhHHHHHhhccCC
Q 010291          203 NVADFIR-VGGVQKLQDGEFI-VQATKDCVAKTLKRL-EEKIHGRVLNHLLYLMRVAE-----KGVQRRVALALAHLCSP  274 (513)
Q Consensus       203 ~~~~~~~-~g~i~~L~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~~Lv~lL~~~~-----~~v~~~a~~aL~~l~~~  274 (513)
                      ++..... .|.-.-= ...+. ......-+...+++. ..+..++.|..|+.+|+-..     ..+|..||.+|.-|+++
T Consensus       696 ~r~s~i~~v~S~~g~-~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~  774 (1516)
T KOG1832|consen  696 TRPSTIVAVGSQSGD-RRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD  774 (1516)
T ss_pred             cchhhhhhccccCCC-ccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence            5444332 1110000 00000 011111222333333 34566789999999998743     35799999999999999


Q ss_pred             CCcceeeecCCch--HHHHhhhc
Q 010291          275 DDQRTIFIDGGGL--ELLLGLLG  295 (513)
Q Consensus       275 ~~~~~~l~~~~~i--~~L~~ll~  295 (513)
                      +..|+++.+.-.+  ..+..++.
T Consensus       775 ~tVrQIltKLpLvt~~~~q~lm~  797 (1516)
T KOG1832|consen  775 DTVRQILTKLPLVTNERAQILMA  797 (1516)
T ss_pred             cHHHHHHHhCccccchHHHHHhh
Confidence            9977765544333  23444444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.27  E-value=3.5  Score=46.04  Aligned_cols=146  Identities=9%  Similarity=0.120  Sum_probs=97.2

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .+..++..|..+...+|..|+++|..+..-++....   ...+-..+-.-+.++...||+.|+..++......++.-...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            355677778888899999999999999975443221   11222334455567788999999999998876666543333


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                           -..+.+-+.+....||..+...++.+|...|......   ..+..++....++...+++.+..++.++...+
T Consensus       894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence                 2345555566778899999999999997766543211   12223333333444448888888888887544

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.16  E-value=2.6  Score=46.90  Aligned_cols=142  Identities=16%  Similarity=0.212  Sum_probs=99.4

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      +.+..++..|..+...+|..|++||.++..-.+...   ....+-..+-.-+.+....||+.|+..++...-..++....
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence            346777888888889999999999999987655432   11223334445556778899999999999887666654443


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc---CCCHHHHHHHHHHHHhccc
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~  199 (513)
                           ....+..-+.++...||..++..++.+|...++-..+.     ..+.++++   +....++.-+..++.++..
T Consensus       893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence                 34577888888899999999999999997666543332     23344443   3334477777777777765

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.10  E-value=5.3  Score=34.18  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhcc-Cch----hHHHHH------hcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291           19 VQRAAAGALRTLAFK-NDE----NKNQIV------ECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus        19 ~~~~a~~~L~~l~~~-~~~----~~~~i~------~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      +|..|+.+|..+++. ++.    ....+.      ..+.-+.|+. ++.++++.+|..|+.+|..+-.++...-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            678888999988874 221    111222      1224445554 4458899999999999999987754432222211


Q ss_pred             C----Ch---------------HHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHH----HHHhCCCC
Q 010291           87 G----AL---------------QPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL----IEMLQSPD  142 (513)
Q Consensus        87 g----~i---------------~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L----~~~l~~~~  142 (513)
                      .    ..               ..|+..+..+ +..+......+|..+....|..+-.   .|.++.+    ..++.+.|
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCC
Confidence            1    11               3344444443 5677888999999999888876542   3555444    45556788


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 010291          143 VQLREMSAFALGRLAQDMH  161 (513)
Q Consensus       143 ~~~~~~a~~~L~~l~~~~~  161 (513)
                      +.++..+..+++.+....+
T Consensus       159 ~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             CcHHHHHHHHHHHHHcCCC
Confidence            8999999999888875443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.92  E-value=4  Score=41.77  Aligned_cols=129  Identities=16%  Similarity=0.127  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  135 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  135 (513)
                      +++.++..|.-+|..+---+.+..     ..-+|.++..++ +++|.+|.+|+..|+.+........+.     .-..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence            678999999888887743222221     235788888888 788999999999998887443332222     344677


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ..|.+.+..++..|..++.+|......+    -.|-+..+..+|.++|..+...|-..+..++.
T Consensus       978 rrL~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            8888889999999999999997533222    24777788999999998888877777777775

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=91.82  E-value=11  Score=36.75  Aligned_cols=171  Identities=16%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHHh-hccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChHH
Q 010291           16 DTKVQRAAAGALRTL-AFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQP   91 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~   91 (513)
                      ..+.+..|+.-|..+ +.++....++..+. ++..+++.|.+ .+...++.|++.|..++.+.+.   .+.+.  -++..
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai~K  375 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAICK  375 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHHHH
Confidence            345667777655544 44444444443332 45677788886 7888999999999999976433   22222  24444


Q ss_pred             HHHhhcCCChHHHHHHH-HHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh--Hh
Q 010291           92 VIGLLSSCCSESQREAA-LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI--AH  168 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~  168 (513)
                      +++.-.+.+.++...|. .++.-+++..|...        +..+..++...|......++..+..++..-.. +.+  +-
T Consensus       376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll  446 (516)
T KOG2956|consen  376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLL  446 (516)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhh
Confidence            55555555555554444 45666666666532        33344444445555655666667776642221 122  12


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          169 NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       169 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ....|.+++-..+.+..++..++.+|..+..
T Consensus       447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            3556668888888888999998888876653

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.76  E-value=8.2  Score=38.84  Aligned_cols=107  Identities=20%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      +|.+..+++-+.+++..+|.+++..|+.++. .-.-.....-.|.+..|..-+-+..+.||..|+.+|+.+-....+- +
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-e  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-E  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-H
Confidence            3455667777788899999999999998886 3333334445567777777777788999999999999986432221 1


Q ss_pred             HHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcC
Q 010291           82 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAAT  117 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~  117 (513)
                          ......++.++. ++..++++.|   |.|+..+
T Consensus       168 ----n~~~n~l~~~vqnDPS~EVRr~a---llni~vd  197 (885)
T COG5218         168 ----NRIVNLLKDIVQNDPSDEVRRLA---LLNISVD  197 (885)
T ss_pred             ----HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence                113345555554 3556787754   4666533

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.54  E-value=6.6  Score=33.98  Aligned_cols=143  Identities=16%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ++.++++..+++..++..|+..+..+.+..--+..     ..+|.++.+..++++.++..|...+..+....+..-..-.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~   84 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY   84 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            46677777889999999999999988764222222     2588999999999999999999999999876555433322


Q ss_pred             hCCChHHHHHhhc---CCCh-HH---HHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--------CHHHHHHH
Q 010291           85 AAGALQPVIGLLS---SCCS-ES---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--------DVQLREMS  149 (513)
Q Consensus        85 ~~g~i~~L~~ll~---~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--------~~~~~~~a  149 (513)
                      ..| +..-..+-.   .+.. ..   .......+..+...+...|..     ++..+++.+...        .+.-....
T Consensus        85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~  158 (187)
T PF12830_consen   85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDFL  158 (187)
T ss_pred             HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHHH
Confidence            222 222222211   1111 01   334444555555544444444     344566655432        23344555


Q ss_pred             HHHHHHHhh
Q 010291          150 AFALGRLAQ  158 (513)
Q Consensus       150 ~~~L~~l~~  158 (513)
                      ..+..||+.
T Consensus       159 ~Fla~nLA~  167 (187)
T PF12830_consen  159 LFLAENLAT  167 (187)
T ss_pred             HHHHHHHhc
Confidence            666666654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.30  E-value=1.6  Score=39.99  Aligned_cols=140  Identities=17%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +...+..|.+.++.....++..|..++..+++....+... +|-.+++-+++....|-+.|+.++..+...-..   .+.
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~i~  165 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---SID  165 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            4456677788899999999999999988777665555544 566778888888889999999999999753222   222


Q ss_pred             hCCChHHHHHhh-cC---CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           85 AAGALQPVIGLL-SS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        85 ~~g~i~~L~~ll-~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      +  .+..++..| ..   ++.-+++.|-.+|..+...-...       .+++.|+..+...++.++..++.+..+..
T Consensus       166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2  233333333 22   34568889999999997443332       24677888888888888888877666653

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.10  E-value=9.9  Score=33.25  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHH
Q 010291           62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLI  135 (513)
Q Consensus        62 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~  135 (513)
                      ...|+..|.-++.+ ++.+..+++..+.-.+-.+|...     ...+|-.+..+++.+...+. .....+....++|.++
T Consensus       117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            34566666666655 88888888887766666666542     34577888999999985544 4455667788999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhccccchhhHh--------cCChHHH-HHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291          136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH--------NGGLVPL-LKLLDSKNGSLQHNAAFALYGLADNEDNVAD  206 (513)
Q Consensus       136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  206 (513)
                      +++..+++--+..++.++..+..++.+-..+..        ...+..+ .++.+.+......+++++-..||.++..+. 
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~-  274 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA-  274 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH-
Confidence            999998888888888888888776655433221        1122232 344556678888999999999998776544 


Q ss_pred             HHhhcCcccccc
Q 010291          207 FIRVGGVQKLQD  218 (513)
Q Consensus       207 ~~~~g~i~~L~~  218 (513)
                      +.....-..|.+
T Consensus       275 lL~~~lP~~Lrd  286 (315)
T COG5209         275 LLSSKLPDGLRD  286 (315)
T ss_pred             HHhccCCccccc
Confidence            334333334433

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.38  E-value=1  Score=33.60  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  126 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  126 (513)
                      ....+..|.++.+-+|..++..|+++.....  .......+++..+...++++++-+--+|...|..|+...+.      
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH------
Confidence            3456667788888899999999999997655  12222245777888889999999999999999999966654      


Q ss_pred             hcCChHHHHHHhCC
Q 010291          127 QRGAVRPLIEMLQS  140 (513)
Q Consensus       127 ~~~~i~~L~~~l~~  140 (513)
                        .+++.|++...+
T Consensus        77 --~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 --EVLPILLDEYAD   88 (92)
T ss_pred             --HHHHHHHHHHhC
Confidence              245566655443

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=90.23  E-value=0.15  Score=46.92  Aligned_cols=54  Identities=22%  Similarity=0.405  Sum_probs=45.2

Q ss_pred             cCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCch-hhHhhhhhhHHHH
Q 010291          442 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEI  495 (513)
Q Consensus       442 ~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~l  495 (513)
                      .++++|++.++.-|+...++.|.+.|+.|+..|+.+|+.++ ++.-++.+++..|
T Consensus        71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL  125 (317)
T PF11822_consen   71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL  125 (317)
T ss_pred             cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence            48999999999999999999999999999999999999876 5555654443333

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=89.58  E-value=8.8  Score=39.50  Aligned_cols=190  Identities=14%  Similarity=0.096  Sum_probs=108.2

Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      ++.++++.|++++...|..+|-.-+.-+-+..   +......++..++|.+..-+.+.++.+++.++.++..|+..=..+
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            55678999999999999888865554444443   333445667788999999999999999999998888887311111


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (513)
                        ......+..+.++-.+.+..++.+..-+++.++.+.....   +.+++                              
T Consensus       404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL------------------------------  448 (690)
T KOG1243|consen  404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVL------------------------------  448 (690)
T ss_pred             --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hcccc------------------------------
Confidence              1111122233333334456677777777777765422111   11111                              


Q ss_pred             hhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          244 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                        ......-++++-...|.++.+++......-+...  +....+|.+.-+.-+++..+|..|-.++......
T Consensus       449 --~~aftralkdpf~paR~a~v~~l~at~~~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  449 --ASAFTRALKDPFVPARKAGVLALAATQEYFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             --chhhhhhhcCCCCCchhhhhHHHhhcccccchhh--hhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence              1111223444445556666666655443322111  1223455566666666666666666665554433

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.50  E-value=7.5  Score=41.57  Aligned_cols=156  Identities=19%  Similarity=0.158  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc------C--CCHHHHHHHHHHHHHhhcC--ChhHHHHHHhCCChH
Q 010291           21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------S--EDSAIHYEAVGVIGNLVHS--SPNIKKEVLAAGALQ   90 (513)
Q Consensus        21 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------~--~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~   90 (513)
                      .+|...+..++...  .++.  -.|.++.+++.|.      .  .++.-...|++++++++.-  ....-+..++.=.++
T Consensus       390 ~Aa~~~l~~~~~KR--~ke~--l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~  465 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKR--GKET--LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN  465 (1010)
T ss_pred             HHHHHHHHHHHHhc--chhh--hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence            34556666665431  1111  1245666777776      1  3466677888888888721  011112233333556


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhHh-
Q 010291           91 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH-  168 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-  168 (513)
                      .+...+.++.--+|..|||+++.+++.+-.....+.  .++....+.|. +++..|+..|+-+|..+..+.+....-+. 
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            666677888889999999999999844333222222  35667777777 67788999999999999876654422222 


Q ss_pred             --cCChHHHHHHhcCC
Q 010291          169 --NGGLVPLLKLLDSK  182 (513)
Q Consensus       169 --~~~i~~L~~ll~~~  182 (513)
                        .+.++.|+++.+.-
T Consensus       544 hvp~~mq~lL~L~ne~  559 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEV  559 (1010)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence              23344455555443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=89.06  E-value=5.8  Score=40.88  Aligned_cols=137  Identities=18%  Similarity=0.125  Sum_probs=86.1

Q ss_pred             hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCcchHH
Q 010291          127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVA  205 (513)
Q Consensus       127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~  205 (513)
                      ...+++.|...+++.+..+++.++..+..++..-+  ...+....++.+..+. .+.+..++.+++-+++.+...-+   
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD---  461 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD---  461 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH---
Confidence            34567777777888888888888888888775333  2334444555555553 34456777777777776662111   


Q ss_pred             HHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCC
Q 010291          206 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG  285 (513)
Q Consensus       206 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~  285 (513)
                                                       ...--+.+..+....+..++.+......+..++.........+....
T Consensus       462 ---------------------------------~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~  508 (700)
T KOG2137|consen  462 ---------------------------------KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAEN  508 (700)
T ss_pred             ---------------------------------HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhh
Confidence                                             11111223444444555788888888888888876555446667778


Q ss_pred             chHHHHhhhcCCCcch
Q 010291          286 GLELLLGLLGSTNPKQ  301 (513)
Q Consensus       286 ~i~~L~~ll~~~~~~v  301 (513)
                      ++|.+..+...+.-..
T Consensus       509 VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  509 VLPLLIPLSVAPSLNG  524 (700)
T ss_pred             hhhhhhhhhhcccccH
Confidence            8888888877654333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.94  E-value=3.3  Score=38.06  Aligned_cols=141  Identities=15%  Similarity=0.227  Sum_probs=95.7

Q ss_pred             ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH
Q 010291           88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA  167 (513)
Q Consensus        88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  167 (513)
                      ++...+..|.+.+++....++..+..|+...++....+.. ..+-.+++-++.....+-..|+.++..+...-.+...- 
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3455666777888888888888899888666654443332 35667778888888889999999999987543332211 


Q ss_pred             hcCChHHHHHHh----cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291          168 HNGGLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       168 ~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (513)
                         .++.++..|    ..++.-+++.|-.+|..+..+...                                       .
T Consensus       167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------------------------~  204 (334)
T KOG2933|consen  167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------------------------Q  204 (334)
T ss_pred             ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------------------------H
Confidence               233333333    233455778888888877764432                                       2


Q ss_pred             hhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291          244 RVLNHLLYLMRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~  272 (513)
                      .+++.|...+++.++.++..++.+..+..
T Consensus       205 ~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  205 KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            35777888888988888888887776664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=88.73  E-value=4.4  Score=33.99  Aligned_cols=144  Identities=17%  Similarity=0.148  Sum_probs=78.5

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           46 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        46 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      .++.|+++|+. .+..+|.+++++||.|..=+|...+.+...  .+.-.  -...+........   .+.  +.....+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l---~~~--~~~~~~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISL---PMM--GISPSSEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHH---hhc--cCCCchHH
Confidence            46677888884 468999999999999976555543322111  11000  0011111111111   111  11111222


Q ss_pred             HHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291          125 IVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  198 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  198 (513)
                      ..-.-++..|+..|+++.- .-...++.++.++......+..-.-...++.++..++..++..++....-|+.|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3333467888999987632 3344677777777744333332222356777888888777777777666666543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.73  E-value=1.5  Score=38.69  Aligned_cols=83  Identities=22%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcC-------CHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH-HHHHhCCC
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECN-------ALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGA   88 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-------~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~   88 (513)
                      .-|.-|+++|.+++- .+.|...+...+       .+..|+++|. .+++..|+.|+-.|.+++..++... ....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            358899999999997 566666655443       4556666666 5789999999999999998776654 55557789


Q ss_pred             hHHHHHhhcCCCh
Q 010291           89 LQPVIGLLSSCCS  101 (513)
Q Consensus        89 i~~L~~ll~~~~~  101 (513)
                      |..|+.++++.+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999986544

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.12  E-value=9.8  Score=40.12  Aligned_cols=102  Identities=23%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             hHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchh---------hHHHHhcCChHHHHHHhC----CCCHHHHHHHHH
Q 010291           89 LQPVIGLLSS----CCSESQREAALLLGQFAATDSDC---------KVHIVQRGAVRPLIEMLQ----SPDVQLREMSAF  151 (513)
Q Consensus        89 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~~l~----~~~~~~~~~a~~  151 (513)
                      +..+..++..    ..+.++..|..+++.+.......         ........+++.+...+.    ..+.+-+..++.
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            4445555553    35667777887777776321111         111223345666666665    456778888999


Q ss_pred             HHHHHhhccccchhhHhcCChHHHHHHhcCC---CHHHHHHHHHHHHhcccC
Q 010291          152 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADN  200 (513)
Q Consensus       152 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~  200 (513)
                      +|+|+..          ...++.+..++...   +..++..|++++..++..
T Consensus       513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~  554 (618)
T PF01347_consen  513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH  554 (618)
T ss_dssp             HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred             HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence            9999842          13455677777665   577888999999987653

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.07  E-value=5  Score=40.27  Aligned_cols=96  Identities=18%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC
Q 010291          103 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  182 (513)
Q Consensus       103 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~  182 (513)
                      +.......+......+|+. ..++ .|.+..++.-+.+++..++..++..|+-+...-..-....-.|.+..|.+-+-+.
T Consensus        67 il~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR  144 (885)
T COG5218          67 ILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR  144 (885)
T ss_pred             HHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc
Confidence            3333333333343455554 2233 2667777788888999999999999999886544444555567777788888888


Q ss_pred             CHHHHHHHHHHHHhcccC
Q 010291          183 NGSLQHNAAFALYGLADN  200 (513)
Q Consensus       183 ~~~~~~~a~~~L~~l~~~  200 (513)
                      .+.++..|+.+|..+-..
T Consensus       145 E~~VR~eAv~~L~~~Qe~  162 (885)
T COG5218         145 EKAVRREAVKVLCYYQEM  162 (885)
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            899999999999987653

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.72  E-value=6.8  Score=33.07  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC--ChHHHHHhhcCCC-hHHHHHHHHHHHHhh---cCCc
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCC-SESQREAALLLGQFA---ATDS  119 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~-~~~~~~a~~~L~~l~---~~~~  119 (513)
                      .+..+..+|.++++.-|..++..+...+..++  .+.+.+.+  -+..++..++.++ ..+.+.++.+|..+.   .+.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            35567788899899999999999988886542  23443433  5778888888755 566778888887776   4445


Q ss_pred             hhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291          120 DCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus       120 ~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+.+..   .++++.+++++++  ......++.+|..+-..
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            54444433   2344555555554  45666777777777643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=87.69  E-value=15  Score=37.60  Aligned_cols=162  Identities=21%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHH---hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CCh
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GAL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i   89 (513)
                      ..++++.-|+.+|+-+..+...+-..+-   ....+..++..+. .++..+..++++|.|+..+ +..++.+...  ..+
T Consensus       556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~  633 (745)
T KOG0301|consen  556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL  633 (745)
T ss_pred             CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence            4556677888888888775443333332   1224445555554 5577788899999999877 6555555433  122


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---C--CCHHHHHHHHHHHHHHhhccccch
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S--PDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~--~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      ..+.+.-..++..++...+....|++..-   .+.-.+.+..+.+...+.   +  +|-+.....+.+|++|+..+....
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~  710 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI  710 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence            22233223344566655554444544110   001111344444444443   2  244556677888999998888877


Q ss_pred             hhHhcCChHHHHHHhcC
Q 010291          165 GIAHNGGLVPLLKLLDS  181 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~  181 (513)
                      .+...-.++.+.+-+++
T Consensus       711 ~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  711 QLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHhcCHHHHHHHHHH
Confidence            78777777777776654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=87.62  E-value=9.9  Score=40.73  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=98.5

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHH
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV   92 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   92 (513)
                      .+.|..+...|+.+|..++.......... ..++.+.++..++...+.++..+..++-.++.....       ....+.+
T Consensus       305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I  376 (815)
T KOG1820|consen  305 KDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAI  376 (815)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHH
Confidence            34577888899999999998644442222 235688899999988888888888887777643221       2356778


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           93 IGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        93 ~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      ...+.+.++..+..+...+........ .....-.-.+.++.++...++.+.++|..+..++..+-.
T Consensus       377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            888999999999887766666554333 212222234578888899999999999999999888754

>KOG2676 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.44  E-value=1.1  Score=41.61  Aligned_cols=64  Identities=11%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             HHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291           23 AAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus        23 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      ..+.|++++..+++++..+.+.||++.++.-..  +.+|-+++..+.|+.+|..++.++++.+...
T Consensus       376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km  441 (478)
T KOG2676|consen  376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM  441 (478)
T ss_pred             HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence            567899999999999999999999999887655  6789999999999999999999988776543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.34  E-value=6.3  Score=36.41  Aligned_cols=155  Identities=18%  Similarity=0.142  Sum_probs=88.2

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcC--CHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +.+..++.+.-++..++-++. ++.....+...+  +...+..++.    ..++..+..+++++.|+..+ +..+..+..
T Consensus        72 ~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~  149 (268)
T PF08324_consen   72 LLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLS  149 (268)
T ss_dssp             HCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHC
T ss_pred             HHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHh
Confidence            333333445566666665555 444444444332  2444555544    24678899999999999876 445555554


Q ss_pred             CC--ChHHHHHhhcCC----ChHHHHHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHh-CC-CCHHHHHHHHHHHHHH
Q 010291           86 AG--ALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEML-QS-PDVQLREMSAFALGRL  156 (513)
Q Consensus        86 ~g--~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l-~~-~~~~~~~~a~~~L~~l  156 (513)
                      ..  .+...+..+...    +..++..++..+.|++......+ ..-.....+..+.+.+ .. .+++....++-+|+++
T Consensus       150 ~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL  229 (268)
T PF08324_consen  150 HFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL  229 (268)
T ss_dssp             THHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence            32  222222223333    67888999999999973211111 0001112355566633 33 5999999999999999


Q ss_pred             hhccccchhhHh
Q 010291          157 AQDMHNQAGIAH  168 (513)
Q Consensus       157 ~~~~~~~~~~~~  168 (513)
                      ...+........
T Consensus       230 ~~~~~~~~~~~~  241 (268)
T PF08324_consen  230 LSSSDSAKQLAK  241 (268)
T ss_dssp             HCCSHHHHHHCC
T ss_pred             hccChhHHHHHH
Confidence            966655444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.02  E-value=47  Score=35.59  Aligned_cols=153  Identities=14%  Similarity=0.076  Sum_probs=102.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.-|+++....+.++...-..+|...+.-+++... ..+..+.|.++.+..  +++|.+...+-.++-.++.. ..+. .
T Consensus       532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g  608 (1005)
T KOG2274|consen  532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-G  608 (1005)
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-c
Confidence            34455555555666666777788877775555433 345566777766554  67888888887787777752 2221 1


Q ss_pred             HHhCCChHHHHHhhcCCC----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 010291           83 VLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA  157 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~  157 (513)
                      -.+...+|.++..+..++    +.....++..|..+.+..|.......-.-+.|++.++.-. +|.++..++..||+.+.
T Consensus       609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            223347899999998765    6777888888888877766544444444567888777654 57788889999999887


Q ss_pred             hcc
Q 010291          158 QDM  160 (513)
Q Consensus       158 ~~~  160 (513)
                      ...
T Consensus       689 s~~  691 (1005)
T KOG2274|consen  689 SVT  691 (1005)
T ss_pred             hcC
Confidence            653

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.70  E-value=45  Score=35.09  Aligned_cols=241  Identities=15%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhc
Q 010291           49 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR  128 (513)
Q Consensus        49 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  128 (513)
                      .+..+.++.++.+|+..--++..++.-+++.  .    -+...+..-.....+..+..|.++|+.+..+..-.       
T Consensus        68 ~~tKlfQskd~~LRr~vYl~Ikels~isedv--i----ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~-------  134 (865)
T KOG1078|consen   68 AITKLFQSKDVSLRRMVYLAIKELSKISEDV--I----IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ-------  134 (865)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHhhccccchhh--h----hhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH-------
Confidence            3445555777777777777777776544432  0    12334444433445667788888888886332211       


Q ss_pred             CChHHHHHHhCCCCHHHHHHH-HHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HH
Q 010291          129 GAVRPLIEMLQSPDVQLREMS-AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-AD  206 (513)
Q Consensus       129 ~~i~~L~~~l~~~~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~  206 (513)
                      ++-..+-+.+-+.++.+...| +..++-+......-+...     .....-..+.+.-+|.+|++.|..+-.+.... ..
T Consensus       135 ~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~-----neiqea~~s~~~m~QyHalglLyqirk~drla~sk  209 (865)
T KOG1078|consen  135 AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA-----NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSK  209 (865)
T ss_pred             HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH-----HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            011112222223333333222 222333322222111111     11122223334456778888888775533221 11


Q ss_pred             HHhhcCcccccchhhhhhhhHHHHHH--HHHHHHHH--hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeee
Q 010291          207 FIRVGGVQKLQDGEFIVQATKDCVAK--TLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI  282 (513)
Q Consensus       207 ~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~  282 (513)
                      ++.     .+.+.. .-...+.|...  +.+.+...  ......+.+=.++++...-+...|+.++.++......  .+.
T Consensus       210 lv~-----~~~~~~-~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~  281 (865)
T KOG1078|consen  210 LVQ-----KFTRGS-LKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA  281 (865)
T ss_pred             HHH-----HHcccc-ccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc
Confidence            111     111100 00001112111  11112111  1223455566677777888999999999988532211  111


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .  .+..|.-++.++.+.+|..|...|..++-..+
T Consensus       282 p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  282 P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            1  78888888999999999999999999986554

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=86.50  E-value=7.3  Score=29.42  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL   96 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll   96 (513)
                      ++|.+|+.-|..--.+.--....+. ..+.+..|++..+.++.-....++..|..++.. +.....+.+.|++..|.++-
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence            5677777655433332222233333 345667777777777777888999999998876 66668888889999877777


Q ss_pred             cCCChHHHHHHHHHH
Q 010291           97 SSCCSESQREAALLL  111 (513)
Q Consensus        97 ~~~~~~~~~~a~~~L  111 (513)
                      ..-++..+...-.++
T Consensus        81 ~~~~~~~~~~id~il   95 (98)
T PF14726_consen   81 PNVEPNLQAEIDEIL   95 (98)
T ss_pred             hcCCHHHHHHHHHHH
Confidence            666666665554444

>PRK14707 hypothetical protein; Provisional

Probab=86.40  E-value=65  Score=38.32  Aligned_cols=147  Identities=17%  Similarity=0.163  Sum_probs=83.7

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      +-++..+...|+..|..-...+++.+..+-.. ++...++-|. =++..+...|+..|..=..+..+.++.+-..|+-..
T Consensus       342 KWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~  420 (2710)
T PRK14707        342 KWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNA  420 (2710)
T ss_pred             cCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHH
Confidence            44666777777777776555466666665433 4666666665 345555555555555555565777776655554444


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHH-HHHHHhhccc
Q 010291           92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAF-ALGRLAQDMH  161 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~-~L~~l~~~~~  161 (513)
                      |--+-+-++..+...++..|..-..++.+.+..+--.++.. .++.++. +|..+-..++. ....|+.+.+
T Consensus       421 lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~-~LnalSKWPd~p~c~~aa~~La~~l~~~~~  491 (2710)
T PRK14707        421 LNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQ-ALDALSKWPDTPICGQTASALAARLAHERR  491 (2710)
T ss_pred             HHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHH-HHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence            43344447777888888877776667677666554444333 3444443 55444433333 3344443333

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.27  E-value=7.6  Score=32.77  Aligned_cols=108  Identities=22%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccch
Q 010291           88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      .+..+..++.+.+++-+-.++..+.-.+..++.  +.+.+  ...+..+++.++++ ++.+.+.++.+|..+...-....
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            455678888888888887777777777755432  33322  34688899999886 56778899999998885444433


Q ss_pred             hhHhc-------CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          165 GIAHN-------GGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       165 ~~~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      .+.++       +.++.++++++.  ......++.+|..+-.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            33322       234445555553  4555667777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.14  E-value=7  Score=41.42  Aligned_cols=153  Identities=14%  Similarity=0.217  Sum_probs=98.6

Q ss_pred             HHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh--HHHHHhhcCCCh-
Q 010291           26 ALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL--QPVIGLLSSCCS-  101 (513)
Q Consensus        26 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~-  101 (513)
                      +|.+....+++....+.+.|++..+..+++ -.+.+++..+++.+++++...+. +.......-+  ..+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence            788888889999999999999999999999 45778999999999999865322 2221111111  233334444444 


Q ss_pred             HHHHHHHHHHHHhhcCCchhh-----------------------HHHHhcCChHH-HHHHhCC-CCHHHHHHHHHHHHHH
Q 010291          102 ESQREAALLLGQFAATDSDCK-----------------------VHIVQRGAVRP-LIEMLQS-PDVQLREMSAFALGRL  156 (513)
Q Consensus       102 ~~~~~a~~~L~~l~~~~~~~~-----------------------~~~~~~~~i~~-L~~~l~~-~~~~~~~~a~~~L~~l  156 (513)
                      +..+.++..|..+....++..                       ..........+ +..++.. ..+..+..|.|++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            777888888888876533210                       00111122222 4444443 3567888999999999


Q ss_pred             hhccc-cchhhHhcCChHHHHHHh
Q 010291          157 AQDMH-NQAGIAHNGGLVPLLKLL  179 (513)
Q Consensus       157 ~~~~~-~~~~~~~~~~i~~L~~ll  179 (513)
                      ..... ..+.+.+.|++..+.+.-
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~  676 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIR  676 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcc
Confidence            96544 455566677776665543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.14  E-value=32  Score=32.87  Aligned_cols=159  Identities=14%  Similarity=0.087  Sum_probs=105.1

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhc-CCchhhHHHHh-cC-ChHHHHHHhCCC-----C--------HHHHHHHHHH
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQ-RG-AVRPLIEMLQSP-----D--------VQLREMSAFA  152 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-~~-~i~~L~~~l~~~-----~--------~~~~~~a~~~  152 (513)
                      +..+...|++....+...+...|..++. ........+.. -+ -.+.+-.++...     +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7778888888888888899999999987 44444444443 22 234555555311     1        2788777777


Q ss_pred             HHHHhhcc--ccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHh-cccCcchHHHHHhhcCcccccchhhhhhhhHH
Q 010291          153 LGRLAQDM--HNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYG-LADNEDNVADFIRVGGVQKLQDGEFIVQATKD  228 (513)
Q Consensus       153 L~~l~~~~--~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~  228 (513)
                      +..+....  ..+..+.. .+.+..+.+-+..++.++....+.++.. +..++ ......+.                  
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~------------------  198 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKC------------------  198 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhh------------------
Confidence            66666433  33555555 4556668888988889999999998885 33333 32222221                  


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhhc----chhhhHHHHHhhccCCCC
Q 010291          229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEK----GVQRRVALALAHLCSPDD  276 (513)
Q Consensus       229 ~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~----~v~~~a~~aL~~l~~~~~  276 (513)
                                .+.+..++..|+.+-...++    .+...+-..|..+|.++.
T Consensus       199 ----------~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  199 ----------KLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             ----------hhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence                      23456678888887777666    788888888888886543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=85.92  E-value=16  Score=32.93  Aligned_cols=137  Identities=18%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             HHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291           48 PTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  126 (513)
Q Consensus        48 ~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  126 (513)
                      +.++. +-+..++..+...+.+|..++.....+...     ++..+..+.+.+..+....+...+..+...++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            44444 334678999999999999999875122122     45666777777777777778888888875544322    


Q ss_pred             hcCChHHHHHH--h------CC--CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHH
Q 010291          127 QRGAVRPLIEM--L------QS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALY  195 (513)
Q Consensus       127 ~~~~i~~L~~~--l------~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~  195 (513)
                        +.+..++..  +      .+  ...+.....+.++..+|...+++.    ...++.+...+ .+.++.++..++.+|.
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~  147 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALA  147 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence              233333333  1      11  133445555678888887666521    23466677888 7788889999999999


Q ss_pred             hccc
Q 010291          196 GLAD  199 (513)
Q Consensus       196 ~l~~  199 (513)
                      .+|.
T Consensus       148 ~Lc~  151 (234)
T PF12530_consen  148 PLCE  151 (234)
T ss_pred             HHHH
Confidence            9994

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=85.73  E-value=5.4  Score=41.12  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .++|.|.+.+++.+..+|..++..+...+.. -+  ...+..-++|.+-++.. +.+..++..++.|+..+...    .+
T Consensus       389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD  461 (700)
T KOG2137|consen  389 KILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LD  461 (700)
T ss_pred             HHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HH
Confidence            3566777777888889999999988888762 22  34445556777766533 67888999999999988821    22


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD  142 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~  142 (513)
                      ...-...+..+....+..++.+......+..++....... ..++...++|.++.+...+.
T Consensus       462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            2222234555666666788888888888888877554442 34455577887777776654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=84.78  E-value=55  Score=34.34  Aligned_cols=145  Identities=15%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             CCChhHHHHhhc-c-------CCHHHHHHHHHHHHHhhc--cCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010291            2 EGGIPPLVELLE-F-------TDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN   71 (513)
Q Consensus         2 ~g~i~~Lv~lL~-~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~   71 (513)
                      .|.++-++..|. +       +++.-.+.|++.++++..  ..+.-...+.+.=+++.+++.++++---++.+|+..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            477788888883 2       234556667777777654  222222333343456677777788888899999999999


Q ss_pred             hhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCCCHHHHHHH
Q 010291           72 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMS  149 (513)
Q Consensus        72 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a  149 (513)
                      +..+   .++...-..+.+...+++.+++-.++-.|+.++..+..+. +....+.+  .+.++.|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9543   3333444456677778888888889999999999988664 22222221  3344445544444344444333


Q ss_pred             H
Q 010291          150 A  150 (513)
Q Consensus       150 ~  150 (513)
                      .
T Consensus       563 M  563 (970)
T COG5656         563 M  563 (970)
T ss_pred             H
Confidence            3

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.45  E-value=3.8  Score=33.59  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~   74 (513)
                      ++..|..-|+++++.++..|+..|-.++.+. ......+...+.+..|+.++.. .++.|+..++..+...+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            4566777788999999999999999998753 3566778888899999999986 788999999988888764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=84.44  E-value=36  Score=33.70  Aligned_cols=183  Identities=14%  Similarity=0.104  Sum_probs=96.1

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh-hHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP-NIKKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~   82 (513)
                      +..|+.++.|+|+..|......|.++-......|..++.. +...+.+.+. ..........+..++.+..+.. ..++.
T Consensus       135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e  213 (409)
T PF01603_consen  135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE  213 (409)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence            5678899999999999999999999887666666666553 4556666666 4455667778888888876532 11111


Q ss_pred             HHhCCChHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           83 VLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      ... =....++.+..... ......-..++......++.....+     +..+++.=-..++.-...-+.-+..+...-+
T Consensus       214 h~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~~~~  287 (409)
T PF01603_consen  214 HKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILEVLP  287 (409)
T ss_dssp             HHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred             HHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence            100 01233344444433 2223444455555555555433322     3344444444444444444444444443221


Q ss_pred             c-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291          162 N-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL  194 (513)
Q Consensus       162 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  194 (513)
                      . .-.-+.......+...+.+.+..+.+.|+..+
T Consensus       288 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w  321 (409)
T PF01603_consen  288 PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW  321 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            1 11111122344566777888888877776543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.23  E-value=2.3  Score=37.58  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhCCCh-------HHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhh-HHHHhcCC
Q 010291           60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-------QPVIGLLSS-CCSESQREAALLLGQFAATDSDCK-VHIVQRGA  130 (513)
Q Consensus        60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~  130 (513)
                      .-|..|+.+|.+++.. +.+.+.+...+-.       ..|++++.. .+.-.|+.|+..|.+++..++... ....+.+.
T Consensus       139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            4588999999999976 4455555555443       444555544 567889999999999998877654 45567889


Q ss_pred             hHHHHHHhCCCC
Q 010291          131 VRPLIEMLQSPD  142 (513)
Q Consensus       131 i~~L~~~l~~~~  142 (513)
                      +..|+.++.+.+
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997553

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=83.80  E-value=4.3  Score=33.25  Aligned_cols=71  Identities=11%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~   74 (513)
                      ++..|..-|+++++.++..|+..|-.+..+ .......+...+.+..|+.++. ..++.|+..++..+..-+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            456677778889999999999999998875 3557777888889999999887 5678899999888877763

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.14  E-value=3.7  Score=43.28  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             HHHHhhcc----CCHHHHHHHHHHHHHhhccCchh---------HHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHH
Q 010291            7 PLVELLEF----TDTKVQRAAAGALRTLAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVI   69 (513)
Q Consensus         7 ~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~---------~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L   69 (513)
                      .+.+++++    +++.++..|+-+++.+....-..         .........++.+...|.    ..+.+-+..++.+|
T Consensus       435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  514 (618)
T PF01347_consen  435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL  514 (618)
T ss_dssp             HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence            34445543    35667777777777776421111         112222345667776666    45678888999999


Q ss_pred             HHhhcCChhHHHHHHhCCChHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHH
Q 010291           70 GNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQ  144 (513)
Q Consensus        70 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~  144 (513)
                      +|+...           ..++.+..++.+.   ...+|..|+++|..+....+..        +.+.+++++.+  .+++
T Consensus       515 gN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~E  575 (618)
T PF01347_consen  515 GNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPE  575 (618)
T ss_dssp             HHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HH
T ss_pred             hccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChh
Confidence            999632           2577778877765   5789999999999887555432        34466777765  4778


Q ss_pred             HHHHHHHHHHH
Q 010291          145 LREMSAFALGR  155 (513)
Q Consensus       145 ~~~~a~~~L~~  155 (513)
                      +|..|..+|..
T Consensus       576 vRiaA~~~lm~  586 (618)
T PF01347_consen  576 VRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88887766655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=82.77  E-value=28  Score=32.82  Aligned_cols=143  Identities=22%  Similarity=0.300  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhc-----------CCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChh
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVEC-----------NALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----------g~i~~Lv~lL~------~~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      .-++|..|+.++.....+|++.+..+++.           .....++..|-      +.|+.-...|+.+|.++..++++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            46899999999999999999999887642           11223555554      44666777899999999999999


Q ss_pred             HHHHHHhC--C----------ChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHHhcC-ChHHHHHHhCC
Q 010291           79 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQS  140 (513)
Q Consensus        79 ~~~~~~~~--g----------~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~~l~~  140 (513)
                      .|+....-  |          .++.+..+|-.     .++.++..-+..|..-..+++.....+...+ .++.|+.....
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~  210 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ  210 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence            88876643  1          13334444433     3556666666666666677788777777654 78889887643


Q ss_pred             ---CCHHHHHHHHHHHHHHhh
Q 010291          141 ---PDVQLREMSAFALGRLAQ  158 (513)
Q Consensus       141 ---~~~~~~~~a~~~L~~l~~  158 (513)
                         .++-++-.++..|+-+-.
T Consensus       211 ~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  211 SSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHH
Confidence               355666666655555443

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.65  E-value=6.4  Score=31.82  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcC
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHS   75 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~~L~~l~~~   75 (513)
                      ++..|...|+++++.++..|+..|-.+..+... ....+.....+..++.++..   .++.|+..++..+...+..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456677778899999999999999999886443 66667776778888888874   4788999999988877643

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.77  E-value=30  Score=37.68  Aligned_cols=262  Identities=15%  Similarity=0.117  Sum_probs=138.7

Q ss_pred             HHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC----
Q 010291           24 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----   99 (513)
Q Consensus        24 ~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----   99 (513)
                      ..+|..+.+++.+++..+.+..++..+++.+-  +.+-|...++++..+....+...    ...-+-.+++.|.+.    
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence            56788888889999999999999998888884  45566666777776655434321    111234455555541    


Q ss_pred             ----C----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----------CCHHHHHHHHHH---H--HHH
Q 010291          100 ----C----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLREMSAFA---L--GRL  156 (513)
Q Consensus       100 ----~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~~~~a~~~---L--~~l  156 (513)
                          .    .+.......+++.+...+...+..+.++++...|...|-.          +|.-+...-...   +  ..+
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence                1    2344556677888876666667778888888887766631          121111111111   1  123


Q ss_pred             hhccccchhhHhcCChHHHHHHhcCCC---HHHHHHHHHHHHhcc----cCcchHHHHHhhcCcccccchhhhhhhhHHH
Q 010291          157 AQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLA----DNEDNVADFIRVGGVQKLQDGEFIVQATKDC  229 (513)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~l~----~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~  229 (513)
                      |.+..++.++-..-.-+.+..+|....   -+.-+..+..|..++    ..+....+.....-+..+-+..+..-..   
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP---  893 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP---  893 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC---
Confidence            455556655433333333444444322   000011111111111    1111111111111011110000000000   


Q ss_pred             HHHH-HHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhc
Q 010291          230 VAKT-LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG  295 (513)
Q Consensus       230 ~~~~-~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~  295 (513)
                       .+. ....+.+++.+++..++..+-...+..|..-+..+..+++.. .+...+-..|.++.|++++.
T Consensus       894 -sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  894 -SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             -CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence             000 011244577888888888888888888999888888888754 46666666788888877764

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.47  E-value=17  Score=33.85  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHhCCChHHHHHhh----c--------CCChHHHHHHHHHHH
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLL----S--------SCCSESQREAALLLG  112 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll----~--------~~~~~~~~~a~~~L~  112 (513)
                      ++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-+.+    .        .+...+...+--+|.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            58999999999999999999999999997655433 2255566555443333    2        233455566666666


Q ss_pred             Hhh
Q 010291          113 QFA  115 (513)
Q Consensus       113 ~l~  115 (513)
                      .++
T Consensus       200 ~L~  202 (282)
T PF10521_consen  200 SLL  202 (282)
T ss_pred             HHH
Confidence            664

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.20  E-value=6.1  Score=32.17  Aligned_cols=71  Identities=10%  Similarity=0.113  Sum_probs=56.4

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~l~~   74 (513)
                      ++..+..-|+++++.++..|+..|-.+..+ .......+...+.+..++.++..      .+..|+...+..+..-+.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            456677788899999999999999988874 35567778888889899999852      467899988888776653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=81.20  E-value=54  Score=33.86  Aligned_cols=171  Identities=16%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             CChHHHHHHHHHHHHhhcCCchhhHHHH---hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc--CChH
Q 010291           99 CCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN--GGLV  173 (513)
Q Consensus        99 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~i~  173 (513)
                      -..+.+.-|.-+|+-+..+....-....   ...++..++..++ .++..+..++++|.|+..++.++..+...  ..+.
T Consensus       556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~  634 (745)
T KOG0301|consen  556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD  634 (745)
T ss_pred             CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence            3445556666666666544333222222   1234555555555 56777888999999999887777665542  1222


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010291          174 PLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY  251 (513)
Q Consensus       174 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~  251 (513)
                      .+.+.-..++..++...+....|++-  ...+                                     .+.+..+.+..
T Consensus       635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~-------------------------------------~~~~~~~~l~~  677 (745)
T KOG0301|consen  635 PVIEASSLSNKNLQIALATLALNYSVLLIQDN-------------------------------------EQLEGKEVLLS  677 (745)
T ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-------------------------------------cccchHHHHHH
Confidence            22222222333444333333333321  1100                                     01112222222


Q ss_pred             HHHH-----hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHH
Q 010291          252 LMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAV  307 (513)
Q Consensus       252 lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~  307 (513)
                      .+..     .+.+....++.||++|+..+.....+.+.-.+..+..-+++ .+.+.....+.
T Consensus       678 ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~  739 (745)
T KOG0301|consen  678 AISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR  739 (745)
T ss_pred             HHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence            2222     23345566778999998877655556565567777776664 33343333333

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.52  E-value=20  Score=33.40  Aligned_cols=70  Identities=17%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhH-HHHHhcCCHHHHH----Hhhc--------CCCHHHHHHHHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLI----LMLR--------SEDSAIHYEAVGVIG   70 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv----~lL~--------~~~~~v~~~a~~~L~   70 (513)
                      .+|.++.++.+.++.++..++.+|..+..+.+... ..+.+.|..+.+-    .+|.        .+...+...|..+|.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            47889999999999999999999999997543333 2355666554443    3443        244567777777887


Q ss_pred             Hhh
Q 010291           71 NLV   73 (513)
Q Consensus        71 ~l~   73 (513)
                      .++
T Consensus       200 ~L~  202 (282)
T PF10521_consen  200 SLL  202 (282)
T ss_pred             HHH
Confidence            774

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=80.40  E-value=64  Score=31.98  Aligned_cols=131  Identities=17%  Similarity=0.233  Sum_probs=93.0

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCC
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKND---ENKNQIVECNALPTLILMLRSE-------DSAIHYEAVGVIGNLVHSS   76 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~   76 (513)
                      .+..+++..+...|..|+....+++++.+   .++..+.+.-+.+.+-++|.+.       +...+..++..|..+|+. 
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence            34556677788889999999999998643   4566677877777888888742       334567788888888876 


Q ss_pred             hhHH--HHHHhCCChHHHHHhhcCC-ChH------HHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC
Q 010291           77 PNIK--KEVLAAGALQPVIGLLSSC-CSE------SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP  141 (513)
Q Consensus        77 ~~~~--~~~~~~g~i~~L~~ll~~~-~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~  141 (513)
                      ++..  +.++  +.||.|+++++.. +++      +...+-.+|..++.. +.....++..|.++.+.++-.-+
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC
Confidence            4331  2222  4688888888752 232      567777788888755 66677888899999998766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-10
3hqi_A	312	Structures Of Spop-Substrate Complexes: Insights In		8e-18
4eoz_A	145	Crystal Structure Of The Spop Btb Domain Complexed		1e-17
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-13
3htm_A	172	Structures Of Spop-Substrate Complexes: Insights In		6e-11
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-10
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		2e-10
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-10
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-09
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-09
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		2e-09
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-06
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-09
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-09
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-09
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		2e-09
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-09
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-06
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		3e-09
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		3e-09
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-09
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		3e-09
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-09
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		3e-09
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-09
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-08
4b8j_A	528	Rimp_alpha1a Length = 528		7e-08
2yns_A	490	Rimp_alpha_b54nls Length = 490		8e-08
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		9e-08
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		5e-06
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-07
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-06
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-07
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		5e-06
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-07
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-06
4ap2_A	297	Crystal Structure Of The Human Klhl11-cul3 Complex		8e-07
1xm9_A	457	Structure Of The Armadillo Repeat Domain Of Plakoph		1e-06
2nn2_A	133	Crystal Structure Of The Btb Domain From The LrfZBT		2e-06
2if5_A	120	Structure Of The Poz Domain Of Human Lrf, A Master		2e-06
3i3n_A	279	Crystal Structure Of The Btb-Back Domains Of Human		3e-06
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		5e-06
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		5e-06
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		7e-06
3ltm_A	211	Structure Of A New Family Of Artificial Alpha Helic		2e-05
3ltj_A	201	Structure Of A New Family Of Artificial Alpha Helic		2e-05
1buo_A	121	Btb Domain From Plzf Length = 121		2e-04
1cs3_A	116	Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN		2e-04
3m8v_A	124	Crystal Structure Of The Btb Domain From KaisoZBTB3		2e-04
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		2e-04
3tt9_A	233	Crystal Structure Of The Stable Degradation Fragmen		3e-04
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		4e-04
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		4e-04
3fkc_A	116	Crystal Structure Of Human Zinc Finger And Btb Doma		5e-04
3ga1_A	129	Crystal Structure Of The Human Nac1 Poz Domain Leng		6e-04
2z8h_A	138	Structure Of Mouse Bach1 Btb Domain Length = 138		6e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 1/196 (0%)
Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
           GG+  LV+LL  TD++VQ+ AA AL  +A   DE    IV+   +  L+ +L S DS + 
Sbjct: 44  GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 103
Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
            EA   + N+        K ++ AG ++ ++ LL+S  SE Q+EAA  L   A+   +  
Sbjct: 104 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163
Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS 181
             IV  G V  L+++L S D ++++ +A AL  +A    +    I   GG+  L KLL S
Sbjct: 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223
Query: 182 KNGSLQHNAAFALYGL 197
            +  +Q  A  AL  +
Sbjct: 224 TDSEVQKEAQRALENI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 89  LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 148
           ++ ++ LL+S  SE+Q+EAA  L + A+  +     IV  G V  L+++L S D ++++ 
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 149 SAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VA 205
           +A AL  +A   D   +A I   GG+  L+KLL S +  +Q  AA AL  +A   D  + 
Sbjct: 64  AARALANIASGPDEAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 206 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 265
             +  GGV+                                  L+ L+   +  VQ+  A
Sbjct: 123 AIVDAGGVE---------------------------------VLVKLLTSTDSEVQKEAA 149
Query: 266 LALAHLCS-PDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATT 318
            ALA++ S PD+     +D            ST+ + Q + A AL  +A+  T+
Sbjct: 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203

>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 331 PQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 387
           P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 388 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 447
           EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+EN
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 448 VSSMYELSEAFHAISLRHTCILYIMEH 474
            + +  L++   A  L+   + +I  H
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYH 303

>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 330 TPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 386
            P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     
Sbjct: 7   VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR 66
Query: 387 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 446
           +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+E
Sbjct: 67  VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126
Query: 447 NVSSMYELSEAFHAISLR 464
           N + +  L++   A  L+
Sbjct: 127 NAAEILILADLHSADQLK 144

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
           G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 181
             ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 182 KNGSLQHNAAFALYGL 197
           +N  +Q  A  AL  L
Sbjct: 234 ENEKIQKEAQEALEKL 249

>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 331 PQVYLGDQ---FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 387
           P+  L D+      N+  +D    V G+ F AH+  L A S  F A F+    E     +
Sbjct: 17  PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV 76
Query: 388 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 447
           EI ++  EVF+    FIYTG        A DLL AAD+Y LE LK  CE  +  ++S+EN
Sbjct: 77  EINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVEN 136
Query: 448 VSSMYELSEAFHAISLRHTCILYIMEH 474
            + +  L++   A  L+   + +I  H
Sbjct: 137 AAEILILADLHSADQLKTQAVDFINYH 163

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-N 183
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q       G  P L+ L S  N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 184 GSLQHNAAFAL 194
             +Q  A  AL
Sbjct: 194 EKIQKEAQEAL 204

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 183
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 184 GSLQHNAAFALYGL 197
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P + + L   D + Q +A      +    +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 183
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 184 GSLQHNAAFALYGL 197
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 428
Query: 179 LDSKN 183
           L +K+
Sbjct: 429 LSAKD 433

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 218 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 277
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 278 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 337
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 338 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 393
Query: 179 LDSKN 183
           L +K+
Sbjct: 394 LSAKD 398

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
           L +K+
Sbjct: 410 LSAKD 414

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 21  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 76  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 80  KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 189 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 238
           ++ +A+  L D  +           V   +++ G  +L      ++A  + V  T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
           + I    L     L+   +  +Q+     ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 206 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 265
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 266 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 325
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 326 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 381
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 382 LMNLLSAKD 390

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 359
Query: 179 LDSKN 183
           L +K+
Sbjct: 360 LSAKD 364

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 220 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 279
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 280 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 340 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 395
Query: 179 LDSKN 183
           L +K+
Sbjct: 396 LSAKD 400

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 180 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 239
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 240 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 299
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 300 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 355
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 356 LMNLLSAKD 364

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
           L +K+
Sbjct: 410 LSAKD 414

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 21  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 76  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 80  KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 189 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 238
           ++ +A+  L D  +           V   +++ G  +L      ++A  + V  T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
           + I    L     L+   +  +Q+     ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 358
Query: 179 LDSKN 183
           L +K+
Sbjct: 359 LSAKD 363

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 179 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 238
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 239 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 298
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 299 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 354
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 355 LMNLLSAKD 363

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
           L +K+
Sbjct: 410 LSAKD 414

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + PL+ L
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 365
Query: 179 LDSKN 183
           L +K+
Sbjct: 366 LSAKD 370

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 175 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 234
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 235 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 294
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 295 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 350
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 351 LMNLLSAKD 359

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 180 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 239
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 240 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 299
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 300 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 355
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 356 LMNLLSAKD 364

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 175 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 234
Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 235 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 294
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
               +V  G V  L+ +L   D + ++ +A+A+      G + Q ++    + H G + P
Sbjct: 295 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 350
Query: 175 LLKLLDSKN 183
           L+ LL +K+
Sbjct: 351 LMNLLSAKD 359

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +P LV LL   D +V      A+  L    +E    +V+   +P L+ +L + +  I   
Sbjct: 185 LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTP 244
Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A+  IGN+V  +    + V+ AGAL     LL++  +  Q+EA   +    A   D    
Sbjct: 245 ALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
           +V  G V  L+ +L   D + ++ + +A+      G + Q ++    + H G + PL+ L
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY----LVHCGIIEPLMNL 360
Query: 179 LDSKN 183
           L +K+
Sbjct: 361 LTAKD 365

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 3   GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A+P  + +L S    +
Sbjct: 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDV 176
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLLGQFAATDSD 120
             +AV  +GN+   SP  +  VLA GAL P++  L+     S  R A   L  F      
Sbjct: 177 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLL 179
                  R A+  L  ++ S D ++   + +AL  L+   +++       G+ P L++LL
Sbjct: 237 PSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 3   GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A+P  + +L S    +
Sbjct: 79  GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDV 138
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLLGQFAATDSD 120
             +AV  +GN+   SP  +  VLA GAL P++  L+     S  R A   L  F      
Sbjct: 139 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 198
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLL 179
                  R A+  L  ++ S D ++   + +AL  L+   +++       G+ P L++LL
Sbjct: 199 PSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 257

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
            +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + +  
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 230
Query: 64  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
            A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++   
Sbjct: 231 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
            ++    + PL+++L+  + + ++ + +A+   +     +  I       G + PL  LL
Sbjct: 291 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 350
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
           +  +  +      AL      G AD E      +  ADFI + GG++K+
Sbjct: 351 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 43  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
            +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + +  
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 230
Query: 64  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
            A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++   
Sbjct: 231 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
            ++    + PL+++L+  + + ++ + +A+   +     +  I       G + PL  LL
Sbjct: 291 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 350
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
           +  +  +      AL      G AD E      +  ADFI + GG++K+
Sbjct: 351 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 43  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
            +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + +  
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 231
Query: 64  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
            A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++   
Sbjct: 232 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
            ++    + PL+++L+  + + ++ + +A+   +     +  I       G + PL  LL
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 351
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
           +  +  +      AL      G AD E      +  ADFI + GG++K+
Sbjct: 352 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 44  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
            +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + +  
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 231
Query: 64  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
            A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++   
Sbjct: 232 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
            ++    + PL+++L+  + + ++ + +A+   +     +  I       G + PL  LL
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 351
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
           +  +  +      AL      G AD E      +  ADFI + GG++K+
Sbjct: 352 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 44  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335

>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 407
           GR F AHR  L A+++ F  +  G + E  +  +E+      P    +  E ++ ++YTG
Sbjct: 62  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
            + V+     ++L  AD++LL  LK  C   + + + L N  +++ L+  +
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172

>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1 Length = 457

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA-I 61
           GGI  LV+LL   +  VQ+AAAGALR L F++  NK +    N +   + +LR   +A I
Sbjct: 44  GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93
             +  G++ NL  SS +  KE L A AL PV+
Sbjct: 104 QKQLTGLLWNL--SSTDELKEELIADAL-PVL 132

>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 35  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 95  YTATLTVSTANVGDILSAARLLEIPAVSHVC 125

>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 407
           GR F AHR  L A+++ F  +  G + E  +  +E       P    +  E ++ + YTG
Sbjct: 44  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
            + V+     ++L  AD++LL  LK  C   + + + L N  +++ L+  +
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXY 154

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 42  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 42  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 308
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 366
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 19  VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78
           V+RAAA AL            +I +  A+  LI  L+ ED+ +   A   +G +      
Sbjct: 35  VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 79  IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 138
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 82  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 139 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
           +  D  +R  +AFALG +  +            + PL+K L  ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 43/176 (24%)
Query: 19  VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78
           V+RAAA AL            +I +  A+  LI  L+ ED+ +   A   +G +      
Sbjct: 30  VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 79  IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 138
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 77  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 139 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
           +  D  +R  +AFALG           I     + PL+K L  ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162

>pdb|1BUO|A Chain A, Btb Domain From Plzf Length = 121

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 326 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 385
           P  PT  +   +Q     TL DV  +V+ + F+AHR  L  +S  F  +F      ++++
Sbjct: 9   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 386 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 423
              +  +  + F+ ++ + YT ++    +   DLL AA
Sbjct: 64  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101

>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM PROMELOCYTIC Leukemia Zinc Finger Oncoprotein Length = 116

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 326 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 385
           P  PT  +   +Q     TL DV  +V+ + F+AHR  L  +S  F  +F      ++++
Sbjct: 8   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 386 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 423
              +  +  + F+ ++ + YT ++    +   DLL AA
Sbjct: 63  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100

>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
           DVT +VE R+F AH+  L ASS  F  +F         + +E+  IR E+F  ++ +IY+
Sbjct: 35  DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 407 GS-VDVTLDIAQDLLRAADQYLLEGLKRLCE 436
              V V  D+  +L+++     L G+K + E
Sbjct: 90  SKIVRVRSDLLDELIKSGQ---LLGVKFIAE 117

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 4   GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR-SEDSAI 61
           GIP LV LL+    +V   A GAL+ ++F  D+ NK  I  C+ +P L+ +LR + D  +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 62  HYEAVGVIGNLVHSSPNIKKEVL 84
                G + NL  S  +IK E++
Sbjct: 151 TEVITGTLWNL-SSHDSIKMEIV 172

>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 19  VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 77
           VQRA  GALR L F++++NK ++ E N +P L+ +L+ + D     +  G++ NL  SS 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSN 125
Query: 78  NIKKEVLAAGAL 89
           +  K ++   AL
Sbjct: 126 DKLKNLMITEAL 137

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 8   LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 62
           ++E++     + Q +A    R L  K  E    I E  + P ++      + R E+  + 
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 79
Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
           +E+  V+ N+   +    + V+ AGA+   I LLSS   + Q +A   LG  A   + C+
Sbjct: 80  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 139
Query: 123 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 180
            +++    + PL+++    + + +   + +AL  L +        A     + +L  LL 
Sbjct: 140 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 199
Query: 181 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 216
             +  +  +A +AL  L+D   D +   I  G  ++L
Sbjct: 200 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 8   LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 62
           ++E++     + Q +A    R L  K  E    I E  + P ++      + R E+  + 
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
           +E+  V+ N+   +    + V+ AGA+   I LLSS   + Q +A   LG  A   + C+
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 123 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 180
            +++    + PL+++    + + +   + +AL  L +        A     + +L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 181 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 216
             +  +  +A +AL  L+D   D +   I  G  ++L
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
           DVT +VE R+F AH+  L ASS  F  +F         + +E+  IR E+F  ++ +IY+
Sbjct: 33  DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 407 GS-VDVTLDIAQDLLRAA 423
              V V  D+  +L+++ 
Sbjct: 88  SKIVRVRSDLLDELIKSG 105

>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIY 405
           DV+ +V+G  F AHR  L ASS  FR +F+       +  +E+P  ++ + F+ ++ F Y
Sbjct: 35  DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 406 TGSVDVTLDIAQDLLRAADQYL 427
           TG + + +   QDLL     +L
Sbjct: 91  TGRLSMNVG-DQDLLMYTAGFL 111

>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR-DIEIP-NIRWEVFELMMR 402
           L DVT LVEG+RF AHR  L A S  F +   G   + DA   + +P  +  + FE +++
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 403 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           F YT  + ++ D   ++ R  +   +  ++  C
Sbjct: 93  FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-52
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-43
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-43
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-33
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-62
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-45
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-40
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-45
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-60
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-50
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-55
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	1e-49
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-49
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-39
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-33
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-27
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-48
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-39
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-21
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-37
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-23
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-45
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-42
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-35
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-43
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-40
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-40
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-39
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-37
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-30
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	1e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-34
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-24
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-34
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-26
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-14
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-34
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-33
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-05
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	7e-32
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	4e-29
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-25
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-13
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	1e-24
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	3e-24
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	1e-22
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	3e-22
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	3e-22
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	3e-22
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	3e-22
2vpk_A	116	Myoneurin; transcription regulation, transcription	8e-22
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	9e-22
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	1e-19
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-19
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	1e-19
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	4e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-14
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-11
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-11
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	6e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  217 bits (555), Expect = 1e-64
 Identities = 66/332 (19%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 2   EGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
              +  +V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   +
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           + + A+  + NL+      K  V  AG LQ ++ LL+    +        L   A  + +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 121 CKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
            K+ I+  G  + L+ ++++    +L   ++  L  L+    N+  I   GG+  L   L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLK 235
              +  L  N  + L  L+D           G +  L       +  V     C A  L 
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVT---CAAGILS 291

Query: 236 RL--------EEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDD----QRTIF 281
            L                +  L+  +  A   + +      AL HL S        +   
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351

Query: 282 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
               GL +++ LL   +    +   V L +  
Sbjct: 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  183 bits (467), Expect = 5e-52
 Identities = 59/326 (18%), Positives = 114/326 (34%), Gaps = 19/326 (5%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAI 61
             IP L +LL   D  V   AA  +  L+ K       +     +  ++  M  + D   
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
                G + NL H        +  +G +  ++ +L S        A   L          
Sbjct: 77  ARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLKLLD 180
           K+ +   G ++ ++ +L   +V+   ++   L  LA  +  ++  I  +GG   L+ ++ 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 181 SKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLK 235
           +     L    +  L  L+    N    +  GG+Q L     D    +         TL+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV---QNCLWTLR 252

Query: 236 RLEEKIHGR-----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI-DGGGLEL 289
            L +    +     +L  L+ L+   +  V    A  L++L   + +  + +   GG+E 
Sbjct: 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 290 LLGLL--GSTNPKQQLDGAVALFKLA 313
           L+  +               AL  L 
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLT 338

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  161 bits (408), Expect = 1e-43
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 27/245 (11%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SED 58
           MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  +    + 
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 59  SAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115
             I   A+  + +L          +  V     L  V+ LL         +A + L +  
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 116 ATDSDCKVHIVQRGAVRPLIEMLQSPD----------------------VQLREMSAFAL 153
           A        + ++GA+  L+++L                           ++ E    AL
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443

Query: 154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 213
             LA+D+HN+  I     +   ++LL S   ++Q  AA  L  LA +++        G  
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503

Query: 214 QKLQD 218
             L +
Sbjct: 504 APLTE 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  158 bits (402), Expect = 7e-43
 Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 22/302 (7%)

Query: 26  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85
           A+  L    +   +  +   A+P L  +L  ED  +  +A  ++  L     +    + +
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 86  AGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 144
              +  ++  + +    E+ R  A  L   +    +  + I + G +  L++ML SP   
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 145 LREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNED 202
           +   +   L  L       +  +   GGL  ++ LL+  N          L  LA  N++
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 203 NVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLKRL-------EEKIHGRVLNHLLY 251
           +    +  GG Q L    +   +         ++ LK L          +    +  L  
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKL--LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234

Query: 252 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 311
            +    + + +     L +L   D         G L  L+ LLGS +       A  L  
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 312 LA 313
           L 
Sbjct: 293 LT 294

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  132 bits (333), Expect = 2e-33
 Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 26/223 (11%)

Query: 2   EGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQ---IVECNALPTLILMLRS 56
            GGI  LV  +        +   A  ALR L  ++ E +     +     LP ++ +L  
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366

Query: 57  EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA- 115
                  +A   +   +   P     +   GA+  ++ LL     ++QR  ++   Q   
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

Query: 116 --------------------ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 155
                               A D   ++ I     +   +++L SP   ++ ++A  L  
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486

Query: 156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198
           LAQD      I   G   PL +LL S+N  +   AA  L+ ++
Sbjct: 487 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  216 bits (550), Expect = 5e-62
 Identities = 67/330 (20%), Positives = 122/330 (36%), Gaps = 22/330 (6%)

Query: 2   EGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
              +  +V  ++ T D +  R  +G L  L+  + E    I +   +P L+ ML S   +
Sbjct: 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDS 249

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           + + A+  + NL+      K  V  AG LQ ++ LL+    +        L   A  + +
Sbjct: 250 VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309

Query: 121 CKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
            K+ I+  G  + L+ ++++    +L   ++  L  L+    N+  I   GG+  L   L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369

Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGG--VQKLQDGEFIVQATKDCVAKTLKRL 237
              +  L  N  + L  L+D          + G  VQ L   +  V     C A  L  L
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT---CAAGILSNL 426

Query: 238 --------EEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCS----PDDQRTIFID 283
                           +  L+  +  A   + +      AL HL S     +  +     
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 284 GGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
             GL +++ LL   +    +   V L +  
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  175 bits (445), Expect = 1e-47
 Identities = 59/325 (18%), Positives = 106/325 (32%), Gaps = 34/325 (10%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            GG+  L   L     ++ +     LR L+   D    Q      L TL+ +L S+D  +
Sbjct: 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINV 415

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDS 119
              A G++ NL  ++   K  V   G ++ ++  +       +    A   L    +   
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 120 DCKVH---IVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAGIAHNGGLVPL 175
           D ++    +     +  ++++L  P       +   L R LA    N A +   G +  L
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 535

Query: 176 LKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 235
           ++LL   +   Q   +         E                     ++   +     L 
Sbjct: 536 VQLLVRAHQDTQRRTSMGGTQQQFVEG------------------VRMEEIVEACTGALH 577

Query: 236 RLEEKIHGR-------VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 288
            L   IH R        +   + L+    + +QR  A  L  L    +        G   
Sbjct: 578 ILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 637

Query: 289 LLLGLLGSTNPKQQLDGAVALFKLA 313
            L  LL S N       A  LF+++
Sbjct: 638 PLTELLHSRNEGVATYAAAVLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  169 bits (428), Expect = 3e-45
 Identities = 57/328 (17%), Positives = 107/328 (32%), Gaps = 20/328 (6%)

Query: 2   EGGIPPLVELLEFTDTKVQRAA--AGALRTLAFK-NDENKNQIVECNALPTLILMLRSED 58
           EG   P  +      T VQR A  +  L+       +   +  +   A+P L  +L  ED
Sbjct: 104 EGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED 163

Query: 59  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
             +  +A  ++  L     +    + +   +  ++  + +                 +  
Sbjct: 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLK 177
            +  + I + G +  L+ ML SP   +   +   L  L       +  +   GGL  ++ 
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283

Query: 178 LLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAK 232
           LL+  N          L  LA  N+++    +  GG Q L    +   +         ++
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL--LWTTSR 341

Query: 233 TLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 285
            LK L          +    +  L   +    + + +     L +L   D         G
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEG 399

Query: 286 GLELLLGLLGSTNPKQQLDGAVALFKLA 313
            L  L+ LLGS +       A  L  L 
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLT 427

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  153 bits (388), Expect = 5e-40
 Identities = 64/336 (19%), Positives = 111/336 (33%), Gaps = 62/336 (18%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SED 58
           MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  +    + 
Sbjct: 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456

Query: 59  SAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115
             I   A+  + +L     +    +  V     L  V+ LL         +A + L +  
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 116 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR----------------------EMSAFAL 153
           A        + ++GA+  L+++L       +                      E    AL
Sbjct: 517 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576

Query: 154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 213
             LA+D+HN+  I     +   ++LL S   ++Q  AA  L  LA +++        G  
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 636

Query: 214 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
             L +                                 L+    +GV    A  L  +  
Sbjct: 637 APLTE---------------------------------LLHSRNEGVATYAAAVLFRMS- 662

Query: 274 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
            +D+   +     +EL   L  +        G + L
Sbjct: 663 -EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 86.2 bits (213), Expect = 6e-18
 Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 2   EGGIPPLVELLEFTDTKVQR----------------------AAAGALRTLAFKNDENKN 39
           +G IP LV+LL       QR                      A  GAL  LA ++  N+ 
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRI 587

Query: 40  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 99
            I   N +P  + +L S    I   A GV+  L        + + A GA  P+  LL S 
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSR 646

Query: 100 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQ 158
                  AA +L + +      K    ++     L   L   + +   E     L   AQ
Sbjct: 647 NEGVATYAAAVLFRMSED----KPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQ 702

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (541), Expect = 1e-61
 Identities = 66/332 (19%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 2   EGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
              +  +V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   +
Sbjct: 55  PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 113

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           + + A+  + NL+      K  V  AG LQ ++ LL+    +        L   A  + +
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 121 CKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
            K+ I+  G  + L+ ++++    +L   ++  L  L+    N+  I   GG+  L   L
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLK 235
              +  L  N  + L  L+D           G +  L       +  V     C A  L 
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVT---CAAGILS 288

Query: 236 RL--------EEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDD----QRTIF 281
            L                +  L+  +  A   + +      AL HL S        +   
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348

Query: 282 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
               GL +++ LL   +    +   V L +  
Sbjct: 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  182 bits (464), Expect = 8e-51
 Identities = 60/338 (17%), Positives = 116/338 (34%), Gaps = 19/338 (5%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAI 61
             IP L +LL   D  V   AA  +  L+ K       +     +  ++  M  + D   
Sbjct: 14  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 73

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
                G + NL H        +  +G +  ++ +L S        A   L          
Sbjct: 74  ARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLD 180
           K+ +   G ++ ++ +L   +V+   ++   L  LA  +  ++  I  +GG   L+ ++ 
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 181 SKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLK 235
           +     L    +  L  L+    N    +  GG+Q L     D    +         TL+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV---QNCLWTLR 249

Query: 236 RLEEKIHGR-----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLEL 289
            L +    +     +L  L+ L+   +  V    A  L++L   +   + +    GG+E 
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 290 LLGLL--GSTNPKQQLDGAVALFKLANKATTLSSVDAA 325
           L+  +               AL  L ++         A
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  166 bits (421), Expect = 8e-45
 Identities = 56/318 (17%), Positives = 104/318 (32%), Gaps = 20/318 (6%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            GG+  L   L     ++ +     LR L+   D    Q      L TL+ +L S+D  +
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINV 279

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDS 119
              A G++ NL  ++   K  V   G ++ ++  +       +    A   L    +   
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 120 DCKVH---IVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAGIAHNGGLVPL 175
           + ++    +     +  ++++L  P       +   L R LA    N A +   G +  L
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399

Query: 176 LKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 235
           ++LL   +   Q   +         E    + I  G    L          +  +     
Sbjct: 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRG--- 455

Query: 236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 295
                     +   + L+    + +QR  A  L  L    +        G    L  LL 
Sbjct: 456 -------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 508

Query: 296 STNPKQQLDGAVALFKLA 313
           S N       A  LF+++
Sbjct: 509 SRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  161 bits (409), Expect = 3e-43
 Identities = 64/340 (18%), Positives = 109/340 (32%), Gaps = 62/340 (18%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SED 58
           MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  +    + 
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 59  SAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115
             I   A+  + +L          +  V     L  V+ LL         +A + L +  
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 116 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR----------------------EMSAFAL 153
           A        + ++GA+  L+++L       +                      E    AL
Sbjct: 381 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 440

Query: 154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 213
             LA+D+HN+  I     +   ++LL S   ++Q  AA  L  LA +++        G  
Sbjct: 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 500

Query: 214 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
             L +                                 L+    +GV    A  L  +  
Sbjct: 501 APLTE---------------------------------LLHSRNEGVATYAAAVLFRMSE 527

Query: 274 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
             D+   +     +EL   L  +          + L   A
Sbjct: 528 --DKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGA 565

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  156 bits (395), Expect = 3e-41
 Identities = 52/293 (17%), Positives = 101/293 (34%), Gaps = 19/293 (6%)

Query: 35  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 94
           +   +  +   A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 95  LLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
            + +    E+ R  A  L   +    +  + I + G +  L++ML SP   +   +   L
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 154 GRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVG 211
             L       +  +   GGL  ++ LL+  N          L  LA  N+++    +  G
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 212 GVQKL----QDGEFIVQATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGV 260
           G Q L    +   +         ++ LK L          +    +  L   +    + +
Sbjct: 183 GPQALVNIMRTYTYEKL--LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 240

Query: 261 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
            +     L +L   D         G L  L+ LLGS +       A  L  L 
Sbjct: 241 VQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  196 bits (500), Expect = 4e-60
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
             +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 181
             ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191

Query: 182 KNGSLQHNAAFALYGLADN 200
           +N  +Q  A  AL  L  +
Sbjct: 192 ENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  119 bits (301), Expect = 2e-31
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 36  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 95
            + +     + LP ++  L S D      A+  +  +        + V+ AGAL  ++ L
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 96  LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 155
           LSS   +  +EA   L   A+  ++    ++  GA+  L+++L SP+ Q+ + + +AL  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 156 LAQDMHNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGV 213
           +A   + Q   +   G L  L++LL S N  +   A +AL  +A    +        G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 214 QKL 216
           +KL
Sbjct: 183 EKL 185

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  111 bits (281), Expect = 1e-28
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 36/237 (15%)

Query: 80  KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
                    L  ++  L+S   +  + A   L Q A+  ++    ++  GA+  L+++L 
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 140 SPDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198
           SP+ Q+ + + +AL  +A   + Q   +   G L  L++LL S N  +   A +AL  +A
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 199 -DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 257
               + +   I  G +                                   L+ L+    
Sbjct: 125 SGGNEQIQAVIDAGALP---------------------------------ALVQLLSSPN 151

Query: 258 KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
           + + +    AL+++ S  ++Q+    + G LE L  L    N K Q +   AL KL 
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            G +P LV+LL   + ++ + A  AL  +A   +E K  + E  AL  L  +   E+  I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196

Query: 62  HYEAVGVIGNL 72
             EA   +  L
Sbjct: 197 QKEAQEALEKL 207

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  189 bits (483), Expect = 4e-57
 Identities = 55/200 (27%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I
Sbjct: 53  AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ 
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLD 180
              ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L  
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232

Query: 181 SKNGSLQHNAAFALYGLADN 200
            +N  +Q  A  AL  L  +
Sbjct: 233 HENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  170 bits (434), Expect = 5e-50
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
             +P + + L   D + Q +A      +    +E    +++  ALP L+ +L S +  I 
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDS 181
             ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L++LL S
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191

Query: 182 KNGSLQHNAAFALYGLADNEDNVADFI-RVGGVQKL 216
            N  +   A +AL  +A   +     +   G ++KL
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score =  182 bits (464), Expect = 2e-55
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 316 ATTLSSVDAAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFR 372
           +      +       P+  L D+      N+  +D    V G+ F AH+  L A S  F 
Sbjct: 2   SGGSGGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61

Query: 373 AMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 432
           AMF+    E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK
Sbjct: 62  AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 121

Query: 433 RLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 483
            +CE  +  ++S+EN + +  L++   A  L+   + +I  H   +    G
Sbjct: 122 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score =  166 bits (423), Expect = 1e-49
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 324 AAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR 380
            +     P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    
Sbjct: 1   GSNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 60

Query: 381 EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIA 440
           E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  + 
Sbjct: 61  ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 120

Query: 441 QDISLENVSSMYELSEAFHAISLR 464
            ++S+EN + +  L++   A  L+
Sbjct: 121 SNLSVENAAEILILADLHSADQLK 144

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score =  171 bits (436), Expect = 1e-49
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 317 TTLSSVDAAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA 373
             +S  +       P+  L D+      N+  +D    V G+ F AH+  L A S  F A
Sbjct: 143 VNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA 202

Query: 374 MFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKR 433
           MF+    E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK 
Sbjct: 203 MFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKV 262

Query: 434 LCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDK 477
           +CE  +  ++S+EN + +  L++   A  L+   + +I  H   
Sbjct: 263 MCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATD 306

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  170 bits (431), Expect = 2e-48
 Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 11/214 (5%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI-LMLRSED 58
           M+G +  LV  L+     +Q+  A  LR L+++ +  +K  + E  ++  L+   L  + 
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184

Query: 59  SAIHYEAVGVIGNL-VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL------- 110
            +     +  + NL  H + N        GAL  ++G L+     +              
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244

Query: 111 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHN 169
           +    AT+ D +  + +   ++ L++ L+S  + +   +   L  L A++  +Q  +   
Sbjct: 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304

Query: 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 203
           G +  L  L+ SK+  +   +A AL  L  N   
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  145 bits (368), Expect = 2e-39
 Identities = 54/337 (16%), Positives = 111/337 (32%), Gaps = 59/337 (17%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---- 57
           E G+      +          A   L  L+F ++E+++ + E   L  +  +L+ +    
Sbjct: 31  EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMY 89

Query: 58  -------DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAAL 109
                     +   A   + NL       K  + +  G ++ ++  L S   + Q+  A 
Sbjct: 90  GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149

Query: 110 LLGQFAA-TDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMH-NQAGI 166
           +L   +   D + K  + + G+V+ L+E   +       +    AL  L+     N+A I
Sbjct: 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209

Query: 167 AHNGGLVP-LLKLLDSKNGS----LQHNAAFALYGL----ADNEDNVADFIRVGGVQKLQ 217
               G +  L+  L  ++ +    +  +    L  +    A NED+         +Q   
Sbjct: 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ--- 266

Query: 218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-D 276
                                          LL  ++     +       L +L + +  
Sbjct: 267 ------------------------------TLLQHLKSHSLTIVSNACGTLWNLSARNPK 296

Query: 277 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
            +    D G + +L  L+ S +    +  A AL  L 
Sbjct: 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  129 bits (327), Expect = 1e-33
 Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 53/318 (16%)

Query: 20  QRAAAGALRTL----AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
                  L  L    A+     + Q      +      + +        AV V+  L   
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62

Query: 76  SPNIKKEVLAAGALQPVIGLLSS-----------CCSESQREAALLLGQFAATDSDCKVH 124
             + +  +   G LQ +  LL                  +R A + L      D   K  
Sbjct: 63  EEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121

Query: 125 IVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLA--QDMHNQAGIAHNGGLVPLLKLL-D 180
           +    G +R L+  L+S    L+++ A  L  L+   D++++  +   G +  L++   +
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181

Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 239
            K  S   +   AL+ L+    +N AD   V G                           
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALA------------------------ 217

Query: 240 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS----PDDQRTIFIDGGGLELLLGLLG 295
                ++  L Y  +     +       L ++ S     +D R I  +   L+ LL  L 
Sbjct: 218 ----FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273

Query: 296 STNPKQQLDGAVALFKLA 313
           S +     +    L+ L+
Sbjct: 274 SHSLTIVSNACGTLWNLS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (283), Expect = 1e-27
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 12/185 (6%)

Query: 2   EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILML----R 55
            G +  L+E   E       ++   AL  L+    ENK  I     AL  L+  L    +
Sbjct: 169 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 228

Query: 56  SEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 112
           +   AI     G++ N+     ++ + ++ +     LQ ++  L S        A   L 
Sbjct: 229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288

Query: 113 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD---MHNQAGIAHN 169
             +A +   +  +   GAV  L  ++ S    +   SA AL  L  +    +  A I   
Sbjct: 289 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSP 348

Query: 170 GGLVP 174
           G  +P
Sbjct: 349 GSSLP 353

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  173 bits (440), Expect = 3e-48
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 14/259 (5%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQAGIAHNGGLVPLLKL 178
               +V  G V  L+ +L   D + ++ +A+A+        +     + H G + PL+ L
Sbjct: 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409

Query: 179 LDSKNGSLQHNAAFALYGLADNEDNVAD-------FIRVGGVQKLQ-----DGEFIVQAT 226
           L +K+  +      A+  +    + + +           GG+ K++     + E + +A+
Sbjct: 410 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 469

Query: 227 KDCVAKTLKRLEEKIHGRV 245
            + + K     EE+    V
Sbjct: 470 LNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  156 bits (395), Expect = 4e-42
 Identities = 68/343 (19%), Positives = 132/343 (38%), Gaps = 19/343 (5%)

Query: 2   EGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
            G IP  V  L  TD + +Q  +A AL  +A    E    +V+  A+P  I +L S  + 
Sbjct: 99  AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH 158

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-----REAALLLGQFA 115
           I  +AV  +GN+       +  V+  GA+ P++ LL+     +      R     L    
Sbjct: 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218

Query: 116 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP- 174
              +           +  L+ +L   D ++   S +A+  L    + +  +    G+VP 
Sbjct: 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ 278

Query: 175 LLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL------QDGEFIVQATK 227
           L+KLL +    +   A  A+  +    ++     I  G +                +AT 
Sbjct: 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 228 D---CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDDQRTIFI 282
                 A    ++++ ++  ++  L+ ++  A+   Q+  A A+ +  S    +Q    +
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398

Query: 283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAA 325
             G +E L+ LL + + K       A+  +   A  L   +  
Sbjct: 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 441

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  148 bits (375), Expect = 3e-39
 Identities = 62/335 (18%), Positives = 140/335 (41%), Gaps = 19/335 (5%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLI-LMLRSEDS 59
              +  +V+ +   + + Q  A  A R L  +  +   + I+    +P  +  + +++ S
Sbjct: 56  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 115

Query: 60  AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
            I +E+   + N+   +    K V+  GA+   I LL+S  +    +A   LG  A   S
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175

Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA-----LGRLAQDMHNQAGIAHNGGLVP 174
             +  +++ GA+ PL+ +L  PD+              L  L ++ +    +     ++P
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235

Query: 175 LL-KLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL------QDGEFIVQAT 226
            L +LL   +  +  ++ +A+  L D   + +   ++ G V +L       +   +  A 
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295

Query: 227 K---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFI 282
           +   + V  T ++ ++ I    L     L+   +  +Q+     ++++ +   DQ    +
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355

Query: 283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317
           + G +  L+G+L   + K Q + A A+    +  T
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  127 bits (319), Expect = 1e-31
 Identities = 60/317 (18%), Positives = 112/317 (35%), Gaps = 19/317 (5%)

Query: 16  DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
              +     G         D   NQ     ++  ++  + S +     +A      L+  
Sbjct: 28  RQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 87

Query: 76  SPN-IKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 133
                   ++ AG +   +  L  + CS  Q E+A  L   A+  S+    +V  GA+  
Sbjct: 88  EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 147

Query: 134 LIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNG-----SLQ 187
            I +L SP   + E + +ALG +A D    +  +  +G + PLL LL   +         
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

Query: 188 HNAAFALYGLADNEDNVADFIRVGGVQKL-------QDGEFIVQAT---KDCVAKTLKRL 237
            N  + L  L  N++       V  +           D E +  +            +R+
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267

Query: 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS 296
           E  +   V+  L+ L+   E  +      A+ ++ +  D+Q    ID G L +   LL +
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327

Query: 297 TNPKQQLDGAVALFKLA 313
                Q +    +  + 
Sbjct: 328 PKTNIQKEATWTMSNIT 344

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  125 bits (316), Expect = 2e-31
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 34/306 (11%)

Query: 3   GGIPPLVELLEFTDT-----KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 57
           G I PL+ LL   D         R     L  L    +           LPTL+ +L   
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244

Query: 58  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 117
           D  +  ++   I  L        + V+  G +  ++ LL +        A   +G     
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304

Query: 118 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL-L 176
             +    ++  GA+     +L +P   +++ + + +  +     +Q     N GLVP  +
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364

Query: 177 KLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 234
            +L   +   Q  AA+A+         + +   +  G ++ L +               L
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN--------------LL 410

Query: 235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 294
              + KI   +L+ +  + + AEK            L   +    +  + GGL+ +  L 
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEK------------LGETEKLSIMIEECGGLDKIEALQ 458

Query: 295 GSTNPK 300
              N  
Sbjct: 459 RHENES 464

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 95.5 bits (237), Expect = 4e-21
 Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 21/279 (7%)

Query: 55  RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 114
           + E   +    +G   +    +     +     +++ ++  ++S   ESQ +A     + 
Sbjct: 25  KFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84

Query: 115 AATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAG-IAHNGG 171
            + +      +I++ G +   +  L  +    ++  SA+AL  +A     Q   +   G 
Sbjct: 85  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144

Query: 172 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG-----VQKLQDGEFIVQAT 226
           +   + LL S +  +   A +AL  +A +     D +   G     +  L   +    A 
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204

Query: 227 K-----------DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SP 274
                        C  K      + +   +L  L+ L+   +  V      A+++L   P
Sbjct: 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQ-ILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 275 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
           +++  + +  G +  L+ LLG+T          A+  + 
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  171 bits (434), Expect = 7e-48
 Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 11/214 (5%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI-LMLRSED 58
           M+G +  LV  L+     +Q+  A  LR L+++ +  +K  + E  ++  L+   L  + 
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300

Query: 59  SAIHYEAVGVIGNL-VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL------- 110
            +     +  + NL  H + N        GAL  ++G L+     +              
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360

Query: 111 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHN 169
           +    AT+ D +  + +   ++ L++ L+S  + +   +   L  L A++  +Q  +   
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420

Query: 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 203
           G +  L  L+ SK+  +   +A AL  L  N   
Sbjct: 421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  141 bits (357), Expect = 4e-37
 Identities = 67/381 (17%), Positives = 124/381 (32%), Gaps = 71/381 (18%)

Query: 3   GGIPPLVELLEFTD------------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 50
           G +P L++LL   D             + +  A+ AL  +     ++K    E   L  L
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 51  ------------------------ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86
                                      + +        AV V+  L     + +  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH-RHAMNEL 188

Query: 87  GALQPVIGLLSSCCSES-----------QREAALLLGQFAATDSDCKVHIVQR-GAVRPL 134
           G LQ +  LL   C              +R A + L      D   K  +    G +R L
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 135 IEMLQSPDVQLREMSAFALGRLA--QDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAA 191
           +  L+S    L+++ A  L  L+   D++++  +   G +  L++   + K  S   +  
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 192 FALYGLA-DNEDNVADFIRVGGVQK-----------------LQDGEFIVQATKDCVAKT 233
            AL+ L+    +N AD   V G                    ++ G  I++     +A  
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 234 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLG 292
               +       L  LL  ++     +       L +L + +   +    D G + +L  
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428

Query: 293 LLGSTNPKQQLDGAVALFKLA 313
           L+ S +    +  A AL  L 
Sbjct: 429 LIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  101 bits (254), Expect = 2e-23
 Identities = 55/366 (15%), Positives = 117/366 (31%), Gaps = 60/366 (16%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-- 58
           +   +  +  LL    T  +   +  L  ++  + ++   + +   LP LI +L   D  
Sbjct: 27  LGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKD 85

Query: 59  ----------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 108
                           A   + N++HS P+ K+       L  +  + + C         
Sbjct: 86  SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYC--------- 136

Query: 109 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 168
                    ++  +        +      + +P       +   L +L+ D  ++  +  
Sbjct: 137 ---------ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187

Query: 169 NGGLVPLLKLL-----------DSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG---- 212
            GGL  + +LL           D  + +L+  A  AL  L   +  N A    + G    
Sbjct: 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247

Query: 213 -VQKLQDGEFIVQ-----ATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEK-GVQRRV 264
            V +L+     +Q       ++   +     ++ +     +  L+      +K    + V
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 265 ALALAHLC--SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSV 322
             AL +L     +++  I    G L  L+G L   +    L     +         +SS+
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA---IIESGGGILRNVSSL 364

Query: 323 DAAPPS 328
            A    
Sbjct: 365 IATNED 370

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 81.2 bits (200), Expect = 1e-16
 Identities = 15/81 (18%), Positives = 36/81 (44%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
              +  L++ L+     +   A G L  L+ +N +++  + +  A+  L  ++ S+   I
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 62  HYEAVGVIGNLVHSSPNIKKE 82
              +   + NL+ + P   K+
Sbjct: 438 AMGSAAALRNLMANRPAKYKD 458

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  166 bits (423), Expect = 2e-46
 Identities = 59/331 (17%), Positives = 134/331 (40%), Gaps = 16/331 (4%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ--IVECNALPTLI-LMLRSEDS 59
                ++E++     + Q +A    R L  K         I     +   +  + R E+ 
Sbjct: 20  VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79

Query: 60  AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
            + +E+  V+ N+   +    + V+ AGA+   I LLSS   + Q +A   LG  A   +
Sbjct: 80  TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139

Query: 120 DCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-K 177
            C+ +++    + PL+++    + + +   + +AL  L +        A     + +L  
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199

Query: 178 LLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKL------QDGEFIVQATK--- 227
           LL   +  +  +A +AL  L+D   D +   I  G  ++L       D + +  A +   
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259

Query: 228 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGG 286
           + V     + +  ++   L  LL+L+   ++ +++     ++++ +    Q    ID   
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 287 LELLLGLLGSTNPKQQLDGAVALFKLANKAT 317
              L+ +L +   + + + A A+    +  +
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGS 350

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  163 bits (414), Expect = 4e-45
 Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +   +  L  LL  +DT V   A  AL  L+   ++    +++      L+ +L   D  
Sbjct: 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK 249

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +   A+  +GN+V       + +L   ALQ ++ LLSS     ++EA   +    A +  
Sbjct: 250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA 309

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQAGIAHNGGLVPLLKL 178
               ++       LI +LQ+ + + R+ +A+A+              +   G + PL  L
Sbjct: 310 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

Query: 179 LDSKNGSLQHNAAFALYGLADNEDNVAD------------FIRVGGVQKLQD 218
           L   +  +   A   L  +    +  A                  G+ K++ 
Sbjct: 370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  155 bits (394), Expect = 3e-42
 Identities = 61/343 (17%), Positives = 123/343 (35%), Gaps = 15/343 (4%)

Query: 2   EGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
            G +   VE L+  +   +Q  +A  L  +A  N      +++  A+P  I +L SE   
Sbjct: 63  PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDS 119
           +  +AV  +GN+   S   +  VL    L P++ L S     +  R A   L       S
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182

Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KL 178
                      +  L  +L   D  +   + +AL  L+   +++     + G+   L +L
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 179 LDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL------QDGEFIVQATKD--- 228
           L   +  +   A  A+  +   ++      +    +Q L             +A      
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302

Query: 229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDDQRTIFIDGGG 286
             A    +++  I   +   L+ +++ AE   ++  A A+ +  S    +Q    ++ G 
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362

Query: 287 LELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSP 329
           ++ L  LL   + K        L  +       +  +    +P
Sbjct: 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP 405

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  137 bits (347), Expect = 1e-35
 Identities = 64/304 (21%), Positives = 118/304 (38%), Gaps = 20/304 (6%)

Query: 29  TLAFKNDENKNQIVECNA--LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVL 84
            + F   +  N  +         +I M+ S+       A      L+   PN  I + + 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 85  AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 143
             G +   +  L        Q E+A +L   A+ +S     ++Q GAV   IE+L S   
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 144 QLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNE 201
            ++E + +ALG +A D       +     L PLL+L   +N  ++  NA +AL  L   +
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 202 DNVADFIRV-GGVQKL------QDGEFIVQATKDCVAKTLKRLEEKIH----GRVLNHLL 250
               +F +V   +  L       D + +  A    ++       +KI       V   L+
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW-ALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 251 YLMRVAEKGVQRRVALALAHLCSPDDQRT-IFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
            L+   +  V      A+ ++ + DD +T + ++   L+ LL LL S     + +    +
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 310 FKLA 313
             + 
Sbjct: 301 SNIT 304

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  137 bits (346), Expect = 1e-35
 Identities = 52/302 (17%), Positives = 109/302 (36%), Gaps = 25/302 (8%)

Query: 2   EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
              +PPL++L  +     + R A  AL  L                L  L  +L   D+ 
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +  +A   +  L     +  + V+ AG  + ++ LL     +    A   +G     D  
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLL 179
               I+   A++ L+ +L SP   +++ + + +  +      Q     +  + P L+ +L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327

Query: 180 DSKNGSLQHNAAFALYGLA--DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237
            +     +  AA+A+       + + +   + +G ++ L D               L  +
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD--------------LLTVM 373

Query: 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 297
           + KI    LN L  ++R+ E+  +R            +    +  +  GL+ +  L    
Sbjct: 374 DSKIVQVALNGLENILRLGEQEAKRNGT-------GINPYCALIEEAYGLDKIEFLQSHE 426

Query: 298 NP 299
           N 
Sbjct: 427 NQ 428

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  159 bits (404), Expect = 3e-43
 Identities = 61/331 (18%), Positives = 137/331 (41%), Gaps = 14/331 (4%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRSEDS 59
           ++  +P + + L   D + Q +A    R  L+ ++    + +++   +P L+  +R    
Sbjct: 85  LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP 144

Query: 60  A-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
             +  EA   + N+   +    K V+ A A+   I LL +   E + +A   LG  A   
Sbjct: 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 204

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLK 177
           +D + +++Q  A+ P++ +  S    L   + + L  L +    Q   +     +P L K
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 264

Query: 178 LLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKL------QDGEFIVQATK--- 227
           L+ S +     +A +A+  L+D  ++ +   I V   ++L      +       A +   
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324

Query: 228 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGG 286
           + V     + +  I+  VL  L  L+   ++ +++     ++++ +   +Q    ID   
Sbjct: 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 287 LELLLGLLGSTNPKQQLDGAVALFKLANKAT 317
           +  L+ LL     K + +   A+   ++   
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGL 415

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  152 bits (386), Expect = 1e-40
 Identities = 64/346 (18%), Positives = 129/346 (37%), Gaps = 16/346 (4%)

Query: 3   GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLD 180
               V   A+  L +++ S D +    + +A+  L+           +  +   L++LL 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV-----QKLQDGEFIVQ-----ATKDCV 230
            ++  +Q  A  A+  +    D     +   GV       L   +  ++        +  
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369

Query: 231 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS----PDDQRTIFIDGGG 286
           A   ++++  I   ++  L+ L+ VAE   ++    A+++  S      D     +  G 
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429

Query: 287 LELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQ 332
           ++ L  LL   + +       AL  +               +    
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENAD 475

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  151 bits (383), Expect = 3e-40
 Identities = 51/299 (17%), Positives = 105/299 (35%), Gaps = 18/299 (6%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
              + P++ L       + R A   L  L        +  V   ALPTL  ++ S D+  
Sbjct: 214 CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET 273

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             +A   I  L        + V+     + ++ LLS   +  Q  A   +G     +   
Sbjct: 274 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLLD 180
              ++  G +  L  +L SP   +++ + + +  + A +      +     + PL+KLL+
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240
                 +  A +A+   +       D IR            + Q     +   L+  + +
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIR----------YLVSQGCIKPLCDLLEIADNR 443

Query: 241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 299
           I    L+ L  ++++ E   + R         + ++        GG+E +     + N 
Sbjct: 444 IIEVTLDALENILKMGEADKEARGL-------NINENADFIEKAGGMEKIFNCQQNEND 495

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  147 bits (373), Expect = 7e-39
 Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 16/234 (6%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +   +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + 
Sbjct: 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 314

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +   A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG----IAHNGGLVPLL 176
               ++    + PL+++L+  + + ++ + +A+   +     +      +   G + PL 
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434

Query: 177 KLLDSKNGSLQHNAAFALYGLA-----------DNEDNVADFI-RVGGVQKLQD 218
            LL+  +  +      AL  +             N +  ADFI + GG++K+ +
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  142 bits (359), Expect = 5e-37
 Identities = 63/306 (20%), Positives = 111/306 (36%), Gaps = 14/306 (4%)

Query: 22  AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN-LVHSSPNIK 80
            A       +  + + +        LP +   L S+D      A       L        
Sbjct: 64  GADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPI 123

Query: 81  KEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
             V+ AG +  ++  +     E  Q EAA  L   A+  S     +V   AV   I++L 
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183

Query: 140 SPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198
           +  V+++E + +ALG +A D    +  +     + P+L L +S   SL   A + L  L 
Sbjct: 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243

Query: 199 DNEDNVADFIRV-GGVQKL------QDGEFIVQAT---KDCVAKTLKRLEEKIHGRVLNH 248
             +    D+  V   +  L       D E +V A            + ++  I  R+   
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 249 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 307
           L+ L+      VQ     A+ ++ +  D Q  + I+ G L  L  LL S     + +   
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 308 ALFKLA 313
            +  + 
Sbjct: 364 TISNIT 369

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  123 bits (309), Expect = 3e-30
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 15/219 (6%)

Query: 3   GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
                LVELL    T VQ  A  A+  +   ND     ++    LP L L+L S    I 
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK 358

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DS 119
            EA   I N+   +    + V+ A  + P++ LL     ++++EA   +   ++      
Sbjct: 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 418

Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG------------IA 167
           D   ++V +G ++PL ++L+  D ++ E++  AL  + +                   I 
Sbjct: 419 DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478

Query: 168 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 206
             GG+  +     ++N  +   A   +      E++  D
Sbjct: 479 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVD 517

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score =  133 bits (336), Expect = 1e-37
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 341 NNATLSDVTFLV----EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 396
           NN  ++DV F+V      R   AH+  L   S  F AMF G   E  +  I IP++    
Sbjct: 4   NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSE-IHIPDVEPAA 62

Query: 397 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           F ++++++Y+  +D+  D     L AA +Y++  L + C 
Sbjct: 63  FLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACV 102

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  137 bits (346), Expect = 1e-34
 Identities = 65/366 (17%), Positives = 122/366 (33%), Gaps = 55/366 (15%)

Query: 2   EGGIPPLVELL------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 55
           +G    L E           D  ++R AA  L  L    +  +  I +  ++  L+ + R
Sbjct: 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431

Query: 56  SEDSAIHYEAVGVIGNLVHSSPNIKKE--------------------------------V 83
             + +  Y  V    NL ++    +                                  +
Sbjct: 432 GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

Query: 84  LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 143
              G    +  L  +    SQ   A +L        + +  +VQ G V+ L+ M      
Sbjct: 492 ANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTE 550

Query: 144 QLREMSAFALGRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQ-HNAAFALYGLA- 198
           + +  +  AL R+   ++ +   +G      + PLL LL     +L+   +  AL  LA 
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610

Query: 199 DNEDNVADFIRVGGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIH----GRVLNHL 249
            NE      I+  GV K++        ++ +A   C+   +   +           +  L
Sbjct: 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL 670

Query: 250 LYLMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAV 307
             L    ++      A ALA + S   +    I      L++L  L+ + +P  Q  G V
Sbjct: 671 ALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730

Query: 308 ALFKLA 313
            +  + 
Sbjct: 731 IILNMI 736

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  131 bits (331), Expect = 9e-33
 Identities = 38/248 (15%), Positives = 94/248 (37%), Gaps = 10/248 (4%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLILMLRSEDS 59
           EGG+  L+ +      K +R A  AL  +    +   + +     + +  L+ +L+ + +
Sbjct: 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594

Query: 60  AI-HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
           A+ ++E++  + NL   + ++++ ++    +  +   L        R AA  L     ++
Sbjct: 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQAGIAHNGGLVPLL 176
              K+       V+ L  + +  D +     A AL  +        +  +A    L  L 
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714

Query: 177 KLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKL----QDGEFIVQATKDCVA 231
            L+ + + ++QH     +  + +  + +A        ++ L    Q  +      ++   
Sbjct: 715 TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774

Query: 232 KTLKRLEE 239
           + L   E 
Sbjct: 775 QCLAAAER 782

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  124 bits (311), Expect = 4e-30
 Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 37/318 (11%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           EG    L  L +      Q   A  L  +     E + ++V+   +  L+ M        
Sbjct: 494 EGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 62  HYEAVGVIGNLVHSSPN--IKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATD 118
              A   +  +  +           +   ++P++ LL   C+  +  E+ + L   A+ +
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-K 177
              +  I++   V  +   L    + L   +A  L  L            N   V  L  
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672

Query: 178 LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237
           L + ++       A AL  +        + I                             
Sbjct: 673 LCEDEDEETATACAGALAIITSVSVKCCEKILA--------------------------- 705

Query: 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIFIDGGGLELLLGLLGS 296
                   L+ L  L+      VQ R  + + ++  + ++      +   +ELL GL   
Sbjct: 706 ----IASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL 761

Query: 297 TNPKQQLDGAVALFKLAN 314
            +  +     VA   LA 
Sbjct: 762 PDDTRAKAREVATQCLAA 779

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  106 bits (266), Expect = 1e-24
 Identities = 51/317 (16%), Positives = 99/317 (31%), Gaps = 11/317 (3%)

Query: 6   PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYE 64
             + + L   D + +     A+  L     +  NQ+V     L  ++ M  ++D      
Sbjct: 250 EYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRV 309

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKV 123
           A   +            + L    +  +  L  S     +  A + L +  +    D  +
Sbjct: 310 ACECLIAASSKKDK--AKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367

Query: 124 HIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LL 176
                GA   L E  +        D  +R  +A  L  L  D   +  +  +   +  L+
Sbjct: 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALM 427

Query: 177 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 236
            L    N S  +        L +  +       +  + K        +   D V    KR
Sbjct: 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487

Query: 237 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS 296
           +    +  +   L  L +      Q  +A  L  +C   + R   +  GG++ LL +   
Sbjct: 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE 547

Query: 297 TNPKQQLDGAVALFKLA 313
              K +     AL ++ 
Sbjct: 548 GTEKGKRHATQALARIG 564

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  101 bits (253), Expect = 6e-23
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 1   MEGGIPPLVELLEFTDTKVQR-AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 59
               I PL+ LL+   T ++   +  AL  LA  N+  + +I++   +  +   L  +  
Sbjct: 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637

Query: 60  AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
            +   A   + NLV S   IK        ++ +  L      E+    A  L    +   
Sbjct: 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697

Query: 120 DCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG----LVP 174
            C   I+     +  L  ++ +P   ++      +  +       A           L  
Sbjct: 698 KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSG 757

Query: 175 LLKLLDSKNGSLQHNAAFAL-----YGLADNEDN 203
           L +L D      +  A   L     Y + +  DN
Sbjct: 758 LGQLPDDTRAKAREVATQCLAAAERYRIIERSDN 791

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 60.2 bits (145), Expect = 9e-10
 Identities = 46/334 (13%), Positives = 99/334 (29%), Gaps = 27/334 (8%)

Query: 2   EGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +  I  +  L +   D  +       +  L   + E    ++    +P  + +L  +   
Sbjct: 48  DHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHEN 107

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
               A   +  ++++        L+    +P        C+ + RE   LL     + +D
Sbjct: 108 CVSTAQFCLQTILNA--------LSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
             +    R  V  LI                 +  L + +   + +        +     
Sbjct: 160 RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGS 219

Query: 181 SKNGSLQHNAAFALYGLADN------EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 234
           S        A+  L  + +N      +    D I      KL   +   +         L
Sbjct: 220 SST-----IASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITAL 274

Query: 235 ------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 288
                    +      +L  +L +    ++  QR     L    S  D+    +   G++
Sbjct: 275 LNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK-ALCEQGVD 333

Query: 289 LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSV 322
           +L  L  S N   ++   V L KL +     +++
Sbjct: 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  130 bits (328), Expect = 2e-34
 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 3/192 (1%)

Query: 3   GGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSA 60
            G+  LV   LE     ++  AA  + T +      + Q++   AL  L+ +L  +    
Sbjct: 81  SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT 140

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +  +A+  I  LV        + L       ++  +     + + ++A LL        +
Sbjct: 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 200

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
            K  +   G V+ L+ ++++      E    AL  L  D            L  L +LL 
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL-GLEELLR 259

Query: 181 SKNGSLQHNAAF 192
            +   LQ +  +
Sbjct: 260 HRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  107 bits (268), Expect = 3e-26
 Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLI-LMLRSE 57
           +   +PP     E    + +R  A  L  LA   +N +N     + + +  L+   L + 
Sbjct: 37  LSQPMPPTAGEAEQAADQQEREGA--LELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94

Query: 58  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAA 116
            + + + A  +IG    +   I+++VL  GAL+ ++ LL     ++ + +A   +     
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 117 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPL 175
                 +  ++      L+  +Q    +L+  SAF L  L      ++  +   G +  L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214

Query: 176 LKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ 217
           + L+ +++     +   AL  L  +        R   +   +
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 84.7 bits (209), Expect = 2e-18
 Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 38/257 (14%)

Query: 40  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSS 98
           +++     PT     ++ D      A+ ++ +L  +  N   +      +  ++G  L +
Sbjct: 35  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEA 93

Query: 99  CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 157
             +  +  AA L+G  +   +  +  ++  GA+R L+ +L       +R  + FA+  L 
Sbjct: 94  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153

Query: 158 QD-MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 216
           ++            G   L++ +  +   L+  +AF L  L          +   G    
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---- 209

Query: 217 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC--SP 274
                                       ++  L+ L+R         V  AL  L    P
Sbjct: 210 ----------------------------MVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241

Query: 275 DDQRTIFIDGGGLELLL 291
              R       GLE LL
Sbjct: 242 QGVRECREPELGLEELL 258

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.5 bits (206), Expect = 5e-18
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 38/231 (16%)

Query: 89  LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-EMLQSPDVQLRE 147
           + P  G       + +RE AL L      + D      Q   +  L+   L++    LR 
Sbjct: 41  MPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 100

Query: 148 MSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA-DNEDNV 204
            +A  +G  +Q++   Q  +   G L  LL+LLD     +++  A FA+  L  + E  +
Sbjct: 101 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160

Query: 205 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 264
             F+R+ G   L                                    M+   + ++ + 
Sbjct: 161 LQFLRLDGFSVLMR---------------------------------AMQQQVQKLKVKS 187

Query: 265 ALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314
           A  L +L     + +      G ++ L+ L+ + +         AL  L  
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 72.4 bits (177), Expect = 3e-14
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
             G   L+  ++    K++  +A  L+ L   + E+K  +     +  L+ ++R+E S  
Sbjct: 166 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF 225

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 108
           H   +G + +LV   P   +E         +  LL   C   Q+   
Sbjct: 226 HEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHEE 270

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 35/192 (18%)

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KLLDSKN 183
           ++ +       E  Q+ D Q RE +   L  L ++M N A      G+  L+ + L++  
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 184 GSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 242
             L+  AA  +   + +        + +G ++KL                          
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL-------------------------- 129

Query: 243 GRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIFIDGGGLELLLGLLGSTNPKQ 301
                 L  L R A   V+ +   A++ L    +     F+   G  +L+  +     K 
Sbjct: 130 ------LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183

Query: 302 QLDGAVALFKLA 313
           ++  A  L  L 
Sbjct: 184 KVKSAFLLQNLL 195

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  134 bits (337), Expect = 7e-34
 Identities = 51/339 (15%), Positives = 118/339 (34%), Gaps = 29/339 (8%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           +  +P ++ +L F    V+  AA  L+ L ++ND+ K  + +   +P L+ +L      +
Sbjct: 47  QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106

Query: 62  HYEAVGVIGNL-VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           H  A G + N+      + K  +     +  ++ LL         E         ++   
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166

Query: 121 CKVHIVQRGAVRPLIEMLQSP------------------DVQLREMSAFALGRLAQDMHN 162
            K+ IV   A+  L + +  P                     +   +A  L  ++ +   
Sbjct: 167 IKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225

Query: 163 --QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 220
             +     +G +  L+ ++ ++ G    ++      +     N++  +     Q  +  E
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR-NLSYQVHREIPQAERYQE 284

Query: 221 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCS-----P 274
                  +      +  E      V+   + L++ ++   +    A A+ +LC+      
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344

Query: 275 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
              R+       L  +  LL + + +     + AL  LA
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  109 bits (273), Expect = 1e-25
 Identities = 65/380 (17%), Positives = 119/380 (31%), Gaps = 87/380 (22%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR-SEDS 59
             GIP LV LL+    +V   A GAL+ ++F ++ +NK  I  C+ +P L+ +LR + D 
Sbjct: 89  LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148

Query: 60  AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
            +     G + NL  SS +  K  +   AL  +   +    S  +RE             
Sbjct: 149 DLTEVITGTLWNL--SSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206

Query: 120 D-------------------CKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALG 154
                                +      G V  LI ++Q+       D +L E     L 
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266

Query: 155 RLAQ--------------------------DMHNQAGIAHNGGLVPLLKLL-DSKNGSLQ 187
            L+                                  +     +   + LL +SK  ++ 
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326

Query: 188 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 247
             +A A+  L         +IR    Q+                            + L+
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQE----------------------------KALS 358

Query: 248 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 307
            +  L+    + V +  + AL +L      + + I    +  L+  L         + + 
Sbjct: 359 AIADLLTNEHERVVKAASGALRNLAVDARNKEL-IGKHAIPNLVKNLPGGQQNSSWNFSE 417

Query: 308 ALFKLANKATTLSSVDAAPP 327
               + +   T++ V A   
Sbjct: 418 DT--VISILNTINEVIAENL 435

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 88.5 bits (218), Expect = 9e-19
 Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 21/232 (9%)

Query: 81  KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 140
                   L  VI +L       +  AA  L      +   K  + +   +  L+ +L  
Sbjct: 42  PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH 101

Query: 141 PDVQLREMSAFALGRLA--QDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGL 197
           P  ++   +  AL  ++  +D  N+  I +  G+  L++LL  +++  L       L+ L
Sbjct: 102 PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL 161

Query: 198 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 257
           + ++    + +                            +      R  N       +  
Sbjct: 162 SSHDSIKMEIVDHALHALTD----------------EVIIPHSGWEREPNEDCKPRHIEW 205

Query: 258 KGVQRRVALALAHLCS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAV 307
           + V    A  L ++ S   + R    +  G ++ L+ ++ +   ++  D  +
Sbjct: 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 84.2 bits (207), Expect = 2e-17
 Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 65/279 (23%)

Query: 2   EGGIPPLVELL------------------EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 43
           +  +  L + +                        V    AG LR ++ +  E + ++ E
Sbjct: 173 DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE 232

Query: 44  CNAL-PTLILMLRSE------DSAIHYEAVGVIGNL------------------------ 72
           C+ L   LI ++++E      DS +    V ++ NL                        
Sbjct: 233 CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292

Query: 73  -VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-----DCKVHIV 126
              S     + +     ++  I LL    + +  EA+    Q             +  + 
Sbjct: 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352

Query: 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 186
           Q  A+  + ++L +   ++ + ++ AL  LA D  N+  I     +  L+K L     + 
Sbjct: 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNS 411

Query: 187 QHN-----AAFALYGL----ADNEDNVADFIRVGGVQKL 216
             N         L  +    A+N +         G++KL
Sbjct: 412 SWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL 450

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 81.5 bits (200), Expect = 2e-16
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 13/198 (6%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           E  +  + +LL     +V +AA+GALR LA  +  NK  I   +A+P L+  L       
Sbjct: 354 EKALSAIADLLTNEHERVVKAASGALRNLA-VDARNKELIG-KHAIPNLVKNLPGGQQNS 411

Query: 62  HYE--------AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES--QREAALLL 111
            +          +  I  ++  +    K++     ++ ++ +  S        R AAL+L
Sbjct: 412 SWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471

Query: 112 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 171
                   + +  + + G  +   ++  +   + +   ++    L     NQ        
Sbjct: 472 QTIWG-YKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDR 530

Query: 172 LVPLLKLLDSKNGSLQHN 189
               +  + S   SL +N
Sbjct: 531 EEIQMSNMGSNTKSLDNN 548

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  131 bits (331), Expect = 1e-33
 Identities = 62/357 (17%), Positives = 115/357 (32%), Gaps = 49/357 (13%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           IP  V+ L   D K Q   A  ++   F+++  K Q+ +   +  L+ +LRS +  +   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A G + NLV  S   K E      ++  + LL    +   ++    L    ++  + K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 125 IVQRGAVRPLIEMLQSP----------------DVQLREMSAFALGRLAQDMHNQAGIAH 168
           ++   A+  L + +  P                D ++   +   L  L+     +  + +
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 169 NGGLVPLLKLL-------DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 221
             GL+  L             +     N    L+ L+   D              ++   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 222 IVQATKDCVAKTLKRLEEK------------------IHGRVLNHLLYLMRVAE-KGVQR 262
              +T     K+ K +                      H   +   L LM  ++      
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 263 RVALALAHLC------SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313
             A AL +L       S    + I +   GL  +  LL S N      GA  L  ++
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 95.3 bits (236), Expect = 3e-21
 Identities = 51/367 (13%), Positives = 112/367 (30%), Gaps = 56/367 (15%)

Query: 2   EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------ 54
           + GI   V LL    + ++Q+   G L  L+   DE K +++  +ALP L   +      
Sbjct: 85  QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEELIA-DALPVLADRVIIPFSG 142

Query: 55  ----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 104
                        D  + + A G + NL  +    +     +G +  ++  + +C + S+
Sbjct: 143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR 202

Query: 105 REAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAF------------ 151
            +   +        +   ++        R L    ++   +      F            
Sbjct: 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY 262

Query: 152 --ALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFI 208
              L     +      + H+  +   L L+  SK  +     A AL  L  ++  ++  +
Sbjct: 263 DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322

Query: 209 RVGGVQKLQDGEFIVQ-------ATKDCVAKTLKRL------EEKIHGRVLNHLLYLMRV 255
                 K +    I +             A  L  +         +  +V   +  L+  
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS 382

Query: 256 AEKG------VQRRVALALAHLC-SPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAV 307
                     +       + +L  S       +     L  ++ L  S+ +PK      +
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 308 ALFKLAN 314
            L  + +
Sbjct: 443 LLSDMWS 449

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 15/168 (8%)

Query: 5   IPPLVELLEFTDTKVQR-AAAGALRTLAFKNDENKNQ-----IVECNALPTLILMLRSED 58
           I   + L+  +       A AGAL+ L        +       ++   LP +  +L+S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 59  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS------ESQREAALLLG 112
           S +      ++ N+          V+       V  LL+S         +    A   + 
Sbjct: 345 SDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 113 QFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQD 159
              A+             +  +I + +S    +  E +   L  +   
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 17/201 (8%)

Query: 16  DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI------ 69
           D  +       L      N +    +   +A+ T + ++         EA          
Sbjct: 255 DKMMNNNYDCPLPEEE-TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313

Query: 70  GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 129
              + SS   +   L    L  +  LL S  S+  R  A LL   +         +    
Sbjct: 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMG-NQ 371

Query: 130 AVRPLIEMLQS------PDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSK 182
               +  +L S          +   + + +  L             +  L  ++ L  S 
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431

Query: 183 NGSLQHNAAF-ALYGLADNED 202
                  AA   L  +  +++
Sbjct: 432 ASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 243 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQ 301
           G  +   +  +   ++  Q   A  + H C  D+  +      GG+  L+ LL S N   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 302 QLDGAVALFKLA 313
           Q   A AL  L 
Sbjct: 61  QQAAAGALRNLV 72

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score =  122 bits (308), Expect = 7e-32
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 342 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMF--DGGYREKDARDIEIPNIRWEVFEL 399
            +   D   +++G      +  L A+S   R     +    +     IE+  I   V   
Sbjct: 28  ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMRE 87

Query: 400 MMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFH 459
           ++ +I++G + +  D  QD+++AAD  LL  LK LC   +   I+ EN   + + +  + 
Sbjct: 88  ILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147

Query: 460 AISLRHTCILYIMEHFDKLS 479
              + +    Y+  HF  +S
Sbjct: 148 LHHVHYLATEYLETHFRDVS 167

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score =  115 bits (289), Expect = 4e-29
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 341 NNATLSDVTFL---VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PN 391
                 D+T       GR F AHR  L A+++ F  +  G + E  +  +E+      P 
Sbjct: 28  RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPG 87

Query: 392 IRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 451
              +  E ++ ++YTG + V+     ++L  AD++LL  LK  C   + + + L N  ++
Sbjct: 88  PEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147

Query: 452 YELSEAFHAISLRHTCILYIMEHFDKLS 479
           + L+  +    L       I  +F K+ 
Sbjct: 148 HSLAHMYTLSQLALKAADMIRRNFHKVI 175

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score =  100 bits (252), Expect = 1e-25
 Identities = 30/91 (32%), Positives = 41/91 (45%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  101 bits (253), Expect = 1e-24
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 1   MEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 58
           ME  +   V +LE          AAA  ++   F+  E + ++ +   +  L+ +L+ ++
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 59  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
             +     G + NLV    + K EV     +  ++ +L        ++    L    +++
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHN------- 169
              K  ++   A+  L E +  P     E        L      +N  G   N       
Sbjct: 126 DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 170 --------GGLVP-LLKLLDSKNGSLQHNAA 191
                    GL+  L+  +       Q +  
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDK 215

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 66.9 bits (163), Expect = 8e-13
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 131 VRPLIEMLQSPD--VQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 187
           +   + ML++          +A  +     Q    +  +    G++ LL+LL  +N  +Q
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 188 HNAAFALYGLA-DNEDNVADFIRVGGVQKL-------QDGEFIVQAT------------- 226
                AL  L  ++ DN  +   + GV +L       +D E   Q T             
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 227 ----KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ-RTIF 281
                + +    + +     G           + +  +   V   L ++ S     R   
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189

Query: 282 IDGGGL-ELLLGLLGSTNPKQQLDGAV 307
               GL + L+  +  T    Q D   
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKA 216

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 341 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMF--DGGYREKDARDIEIPNIRWEVFE 398
             +   D   +++G      +  L A+S   R     +    +     IE+  I   V  
Sbjct: 43  EESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 102

Query: 399 LMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
            ++ +I++G + +  D  QD+++AAD  LL  LK LC
Sbjct: 103 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLC 139

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L+DV  +V   +F AH+  L+A S  F ++F    +   +     P I  E F +++ F+
Sbjct: 29  LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFM 88

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT  +++       ++  A    +E +   C
Sbjct: 89  YTSRLNLREGNIMAVMATAMYLQMEHVVDTC 119

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DVT  VEG+RF AHR  L A S  F +    G  + +        +  + FE +++F 
Sbjct: 29  LCDVTIFVEGQRFRAHRSVLAACSSYFHSRI-VGQADGELNITLPEEVTVKGFEPLIQFA 87

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT  + ++ +   ++ +  +   +  ++  C
Sbjct: 88  YTAKLILSKENVDEVCKCVEFLSVHNIEESC 118

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DVT +VE + F AHR  L A S+ F     G  +  D        +    F  +++F 
Sbjct: 32  LCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVTARGFGPLLQFA 90

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT  + ++ +  ++++R A+   +  L+  C
Sbjct: 91  YTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 91.5 bits (228), Expect = 3e-22
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
             D T  V G  F AH   L   S  F+ ++  G        + +P    E+F L++ F 
Sbjct: 25  YCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS----VVLPAGFAEIFGLLLDFF 80

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEA 457
           YTG + +T      +L AA +  +     LC+    Q    +  S + +   +
Sbjct: 81  YTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQSGPS 133

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
             D T  V G  F AH   L   S  F++++  G        + +P    E+F L++ F 
Sbjct: 24  YCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS----VVLPAGFAEIFGLLLDFF 79

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           YTG + +T      +L AA +  +     LC+
Sbjct: 80  YTGHLALTSGNRDQVLLAARELRVPEAVELCQ 111

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DVT LVEG+RF AHR  L A S  F +    G  + +        +  + FE +++F 
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRI-VGQTDAELTVTLPEEVTVKGFEPLIQFA 94

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT  + ++ D   ++ R  +   +  ++  C
Sbjct: 95  YTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 89.6 bits (223), Expect = 8e-22
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L D T ++   +F AHR  L + S+ F A++      ++   ++   ++ + F+ ++ FI
Sbjct: 22  LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFI 79

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           YTG++++     +++ +AAD   +E +   C+
Sbjct: 80  YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 89.6 bits (223), Expect = 9e-22
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L DV  +V+ + F+AHR  L  +S  F  +F    +        +  +  + F+ ++ + 
Sbjct: 28  LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH-----YTLDFLSPKTFQQILEYA 82

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
           YT ++    +   DLL AA+   +E L+  C
Sbjct: 83  YTATLQAKAEDLDDLLYAAEILEIEYLEEQC 113

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRF 403
             DV+ +V+G  F AHR  L ASS  FR +F+          +E+P  ++ + F+ ++ F
Sbjct: 33  YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAV----VELPAAVQPQSFQQILSF 88

Query: 404 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
            YTG + + +     L+  A    ++ +    
Sbjct: 89  CYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 83.4 bits (207), Expect = 1e-19
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L D TF+V+G  F AH+  L A S+ F+ +F           + +          ++ F+
Sbjct: 27  LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF-----VDQKDVVHLDISNAAGLGQVLEFM 81

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           YT  + ++ +   D+L  A    ++ +   C 
Sbjct: 82  YTAKLSLSPENVDDVLAVATFLQMQDIITACH 113

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
           L D    V  + F AH + L   S                       I    F  ++ F+
Sbjct: 30  LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW---------ALGEGISPSTFAQLLNFV 80

Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           Y  SV++     + L  AA    ++ L+  C 
Sbjct: 81  YGESVELQPGELRPLQEAARALGVQSLEEACW 112

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
             DVT +VE R+F AH+  L ASS  F  +F    +      +E+  IR E+F  ++ +I
Sbjct: 31  FCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQV-----VELSFIRAEIFAEILNYI 85

Query: 405 YTGS-VDVTLDIAQDLLRAAD 424
           Y+   V V  D+  +L+++  
Sbjct: 86  YSSKIVRVRSDLLDELIKSGQ 106

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 74.5 bits (183), Expect = 5e-15
 Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 43/271 (15%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
              L  LL+  ++  + ++A  L+       +         A+   I     ++      
Sbjct: 25  DDELFRLLDDHNSLKRISSARVLQ--LRGGQD---------AVRLAIEFCSDKNYIRRDI 73

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
              ++G +       K E      L      L+   +  +  A     Q    +      
Sbjct: 74  GAFILGQIKICK---KCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKKNP----- 123

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184
           I     V             +R  +AFA+            I     +  L+ LL   NG
Sbjct: 124 IYSPKIVEQSQITAFDKSTNVRRATAFAISV----------INDKATIPLLINLLKDPNG 173

Query: 185 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 244
            +++ AAFA+     +  ++ D      V+ LQD    V+         L   ++K   R
Sbjct: 174 DVRNWAAFAININKYDNSDIRDCF----VEMLQDKNEEVRIE---AIIGLSYRKDK---R 223

Query: 245 VLNHLLYLMRVAEKGVQRRVALALAHLCSPD 275
           VL+ L   ++  +  V   +  A   L    
Sbjct: 224 VLSVLCDELK--KNTVYDDIIEAAGELGDKT 252

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 28/262 (10%), Positives = 76/262 (29%), Gaps = 41/262 (15%)

Query: 15  TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74
           ++T  +R A+                         L  +L   +S     +  V+     
Sbjct: 2   SNTYQKRKASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLRGG 52

Query: 75  SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 134
                        A++  I   S      +   A +LGQ             +      L
Sbjct: 53  -----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNIL 95

Query: 135 IE-MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 193
               L      +R  +  +  +  +     +       +         K+ +++   AFA
Sbjct: 96  NNMALNDKSACVRATAIESTAQRCKKNPIYSPKI----VEQSQITAFDKSTNVRRATAFA 151

Query: 194 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM 253
           +  + +++  +   I +     L+D    V+      A  +  + +  +  + +  + ++
Sbjct: 152 I-SVINDKATIPLLINL-----LKDPNGDVRNW---AAFAI-NINKYDNSDIRDCFVEML 201

Query: 254 RVAEKGVQRRVALALAHLCSPD 275
           +   + V+    + L++     
Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKR 223

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 80  KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
                       +  LL    S  +  +A +L      D           AVR  IE   
Sbjct: 16  LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLAIEFCS 64

Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199
             +   R++ AF LG++      +  + +    +     L+ K+  ++  A  +      
Sbjct: 65  DKNYIRRDIGAFILGQIKICKKCEDNVFN----ILNNMALNDKSACVRATAIESTAQRCK 120

Query: 200 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 259
                +  I         D    V+      A  +  + +K     +  L+ L++     
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRA---TAFAISVINDK---ATIPLLINLLKDPNGD 174

Query: 260 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316
           V+   A A+      +            +  + +L   N + +++  + L    +K 
Sbjct: 175 VRNWAAFAININKYDNSD--------IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 34/155 (21%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           +  IP L+ LL+  +  V+  AA A+    + N +              + ML+ ++  +
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEV 208

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
             EA+  +                   L  +   L    +    +     G+        
Sbjct: 209 RIEAIIGLSYRKDKR-----------VLSVLCDELKK--NTVYDDIIEAAGELGDKT--- 252

Query: 122 KVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR 155
                    +  L  ML    D ++   +   L R
Sbjct: 253 --------LLPVLDTMLYKFDDNEIITSAIDKLKR 279

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 52/235 (22%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +   ++ L+     V+RAAA AL  +  +            A+  LI  L+ ED+ +   
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRA 64

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A   +G +               A++P+I  L       ++ AA+ LGQ           
Sbjct: 65  AADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIGDER------ 107

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184
                AV PLI+ L+  D  +R  +AFALG +     ++  +       PL+K L  ++G
Sbjct: 108 -----AVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVE------PLIKALKDEDG 152

Query: 185 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 239
            ++ +AA AL  +      V   +     +  + G    +         L+  + 
Sbjct: 153 WVRQSAADALGEIGGER--VRAAME----KLAETGTGFARKV---AVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 46  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105
            +   I  L+ +   +   A   +G +               A++P+I  L    +  +R
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63

Query: 106 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165
            AA  LGQ                AV PLI+ L+  D  +R+ +A ALG++     ++  
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIG----DERA 108

Query: 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 225
           +       PL+K L  ++  ++  AAFAL  + D E  V   I+      L+D +  V+ 
Sbjct: 109 VE------PLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKA-----LKDEDGWVRQ 156

Query: 226 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 271
           +    A  L  +      RV   +  L        ++     L   
Sbjct: 157 S---AADALGEIG---GERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 43/193 (22%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           E  + PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ ED  +
Sbjct: 44  ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDEDGWV 92

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
              A   +G +               A++P+I  L       +  AA  LG+        
Sbjct: 93  RQSAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER--- 138

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
                   AV PLI+ L+  D  +R+ +A ALG           I        + KL ++
Sbjct: 139 --------AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEKLAET 180

Query: 182 KNGSLQHNAAFAL 194
             G  +  A   L
Sbjct: 181 GTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 63/187 (33%)

Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 189
            V   I+ LQ     +R  +A+ALG+          I     + PL+K L  ++  ++  
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKALKDEDAWVRRA 64

Query: 190 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 249
           AA AL  + D                                            R +  L
Sbjct: 65  AADALGQIGD-------------------------------------------ERAVEPL 81

Query: 250 LYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
           +  ++  +  V++  A+AL  +               +E L+  L   +   ++  A AL
Sbjct: 82  IKALKDEDGWVRQSAAVALGQIGDER----------AVEPLIKALKDEDWFVRIAAAFAL 131

Query: 310 FKLANKA 316
            ++ ++ 
Sbjct: 132 GEIGDER 138

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 52/234 (22%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +   ++ L+     V+RAAA AL  +  +            A+  LI  L+ ED+ +   
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRA 69

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A   +G +               A++P+I  L       ++ AA+ LGQ           
Sbjct: 70  AADALGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER------ 112

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184
                AV PLI+ L+  D  +R  +AFALG +     ++  +       PL+K L  ++G
Sbjct: 113 -----AVEPLIKALKDEDWFVRIAAAFALGEIG----DERAVE------PLIKALKDEDG 157

Query: 185 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 238
            ++ +AA AL  +      V   +     +  + G    +         L+  +
Sbjct: 158 WVRQSAADALGEIGGER--VRAAME----KLAETGTGFARKV---AVNYLETHK 202

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 43/193 (22%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           E  + PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ ED  +
Sbjct: 49  ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDEDGWV 97

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
              A   +G +               A++P+I  L       +  AA  LG+        
Sbjct: 98  RQSAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER--- 143

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
                   AV PLI+ L+  D  +R+ +A ALG           I        + KL ++
Sbjct: 144 --------AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEKLAET 185

Query: 182 KNGSLQHNAAFAL 194
             G  +  A   L
Sbjct: 186 GTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 44/230 (19%)

Query: 46  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105
            +   I  L+ +   +   A   +G +               A++P+I  L    +  +R
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68

Query: 106 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165
            AA  LGQ                AV PLI+ L+  D  +R+ +A ALG++  +      
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113

Query: 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 225
                 + PL+K L  ++  ++  AAFAL  + D E  V   I+      L+D +  V+ 
Sbjct: 114 ------VEPLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKA-----LKDEDGWVRQ 161

Query: 226 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 275
           +    A  L  +      RV   +  L        ++     L    S +
Sbjct: 162 S---AADALGEIG---GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 43/222 (19%)

Query: 88  ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 147
            ++  I  L       +R AA  LG+                AV PLI+ L+  D  +R 
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68

Query: 148 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
            +A ALG+          I     + PL+K L  ++G ++ +AA AL  + D      + 
Sbjct: 69  AAADALGQ----------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER--AVEP 116

Query: 208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 267
           +    ++ L+D ++ V+      A  L  + ++   R +  L+  ++  +  V++  A A
Sbjct: 117 L----IKALKDEDWFVRIA---AAFALGEIGDE---RAVEPLIKALKDEDGWVRQSAADA 166

Query: 268 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
           L  +                  +  L  +     +      L
Sbjct: 167 LGEIGGER----------VRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 32/187 (17%)

Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 189
            V   I+ LQ     +R  +A+ALG+    + ++  +       PL+K L  ++  ++  
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVE------PLIKALKDEDAWVRRA 69

Query: 190 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 249
           AA AL G   +E  V   I+      L+D +  V+ +    A  L ++ ++   R +  L
Sbjct: 70  AADAL-GQIGDERAVEPLIKA-----LKDEDGWVRQS---AAVALGQIGDE---RAVEPL 117

Query: 250 LYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
           +  ++  +  V+   A AL  +               +E L+  L   +   +   A AL
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167

Query: 310 FKLANKA 316
            ++  + 
Sbjct: 168 GEIGGER 174

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 71.3 bits (174), Expect = 4e-14
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHY 63
           +  L+ELL+     V + A   +  +A   ++          L  L  +L+ SE   +  
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQ 88

Query: 64  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
           E     G +    P      L    +  +         +++   +  L + A  +     
Sbjct: 89  EIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 183
            I     VR  + ML S + + +  +   +  + ++            L  ++ LL   +
Sbjct: 144 SI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDGD 194

Query: 184 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237
             ++ +A  AL  LA   D +   + +  +++L D   +V  T   V + + RL
Sbjct: 195 EIVRASAVEALVHLATLNDKLRKVV-IKRLEELNDTSSLVNKT---VKEGISRL 244

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 10/136 (7%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE------NKNQIVECNALPTLILMLR 55
           +     +  L+   +  +QR+    +  +            N            L+ +L+
Sbjct: 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ 664

Query: 56  SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQ---REAALLL 111
             D         +  N+  + P I KE+L     ++  I + +    + +   R   L  
Sbjct: 665 LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724

Query: 112 GQFAATDSDCKVHIVQ 127
           G F     +    +  
Sbjct: 725 GLFEVIPDNGTNEVYP 740

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 38/267 (14%), Positives = 88/267 (32%), Gaps = 44/267 (16%)

Query: 80  KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
           +K +L    +  +   + +     +++   ++        +    + Q+GAV+ ++E L 
Sbjct: 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLA 508

Query: 140 SP---DVQLREMSAFALGRLA---QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN---- 189
           +       +R +   AL R+             +    +  L +LL        +     
Sbjct: 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568

Query: 190 ----------AAFALYGLADNEDNVADFIRVGGVQK-----------LQDGEFIVQATKD 228
                     A  AL  LA +E +  + +    V             L +   + ++T +
Sbjct: 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628

Query: 229 C----------VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ- 277
                      +A     LE     R  N L+ L+++++   QR VA   A++ +     
Sbjct: 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688

Query: 278 -RTIFIDGGGLELLLGLLGSTNPKQQL 303
            + +      +E  + +        +L
Sbjct: 689 AKELLTKKELIENAIQVFADQIDDIEL 715

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 7/193 (3%)

Query: 8   LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSED-SAIHYEA 65
            +  +          +  AL  L+ K    K  I    +    L+ M++S+  +   Y  
Sbjct: 339 FINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGL 397

Query: 66  VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 125
           + ++ NL        +                     + +  A    +      + K  I
Sbjct: 398 LVIMANLSTLPE---EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY-I 453

Query: 126 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 185
           ++   +  L   + +     ++     +  + +  +    +A  G +  +L+ L +K   
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI 513

Query: 186 LQHNAAFALYGLA 198
            +         L 
Sbjct: 514 GEPIRILGCRALT 526

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 33/149 (22%)

Query: 46  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105
            L      +  E+  +  +    +              +   A +P++  LS+     + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWRIRG 60

Query: 106 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165
            AA ++G F               AV PLI++L+     +R  +A +L +          
Sbjct: 61  AAAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQ---------- 99

Query: 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
           I        + KL ++  G  +  A   L
Sbjct: 100 IGGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 34/150 (22%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           + P    +   +  V+R  + AL  +    DE         A   L+  L +ED  I   
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRM---GDE---------AFEPLLESLSNEDWRIRGA 61

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A  +IGN                A++P+I LL       +  AA  L Q           
Sbjct: 62  AAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGER------ 104

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALG 154
                    + ++ ++     R+++   L 
Sbjct: 105 -----VRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 189
            + P    +   +  +R   + AL R+  +              PLL+ L +++  ++  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGA 61

Query: 190 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 249
           AA+ + G   +E  V   I++     L+D    V++     A++L+++  +   RV   +
Sbjct: 62  AAWII-GNFQDERAVEPLIKL-----LEDDSGFVRSG---AARSLEQIGGE---RVRAAM 109

Query: 250 LYLMRVAEKGVQRRVALAL 268
             L        ++     L
Sbjct: 110 EKLAETGTGFARKVAVNYL 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 77/503 (15%), Positives = 129/503 (25%), Gaps = 146/503 (29%)

Query: 45  NALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 103
             L   +L LR   +  I     GV+G          K  +A                  
Sbjct: 138 LKLRQALLELRPAKNVLID----GVLG--------SGKTWVALDVCL------------- 172

Query: 104 QREAALLLGQFAATDSDCKVH---IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160
              +  +  +      D K+    +    +   ++EMLQ    Q+           +   
Sbjct: 173 ---SYKVQCKM-----DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 161 HNQAGIAHNGGLVPLLKLLDSKNGSL---------QHNAAFALYG---LADNED-NVADF 207
                I     L  LLK    +N  L         +   AF L     L       V DF
Sbjct: 225 LRIHSIQAE--LRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDF 280

Query: 208 IRVGGVQKLQDGEFIVQATKD-----------CVAKTLKRLEEKIHGRVL---------- 246
           +       +      +  T D           C  + L R     + R L          
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 247 -NHLLYLMRVAEKGVQRRVALALAHLCSPDDQR------TIF-----IDGGGLELLLGLL 294
                    V    +   +  +L  L  P + R      ++F     I    L L+   +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 295 GSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGD-QFVNNATLSDVTFLVE 353
             ++    ++      KL       S V+  P   T  + +          L +   L  
Sbjct: 400 IKSDVMVVVN------KLHKY----SLVEKQPKEST--ISIPSIYLELKVKLENEYAL-- 445

Query: 354 GRRFYAHRICL--------LASSDAFRAMFDG------GYREKDARDIEIPNIRWEVFE- 398
                 HR  +          S D      D       G+  K+    E    R  +F  
Sbjct: 446 ------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE----RMTLFRM 495

Query: 399 --LMMRFI-----YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 451
             L  RF+     +  +         + L+    Y          Y    D   E + + 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNA 547

Query: 452 YE---LSEAFHAISLRHTCILYI 471
                     + I  ++T +L I
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 69/464 (14%), Positives = 120/464 (25%), Gaps = 153/464 (32%)

Query: 179 LDSKNGSLQHNAAFALYG--LADNEDNVADFIRVGGVQKLQDGEFIVQATKDC------- 229
           +D + G  Q+      Y   L+  ED    F+     + +QD    + + ++        
Sbjct: 7   MDFETGEHQYQ-----YKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 230 ------------------------VAKTLKR----LEEKIH----GRVLNHLLY------ 251
                                   V + L+     L   I        +   +Y      
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 252 LMRVAEKGVQRRVA-----LAL-AHLCSPDDQRTIFIDG-GGL---ELLLGLLGSTNPKQ 301
           L    +   +  V+     L L   L      + + IDG  G     + L +  S   + 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 302 QLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNAT-LSDVTFLV-------- 352
           ++D  +    L N  +  + ++           L  Q   N T  SD +  +        
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 353 -EGRRFYA---HRICLL-----ASSDAFRAMFDGG------YREKDARDIEIPNIRWEVF 397
            E RR      +  CLL      ++ A+ A F+         R K   D         + 
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 398 ELMMRFIYTGSVDVTLDI--------AQDLLRAA----------------------DQYL 427
                   T   D    +         QDL R                        D + 
Sbjct: 291 LDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 428 LEGLKRLCEYTIAQDISLENVSSMYELSEAFHA---------ISLRHTCILY-------- 470
                +L   T   + SL  +    E  + F           I      +++        
Sbjct: 349 HVNCDKL---TTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 471 --IMEHFDKLSTRPGHSNLIQRIIPEIH-NYFAKALTKPNPHNS 511
             ++    K S            IP I+     K   +   H S
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 42/336 (12%), Positives = 107/336 (31%), Gaps = 31/336 (9%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLA--FKNDENKNQIVECNALPTLILMLRSEDSAIH 62
           +P L +  E    +V+   A     L      +  K  +V     P    +++  ++ + 
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV-----PAFQNLMKDCEAEVR 298

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAAT--DS 119
             A   +     +     +E +    + P I  L+S      +   A ++   +      
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358

Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KL 178
           +   H++        +  L+    ++R      L  + + +  +        L+P + +L
Sbjct: 359 NTIEHLLP-----LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS---LLPAIVEL 410

Query: 179 LDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLK 235
            +     ++      +  LA     +   + +    +  L D  + + +A    + K ++
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470

Query: 236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL----ALAHLCSPDDQRTIFIDGGGLELLL 291
           +  ++     +   +  M      + R   L     L+ +C  D           L  +L
Sbjct: 471 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHM-----LPTVL 525

Query: 292 GLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPP 327
            + G      + + A +L K+       +      P
Sbjct: 526 RMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP 561

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
               +  L      ++ AA   L+ L    ++   +      +P ++ M    +      
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLV---EKFGKEWAHATIIPKVLAMSGDPNYLHRMT 499

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
            +  I  L        +++     L  V+ +     +  +   A  L +      +  + 
Sbjct: 500 TLFCINVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL- 555

Query: 125 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 157
              +  V+P++E L    DV ++  +  AL  L+
Sbjct: 556 ---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 89  LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 144
           L+PV+  +    +      REAA++  G         +       A+  ++ ++    +Q
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426

Query: 145 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---DSKNGSLQHNAAFALYGLADN 200
           ++E +A+ +GR+A  +     I     L  +++        +  +  N ++ +  L + 
Sbjct: 427 VKETTAWCIGRIADSVAES--IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQ 483

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 45/336 (13%), Positives = 106/336 (31%), Gaps = 50/336 (14%)

Query: 5    IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI--- 61
            +  L  L+  +D  V + A   L TLA     + ++I   + L  LI ++RS        
Sbjct: 694  LDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISG-SILNELIGLVRSPLLQGGAL 752

Query: 62   ----------------HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105
                            +   + ++  L     +    +    +   +   +++      +
Sbjct: 753  SAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK 812

Query: 106  EAALLLGQFAATDSDCKVHIVQRGAV--------------------RPLIEMLQSPDVQL 145
            E   ++GQF     + +     R                         ++E   SP  ++
Sbjct: 813  EGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV 872

Query: 146  REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDN 203
            +  +++ALG ++        + +    +P +    +     Q+    +L  +  +     
Sbjct: 873  KSAASYALGSIS--------VGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 924

Query: 204  VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR 263
            +  ++       L+  E   + T++ VA+ L +L       +L  L   +       +  
Sbjct: 925  LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSS 984

Query: 264  VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 299
            V  A+    S   Q    +    +   L  L   + 
Sbjct: 985  VVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 48/352 (13%), Positives = 108/352 (30%), Gaps = 53/352 (15%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           IP  ++  + +  K++  A   +      +      +   + +  L  +   E+  +   
Sbjct: 176 IPKFLQFFKHSSPKIRSHAVACVNQFII-SRTQALMLHIDSFIENLFALAGDEEPEVRKN 234

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
               +  L+    +          +  ++  +     +     AL   +F  T ++  + 
Sbjct: 235 VCRALVMLLEVRMD-----RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289

Query: 125 IVQRGA-----VRPLIEMLQSPDVQLREM----------------------SAFALGRLA 157
                      +  L+  ++  D+ +  +                      SA AL  LA
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349

Query: 158 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-----EDNVADFIRVGG 212
               ++  + H   L+   +LL      ++ +    L  +A+         + + I    
Sbjct: 350 NVYRDEL-LPHILPLLK--ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL- 405

Query: 213 VQKLQDGEFIVQATKDCVAKTLKRL--------EEKIHGRVLNHLLYLMRVAEKGVQRRV 264
           +Q L D + +V++       TL R          +     ++  LL  +  + K VQ   
Sbjct: 406 IQCLSDKKALVRSI---TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462

Query: 265 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316
             A A L        +      L+ L+        K  L    A+  LA+  
Sbjct: 463 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 89  LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 144
           +  V+  +           R+AA++  G         ++  +   A+  LIE+++ P V 
Sbjct: 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 145 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLL----KLLDSKNGSLQHNAAFALYGLADN 200
           +R+ +A+ +GR+ + +       ++  L PLL    + L +    +  N  +A   LA+ 
Sbjct: 424 VRDTAAWTVGRICELLPEA--AINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEA 480

Query: 201 EDNVADF 207
               AD 
Sbjct: 481 AYEAADV 487

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 89  LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 144
           +  V+  +           R+AA++  G         ++  +   A+  LIE+++ P V 
Sbjct: 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 145 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
           +R+ +A+ +GR+ + +       ++  L PLL+ L
Sbjct: 424 VRDTAAWTVGRICELLPEA--AINDVYLAPLLQCL 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.97
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.96
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.93
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.89
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.88
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.88
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.88
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.88
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.85
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.85
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.85
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.83
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.83
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.82
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.56
3grl_A	651	General vesicular transport factor P115; vesicle t	99.55
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.52
3grl_A	651	General vesicular transport factor P115; vesicle t	99.51
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.51
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.49
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.48
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.39
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.39
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.37
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.36
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.35
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.35
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.33
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.23
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.18
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.14
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.14
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.12
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.04
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.03
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.99
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.98
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.95
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.78
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.78
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.77
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	98.72
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.71
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.71
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.7
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.69
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.66
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.65
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.63
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.62
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.58
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.55
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.55
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.52
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.4
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	98.38
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.3
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.21
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.04
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.82
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.81
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	97.6
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.53
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.45
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.42
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.35
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.22
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.93
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.9
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.86
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.76
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.68
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.61
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	96.29
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	96.17
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.99
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.83
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.73
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.73
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.62
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.6
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.58
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.55
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	95.44
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	95.44
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.37
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.25
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.88
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.68
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	94.58
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.48
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.41
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.21
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.06
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.53
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.43
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.01
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.82
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.51
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.39
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	91.86
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.79
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.29
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.33
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	90.32
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	89.84
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.7
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	88.48
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.93
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	86.89
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	86.39
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	85.72
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.05
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	82.32
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	80.28

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2e-32  Score=277.18  Aligned_cols=315  Identities=19%  Similarity=0.249  Sum_probs=271.2

Q ss_pred             CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +|++|.|+++|++ +++.+|..|+++|.|++.++++++..+++.|++|.|+.+|++++.++++.|+++|++|+.+++..|
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999975 568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      ..+.+.|+++.|+.++...+     ..+.+.++|+|.+++.+...........++++.|+.++.+++++++..++++|.+
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~  258 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  258 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999998754     3567899999999998766555555556899999999999999999999999999


Q ss_pred             Hhhccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-cchHHHHHhhcCcccccchhhhhh-hhHHHHHH
Q 010291          156 LAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAK  232 (513)
Q Consensus       156 l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~  232 (513)
                      |+.+...+ ..+.+.|+++.|+.++.+++..++..++++|++++.. +.....+.+.|+++.|+....+.. .....+.+
T Consensus       259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~  338 (510)
T 3ul1_B          259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  338 (510)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred             HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence            99877654 4566789999999999999999999999999999874 455667779999999877554322 22333333


Q ss_pred             HH--------HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchh
Q 010291          233 TL--------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       233 ~~--------~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                      ++        .....+.+.++++.|+.++++++..+|..|+++|+|++..  .+....+.+.|+++.|++++.+++++++
T Consensus       339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~  418 (510)
T 3ul1_B          339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII  418 (510)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            33        3445677889999999999999999999999999999864  3356678899999999999999999999


Q ss_pred             hhHHHHHHHhhhcc
Q 010291          303 LDGAVALFKLANKA  316 (513)
Q Consensus       303 ~~a~~~L~~l~~~~  316 (513)
                      ..++++|.++....
T Consensus       419 ~~~L~aL~nil~~~  432 (510)
T 3ul1_B          419 QVILDAISNIFQAA  432 (510)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=274.99  Aligned_cols=314  Identities=20%  Similarity=0.227  Sum_probs=262.0

Q ss_pred             CCChhHHHHhhccC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCH----------HHHHHhhcCC--
Q 010291            2 EGGIPPLVELLEFT------------DTKVQRAAAGALRTLAFKNDENKNQIVECNAL----------PTLILMLRSE--   57 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~Lv~lL~~~--   57 (513)
                      +|++|.|+++|+..            +++++.+|+++|.|++.++++......+.|++          +.+++++.+.  
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            48999999999863            37999999999999999999988888888777          6667777743  


Q ss_pred             CHH-----HHH-------HHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-----------CChHHHHHHHHHHHHh
Q 010291           58 DSA-----IHY-------EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----------CCSESQREAALLLGQF  114 (513)
Q Consensus        58 ~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l  114 (513)
                      +.+     +++       .|+++|+|++.+ +++|+.+.+.|+++.|+.++..           .++.+++.|+|+|.||
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL  227 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL  227 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence            222     444       899999999876 8899999999999999999952           2367899999999999


Q ss_pred             hcCCchhhHHHHh-cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccchhhHhcCChHHHHHHh-cCCCHHHHHHH
Q 010291          115 AATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNA  190 (513)
Q Consensus       115 ~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a  190 (513)
                      +.+++..+..+.. .|+++.|+.+|+++++++++.|+|+|+||+.+  +.++..+.+.|+++.|+++| .+++..+++.+
T Consensus       228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A  307 (458)
T 3nmz_A          228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV  307 (458)
T ss_dssp             HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence            9887767766654 56799999999999999999999999999974  45788899999999999975 56788999999


Q ss_pred             HHHHHhccc-CcchHHHHH-hhcCcccccchhhhhhh-----hHHHHHHHH-----------HHHHHHhhhhhHHHHHHH
Q 010291          191 AFALYGLAD-NEDNVADFI-RVGGVQKLQDGEFIVQA-----TKDCVAKTL-----------KRLEEKIHGRVLNHLLYL  252 (513)
Q Consensus       191 ~~~L~~l~~-~~~~~~~~~-~~g~i~~L~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~l~~Lv~l  252 (513)
                      +.+|+||+. +++++..+. ..|+++.|++.......     ......+++           ++.+.+.+.|+++.|+.+
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L  387 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  387 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence            999999998 768888888 78999988765442211     222222222           344566788999999999


Q ss_pred             HHHhhcchhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          253 MRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       253 L~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      |++++..+++.|+++|+|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.+|+.+.
T Consensus       388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999985 5668889999999999999999999999999999999999764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.3e-31  Score=272.85  Aligned_cols=314  Identities=19%  Similarity=0.247  Sum_probs=270.8

Q ss_pred             CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +|++|.|+++|+. +++.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++++++.|+++|++|+.+++..+
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence            5899999999964 569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      ..+.+.|+++.|+.++...+     ..+.+.++|+|.+++.+...........++++.|+.++.+++++++..++|+|.+
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  277 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999998654     3567899999999998766655555567899999999999999999999999999


Q ss_pred             Hhhccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-cchHHHHHhhcCcccccchhhhhh-hhHHHHHH
Q 010291          156 LAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAK  232 (513)
Q Consensus       156 l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~  232 (513)
                      ++.+...+ ..+...|+++.|+.++.+++..++..++.+|++++.. +.....+.+.|+++.|+....+.. .....+.+
T Consensus       278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~  357 (529)
T 3tpo_A          278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  357 (529)
T ss_dssp             HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence            99877654 4567789999999999999999999999999999874 455667779999998877544222 22233333


Q ss_pred             HH--------HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchh
Q 010291          233 TL--------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       233 ~~--------~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                      ++        .....+.+.++++.|+.+|.+++.+++..|+|+|+|++.+  ++....+++.|+++.|+++|.+++++++
T Consensus       358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~  437 (529)
T 3tpo_A          358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII  437 (529)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence            33        3345677889999999999999999999999999999864  3355678999999999999999999999


Q ss_pred             hhHHHHHHHhhhc
Q 010291          303 LDGAVALFKLANK  315 (513)
Q Consensus       303 ~~a~~~L~~l~~~  315 (513)
                      ..++.+|.++...
T Consensus       438 ~~~L~aL~nil~~  450 (529)
T 3tpo_A          438 QVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=5.2e-31  Score=262.65  Aligned_cols=315  Identities=17%  Similarity=0.197  Sum_probs=259.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      ..+|.++++|+++++.+|..|+++|.+++.+++..+..+.+.|+++.|+++|+++++.++..|+++|++|+.++++++..
T Consensus         2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            36899999999999999999999999999878888889999999999999999999999999999999999988999999


Q ss_pred             HHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh--------CC--------CCHHH
Q 010291           83 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--------QS--------PDVQL  145 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l--------~~--------~~~~~  145 (513)
                      +++.|+++.|+++|. ++++++++.++|+|+|++.+ ++.+..+++ |+++.|+.++        .+        .++.+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 78999999999999999977 777888888 9999999999        32        24567


Q ss_pred             HHHHHHHHHHHhhccccchhhHhc-CChHHHHHHhcC-------------------------------------------
Q 010291          146 REMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDS-------------------------------------------  181 (513)
Q Consensus       146 ~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~ll~~-------------------------------------------  181 (513)
                      ...|+|+|+||+.+++++..+.+. |+++.|+.++.+                                           
T Consensus       160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            779999999999987778888886 888888877753                                           


Q ss_pred             --------------------------------------------------------CCHHHHHHHHHHHHhcccCcch--
Q 010291          182 --------------------------------------------------------KNGSLQHNAAFALYGLADNEDN--  203 (513)
Q Consensus       182 --------------------------------------------------------~~~~~~~~a~~~L~~l~~~~~~--  203 (513)
                                                                              +++.+++.|+++|+|++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                                                    1245666788999999874322  


Q ss_pred             ----HHHHHhhcCcccccchhhhh-hhhHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHhhc------chhhhHHH
Q 010291          204 ----VADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKRL------EEKIHGRVLNHLLYLMRVAEK------GVQRRVAL  266 (513)
Q Consensus       204 ----~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~l~~Lv~lL~~~~~------~v~~~a~~  266 (513)
                          +..+.+.|+++.|++..... .....-+.+++.++      ...+..++++.|+.+|.++++      ++...+++
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence                12233578999887755432 22233333444433      334556899999999998644      57789999


Q ss_pred             HHhhccCC-CCcceeeecCCchHHHHhhhcCC-CcchhhhHHHHHHHhhhccccc
Q 010291          267 ALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKATTL  319 (513)
Q Consensus       267 aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~  319 (513)
                      +|.|+... ++....+.+.|+++.|.+++.++ ++++++.|+++|.++..+.+-+
T Consensus       400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            99999764 45677889999999999999998 9999999999999998775543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.8e-31  Score=254.00  Aligned_cols=266  Identities=20%  Similarity=0.224  Sum_probs=232.8

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA   86 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   86 (513)
                      ..+..|+++|.+++. ++++|..+.+.|++++|+.+|..           .++.++..|+++|.+|+.+++..+..+...
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            456689999999998 58999999999999999999952           247899999999999999888788877665


Q ss_pred             -CChHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHhh-cccc
Q 010291           87 -GALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHN  162 (513)
Q Consensus        87 -g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~-~~~~  162 (513)
                       |+++.|+.+|.++++++++.|+++|.||+.. ++.++..+.+.|+++.|+++| +++++++++.++.+|+||+. .+++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence             4599999999999999999999999999975 567888999999999999974 66789999999999999998 5567


Q ss_pred             chhhH-hcCChHHHHHHhcCCCH----HHHHHHHHHHHhccc----CcchHHHHHhhcCcccccchhhhhhhhHHHHHHH
Q 010291          163 QAGIA-HNGGLVPLLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT  233 (513)
Q Consensus       163 ~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~  233 (513)
                      +..+. ..|+++.|++++.++++    .++..++++|+||+.    +++++..+                          
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i--------------------------  259 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL--------------------------  259 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------------------------
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH--------------------------
Confidence            77777 68999999999987764    589999999999995    55554444                          


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291          234 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  312 (513)
Q Consensus       234 ~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  312 (513)
                             .+.|+++.|+.+|++++..+++.|+++|+|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.+|
T Consensus       260 -------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL  332 (354)
T 3nmw_A          260 -------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL  332 (354)
T ss_dssp             -------HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred             -------HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                   355688999999999999999999999999995 566888899999999999999999999999999999999


Q ss_pred             hhccc
Q 010291          313 ANKAT  317 (513)
Q Consensus       313 ~~~~~  317 (513)
                      +.+.+
T Consensus       333 ~~~~~  337 (354)
T 3nmw_A          333 MANRP  337 (354)
T ss_dssp             HTTCC
T ss_pred             HcCCH
Confidence            98754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=1.7e-30  Score=262.89  Aligned_cols=312  Identities=19%  Similarity=0.302  Sum_probs=264.2

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .++.+++.+++++++.|..|+..++++... ...-...+++.|+||.|+++|+ ++++.++..|+|+|+||+.++++.++
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            588999999999999999999999987642 2233578889999999999998 55689999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC-----HHHHHHHHHHHHHH
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-----VQLREMSAFALGRL  156 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l  156 (513)
                      .+++.|+++.|+.+|.+++.++++.|+|+|+|++.++++.+..+.+.|+++.|+.++..++     ..+...++++|.|+
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888999999999999999999998764     35788999999999


Q ss_pred             hhccccchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HHHHhhcCcccccchhhhhh-hhHHHHHHH
Q 010291          157 AQDMHNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQ-ATKDCVAKT  233 (513)
Q Consensus       157 ~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~  233 (513)
                      +.+......+ ...++++.|++++.+++++++..++++|++|+.+.... ..+...|+++.|+....... ........+
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9877665444 34678899999999999999999999999999866555 44568888888876444221 111222222


Q ss_pred             H--------HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhh
Q 010291          234 L--------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLD  304 (513)
Q Consensus       234 ~--------~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~  304 (513)
                      +        .....+.+.++++.|+.+|++++..++..|+|+|+|++.+.. .+..+.+.|+++.|+.++.+++.++|..
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  377 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE  377 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Confidence            2        333556788999999999999999999999999999987644 6778889999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 010291          305 GAVALFKLANK  315 (513)
Q Consensus       305 a~~~L~~l~~~  315 (513)
                      |+++|.|++.+
T Consensus       378 Aa~aL~Nl~~~  388 (510)
T 3ul1_B          378 AAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999999875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=2.6e-30  Score=258.47  Aligned_cols=311  Identities=15%  Similarity=0.200  Sum_probs=252.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~   80 (513)
                      .+.++.|+++|+++++.++..|+++|.+++.++++++..+.+.|+|+.|+++|+++++++++.|+++|+||+.+ +++++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            47899999999999999999999999999988999999999999999999999999999999999999999985 68999


Q ss_pred             HHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC------------------CC
Q 010291           81 KEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ------------------SP  141 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~------------------~~  141 (513)
                      ..+.+.|+++.|+.+|.+ .+.++++.++++|+||+. .++++..+++ ++++.|++++.                  .+
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence            999999999999999997 578899999999999986 5677777775 57999999871                  23


Q ss_pred             CHHHHHHHHHHHHHHhhcccc-chhhHhcCC-hHHHHHHhcC------CCHHHHHHHHHHHHhcccCcchH-------H-
Q 010291          142 DVQLREMSAFALGRLAQDMHN-QAGIAHNGG-LVPLLKLLDS------KNGSLQHNAAFALYGLADNEDNV-------A-  205 (513)
Q Consensus       142 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~-i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~-------~-  205 (513)
                      +++++++|+++|.||+.++++ |..+.+.++ ++.|+.++.+      .+...+++++++|+||+...+..       . 
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            689999999999999987654 888887555 5689999874      46788999999999999642110       0 


Q ss_pred             ---------HHHhhcCcccccch---------hh--hhhhhHHHHHHHHHHH------------HHHhhhhhHHHHHHHH
Q 010291          206 ---------DFIRVGGVQKLQDG---------EF--IVQATKDCVAKTLKRL------------EEKIHGRVLNHLLYLM  253 (513)
Q Consensus       206 ---------~~~~~g~i~~L~~~---------~~--~~~~~~~~~~~~~~~~------------~~~~~~~~l~~Lv~lL  253 (513)
                               .....++++.|.+.         ..  ........+++++.++            ..+.+.++++.|+.+|
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                     01134455544331         11  1122334444555444            1335578899999999


Q ss_pred             HHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCC--------CcchhhhHHHHHHHhhhc
Q 010291          254 RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST--------NPKQQLDGAVALFKLANK  315 (513)
Q Consensus       254 ~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~~L~~l~~~  315 (513)
                      .+++..++..|+++|.||+.++..+..+ ..|+++.|+++|.++        +.+++..|+++|.|++..
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~  433 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE  433 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999988877655 789999999999875        346778899999999754

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.97  E-value=6.4e-31  Score=240.97  Aligned_cols=160  Identities=21%  Similarity=0.346  Sum_probs=142.1

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccCHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  414 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  414 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||++++.  |+....|.++++++++|+.+++|+|||.+.++.+
T Consensus        23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~  102 (256)
T 3hve_A           23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED  102 (256)
T ss_dssp             HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C
T ss_pred             HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh
Confidence            46788999999999999999999999999999999999999887  6778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHH
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE  494 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~  494 (513)
                      ++.+++.+|++|++++|++.|+++|.+.++++||+.++.+|+.|++++|.+.|.+||.+||.++.++++|.+|+.+.+.+
T Consensus       103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~  182 (256)
T 3hve_A          103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKE  182 (256)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHH
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997766555


Q ss_pred             HH
Q 010291          495 IH  496 (513)
Q Consensus       495 l~  496 (513)
                      +.
T Consensus       183 lL  184 (256)
T 3hve_A          183 VI  184 (256)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=1.4e-29  Score=257.81  Aligned_cols=312  Identities=19%  Similarity=0.298  Sum_probs=265.1

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .++.+++.+.+++++.+..|+..++++.. ........+++.|++|.|+++|. ++++.++..|+++|++++.+++..+.
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            57889999999999999999999998754 23344678899999999999997 56799999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC-----HHHHHHHHHHHHHH
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-----VQLREMSAFALGRL  156 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l  156 (513)
                      .+++.|+++.|+.++.+++.++++.|+|+|+|++.++++.+..+.+.|+++.|+.++..++     ..+...++|+|.++
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888999999999999999999998754     45788999999999


Q ss_pred             hhccccchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HHHHhhcCcccccchhhhhh-hhHHHHHHH
Q 010291          157 AQDMHNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQ-ATKDCVAKT  233 (513)
Q Consensus       157 ~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~  233 (513)
                      +.+......+ ...++++.|+.++.++++.++..++++|.+++.+.... ..+...|+++.|+....... .....+..+
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a  316 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  316 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence            9877654443 44688999999999999999999999999999866554 44568899988876544221 111222222


Q ss_pred             H--------HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhh
Q 010291          234 L--------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLD  304 (513)
Q Consensus       234 ~--------~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~  304 (513)
                      +        .....+.+.|+++.|+.+|.++++.++..|+|+|+|++.+.. .+..+.+.|+++.|+.++.+++++++..
T Consensus       317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  396 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA  396 (529)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence            2        233556788999999999999999999999999999987644 6677889999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 010291          305 GAVALFKLANK  315 (513)
Q Consensus       305 a~~~L~~l~~~  315 (513)
                      |+|+|.+++.+
T Consensus       397 A~~aL~nl~~~  407 (529)
T 3tpo_A          397 AAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            99999999875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=4.1e-30  Score=257.02  Aligned_cols=320  Identities=20%  Similarity=0.240  Sum_probs=255.3

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+||.|+++|+++++.++..|+++|.+++.+ +++++..+++.|+|+.|+++|.+ .+.++++.|+++|++|+.. +.+
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~  167 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSI  167 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            58999999999999999999999999999985 68999999999999999999996 6789999999999999975 777


Q ss_pred             HHHHHhCCChHHHHHhhc------------------CCChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhCC
Q 010291           80 KKEVLAAGALQPVIGLLS------------------SCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS  140 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~  140 (513)
                      +..+++ ++++.|++++.                  ..+.++++.|+++|.||+..+++.+..+.+ .|+++.|+.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            888885 57999999872                  235799999999999999888888888887 4567899999864


Q ss_pred             ------CCHHHHHHHHHHHHHHhhcccc--------------------------chhhHhcCChHHHHHHhc-CCCHHHH
Q 010291          141 ------PDVQLREMSAFALGRLAQDMHN--------------------------QAGIAHNGGLVPLLKLLD-SKNGSLQ  187 (513)
Q Consensus       141 ------~~~~~~~~a~~~L~~l~~~~~~--------------------------~~~~~~~~~i~~L~~ll~-~~~~~~~  187 (513)
                            .+...+++|+++|+||+...+.                          ...+.+.++++.|+.++. +.++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                  4678999999999999965210                          112233345667888885 5679999


Q ss_pred             HHHHHHHHhcccCcc-----hHHHHHhhcCcccccchhhhh-hhhHHHHHHHHHHH------HHHhhhhhHHHHHHHHHH
Q 010291          188 HNAAFALYGLADNED-----NVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKRL------EEKIHGRVLNHLLYLMRV  255 (513)
Q Consensus       188 ~~a~~~L~~l~~~~~-----~~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~l~~Lv~lL~~  255 (513)
                      ++|+++|+|||....     .+..+.+.++++.|+++.... ......+..++.++      ...+..++++.|+.+|.+
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~  406 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG  406 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcC
Confidence            999999999987542     222344578888887755532 22333344444444      334577899999999998


Q ss_pred             h--------hcchhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcCC--CcchhhhHHHHHHHhhhccccccccC
Q 010291          256 A--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANKATTLSSVD  323 (513)
Q Consensus       256 ~--------~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~i~  323 (513)
                      +        +.+++..|+++|+|++. ++++++.+.+.|+|+.|++++.+.  ++.+++.|+++|+++..+......+.
T Consensus       407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~k  485 (584)
T 3l6x_A          407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE  485 (584)
T ss_dssp             SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            6        34678899999999965 566888999999999999999875  88899999999999987766554443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.97  E-value=2.4e-29  Score=256.94  Aligned_cols=315  Identities=22%  Similarity=0.269  Sum_probs=272.3

Q ss_pred             CCChhHHHHhhccCC-HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      .|++|.|+++|++++ +.++..|+++|.+++.++++++..+.+.|+++.|+.+|.++++.++..|+++|++++.+++..+
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            589999999999886 9999999999999999889999999999999999999999999999999999999999989999


Q ss_pred             HHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           81 KEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ..+.+.|+++.|+.++ .+.++.++..++|+|.+++...+... .....|+++.|+.++.++++.++..++++|.+++.+
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999 66789999999999999997754433 344579999999999999999999999999999977


Q ss_pred             cccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-cchHHHHHhhcCcccccchhhhh--hhhHHHHHHHHH
Q 010291          160 MHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIV--QATKDCVAKTLK  235 (513)
Q Consensus       160 ~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~--~~~~~~~~~~~~  235 (513)
                      .+.+ ..+.+.|+++.|+.++.++++.++..|+++|++++.. +.....+.+.|+++.|+......  ......+..++.
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            6654 5677889999999999999999999999999999984 44555677888888887654432  222333333333


Q ss_pred             --------HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchhhhH
Q 010291          236 --------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDG  305 (513)
Q Consensus       236 --------~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  305 (513)
                              .+..+.+.++++.|+.+|.++++.++..|+++|++++..  ++....+.+.|+++.|+.++.++++.++..+
T Consensus       355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a  434 (528)
T 4b8j_A          355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC  434 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence                    334566779999999999999999999999999999875  4566678889999999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 010291          306 AVALFKLANKAT  317 (513)
Q Consensus       306 ~~~L~~l~~~~~  317 (513)
                      +++|.+++....
T Consensus       435 l~~L~~l~~~~~  446 (528)
T 4b8j_A          435 LEGLENILKVGE  446 (528)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987644

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.97  E-value=5.9e-29  Score=254.07  Aligned_cols=312  Identities=19%  Similarity=0.301  Sum_probs=270.3

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .++.|++.|.++++.++..|+++|.+++.+.. .....+++.|+++.|+++|.+++ +.++..|+++|++++.+++..+.
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            48899999999999999999999999976554 67788899999999999999876 99999999999999999899999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-CCCCHHHHHHHHHHHHHHhhcc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      .+.+.|+++.|+.++.+++++++..|+|+|++++..++..+..+.+.|+++.|+.++ .++++.++..++++|.+|+.+.
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999988888889999999999999999 5679999999999999999887


Q ss_pred             ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HHHHhhcCcccccchhhhhh-hhHHHHHHHH----
Q 010291          161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTL----  234 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~----  234 (513)
                      +........++++.|+.++.++++.++..++++|++++...... ..+.+.|+++.|+....... .....+..++    
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            66666667899999999999999999999999999999866554 46668899998876544221 2222222233    


Q ss_pred             ----HHHHHHhhhhhHHHHHHHHHHh-hcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHH
Q 010291          235 ----KRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA  308 (513)
Q Consensus       235 ----~~~~~~~~~~~l~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  308 (513)
                          .....+.+.++++.|+.+|.++ ++.++..|+++|+|++.+.. ....+.+.|+++.|+.++.++++.++..|+++
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence                2334566789999999999998 99999999999999987543 45577788999999999999999999999999


Q ss_pred             HHHhhhc
Q 010291          309 LFKLANK  315 (513)
Q Consensus       309 L~~l~~~  315 (513)
                      |.+++..
T Consensus       395 L~nl~~~  401 (528)
T 4b8j_A          395 ISNATSG  401 (528)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9999876

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=223.55  Aligned_cols=147  Identities=34%  Similarity=0.522  Sum_probs=136.0

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++|+|+....|.++++++++|+.+++|+|+|.++++.+++
T Consensus        26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~  105 (172)
T 3htm_A           26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA  105 (172)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred             HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG  483 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  483 (513)
                      .+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++++|++.|.+||.+||.++.++++
T Consensus       106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~  172 (172)
T 3htm_A          106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  172 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999988764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=1.2e-29  Score=261.94  Aligned_cols=314  Identities=17%  Similarity=0.133  Sum_probs=261.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCc-----------------------------hhH---HHHHhcCCHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-----------------------------ENK---NQIVECNALPT   49 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i~~   49 (513)
                      .|++|.|+++|+++++.++..|+++|.|++.+.+                             ..+   ..+++.|+++.
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            4789999999999999999999999999998542                             122   67889999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH--HHh
Q 010291           50 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH--IVQ  127 (513)
Q Consensus        50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~  127 (513)
                      |+++|+++++.+++.|+|+|+|++.+ +++|..+++.|+++.|+.++.++++..++.|+|+|.|++....+....  ...
T Consensus       500 LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          500 LCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            99999999999999999999999975 678999999999999999999999999999999999998653322110  012


Q ss_pred             cCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhcc-ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH
Q 010291          128 RGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA  205 (513)
Q Consensus       128 ~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  205 (513)
                      .|++++|+.+|.++ +...+..|+++|.||+..+ +.+..+++.|+++.|+.++.++++.++..|+++|+||+.+++.+.
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~  658 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK  658 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence            36999999999876 4455678999999999875 567889999999999999999999999999999999999988888


Q ss_pred             HHHh-hcCcccccchhhhhh-hhHHHHHHHH--------HHHHHHhh-hhhHHHHHHHHHHhhcchhhhHHHHHhhccCC
Q 010291          206 DFIR-VGGVQKLQDGEFIVQ-ATKDCVAKTL--------KRLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  274 (513)
Q Consensus       206 ~~~~-~g~i~~L~~~~~~~~-~~~~~~~~~~--------~~~~~~~~-~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  274 (513)
                      .+.. .|.++.|+.+..+.. .....+.+++        ...+.+.+ .++++.|+.+|++++.++|..|+|++.|++..
T Consensus       659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            8885 677887766444322 2222222322        34455666 89999999999999999999999999999764


Q ss_pred             -CCcceeeecCCchHHHHhhhcCC---CcchhhhHHHHHHHhhhcc
Q 010291          275 -DDQRTIFIDGGGLELLLGLLGST---NPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       275 -~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~  316 (513)
                       ++....+.+.|+++.|.++++.+   ++++.+.|..+|.++....
T Consensus       739 s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          739 GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence             44678899999999999999754   7889999999999997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=9.6e-30  Score=262.70  Aligned_cols=309  Identities=20%  Similarity=0.223  Sum_probs=255.5

Q ss_pred             hhHHHHhhccC--CHHHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh----
Q 010291            5 IPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP----   77 (513)
Q Consensus         5 i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~----   77 (513)
                      ++.++++|.++  +++++..|+++|.+++. .++.+..++ +.|+++.|+++|+++++.++..|+++|+|++.+.+    
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~  457 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM  457 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence            45677888887  88999999999999998 677777777 47999999999999999999999999999998642    


Q ss_pred             -------------------------hHH---HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcC
Q 010291           78 -------------------------NIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG  129 (513)
Q Consensus        78 -------------------------~~~---~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  129 (513)
                                               ..+   +.+++.|+++.|+.++.++++++++.|+|+|.|++ .+++++..+++.|
T Consensus       458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~G  536 (810)
T 3now_A          458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEG  536 (810)
T ss_dssp             CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCC
Confidence                                     123   67889999999999999999999999999999998 5577899999999


Q ss_pred             ChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh---HhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccC-cchH
Q 010291          130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI---AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADN-EDNV  204 (513)
Q Consensus       130 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~-~~~~  204 (513)
                      ++++|+.+++++++..++.|+|+|.|++.+......+   ...+++++|+.+|.++. ...+..|+++|.||+.. ++.+
T Consensus       537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~  616 (810)
T 3now_A          537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR  616 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999999754433222   12469999999998663 34557899999999986 4677


Q ss_pred             HHHHhhcCcccccchhhhhh-hhHHHHHHHHHH-------HHHHhh-hhhHHHHHHHHHHhhcchhhhHHHHHhhccC-C
Q 010291          205 ADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKR-------LEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCS-P  274 (513)
Q Consensus       205 ~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~-------~~~~~~-~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~  274 (513)
                      ..+++.|+++.|+....... ....-...++.+       .....+ .+.++.|+.++.+++..+|..|+|+|+|++. +
T Consensus       617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s  696 (810)
T 3now_A          617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS  696 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence            78889999999887555322 222222222222       222333 6899999999999999999999999999998 4


Q ss_pred             CCcceeeec-CCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          275 DDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       275 ~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +...+.+++ .|+++.|++++.++++++|..|+|++.|++.+
T Consensus       697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            556666777 89999999999999999999999999999874

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.96  E-value=1.8e-28  Score=250.47  Aligned_cols=316  Identities=20%  Similarity=0.225  Sum_probs=270.3

Q ss_pred             CCChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      .|++|.|+++|+++ ++.++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++..+
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            58999999999987 89999999999999999888899999999999999999999999999999999999999888899


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      ..+...|+++.|+.++.+.+.+++..++|+|.+++.+...........++++.|+.++.++++.++..++++|.+++...
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999775333445566899999999999999999999999999999765


Q ss_pred             c-cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchhhhh-hhhHHHHHHHHH--
Q 010291          161 H-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLK--  235 (513)
Q Consensus       161 ~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~--  235 (513)
                      + ....+.+.|+++.|+.++.++++.++..++++|++++... .....+...|+++.|+...... ......+..++.  
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l  368 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI  368 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4 4566777899999999999999999999999999999754 4455566788888876644322 222223333333  


Q ss_pred             ------HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--C--CcceeeecCCchHHHHhhhcCCCcchhhhH
Q 010291          236 ------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D--DQRTIFIDGGGLELLLGLLGSTNPKQQLDG  305 (513)
Q Consensus       236 ------~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  305 (513)
                            .+..+.+.++++.|+.+|.++++.++..|+++|++++..  +  +....+.+.|+++.|+.++.+.++.++..+
T Consensus       369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  448 (530)
T 1wa5_B          369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT  448 (530)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence                  334456788999999999999999999999999999863  3  455667789999999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 010291          306 AVALFKLANKAT  317 (513)
Q Consensus       306 ~~~L~~l~~~~~  317 (513)
                      +++|.+++....
T Consensus       449 l~aL~~l~~~~~  460 (530)
T 1wa5_B          449 LDALENILKMGE  460 (530)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999999987644

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.96  E-value=2e-30  Score=240.74  Aligned_cols=159  Identities=23%  Similarity=0.408  Sum_probs=142.8

Q ss_pred             hhcccCCCcccEEEEec---CeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecC------CCCHHHHHHHHHHHhcC
Q 010291          337 DQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYTG  407 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Y~~  407 (513)
                      +.++.++.++||++.++   |+.|++||.||+++|+||++||+++|+|+....|.++      ++++++|+.+++|+|||
T Consensus        24 ~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg  103 (279)
T 3i3n_A           24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG  103 (279)
T ss_dssp             HHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred             HHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence            45778899999999998   8999999999999999999999999999999999998      89999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhh
Q 010291          408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL  487 (513)
Q Consensus       408 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l  487 (513)
                      .+.++.+++.+++.+|++|++++|++.|+++|.+.++++||+.++.+|+.|+++.|.+.|.+||.+||.++..+++|.+|
T Consensus       104 ~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L  183 (279)
T 3i3n_A          104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL  183 (279)
T ss_dssp             EEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred             CcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHH
Q 010291          488 IQRIIPEI  495 (513)
Q Consensus       488 ~~~~~~~l  495 (513)
                      +.+.+.++
T Consensus       184 ~~~~l~~l  191 (279)
T 3i3n_A          184 PFHLIRDW  191 (279)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            76544433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.96  E-value=3.8e-28  Score=248.03  Aligned_cols=314  Identities=18%  Similarity=0.253  Sum_probs=268.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .+.++.+++.|+++++.++..|+..|.++.... ......+++.|+++.|+++|.++ ++.++..|+++|++++.+++..
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            367899999999999999999999999997642 44567788999999999999987 8999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+++.|+++.|+.++.+++++++..|+++|++++..++..+..+...|+++.|+.++.++++.++..++++|.+|+.+
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999988888888889999999999999999999999999999999987


Q ss_pred             c-ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHH
Q 010291          160 M-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKR  236 (513)
Q Consensus       160 ~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~  236 (513)
                      . +........++++.|+.++.++++.++..++++|.+|+... +....+.+.|+++.|+....... .....+..++.+
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            6 55556667899999999999999999999999999999754 45666778899988876544221 112222222222


Q ss_pred             --------HHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcCCCcchhhhHHH
Q 010291          237 --------LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV  307 (513)
Q Consensus       237 --------~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  307 (513)
                              ...+.+.++++.|+.+|.++++.++..|+++|++++... +....+.+.|+++.|+.++.++++.++..|++
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  405 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW  405 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence                    234466789999999999999999999999999999754 34556778899999999999999999999999


Q ss_pred             HHHHhhhc
Q 010291          308 ALFKLANK  315 (513)
Q Consensus       308 ~L~~l~~~  315 (513)
                      +|.+++..
T Consensus       406 aL~~l~~~  413 (530)
T 1wa5_B          406 AISNASSG  413 (530)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=5.9e-28  Score=241.78  Aligned_cols=314  Identities=19%  Similarity=0.217  Sum_probs=265.2

Q ss_pred             CChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            3 GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         3 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      |+++.|+++|+++ ++.++..|+++|.+++.++++....+.+.|+++.|+++|+++++.+|..|+++|++++.+++..+.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            7899999999988 899999999999999998888888889999999999999999999999999999999999888999


Q ss_pred             HHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      .+.+.|+++.|+.++.+ .+.+++..++++|++++... +.....+. .++++.|+.++.++++.++..++++|.+++.+
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            99999999999999996 68999999999999999765 43333333 78999999999999999999999999999976


Q ss_pred             c-ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch-HHHHHhhcCcccccchhhhh-hhhHHHHHHHHH-
Q 010291          160 M-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIV-QATKDCVAKTLK-  235 (513)
Q Consensus       160 ~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~-  235 (513)
                      . +.+..+...|+++.|+.++.++++.++..++++|++++...+. ...+.+.|+++.|+...... ......+..++. 
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~  302 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN  302 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5 4456677889999999999999999999999999999986544 34466778888776644321 122222223332 


Q ss_pred             -------HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchhhhHH
Q 010291          236 -------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA  306 (513)
Q Consensus       236 -------~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  306 (513)
                             ....+.+.++++.|+.+|+++++.+|..|+++|++++..  ++....+.+.|+++.|++++.++++.++..++
T Consensus       303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  382 (450)
T 2jdq_A          303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL  382 (450)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence                   334456679999999999999999999999999999864  34555667889999999999999999999999


Q ss_pred             HHHHHhhhccc
Q 010291          307 VALFKLANKAT  317 (513)
Q Consensus       307 ~~L~~l~~~~~  317 (513)
                      ++|.+++....
T Consensus       383 ~aL~~l~~~~~  393 (450)
T 2jdq_A          383 NGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhch
Confidence            99999987644

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=3.3e-28  Score=242.42  Aligned_cols=271  Identities=18%  Similarity=0.192  Sum_probs=228.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  125 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  125 (513)
                      .++.++.+|++++++++..|+++|.+++.+++..+..+.+.|+++.|+.+|.+++++++..|+++|.||+.++++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999998888888899999999999999999999999999999999998878999999


Q ss_pred             HhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc--------C--------CCHHHHH
Q 010291          126 VQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--------S--------KNGSLQH  188 (513)
Q Consensus       126 ~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--------~--------~~~~~~~  188 (513)
                      ++.|+++.|+++|+ ++++++++.++|+|+||+.+++.+..+++ |+++.|++++.        +        .+..+..
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 78999999999999999999888888888 99999999993        2        2456777


Q ss_pred             HHHHHHHhcccCcchHHHHHhh-cCcccccchhhhh--------hhhHHHH--HHHH-----------------------
Q 010291          189 NAAFALYGLADNEDNVADFIRV-GGVQKLQDGEFIV--------QATKDCV--AKTL-----------------------  234 (513)
Q Consensus       189 ~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~~~~~~--------~~~~~~~--~~~~-----------------------  234 (513)
                      .|+++|+|||.+++++..+.+. |+++.|+......        .....|+  ..++                       
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            9999999999988788888887 9999887654421        1111111  1110                       


Q ss_pred             --------------------------------HHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCc----
Q 010291          235 --------------------------------KRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQ----  277 (513)
Q Consensus       235 --------------------------------~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~----  277 (513)
                                                      +..+.+++.++++.|+.+|++ .++.+++.|+|+|+|+|.+...    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                            011234567889999999988 4688999999999999986532    


Q ss_pred             --ceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          278 --RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       278 --~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                        +..+.+.|++|.|++++.+++++++..|+|+|.+++.+..
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~  363 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence              3345578999999999999999999999999999987643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=2.5e-28  Score=232.25  Aligned_cols=243  Identities=21%  Similarity=0.251  Sum_probs=211.7

Q ss_pred             CCChhHHHHhhcc-----------CCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcCCCHHHHHHHHHHH
Q 010291            2 EGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRSEDSAIHYEAVGVI   69 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~a~~~L   69 (513)
                      .|+++.|+.+|.+           .++.+|.+|+++|.+++.+++.++..+... |+|+.|+++|+++++++++.|+++|
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  151 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  151 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            5899999999953           247899999999999999777788888654 5599999999999999999999999


Q ss_pred             HHhhcC-ChhHHHHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhCCCCH---
Q 010291           70 GNLVHS-SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV---  143 (513)
Q Consensus        70 ~~l~~~-~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~---  143 (513)
                      ++|+.. ++.++..+.+.|+++.|+++| ++.+.++++.|+++|+||+..+++++..+. ..|+++.|+.++.++++   
T Consensus       152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~  231 (354)
T 3nmw_A          152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  231 (354)
T ss_dssp             HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred             HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence            999985 678899999999999999974 667889999999999999976667677776 78999999999997654   


Q ss_pred             -HHHHHHHHHHHHHhh----ccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCccccc
Q 010291          144 -QLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQ  217 (513)
Q Consensus       144 -~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~  217 (513)
                       ++++.|+++|+||+.    +++++..+.+.|+++.|+++|.+++..+++.|+++|+|++. +++++..+.         
T Consensus       232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~---------  302 (354)
T 3nmw_A          232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW---------  302 (354)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH---------
Confidence             599999999999996    67778889999999999999999999999999999999995 555555554         


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc
Q 010291          218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ  277 (513)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~  277 (513)
                                              +.|+++.|+.+|++++..+++.|+++|.||+...+.
T Consensus       303 ------------------------~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          303 ------------------------DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             ------------------------HTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             ------------------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence                                    455788899999999999999999999999876553

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.7e-27  Score=218.85  Aligned_cols=241  Identities=28%  Similarity=0.370  Sum_probs=221.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      |+++.|+++|++++++++..|+++|.+++.++++++..+.+.|+++.|+++|++++++++..|+++|++++.+++..+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67999999999999999999999999999988889999999999999999999999999999999999999988999999


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      +.+.|+++.|+.++.+++++++..++++|.+++..+++.+..+.+.|+++.|+++++++++.++..++++|++++.+.+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999988888899999999999999999999999999999999999986554


Q ss_pred             -chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch-HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          163 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       163 -~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                       +..+.+.|+++.|+.++.++++.++..++++|++++..... ...                                 +
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------------------------------l  208 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA---------------------------------I  208 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH---------------------------------H
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH---------------------------------H
Confidence             46788899999999999999999999999999999974433 222                                 2


Q ss_pred             hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC
Q 010291          241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  276 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (513)
                      .+.++++.|+.+++++++.++..|+++|+|++....
T Consensus       209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            356688999999999999999999999999986544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=1.5e-26  Score=231.61  Aligned_cols=311  Identities=17%  Similarity=0.258  Sum_probs=259.0

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhc--cCchhHHHHHhc-CCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVEC-NALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .++.+++.|+++++.+|..|+..|+++..  .++.. ..+++. |+++.|+++|+++ ++.++..|+++|.+++.++++.
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~   99 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ   99 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            38899999999999999999999999864  23333 445666 9999999999987 8999999999999999987888


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~  158 (513)
                      ...+.+.|+++.|+.++.+++++++..|+++|++++..++..+..+.+.|+++.|+.++++ +++.++..++++|++++.
T Consensus       100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~  179 (450)
T 2jdq_A          100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR  179 (450)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence            8888899999999999999999999999999999998888888888999999999999996 689999999999999997


Q ss_pred             cc-ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchhhhh-hhhHHHHHHHHH
Q 010291          159 DM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLK  235 (513)
Q Consensus       159 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~  235 (513)
                      +. +........++++.|++++.++++.++..++++|.+++.+. +....+...|+++.|+...... ......+..++.
T Consensus       180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  259 (450)
T 2jdq_A          180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG  259 (450)
T ss_dssp             CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence            65 33222223789999999999999999999999999999854 5556667888888887644321 111222222332


Q ss_pred             H--------HHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcCCCcchhhhHH
Q 010291          236 R--------LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGA  306 (513)
Q Consensus       236 ~--------~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  306 (513)
                      +        .+.+.+.++++.|+.+|+++++.++..|+++|++++.+. +....+.+.|+++.|++++.++++.+|..|+
T Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            2        233456789999999999999999999999999999754 4555677789999999999999999999999


Q ss_pred             HHHHHhhhc
Q 010291          307 VALFKLANK  315 (513)
Q Consensus       307 ~~L~~l~~~  315 (513)
                      ++|.+++..
T Consensus       340 ~~L~~l~~~  348 (450)
T 2jdq_A          340 WAITNATSG  348 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999999875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1e-26  Score=213.78  Aligned_cols=238  Identities=24%  Similarity=0.356  Sum_probs=213.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      ...+.++++|++++++++..|+++|.++...+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.+++..+..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            35788999999999999999999998876657788889999999999999999999999999999999999988999999


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-c
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-H  161 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~  161 (513)
                      +.+.|+++.|+.++.+++++++..|+++|.|++...+.....+.+.|+++.|+++++++++.++..++++|++++.+. .
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999776555488899999999999999999999999999999999765 4


Q ss_pred             cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                      .+..+.+.|+++.|++++.++++.++..++++|++++... +....+                                 
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---------------------------------  218 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV---------------------------------  218 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH---------------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH---------------------------------
Confidence            4566788999999999999999999999999999999644 333333                                 


Q ss_pred             hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                      .+.++++.|+.+++++++.++..|+++|.+++.
T Consensus       219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            345688899999999999999999999999975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=7.3e-27  Score=214.69  Aligned_cols=243  Identities=29%  Similarity=0.372  Sum_probs=219.8

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      |.++.|+++|.+++++++..|+++|.+++.+++..+..+.+.|+++.|+.++.+++++++..++++|.+++..+++.+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            56899999999999999999999999999988888999999999999999999999999999999999999888899999


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh-hccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      +.+.|+++.|+.++++++++++..++++|.+++ .+++.+..+.+.|+++.|++++.++++.++..++++|++++...+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 5556788888999999999999999999999999999999985544


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcceeee
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFI  282 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~  282 (513)
                      ...                                .+.+.++++.|+.++.++++.++..|+++|++++.. +..+..+.
T Consensus       162 ~~~--------------------------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  209 (252)
T 4hxt_A          162 AIK--------------------------------AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV  209 (252)
T ss_dssp             HHH--------------------------------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred             HHH--------------------------------HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            321                                223566899999999999999999999999999974 44677888


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL  319 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  319 (513)
                      +.|+++.|++++.++++.++..|+++|.++.......
T Consensus       210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999999875543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.95  E-value=1.1e-27  Score=226.50  Aligned_cols=147  Identities=34%  Similarity=0.522  Sum_probs=130.7

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++++|+....|.++++++++|+.+|+|+|||.++++.+++
T Consensus       166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~  245 (312)
T 3hqi_A          166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA  245 (312)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred             HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG  483 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  483 (513)
                      .+++.+|++|++++|+..|+++|.+.++.+||..++.+|+.|++..|++.|++||.+||.++.++++
T Consensus       246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=2.7e-27  Score=231.72  Aligned_cols=242  Identities=21%  Similarity=0.252  Sum_probs=209.8

Q ss_pred             CCChhHHHHhhcc-----------CCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcCCCHHHHHHHHHHH
Q 010291            2 EGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRSEDSAIHYEAVGVI   69 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~a~~~L   69 (513)
                      .|++++|+.+|..           .++.++.+|+++|.+++.+++.++..+... |+|+.|+++|.+++++++..|+++|
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  267 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  267 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence            5899999999952           346789999999999999777788777654 5599999999999999999999999


Q ss_pred             HHhhcC-ChhHHHHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhCCCCH---
Q 010291           70 GNLVHS-SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV---  143 (513)
Q Consensus        70 ~~l~~~-~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~---  143 (513)
                      ++|+.. ++.++..+.+.|+++.|+++| .+.+.++++.++.+|+||+..+++.+..+. ..|+++.|+.++.++++   
T Consensus       268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~  347 (458)
T 3nmz_A          268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  347 (458)
T ss_dssp             HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred             HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence            999985 678899999999999999975 557889999999999999975666677776 78999999999997654   


Q ss_pred             -HHHHHHHHHHHHHhh----ccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCccccc
Q 010291          144 -QLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQ  217 (513)
Q Consensus       144 -~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~  217 (513)
                       ++++.|+++|+||+.    +++++..+.+.|+++.|+.+|.+++..++..|+++|+|++. +++++..+.         
T Consensus       348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~---------  418 (458)
T 3nmz_A          348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW---------  418 (458)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHH---------
Confidence             599999999999995    66778888999999999999999999999999999999995 565555554         


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC
Q 010291          218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  276 (513)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (513)
                                              +.|+++.|+.+|++++..+++.|+++|.||+...+
T Consensus       419 ------------------------~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          419 ------------------------DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             ------------------------HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             ------------------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence                                    45578889999999999999999999999987644

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=9.1e-27  Score=238.18  Aligned_cols=307  Identities=19%  Similarity=0.198  Sum_probs=256.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.|+++|+++++.++..|+++|.+++.+++..+..+.+.|+++.|+++|.+++..++..++.+|.+++.++++.+.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            48899999999999999999999999999997778889999999999999999999999999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           82 EVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      .+.+.|+++.|+.++++.+. ..+..++.+|.+++. ++..+..+.+.|+++.|+.+++++++.++..++++|.+++.+.
T Consensus       180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  258 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence            99999999999999987654 556678899999985 5677888999999999999999999999999999999999876


Q ss_pred             ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-cchHHHHHhhcCcccccchhhhhh---hhHHHHHHHHHH
Q 010291          161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ---ATKDCVAKTLKR  236 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~---~~~~~~~~~~~~  236 (513)
                      ....  ...++++.|++++.++++.++..++++|++++.+ ++++..+.+.|+++.|++......   ........++.+
T Consensus       259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            4433  2347889999999999999999999999999985 457888889999999887554322   222222233332


Q ss_pred             H-----------HHHhhhhhHHHHHHHHHHhh-cchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhh
Q 010291          237 L-----------EEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD  304 (513)
Q Consensus       237 ~-----------~~~~~~~~l~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  304 (513)
                      +           ..+.+.++++.|+.+|++++ +.++..++++|+|++.++..+..+.+.|+++.|++++.++++++|..
T Consensus       337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  416 (529)
T 1jdh_A          337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  416 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            2           34566788999999999876 58999999999999998888888889999999999999999999999


Q ss_pred             HHHHHHH
Q 010291          305 GAVALFK  311 (513)
Q Consensus       305 a~~~L~~  311 (513)
                      ++|++.+
T Consensus       417 a~~~l~n  423 (529)
T 1jdh_A          417 TSMGGTQ  423 (529)
T ss_dssp             -------
T ss_pred             HhcccCc
Confidence            9999887

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=1.5e-26  Score=212.62  Aligned_cols=238  Identities=26%  Similarity=0.362  Sum_probs=214.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      ...+.++.+|.+++++++..|+++|.++...++..++.+.+.|+++.|+.++.+++++++..|+++|.+++.++++.+..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45889999999999999999999998876656777888999999999999999999999999999999999888999999


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      +.+.|+++.|+.+++++++.+++.|+++|.|++.+++.+ ..+.+.|+++.|++++.++++.++..++++|++++...+.
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999988887 8888999999999999999999999999999999985533


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcceeee
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFI  282 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~  282 (513)
                      ...                                .+.+.++++.|+.+|+++++.++..|+++|++++.. ++.+..+.
T Consensus       172 ~~~--------------------------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  219 (252)
T 4db8_A          172 QIQ--------------------------------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK  219 (252)
T ss_dssp             HHH--------------------------------HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHH--------------------------------HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            222                                223456788999999999999999999999999965 44667888


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      +.|+++.|++++.+++++++..|+++|.+++.
T Consensus       220 ~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          220 EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=5e-26  Score=237.47  Aligned_cols=316  Identities=20%  Similarity=0.194  Sum_probs=257.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.|+++|+++++.++..|+++|.+++.+.+..+..+.+.|+++.|+++|+++++.++..++.+|.+++..+++.+.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  176 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  176 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence            48899999999999999999999999999997778888899999999999999998888888888899999875555544


Q ss_pred             HHHhC------------------------------------------CChHHHHHhh-----------------------
Q 010291           82 EVLAA------------------------------------------GALQPVIGLL-----------------------   96 (513)
Q Consensus        82 ~~~~~------------------------------------------g~i~~L~~ll-----------------------   96 (513)
                      .+.+.                                          |+++.|+.++                       
T Consensus       177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            44443                                          4444443333                       


Q ss_pred             ----------------cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhh
Q 010291           97 ----------------SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQ  158 (513)
Q Consensus        97 ----------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~  158 (513)
                                      .+.+++++..++++|.+++..++..+..+.+.|+++.|+.++.+.  .+.++..++++|+|++.
T Consensus       257 ~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          257 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence                            334566777788888888877777788888999999999999863  37999999999999986


Q ss_pred             ccc----cchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh---------
Q 010291          159 DMH----NQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ---------  224 (513)
Q Consensus       159 ~~~----~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~---------  224 (513)
                      ...    .+..+.+.|+++.|+++|.+++ +.++..++++|+|++.++.++..+.+.|+++.|++......         
T Consensus       337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~  416 (644)
T 2z6h_A          337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  416 (644)
T ss_dssp             SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred             CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence            533    3455778899999999999875 68999999999999998888888889999998877443211         


Q ss_pred             --------------hhHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec
Q 010291          225 --------------ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  283 (513)
Q Consensus       225 --------------~~~~~~~~~~~~~-------~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  283 (513)
                                    .....+..++..+       ..+.+.++++.|+.+|.++++.++..|+++|.+++..++.+..+.+
T Consensus       417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~  496 (644)
T 2z6h_A          417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA  496 (644)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             ccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence                          1111222222222       3456789999999999999999999999999999987777888899


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .|+++.|..++.+++++++..|+++|.+++.+..
T Consensus       497 ~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~  530 (644)
T 2z6h_A          497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  530 (644)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred             cCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999987653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=6.3e-26  Score=231.92  Aligned_cols=312  Identities=19%  Similarity=0.224  Sum_probs=265.7

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+++.|+++|+++++.++..|+.+|.+++. ++.++..+.. .|+++.|+++|.+ ++++++..|+.+|.+++.+ ++.
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~   93 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chh
Confidence            5789999999999999999999999999998 5567766665 4899999999985 4899999999999999977 568


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+.+.|+++.|+.++.+++++++..++++|.+++..++..+..+.+.|+++.|++++++++++++..++.+|.+++.+
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999999999999988778888888999999999999999999999999999999975


Q ss_pred             -cccchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhh-hhhHHHHHHHHHH
Q 010291          160 -MHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKR  236 (513)
Q Consensus       160 -~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~~  236 (513)
                       ++.+..+.+.|+++.|++++.+++ ...+..++.+|.+++.+++++..+.+.|+++.|++..... ......+..++.+
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence             566788888999999999998765 5567778899999999999999999999999887644422 1222233344444


Q ss_pred             HHHH-----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcC--CCcchhhhHHHH
Q 010291          237 LEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVA  308 (513)
Q Consensus       237 ~~~~-----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~  308 (513)
                      +...     ...++++.|+.++++++++++..|+++|++++..+ +.+..+.+.|+++.|++++.+  .++.++..++.+
T Consensus       254 l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence            4321     23478999999999999999999999999998865 477888899999999999975  347999999999


Q ss_pred             HHHhhhc
Q 010291          309 LFKLANK  315 (513)
Q Consensus       309 L~~l~~~  315 (513)
                      |.+++..
T Consensus       334 L~nl~~~  340 (529)
T 1jdh_A          334 LRHLTSR  340 (529)
T ss_dssp             HHHHTSS
T ss_pred             HHHHHcC
Confidence            9999865

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=234.94  Aligned_cols=312  Identities=19%  Similarity=0.230  Sum_probs=267.2

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+++.|+++|+++++.+|..|+.+|.+++.+ ..++..+... |+++.|++.|.++ +++++..|+.+|.+++.+ ++.
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~   90 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   90 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhh
Confidence            58999999999999999999999999999985 4566666654 8899999999864 899999999999999987 558


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh-
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-  158 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~-  158 (513)
                      +..+.+.|+++.|+.++.++++.++..|+++|.|++...+..+..+.+.|+++.|+.+++++++.++..++.+|.+++. 
T Consensus        91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999998877778888899999999999999999999999999999996 


Q ss_pred             ccccchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhh-hhhHHHHHHHHHH
Q 010291          159 DMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV-QATKDCVAKTLKR  236 (513)
Q Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~-~~~~~~~~~~~~~  236 (513)
                      +++++..+.+.|+++.|++++.+.+ ..++..++.+|++++.+++++..+.+.|+++.|+...... ......+..++.+
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            5677888999999999999998765 5678899999999999999999999999999887644322 2223333444444


Q ss_pred             HHHH-----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcC-C-CcchhhhHHHH
Q 010291          237 LEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS-T-NPKQQLDGAVA  308 (513)
Q Consensus       237 ~~~~-----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~-~-~~~v~~~a~~~  308 (513)
                      +...     ...++++.|+.+|++.+++++..|+++|++|+..+ ..+..+.+.|+++.|++++.+ + .+.++..|+.+
T Consensus       251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            4321     12468999999999999999999999999998864 567788899999999999986 3 37999999999


Q ss_pred             HHHhhhc
Q 010291          309 LFKLANK  315 (513)
Q Consensus       309 L~~l~~~  315 (513)
                      |.+++..
T Consensus       331 L~nL~~~  337 (644)
T 2z6h_A          331 LRHLTSR  337 (644)
T ss_dssp             HHHHTSS
T ss_pred             HHHHhcC
Confidence            9999864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.94  E-value=8e-26  Score=239.50  Aligned_cols=316  Identities=20%  Similarity=0.207  Sum_probs=257.5

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.|+++|+++++.++..|+++|.+++.+.+..+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+.
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~  312 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  312 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            48899999999999999999999999999997788889999999999999999998888888888888877765443333


Q ss_pred             ------------------------------------------HHHhCCChHHHHH-------------------------
Q 010291           82 ------------------------------------------EVLAAGALQPVIG-------------------------   94 (513)
Q Consensus        82 ------------------------------------------~~~~~g~i~~L~~-------------------------   94 (513)
                                                                .+++.|+++.|+.                         
T Consensus       313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence                                                      3334444444433                         


Q ss_pred             --------------hhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-C-CHHHHHHHHHHHHHHhh
Q 010291           95 --------------LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQ  158 (513)
Q Consensus        95 --------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~-~~~~~~~a~~~L~~l~~  158 (513)
                                    ++.+.+++++..|+++|.+|+..+++.+..+.+.|+++.|+.++.+ + .+.++..|+++|+||+.
T Consensus       393 ~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence                          3344566778888888888887777778888889999999999986 3 34899999999999986


Q ss_pred             cccc----chhhHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh---------
Q 010291          159 DMHN----QAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ---------  224 (513)
Q Consensus       159 ~~~~----~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~---------  224 (513)
                      ....    +..+...|+++.|++++.+++. .++..++++|+|++.++.++..+.+.|+++.|++......         
T Consensus       473 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~  552 (780)
T 2z6g_A          473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  552 (780)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence            5433    4577888999999999998875 9999999999999998888888889999998877443211         


Q ss_pred             --------------hhHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec
Q 010291          225 --------------ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  283 (513)
Q Consensus       225 --------------~~~~~~~~~~~~~-------~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  283 (513)
                                    .....+.+++.++       ..+.+.++++.|+.+|.++++.++..|+.+|.+++..++.+..+.+
T Consensus       553 al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~  632 (780)
T 2z6g_A          553 GGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA  632 (780)
T ss_dssp             -----CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             ccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                          0111222333332       3356788999999999999999999999999999987778888999


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .|+++.|.+++.++++++|..|+++|.+++.+..
T Consensus       633 ~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          633 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999998654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=5.8e-25  Score=196.02  Aligned_cols=198  Identities=26%  Similarity=0.376  Sum_probs=186.3

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|..+.|+.+|+++++.++..|+++|.+++.++++.+..+.+.|+++.|+++|.++++.++..|+++|++++.+++..++
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            46789999999999999999999999999988899999999999999999999999999999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc-c
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD-M  160 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~  160 (513)
                      .+.+.|+++.|+.++.++++.++..|+++|+|++..+++....+.+.|+++.|+++++++++.++..++++|.|++.+ +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999988888888889999999999999999999999999999999987 5


Q ss_pred             ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      +.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            567778889999999999999999999999999999985

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.93  E-value=1.5e-27  Score=198.85  Aligned_cols=129  Identities=36%  Similarity=0.558  Sum_probs=98.8

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+++.|+....|.++++++++|+.+++|+|+|.++++.+++
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~   96 (145)
T 4eoz_A           17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA   96 (145)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred             HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence            56778899999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHH
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH  465 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~  465 (513)
                      .+++.+|++|++++|++.|+++|.+.++.+||+.++.+|+.|++++|++
T Consensus        97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~  145 (145)
T 4eoz_A           97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT  145 (145)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence            9999999999999999999999999999999999999999999998864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=7.4e-25  Score=232.11  Aligned_cols=312  Identities=18%  Similarity=0.223  Sum_probs=264.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+++.|+++|.++++.+|..|+.+|.+++. +...+..+.. .|+++.|+++|.+ .+++++..|+.+|.+++.. +..
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~  226 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REG  226 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            3679999999999999999999999999998 4566666664 4899999999985 4899999999999999977 566


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+.+.|+++.|+.++.++++.++..|+++|.|++...+..+..+.+.|+++.|+.++++++..++..++.+|.+++..
T Consensus       227 ~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~  306 (780)
T 2z6g_A          227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  306 (780)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            88888999999999999999999999999999999988788888888999999999999999999999999999999964


Q ss_pred             -cccchhhHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHH
Q 010291          160 -MHNQAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKR  236 (513)
Q Consensus       160 -~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~  236 (513)
                       .+.+..+.+.|+++.|+.++.+++. ..+..++.+|.+|+..+.++..+++.|+++.|+....... .....+..++.+
T Consensus       307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~  386 (780)
T 2z6g_A          307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  386 (780)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence             5678888889999999999987764 4567889999999998889999999999998877544221 122223344444


Q ss_pred             HHHH-----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcC-CC-cchhhhHHHH
Q 010291          237 LEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS-TN-PKQQLDGAVA  308 (513)
Q Consensus       237 ~~~~-----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~-~~-~~v~~~a~~~  308 (513)
                      +...     ...++++.|+.+|++.++.++..|+++|++|+..+ +.+..+.+.|+++.|++++.+ ++ +.++..|+++
T Consensus       387 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          387 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            4321     23568999999999999999999999999998865 467788899999999999986 44 3899999999


Q ss_pred             HHHhhhc
Q 010291          309 LFKLANK  315 (513)
Q Consensus       309 L~~l~~~  315 (513)
                      |.+++..
T Consensus       467 L~nL~~~  473 (780)
T 2z6g_A          467 LRHLTSR  473 (780)
T ss_dssp             HHHTTSS
T ss_pred             HHHHHhc
Confidence            9999864

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.91  E-value=1.7e-24  Score=170.41  Aligned_cols=104  Identities=29%  Similarity=0.551  Sum_probs=94.2

Q ss_pred             cccCCCcccEEEEecC----eeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHH
Q 010291          339 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  414 (513)
Q Consensus       339 ~~~~~~~~Dv~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  414 (513)
                      ++.++.++|+++.+++    +.|++||.||+++|+||++||.++|+|+. ..|.++++++++|+.+++|+|||.++++.+
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~   80 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD   80 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence            5778999999999998    89999999999999999999999999988 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHhcC
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIAQDI  443 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~  443 (513)
                      ++.+++.+|++|+++.|++.|+++|.+++
T Consensus        81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           81 TVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            99999999999999999999999998754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=2.6e-23  Score=183.76  Aligned_cols=196  Identities=16%  Similarity=0.216  Sum_probs=172.8

Q ss_pred             CChhHHHHhhccCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      -.+|.++++|+++++  +++..|+++|.+++.++++++..+.+.|+||.|+++|+++++++++.|+++|++|+.++++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            468999999999888  899999999999998899999999999999999999999999999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC----------------CCCH
Q 010291           81 KEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDV  143 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----------------~~~~  143 (513)
                      ..+.+.|+++.|+++|. +.+.++++.++.+|+||+.. +..+..+.+ ++++.|+.++.                ..++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 57899999999999999855 555666666 46899987653                1367


Q ss_pred             HHHHHHHHHHHHHhhc-cccchhhHhc-CChHHHHHHhcC------CCHHHHHHHHHHHHhcccC
Q 010291          144 QLREMSAFALGRLAQD-MHNQAGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       144 ~~~~~a~~~L~~l~~~-~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~  200 (513)
                      +++++|..+|+||+.. ++.|+.+.+. |.++.|+.+++.      .+.+.+++++.+|.||+..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999975 4788889876 557999999874      2568899999999999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=8.9e-23  Score=181.82  Aligned_cols=199  Identities=24%  Similarity=0.334  Sum_probs=178.1

Q ss_pred             HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q 010291           42 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  121 (513)
Q Consensus        42 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  121 (513)
                      ...|..+.|+.+|.+++++++..|+++|++++..++..+..+.+.|+++.|+.+|.+++++++..|+++|+|++.+++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34678999999999999999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             hHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       122 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      +..+.+.|+++.|+.+++++++.++..|+++|.|++.+.+. +..+.+.|+++.|++++.+++..++..++++|++++.+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999975544 56778899999999999999999999999999999986


Q ss_pred             -cchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          201 -EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       201 -~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                       ++.+..+                                 .+.++++.|+.++.++++.++..|+++|.+++.
T Consensus       169 ~~~~~~~~---------------------------------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAV---------------------------------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHH---------------------------------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHH---------------------------------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence             4333333                                 345688899999999999999999999999975

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.90  E-value=6e-24  Score=170.27  Aligned_cols=103  Identities=29%  Similarity=0.441  Sum_probs=94.8

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++|+|+....|.++++++++|+.+++|+|||.++++.+++
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~   96 (120)
T 2if5_A           17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV   96 (120)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred             HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHH
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTI  439 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l  439 (513)
                      .+++.+|++|++++|++.|+++|
T Consensus        97 ~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           97 GDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHh
Confidence            99999999999999999999987

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=3.6e-22  Score=184.79  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL   96 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll   96 (513)
                      +.+..|+..|.+++. +.++...+.+.|++++|+. +|.++++.+|..|+++|++++.+++..++.+++.|+++.|+.+|
T Consensus        55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            578899999999998 6788999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             cC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-ccchhhHhcCChHH
Q 010291           97 SS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVP  174 (513)
Q Consensus        97 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~  174 (513)
                      .+ .+..+++.|+|+|+|++.+++.....+.+.|+++.|+.+|+++++.++..|+|+|.+++.+. +.+..+++.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            86 47899999999999999888888888889999999999999999999999999999999764 45778889999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          175 LLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       175 L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      |+.+|.+++..+++.++.+|++++...
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999863

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.89  E-value=1.8e-23  Score=169.18  Aligned_cols=105  Identities=23%  Similarity=0.421  Sum_probs=100.1

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCccccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~~  415 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+++.| ....|.+ +++++++|+.+++|+|||.+.++.++
T Consensus        21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~   99 (127)
T 1r29_A           21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGN   99 (127)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH
Confidence            457788999999999999999999999999999999999999998 7789999 99999999999999999999999999


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l~~~  442 (513)
                      +.+++.+|++|+++.|++.|+++|.++
T Consensus       100 ~~~ll~~A~~~~i~~L~~~c~~~l~~~  126 (127)
T 1r29_A          100 IMAVMATAMYLQMEHVVDTCRKFIKAS  126 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999763

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.88  E-value=1.2e-23  Score=172.67  Aligned_cols=110  Identities=25%  Similarity=0.379  Sum_probs=102.6

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  415 (513)
                      ..++.++.++||++.++|+.|++||.||+++|+||++||.+++.|+  ..|.++ ++++++|+.+|+|+|||.+.++.++
T Consensus        28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~  105 (138)
T 2z8h_A           28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN  105 (138)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence            4567889999999999999999999999999999999999988764  578995 8999999999999999999999999


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhH
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENV  448 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~  448 (513)
                      +.+++.+|++|+++.|++.|+++|.+.++.+|+
T Consensus       106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna  138 (138)
T 2z8h_A          106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS  138 (138)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence            999999999999999999999999999987763

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=6.4e-22  Score=174.93  Aligned_cols=196  Identities=16%  Similarity=0.174  Sum_probs=171.6

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           46 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      .++.++++|.++++  .++..|+++|.+++..++..+..+.+.|+++.|+.+|.++++++++.|+|+|.||+.++++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999998887  8999999999999988899999999999999999999999999999999999999988889999


Q ss_pred             HHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc----------------CCCHHH
Q 010291          124 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL  186 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~  186 (513)
                      .+.+.|+++.|+++|+ +++.++++.++.+|+||+..+.++..+.+ +++++|++++.                ..+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 57999999999999999998888888876 46888887652                125689


Q ss_pred             HHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh------hcc
Q 010291          187 QHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKG  259 (513)
Q Consensus       187 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~------~~~  259 (513)
                      +.+|..+|.||+. +++++..+.+.                                .|.++.|+.+++..      +..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~--------------------------------~Gli~~Lv~~l~~~~~~~~~~~k  215 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRC--------------------------------DGLIDSLVHYVRGTIADYQPDDK  215 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTS--------------------------------TTHHHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHC--------------------------------CCcHHHHHHHHHhhhhcccchhH
Confidence            9999999999987 55777777653                                34678888888873      556


Q ss_pred             hhhhHHHHHhhccCC
Q 010291          260 VQRRVALALAHLCSP  274 (513)
Q Consensus       260 v~~~a~~aL~~l~~~  274 (513)
                      .+++++.+|.||+..
T Consensus       216 ~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          216 ATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            789999999999853

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.88  E-value=2.1e-23  Score=171.94  Aligned_cols=104  Identities=24%  Similarity=0.407  Sum_probs=94.0

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCccccCHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  414 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  414 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+++.+  +....|.++++++++|+.+|+|+|||.++++.+
T Consensus        39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~  118 (144)
T 2ppi_A           39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED  118 (144)
T ss_dssp             HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred             HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence            457889999999999999999999999999999999999998875  677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHH
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIA  440 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~  440 (513)
                      ++.+++.+|++|++++|++.|+++|+
T Consensus       119 ~v~~ll~~A~~l~i~~L~~~C~~~L~  144 (144)
T 2ppi_A          119 TIQDVVQAADLLLLTDLKTLCCEFLE  144 (144)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence            99999999999999999999998863

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.88  E-value=1.9e-23  Score=166.59  Aligned_cols=102  Identities=25%  Similarity=0.378  Sum_probs=94.1

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+++    ...|.++++++++|+.+++|+|||.++++.+++
T Consensus        16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v   91 (119)
T 3b84_A           16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR   91 (119)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence            3567889999999999999999999999999999999999876    568999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~  442 (513)
                      .+++.+|++|++++|++.|+++|.+.
T Consensus        92 ~~ll~~A~~~~i~~L~~~C~~~l~~~  117 (119)
T 3b84_A           92 DQVLLAARELRVPEAVELCQSFKPKT  117 (119)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence            99999999999999999999998763

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.88  E-value=3e-23  Score=169.25  Aligned_cols=106  Identities=25%  Similarity=0.347  Sum_probs=92.7

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++||++.++|+.|++||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v   92 (135)
T 2yy9_A           17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR   92 (135)
T ss_dssp             HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Confidence            4578899999999999999999999999999999999999876    568999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhcCChh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQDISLE  446 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~  446 (513)
                      .+++.+|++|+++.|++.|+++|.+.+...
T Consensus        93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~  122 (135)
T 2yy9_A           93 DQVLLAAKELRVPEAVELCQSFQPQTSVGQ  122 (135)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999998876543

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.88  E-value=1.2e-22  Score=162.54  Aligned_cols=101  Identities=25%  Similarity=0.409  Sum_probs=95.0

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++     ...|.++++++++|+.+++|+|||.++++.+++
T Consensus        20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~   94 (121)
T 1buo_A           20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL   94 (121)
T ss_dssp             HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred             HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHH
Confidence            456788999999999999999999999999999999999864     458999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~~  442 (513)
                      .+++.+|++|++++|++.|+++|.+.
T Consensus        95 ~~ll~~A~~~~i~~L~~~c~~~l~~~  120 (121)
T 1buo_A           95 DDLLYAAEILEIEYLEEQCLKMLETI  120 (121)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999864

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=161.67  Aligned_cols=100  Identities=22%  Similarity=0.400  Sum_probs=93.1

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecC--CCCHHHHHHHHHHHhcCccccCHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTLD  414 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~~~~~  414 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++    ....|.++  ++++++|+.+++|+|||.++++.+
T Consensus        14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~   89 (116)
T 2vpk_A           14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW   89 (116)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence            356778999999999999999999999999999999999876    35677777  999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHH
Q 010291          415 IAQDLLRAADQYLLEGLKRLCEYTIA  440 (513)
Q Consensus       415 ~~~~ll~~A~~~~~~~l~~~c~~~l~  440 (513)
                      ++.+++.+|++|++++|++.|+++|.
T Consensus        90 ~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           90 NVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            99999999999999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=1.1e-20  Score=174.86  Aligned_cols=159  Identities=19%  Similarity=0.213  Sum_probs=151.5

Q ss_pred             CCChhHHHH-hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|++++|+. +|+++++.+|..|+++|++++.+++..+..+++.|++++|+++|++ ++..++..|+++|++++.+++..
T Consensus        80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~  159 (296)
T 1xqr_A           80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG  159 (296)
T ss_dssp             TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH
Confidence            489999999 9999999999999999999999899999999999999999999995 58899999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      .+.+.+.|+++.|+.+|.+++..++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.+++.++++|.|++.+
T Consensus       160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            88899999999999999999999999999999999988888999999999999999999999999999999999999987


Q ss_pred             c
Q 010291          160 M  160 (513)
Q Consensus       160 ~  160 (513)
                      .
T Consensus       240 ~  240 (296)
T 1xqr_A          240 F  240 (296)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.86  E-value=2.9e-22  Score=159.76  Aligned_cols=99  Identities=22%  Similarity=0.365  Sum_probs=92.6

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+     ....|.++++++++|+.+++|+|||.+.++.+++
T Consensus        19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~   93 (119)
T 2q81_A           19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV   93 (119)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence            45677899999999999999999999999999999999986     3457899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHH
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIA  440 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~  440 (513)
                      .+++.+|++|++++|++.|+++|.
T Consensus        94 ~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           94 DDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999999999999984

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.6e-21  Score=197.53  Aligned_cols=284  Identities=15%  Similarity=0.115  Sum_probs=227.2

Q ss_pred             CChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCch--------------------------------------hHHHHHh
Q 010291            3 GGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDE--------------------------------------NKNQIVE   43 (513)
Q Consensus         3 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~i~~   43 (513)
                      |+++.|+++++. ++..+...++.+|.|++...+.                                      ++..+.+
T Consensus       376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e  455 (778)
T 3opb_A          376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR  455 (778)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence            467889999985 7788999999999999873221                                      4556778


Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChH---HHHHHHHHHHHhhcCCch
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAATDSD  120 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~  120 (513)
                      .|+++.|+.+++++++.++..|+++|.+++.+ +.+|..+++.|+++.|+.++.+....   .+..|+.+|.++.....+
T Consensus       456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          456 TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            89999999999999999999999999999976 88899999999999999999887544   899999999999844332


Q ss_pred             hhHHHH---hcCChHHHHHHhCC-CCH-------------HHHHHHHHHHHHHhhccc-----cchhhHhc-CChHHHHH
Q 010291          121 CKVHIV---QRGAVRPLIEMLQS-PDV-------------QLREMSAFALGRLAQDMH-----NQAGIAHN-GGLVPLLK  177 (513)
Q Consensus       121 ~~~~~~---~~~~i~~L~~~l~~-~~~-------------~~~~~a~~~L~~l~~~~~-----~~~~~~~~-~~i~~L~~  177 (513)
                      .. .+-   ..|++++|+.+|.. +..             --+..|+.+|.||+..++     .|..++.. |+++.|..
T Consensus       535 ~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~  613 (778)
T 3opb_A          535 GL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN  613 (778)
T ss_dssp             HH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence            21 111   13889999999983 211             126799999999998763     36777874 99999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhcccCcchH-HHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 010291          178 LLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA  256 (513)
Q Consensus       178 ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~  256 (513)
                      ++.+++..+++.|+++++||+.+++.. ..+...+. +                          ...+-++.|+.++++.
T Consensus       614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~-~--------------------------~~~~rL~lLV~Ll~s~  666 (778)
T 3opb_A          614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN-P--------------------------QSLRNFNILVKLLQLS  666 (778)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS-H--------------------------HHHHHHHHHHHGGGCS
T ss_pred             HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC-c--------------------------hhhccHHHHHHHHcCC
Confidence            999999999999999999999877653 22321110 0                          0123488999999999


Q ss_pred             hcchhhhHHHHHhhccC-CCCcceeeecC-CchHHHHhhhcC--CCcchhhhHHHHHHHhhhc
Q 010291          257 EKGVQRRVALALAHLCS-PDDQRTIFIDG-GGLELLLGLLGS--TNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       257 ~~~v~~~a~~aL~~l~~-~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~  315 (513)
                      +.++|.+|+++|++++. .+.....+++. ++++.+++++.+  ++++++..++.+++|++..
T Consensus       667 D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          667 DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999964 45555556665 899999999998  8999999999999999974

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.85  E-value=6e-23  Score=165.63  Aligned_cols=101  Identities=24%  Similarity=0.407  Sum_probs=94.8

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCC-CCHHHHHHHHHHHhcCccccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Y~~~~~~~~~~  415 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.+++.|  ...|.+++ +++++|+.+++|+|||.++++.++
T Consensus        24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~  101 (125)
T 3ohu_A           24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN  101 (125)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred             HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence            456788999999999999999999999999999999999998876  67899998 999999999999999999999999


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHH
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTI  439 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l  439 (513)
                      +.+++.+|++|+++.|++.|+++|
T Consensus       102 v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A          102 IREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHhC
Confidence            999999999999999999998753

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.7e-22  Score=163.72  Aligned_cols=102  Identities=24%  Similarity=0.378  Sum_probs=89.0

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  415 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++    ....|.++ ++++++|+.+++|+|||.+.++.++
T Consensus        25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~  100 (129)
T 3ga1_A           25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD  100 (129)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred             HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence            456778999999999999999999999999999999999876    56789997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTIAQD  442 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l~~~  442 (513)
                      +.+++.+|++|++++|++.|+++|.+.
T Consensus       101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A          101 QDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             HHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999874

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.85  E-value=7.8e-23  Score=164.34  Aligned_cols=102  Identities=25%  Similarity=0.423  Sum_probs=92.2

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  415 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++++|+  ..|.++ ++++++|+.+++|+|||.++++.++
T Consensus        21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~   98 (124)
T 2ihc_A           21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN   98 (124)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred             HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence            4567788999999999999999999999999999999999988764  578894 8999999999999999999999999


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHH
Q 010291          416 AQDLLRAADQYLLEGLKRLCEYTIA  440 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~~c~~~l~  440 (513)
                      +.+++.+|++|+++.|++.|+++|.
T Consensus        99 v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           99 VDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            9999999999999999999998864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-19  Score=183.39  Aligned_cols=277  Identities=16%  Similarity=0.153  Sum_probs=222.0

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh----
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN----   78 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~----   78 (513)
                      .+.+++.|.+++.+.+..|++.|..++. .++.++.+++. |.++.|+.++++ .+..+...++.+|.|++...+.    
T Consensus       336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e  414 (778)
T 3opb_A          336 SEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX  414 (778)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence            3556777777776779999999999998 78888888875 559999999994 7888999999999999974331    


Q ss_pred             ----------------------------------HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           79 ----------------------------------IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        79 ----------------------------------~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                                                        ++..+.+.|+++.|+.++.++++.++..++++|.|++ .+++.+..
T Consensus       415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~  493 (778)
T 3opb_A          415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQ  493 (778)
T ss_dssp             CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHH
T ss_pred             hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHH
Confidence                                              3566778899999999999999999999999999998 55889999


Q ss_pred             HHhcCChHHHHHHhCCCCHH---HHHHHHHHHHHHhhccccchhhHh---cCChHHHHHHhcC-CC-H------------
Q 010291          125 IVQRGAVRPLIEMLQSPDVQ---LREMSAFALGRLAQDMHNQAGIAH---NGGLVPLLKLLDS-KN-G------------  184 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~---~~~i~~L~~ll~~-~~-~------------  184 (513)
                      +++.|+++.|+.++.+....   .+..|+.+|.++....+....+..   .|++++|+.+|.. +. .            
T Consensus       494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~  573 (778)
T 3opb_A          494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL  573 (778)
T ss_dssp             HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred             HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence            99999999999999987544   899999999999965443322211   3889999999983 11 1            


Q ss_pred             HHHHHHHHHHHhcccCcch-----HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 010291          185 SLQHNAAFALYGLADNEDN-----VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG  259 (513)
Q Consensus       185 ~~~~~a~~~L~~l~~~~~~-----~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~  259 (513)
                      .-+..|+.+|.||+..+++     +..+++                                +.++++.|..+|.+.+..
T Consensus       574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~--------------------------------~~ga~~~L~~LL~s~n~~  621 (778)
T 3opb_A          574 TDNYEALLALTNLASSETSDGEEVCKHIVS--------------------------------TKVYWSTIENLMLDENVP  621 (778)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--------------------------------SHHHHHHHHHGGGCSSHH
T ss_pred             HHHHHHHHHHHHHhcCCcccchHHHHHHHH--------------------------------hcCHHHHHHHHHhCCCHH
Confidence            1267899999999987633     333332                                136789999999999999


Q ss_pred             hhhhHHHHHhhccCCCCcc-eeeecCC------chHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          260 VQRRVALALAHLCSPDDQR-TIFIDGG------GLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       260 v~~~a~~aL~~l~~~~~~~-~~l~~~~------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +|.+|+++++||+.+++.. ..+.+.+      .++.|+.++.+++.++|..|+++|.+++..
T Consensus       622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999887754 2333222      378999999999999999999999999643

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.83  E-value=3.6e-21  Score=152.46  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=86.7

Q ss_pred             cccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHH
Q 010291          339 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD  418 (513)
Q Consensus       339 ~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~  418 (513)
                      .+.++.++||++.++|+.|++||.||+++|+||++         ....|.++++++++|+.+++|+|||++.++.+++.+
T Consensus        24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~   94 (119)
T 3m5b_A           24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP   94 (119)
T ss_dssp             HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred             HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence            35678999999999999999999999999999984         346799999999999999999999999999999999


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHh
Q 010291          419 LLRAADQYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       419 ll~~A~~~~~~~l~~~c~~~l~~  441 (513)
                      ++.+|++|+++.|++.|++++.+
T Consensus        95 ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           95 LQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhh
Confidence            99999999999999999998765

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.82  E-value=2.4e-20  Score=147.48  Aligned_cols=92  Identities=27%  Similarity=0.471  Sum_probs=86.1

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcc-ccCHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLDI  415 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-~~~~~~  415 (513)
                      ..++.++.++|+++.++|+.|++||.||+++|+||++||.++     ...|.++++++++|+.+++|+|||.+ .++.++
T Consensus        23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~   97 (116)
T 3fkc_A           23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDL   97 (116)
T ss_dssp             HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred             HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence            456778999999999999999999999999999999999875     56899999999999999999999999 799999


Q ss_pred             HHHHHHHHHHhcHHHHHH
Q 010291          416 AQDLLRAADQYLLEGLKR  433 (513)
Q Consensus       416 ~~~ll~~A~~~~~~~l~~  433 (513)
                      +.+++.+|++|++++|++
T Consensus        98 ~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           98 LDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHHHHHHhCccccCc
Confidence            999999999999999874

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=2.7e-14  Score=132.79  Aligned_cols=226  Identities=15%  Similarity=0.079  Sum_probs=166.4

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.++.|++.|+++++.+|..|+++|+++..           .+.++.|+.+|.++++.+|..|+++|+.+........ .
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-~   90 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-N   90 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-H
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-H
Confidence            578999999999999999999999999873           2368899999999999999999999999874322211 1


Q ss_pred             HHhCCChHHHH-HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           83 VLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        83 ~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                           .++.|. .+++++++.++..++++|+++...++...     ...++.|+..++++++.++..++++|+++..   
T Consensus        91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A           91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND---  157 (280)
T ss_dssp             -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence                 233343 24577899999999999999975443222     2357889999999999999999999998753   


Q ss_pred             cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291          162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                             .+.++.|..++.++++.++..++++|+.+.....                                       
T Consensus       158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------------------------------------  191 (280)
T 1oyz_A          158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------------------------------------  191 (280)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------------------------------------
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------------------------------------
Confidence                   2478899999999999999999999998853221                                       


Q ss_pred             hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                        .+++.|+.+++++++.+|..|+++|+++.          ....++.|...+.++  +++..++.+|..+.
T Consensus       192 --~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          192 --DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELG  249 (280)
T ss_dssp             --HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHC
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcC
Confidence              23455556666666666666666666654          224566666666542  36666666666553

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.55  E-value=1.9e-13  Score=135.15  Aligned_cols=289  Identities=11%  Similarity=0.138  Sum_probs=213.4

Q ss_pred             CCChhHHHHhhcc--CCHHHHHHHHHHHHHhhccCch-----------------hHHHH-HhcCCHHHHHHhhcCCCHHH
Q 010291            2 EGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDE-----------------NKNQI-VECNALPTLILMLRSEDSAI   61 (513)
Q Consensus         2 ~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i-~~~g~i~~Lv~lL~~~~~~v   61 (513)
                      +++++.|+..|+.  .|.++...++.+|.++...+++                 +.+.+ .+.+.++.|+.+|++.+-.+
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v  138 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV  138 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence            3578999999976  4788888999999887654332                 11223 34578999999999999999


Q ss_pred             HHHHHHHHHHhhcCChh-HHHHHHhC-CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC
Q 010291           62 HYEAVGVIGNLVHSSPN-IKKEVLAA-GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  139 (513)
Q Consensus        62 ~~~a~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~  139 (513)
                      |..++.+|..++..++. .++.+... ++++.|+.+|.+....+|..++..|.+++.++++.+..+.-.|+++.|++++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999998887 77777755 99999999999999999999999999999999998888888899999999998


Q ss_pred             CCC----HHHHHHHHHHHHHHhhccc-cchhhHhcCChHHHHHHhcCCCH------HHHHH---HHHHHHhcccCcchHH
Q 010291          140 SPD----VQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNG------SLQHN---AAFALYGLADNEDNVA  205 (513)
Q Consensus       140 ~~~----~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~------~~~~~---a~~~L~~l~~~~~~~~  205 (513)
                      ...    ..+...|+.+|.||.+++. +|..+.+.|+++.|..++..+++      ....+   ++.++.-|+..... .
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~-~  297 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP-P  297 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC-H
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC-C
Confidence            743    4788999999999997765 78889999999999999975432      12222   44444444432110 0


Q ss_pred             HHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh--hcchhhhHHHHHhhccCCCC-cceeee
Q 010291          206 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDD-QRTIFI  282 (513)
Q Consensus       206 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~~~-~~~~l~  282 (513)
                                               ..+..+-..+.+.|+++.|+.++..+  ...++..|+.+++.++++.. ++..+.
T Consensus       298 -------------------------~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa  352 (651)
T 3grl_A          298 -------------------------GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFA  352 (651)
T ss_dssp             -------------------------HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------------CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHh
Confidence                                     00111233445677888899988874  45788889999999887644 333332


Q ss_pred             cCC---------chHHHHhhhcC-CCcchhhhHHHHHHHhhhcc
Q 010291          283 DGG---------GLELLLGLLGS-TNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       283 ~~~---------~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  316 (513)
                      +..         .+..|+.++.+ ...++|.+|+.++.....+.
T Consensus       353 ~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N  396 (651)
T 3grl_A          353 SVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN  396 (651)
T ss_dssp             HCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             hccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence            221         23334444554 45677888888887777554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.52  E-value=6.7e-13  Score=117.67  Aligned_cols=188  Identities=28%  Similarity=0.312  Sum_probs=157.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.++.|+++|+++++.+|..|+..|+.+..           .+.++.|+++|.++++.+|..|+++|+.+..        
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            457899999999999999999999998764           2568999999999999999999999999852        


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                         .+.++.|+.++.++++.++..++++|..+..           .+.++.|+.+++++++.++..++.+|.++..    
T Consensus        80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence               2467889999999999999999999999852           2467889999999999999999999999842    


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                            ...++.|..++.++++.++..++.+|+.+..                                           
T Consensus       142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------------------------  172 (211)
T 3ltm_A          142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------  172 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------
Confidence                  2467789999999999999999999998743                                           


Q ss_pred             hhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC
Q 010291          243 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  276 (513)
Q Consensus       243 ~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (513)
                      ...++.|..+++++++.+|..|..+|.++.....
T Consensus       173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            2256778889999999999999999999976543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.51  E-value=4.6e-13  Score=132.49  Aligned_cols=293  Identities=15%  Similarity=0.129  Sum_probs=214.5

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCch-hHHHHHhc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVEC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +.++.|+.+|++++..+|..++..|..++.+++. .++.+... ++++.|+.+|.++...+|..++..|.+++.++++.+
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ  201 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ  201 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence            4588999999999999999999999999988777 88888854 999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhcCCCh----HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH------HHHHH--
Q 010291           81 KEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------QLREM--  148 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~------~~~~~--  148 (513)
                      +.+.-.|+++.|+.++..+..    .+...|+.+|.||.+.++.++..+.+.|+++.|..+++.+++      ....+  
T Consensus       202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~  281 (651)
T 3grl_A          202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH  281 (651)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence            999999999999999987543    788999999999999999999999999999999999975432      23333  


Q ss_pred             -HHHHHHHHhhcc-------ccchhhHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhccc-CcchHHHHHhhcCccccc
Q 010291          149 -SAFALGRLAQDM-------HNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQ  217 (513)
Q Consensus       149 -a~~~L~~l~~~~-------~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~  217 (513)
                       +..++.-++...       .+|..+.+.|++..|++++..+  ...++..|+.+++.+.+ ++.++..+.+..+ +...
T Consensus       282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v-p~~~  360 (651)
T 3grl_A          282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA-PSNP  360 (651)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE-SSSS
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC-CCCC
Confidence             566666666432       3477888999999999998876  47889999999999987 5555666554321 1100


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC-cceeeecC----------C
Q 010291          218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDG----------G  285 (513)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~----------~  285 (513)
                                             ....++..|+.++.+ ...++|.+|+.++..+..+.+ .+..+...          +
T Consensus       361 -----------------------~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~  417 (651)
T 3grl_A          361 -----------------------PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGN  417 (651)
T ss_dssp             -----------------------CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTS
T ss_pred             -----------------------CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCC
Confidence                                   011123333444433 345677888888777765432 11111110          1


Q ss_pred             ch---HHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291          286 GL---ELLLGLLGSTNPKQQLDGAVALFKLANKATTL  319 (513)
Q Consensus       286 ~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  319 (513)
                      .+   ..|..-+.+.++-----|+.++.++..+....
T Consensus       418 ~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          418 TVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             SSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence            11   12344444555544445777788887765433

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.51  E-value=7.4e-13  Score=116.40  Aligned_cols=183  Identities=28%  Similarity=0.318  Sum_probs=157.4

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ..+.++++|+++++.+|..|+..|+.+..           .+.++.|+++|.++++.+|..|+++|+.+..  +      
T Consensus        15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~------   75 (201)
T 3ltj_A           15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E------   75 (201)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------
T ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H------
Confidence            46789999999999999999999998764           2468999999999999999999999998852  1      


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                         ..++.|+.++.++++.++..|+++|.++..  +         ..++.|+.++.++++.++..++++|..+..     
T Consensus        76 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           76 ---RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence               368889999999999999999999999842  1         367889999999999999999999999852     


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  243 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (513)
                           ...++.|..++.++++.++..++.+|+.+..                                           .
T Consensus       137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------------------------------------~  168 (201)
T 3ltj_A          137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------------------------------E  168 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------H
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------h
Confidence                 3567889999999999999999999998742                                           2


Q ss_pred             hhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291          244 RVLNHLLYLMRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~  272 (513)
                      ..++.|..+++++++.+|..|..+|..+-
T Consensus       169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          169 RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            25777888999999999999999998874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.49  E-value=4.1e-13  Score=144.82  Aligned_cols=305  Identities=15%  Similarity=0.074  Sum_probs=211.4

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-   84 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-   84 (513)
                      +.+++.|.++++.+|..++.+++.++.....    -...+.++.+++.+.++++.++..++.+|+.++.+.+.....-. 
T Consensus        93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~----~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~  168 (852)
T 4fdd_A           93 SECLNNIGDSSPLIRATVGILITTIASKGEL----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVL  168 (852)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT----TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhh
Confidence            4567778888899999999999999874311    12346788999999999999999999999999965443211100 


Q ss_pred             ---hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           85 ---AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        85 ---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                         -...++.+++++.+.++++|..|+++|.++....+..... .-.++++.+...+.++++.++..++++|..++....
T Consensus       169 ~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~  247 (852)
T 4fdd_A          169 DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM  247 (852)
T ss_dssp             SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH
Confidence               1235677777888889999999999999987654432111 113567888889999999999999999999997544


Q ss_pred             cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhh---cCcccccchh------------h-----
Q 010291          162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---GGVQKLQDGE------------F-----  221 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---g~i~~L~~~~------------~-----  221 (513)
                      ..-.-.-.+.++.++..+.+.++.++..|+..+..++....... ....   ..++.+....            .     
T Consensus       248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~  326 (852)
T 4fdd_A          248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS  326 (852)
T ss_dssp             HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence            32111112466778888898999999999999999987543222 1111   1222222111            0     


Q ss_pred             ------hhhhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHH
Q 010291          222 ------IVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  291 (513)
Q Consensus       222 ------~~~~~~~~~~~~~~~~~~~~~~~----~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~  291 (513)
                            .....+.+...++..+.......    +++.+...+.++++.+|..|++++++++........-.-.+.++.++
T Consensus       327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~  406 (852)
T 4fdd_A          327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI  406 (852)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence                  00112344555555555444434    45555566666889999999999999997654221112246789999


Q ss_pred             hhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          292 GLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       292 ~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ..+.++++.+|..+++++.+++...
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.49  E-value=5.4e-13  Score=118.27  Aligned_cols=189  Identities=23%  Similarity=0.248  Sum_probs=158.7

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      .+.++.|+.+|+++++.+|..|+..|+.+..           .++++.|+.++.++++.++..++++|+.+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            4578999999999999999999999998853           2468899999999999999999999999852       


Q ss_pred             HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                          .+.++.|+..++++++.++..++++|..+..          ...++.|.+++.++++.++..++.+|+++...   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---  142 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---  142 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence                2467899999999999999999999999853          24678899999999999999999999987531   


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  283 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  283 (513)
                                                              ..++.|..+++++++.+|..|+.+|+.+..          
T Consensus       143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------  172 (211)
T 3ltm_A          143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------  172 (211)
T ss_dssp             ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred             ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence                                                    246778888988999999999999998842          


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ...++.|..++.++++.+|..|..+|.++.....
T Consensus       173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            4578899999999999999999999999876644

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.48  E-value=3.6e-12  Score=118.32  Aligned_cols=222  Identities=16%  Similarity=0.147  Sum_probs=170.7

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++.|+++|+++++.+|..|+++|+.+... +....     ..++.+. .++.++++.+|..++++|+++....+.... 
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-  127 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-  127 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-
Confidence            578899999999999999999999998752 22111     1233343 245678999999999999999754332222 


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                          ..++.|+..+.++++.++..++++|+++..           .+.++.|+.+++++++.++..++++|..+....  
T Consensus       128 ----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--  190 (280)
T 1oyz_A          128 ----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--  190 (280)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--
T ss_pred             ----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--
Confidence                257889999999999999999999998852           247999999999999999999999999984221  


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                            ...++.|..++.++++.++..++.+|+++..                                           
T Consensus       191 ------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------------------------------------------  221 (280)
T 1oyz_A          191 ------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------------------------------------------  221 (280)
T ss_dssp             ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------------------------------------------
T ss_pred             ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------------------------------------------
Confidence                  2356789999999999999999999998762                                           


Q ss_pred             hhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHHHHH
Q 010291          243 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF  310 (513)
Q Consensus       243 ~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~  310 (513)
                      ...++.|+..++++  +++..++.+|+.+..          ...++.|.+++.+ +++++...+..+|.
T Consensus       222 ~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          222 KRVLSVLCDELKKN--TVYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            12567777888664  499999999998853          2578999999975 66777777666553

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=1.8e-12  Score=113.84  Aligned_cols=186  Identities=24%  Similarity=0.255  Sum_probs=158.3

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      .+..+.++++|+++++.+|..|+.+|+.+..           .+.++.|+.++.++++.++..++++|..+..  +    
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----   75 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence            3567899999999999999999999998753           1468899999999999999999999999842  2    


Q ss_pred             HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                           +.++.|+..+.++++.++..++++|.++..          ...++.|..++.++++.++..++++|+.+..    
T Consensus        76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence                 468899999999999999999999999743          2467789999999999999999999998753    


Q ss_pred             HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec
Q 010291          204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  283 (513)
Q Consensus       204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  283 (513)
                                                             ...++.|..++.++++.+|..|+.+|+.+.          .
T Consensus       137 ---------------------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~  167 (201)
T 3ltj_A          137 ---------------------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------G  167 (201)
T ss_dssp             ---------------------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------S
T ss_pred             ---------------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c
Confidence                                                   125677888999999999999999999883          2


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      ...++.|..++.++++.+|..|..+|.++..
T Consensus       168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          168 ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            3478999999999999999999999988653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.39  E-value=3.5e-12  Score=131.68  Aligned_cols=298  Identities=14%  Similarity=0.087  Sum_probs=205.6

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ++.+.++++++++.+|..|+.+|+.++.....   .......++.+..++.++++.+|..|+.+|+.++...+..   ..
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~  239 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DL  239 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HH
Confidence            45566677888999999999999999864222   1223457888888999899999999999999998643321   12


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc-
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-  163 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-  163 (513)
                      ....++.+..++.+.++.+|..++.+|+.++.....   ......+++.++.+++++++.++..++++|..++...... 
T Consensus       240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            234788888889888999999999999999853221   1233467899999999999999999999999998654322 


Q ss_pred             -hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh-hhhhHHHHHHHHHHHHHH-
Q 010291          164 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEK-  240 (513)
Q Consensus       164 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~~-  240 (513)
                       ........++.+..++.++++.++..++++|..++..-...  ......++.+...... ....+..+..++..+... 
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence             11223456677888999999999999999999987522111  1111222222221111 111111111222222211 


Q ss_pred             ----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          241 ----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       241 ----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                          ....+++.+..++.+.++.+|..++.+++.++..-...  ......++.+..++.++++.+|..|+.++..++..
T Consensus       395 ~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  471 (588)
T 1b3u_A          395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence                23457888888888888999999999999987421111  12234678899999999999999999999998865

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.39  E-value=4.8e-12  Score=126.43  Aligned_cols=278  Identities=13%  Similarity=0.031  Sum_probs=187.3

Q ss_pred             CChhHHHHhhccC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh
Q 010291            3 GGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         3 g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~   77 (513)
                      +.++.|++.++++  ++.++..|+.+|+.++... ++...... ..+++.++.+|.++  ++.+|..|+.+++++.....
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888  8999999999999998743 22111111 23677888888877  79999999999999764322


Q ss_pred             hHHH-HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           78 NIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        78 ~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      .... .....-.++.+...+.+.+++++..++.+|..++...+..-...+..++++.++..+++.++.++..++..+..+
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            1110 001111356666677788899999999999999865543221112226677788888888999999999999999


Q ss_pred             hhcccc------------------chhhHh---cCChHHHHHHhcCC-------CHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          157 AQDMHN------------------QAGIAH---NGGLVPLLKLLDSK-------NGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       157 ~~~~~~------------------~~~~~~---~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      +.....                  ...+.+   ...++.+++.+...       +..++..|+.+|..++..-..  .  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~--  362 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D--  362 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T--
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H--
Confidence            864310                  011111   22344455555432       235666666777666542110  0  


Q ss_pred             hhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCch
Q 010291          209 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGL  287 (513)
Q Consensus       209 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i  287 (513)
                                                      .-..+++.+...+.++++.+|..|+.+++.++.+.. ....-.-...+
T Consensus       363 --------------------------------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~  410 (462)
T 1ibr_B          363 --------------------------------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM  410 (462)
T ss_dssp             --------------------------------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHH
T ss_pred             --------------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                                            012356667777778899999999999999997543 11111115688


Q ss_pred             HHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          288 ELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       288 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      +.++..+.++++.+|..|+++|.+++....
T Consensus       411 ~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          411 PTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999997643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.37  E-value=7.7e-12  Score=128.59  Aligned_cols=260  Identities=13%  Similarity=0.095  Sum_probs=194.6

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .+.+.+++++++++..+|..+..++..++..+++...     -++..+.+-|.++++.+|..|+++|+++.  .++..+.
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~  121 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY  121 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH
Confidence            4567788888899999998888888888775444322     24667888888999999999999999986  3443333


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                           .++.+..++.+.++.+|..|+.++.++...+++..   .+.++++.+..++.++++.++..|+.+|..++...+.
T Consensus       122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred             -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence                 35778999999999999999999999997766532   2346789999999999999999999999999976543


Q ss_pred             c-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291          163 Q-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  241 (513)
Q Consensus       163 ~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  241 (513)
                      . ..-...+.+..|++.+.+.++..+...+.++..++..++..                                     
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-------------------------------------  236 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-------------------------------------  236 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-------------------------------------
T ss_pred             ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-------------------------------------
Confidence            3 11112234666777777888888888999998888543210                                     


Q ss_pred             hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC----CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ...+++.+..++++.++.|+..|++++.++...    ++.... .-....+.|+.++. +++++|..|+.+|..+....
T Consensus       237 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~  313 (591)
T 2vgl_B          237 AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR  313 (591)
T ss_dssp             HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence            123566777788888999999999999999752    121111 11234566776654 78999999999999998753

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.36  E-value=2e-12  Score=97.51  Aligned_cols=79  Identities=23%  Similarity=0.403  Sum_probs=64.9

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHh-----c---Cccc---cCH
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL  413 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~---~~~~---~~~  413 (513)
                      +.+.. +|+.|.+||.+ ++.|+||++||.+  ++.|+....|+++++++.+++.+++|+|     +   +.++   ++.
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~   82 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   82 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence            44444 68999999999 9999999999987  6788888999999999999999999999     5   6676   889


Q ss_pred             HHHHHHHHHHHHhc
Q 010291          414 DIAQDLLRAADQYL  427 (513)
Q Consensus       414 ~~~~~ll~~A~~~~  427 (513)
                      +++.+|+.+|++|+
T Consensus        83 ~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           83 EIALELLMAANFLD   96 (97)
T ss_dssp             GGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhC
Confidence            99999999999997

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.35  E-value=5.4e-12  Score=130.21  Aligned_cols=298  Identities=13%  Similarity=0.080  Sum_probs=204.0

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .++.++++++++++.+|..|+.+|..++..-.. .+.......+++.+..+++++++.+|..++++|+.++.....   .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---h
Confidence            356777888888889999999999888864322 121122345678888899999999999999999999743111   1


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      ......++.+..++.+.+++++..++.+|..+.......   .....+++.+..++++++..++..++.++..++..-..
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  435 (588)
T 1b3u_A          359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV  435 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH
Confidence            122347888999999999999999999998887432221   12235788888999999999999999999999853222


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh-hhhhHHHHHHHHHHHHHH-
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEK-  240 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~~-  240 (513)
                      .  ......++.+..++.+++..++..|+.+++.++..-..  .......++.|...... ..........++..+... 
T Consensus       436 ~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~  511 (588)
T 1b3u_A          436 E--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC  511 (588)
T ss_dssp             G--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc
Confidence            1  12223566788889999999999999999999763221  11122334443321111 111222222333332221 


Q ss_pred             ----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          241 ----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       241 ----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                          +...+++.|+..++++++++|..++++++.++..-...  ......+|.|.+++.+.++++|..|+.++..+.
T Consensus       512 ~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence                23467888888888889999999999999997532211  122346678888888899999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.35  E-value=4e-12  Score=137.08  Aligned_cols=275  Identities=15%  Similarity=0.094  Sum_probs=195.7

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .++.+++.++++++.+|..|+++|..+....+...... -.+.++.+..++.++++++|..|+++|..++...+..-...
T Consensus       175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~  253 (852)
T 4fdd_A          175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH  253 (852)
T ss_dssp             HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            45677788888999999999999998886433211111 12467888888889999999999999999997655432111


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH--HhcCChHHHHHHh-----------CC----------
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI--VQRGAVRPLIEML-----------QS----------  140 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L~~~l-----------~~----------  140 (513)
                      + .+.++.++..+.+.+++++..|+.++..++... ..+..+  .-...++.++..+           .+          
T Consensus       254 l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~  331 (852)
T 4fdd_A          254 M-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT  331 (852)
T ss_dssp             H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred             H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence            1 146778888888889999999999999998542 222211  1123456666666           22          


Q ss_pred             -CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccch
Q 010291          141 -PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG  219 (513)
Q Consensus       141 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~  219 (513)
                       .+-.++..+..+|..++.....  .+. ...++.+.+++.++++.++..|+.++++++.....  .+ .          
T Consensus       332 ~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~-~----------  395 (852)
T 4fdd_A          332 ISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GM-I----------  395 (852)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HH-G----------
T ss_pred             cccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HH-H----------
Confidence             1123688899999999864432  222 24566778888889999999999999999975432  11 0          


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCC
Q 010291          220 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTN  298 (513)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~  298 (513)
                                          -.-..+++.++..++++++.||..+++++++++..-. ......-.+.++.|++.+.+++
T Consensus       396 --------------------~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~  455 (852)
T 4fdd_A          396 --------------------PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN  455 (852)
T ss_dssp             --------------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred             --------------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence                                0124578899999999999999999999999986311 1111112356788888898889


Q ss_pred             cchhhhHHHHHHHhhhccc
Q 010291          299 PKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       299 ~~v~~~a~~~L~~l~~~~~  317 (513)
                      +.+|..|+++|.+++....
T Consensus       456 ~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          456 KRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987644

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.33  E-value=4.1e-12  Score=130.63  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=136.4

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ++..+.+.|+++++.+|..|+++|+++.  .++....     .++.+.++|.++++.+|+.|+.++.++...+++..   
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---  156 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---  156 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---
Confidence            3556777788999999999999999986  3443333     36778999999999999999999999998666532   


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      .+.+.++.+..+|.+.++.++..|+.+|..++..+++....-...+.+..|++.+.+.++..+...+.++..++..++..
T Consensus       157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~  236 (591)
T 2vgl_B          157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE  236 (591)
T ss_dssp             HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH
T ss_pred             ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH
Confidence            22457899999999999999999999999999776543111111234667777777788888888888887776332211


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                          ....++.+..++++.++.++..|++++..+..
T Consensus       237 ----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          237 ----AQSICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             ----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence                12345667777888888999999999998864

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.23  E-value=2.3e-11  Score=98.61  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=83.1

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------  408 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------  408 (513)
                      +.+.. +|+.|.+|+.+ +..|++|++||.+.   + ...|++++++..+++.+++|+|...                  
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   78 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL---G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD   78 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT---C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc---C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence            56665 78999999998 88999999999752   1 4589999999999999999999865                  


Q ss_pred             --------cccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHH
Q 010291          409 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS  450 (513)
Q Consensus       409 --------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~  450 (513)
                              +.++.+++.+|+.||+||++.+|...|.+++...+...+.-.
T Consensus        79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee  128 (141)
T 1fs1_B           79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE  128 (141)
T ss_dssp             --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence                    567788999999999999999999999999988775444433

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.18  E-value=5.3e-10  Score=115.32  Aligned_cols=285  Identities=13%  Similarity=0.038  Sum_probs=187.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      +....++++.+++...+..+.-.+..++..+++....     ++..+.+-|.++++.+|..|+++|+++..  ++..   
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~---  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC---  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH---
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH---
Confidence            4566778888888888888888888888755443222     36678888889999999999999999973  3322   


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                        ...++.+..++.+.++.+|+.|+.++.++...+|+...     ++++.+..++.++++.++..|+.+|..++..++..
T Consensus       141 --~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          141 --RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             --HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence              23578889999999999999999999999977765432     67888889999999999999999999998654331


Q ss_pred             hhhHhcCChHHHHHHhcC---------------CCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh----hh
Q 010291          164 AGIAHNGGLVPLLKLLDS---------------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI----VQ  224 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~----~~  224 (513)
                      ... -...++.++++|.+               .++..+..++.+|+.++.......    ....+.|......    ..
T Consensus       214 ~~~-~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~----~~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          214 LAH-FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS----EAMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHH-HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHHHTSCCSST
T ss_pred             HHH-HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHhccccccc
Confidence            111 12566777766652               478888899999999987432211    0111111110000    00


Q ss_pred             hhHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCc
Q 010291          225 ATKDCVAKTLKRLEEKIH-----GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP  299 (513)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-----~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~  299 (513)
                      ........+.+.+..+..     ..++..|..++.++++.+|..|+.+|..++...+.  .+  ....+.++.++.+++.
T Consensus       289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~--~~~~~~i~~~l~d~d~  364 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AV--QRHRSTIVDCLKDLDV  364 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HH--GGGHHHHHHGGGSSCH
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HH--HHHHHHHHHHccCCCh
Confidence            011111122222211111     13566777777778888888888888877643211  11  1234566666666677


Q ss_pred             chhhhHHHHHHHhhh
Q 010291          300 KQQLDGAVALFKLAN  314 (513)
Q Consensus       300 ~v~~~a~~~L~~l~~  314 (513)
                      .+|..|..+|..++.
T Consensus       365 ~Ir~~alelL~~l~~  379 (618)
T 1w63_A          365 SIKRRAMELSFALVN  379 (618)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHcc
Confidence            777777777777664

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.14  E-value=6.7e-12  Score=104.15  Aligned_cols=108  Identities=15%  Similarity=0.286  Sum_probs=63.1

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------  408 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------  408 (513)
                      +.+.. +|+.|.+|+.+ +..|++|+.||.+..   ....|+|++++..+++.+++|+|+..                  
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   81 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD   81 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence            44554 78999999998 889999999997642   34589999999999999999999876                  


Q ss_pred             ---------cccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhcC
Q 010291          409 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH  459 (513)
Q Consensus       409 ---------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~n~~~~~~~a~~~~  459 (513)
                               +.++.+++.+|+.||+||++.+|...|.+++...+   +++++..++.+...+.
T Consensus        82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t  144 (160)
T 2p1m_A           82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT  144 (160)
T ss_dssp             -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence                     34667889999999999999999999999999988   7777777776665554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.14  E-value=1.8e-09  Score=111.29  Aligned_cols=282  Identities=16%  Similarity=0.145  Sum_probs=189.4

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +..+.+-|+++++.+|..|+++|+++..  ++..     ..+++.+.++|.++++.+|+.|+.++.++...+++..    
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----  177 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----  177 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----
Confidence            4566777889999999999999999984  3322     2357888999999999999999999999998766542    


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC---------------CCHHHHHHH
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS---------------PDVQLREMS  149 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---------------~~~~~~~~a  149 (513)
                       .+.++.+..++.+.++.++..|+.+|..++..+++....+  ...++.++.+|.+               +++..+...
T Consensus       178 -~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~i  254 (618)
T 1w63_A          178 -EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRI  254 (618)
T ss_dssp             -GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHH
Confidence             2578888899999999999999999999986655432222  2578888877653               488899999


Q ss_pred             HHHHHHHhhccccchhhHhcCChHHHHHHhc------CCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh-h
Q 010291          150 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLD------SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-I  222 (513)
Q Consensus       150 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~  222 (513)
                      +.+|..++..++..    .....+.|..++.      +.+..+...++.++..+...+....     .++..|..... .
T Consensus       255 l~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~  325 (618)
T 1w63_A          255 LRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNN  325 (618)
T ss_dssp             HHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCS
T ss_pred             HHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCC
Confidence            99999998654321    1233444555543      2235677788888888765332111     11112211111 1


Q ss_pred             hhhhHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCc
Q 010291          223 VQATKDCVAKTLKRLEEKIH---GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP  299 (513)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~---~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~  299 (513)
                      ....+..+..++..+.....   ......++.++.+++..+|..|+.+|..++...+..      ..++.|...+.+.++
T Consensus       326 d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~------~iv~eL~~~l~~~d~  399 (618)
T 1w63_A          326 DKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR------GMMKELLYFLDSCEP  399 (618)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH------HHHHHHHHHHHHCCH
T ss_pred             CCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH------HHHHHHHHHHHhCCH
Confidence            11222222223333222111   123456777777788889999999998888654422      135777777777888


Q ss_pred             chhhhHHHHHHHhhhc
Q 010291          300 KQQLDGAVALFKLANK  315 (513)
Q Consensus       300 ~v~~~a~~~L~~l~~~  315 (513)
                      +++..+..++..++..
T Consensus       400 e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          400 EFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888888875

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.12  E-value=4e-10  Score=117.43  Aligned_cols=193  Identities=15%  Similarity=0.166  Sum_probs=151.2

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcC-ChhHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHS-SPNIKK   81 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~   81 (513)
                      .+.++++.|+++++..|..|+.+|.+++. ++..+..+...|++..++ .+|.+++.+||..|+++|+||+.+ ..+.+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            46678899999999999999999999997 788999999999988765 578889999999999999999975 367788


Q ss_pred             HHHhCCChHHHHHhhcCCC---------------------hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC
Q 010291           82 EVLAAGALQPVIGLLSSCC---------------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS  140 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~  140 (513)
                      .+...|+++.|..+++...                     .++...++.+|++|+..+......+...+.++.|+..+.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            9999999999999885311                     1344567889999998888878888888999999988853


Q ss_pred             ---CCHHHHHHHHHHHHHHhhcccc-chhhHhcCChH---HHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291          141 ---PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLV---PLLKLLDSKNGSLQHNAAFALYGLA  198 (513)
Q Consensus       141 ---~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~---~L~~ll~~~~~~~~~~a~~~L~~l~  198 (513)
                         ...+++..++.+|.+++.++.. ...+.+.+...   .+..+..+.+ ..+..+++.|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence               2568999999999999987654 34444444432   2333333333 34566788888863

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.08  E-value=1.2e-09  Score=118.15  Aligned_cols=277  Identities=13%  Similarity=0.024  Sum_probs=184.7

Q ss_pred             CChhHHHHhhccC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh
Q 010291            3 GGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         3 g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~   77 (513)
                      ..++.+++.+.++  ++.++..++.+|..++..- ++... -.-..+++.+...+.++  +..+|..|+.+|..++..-.
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHH-hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3567888888888  8999999999999998642 12111 11123566777788765  68999999999999875422


Q ss_pred             hHH-HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           78 NIK-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        78 ~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      ..- ........++.+...+.+.+.+++..++.+|..+....+......+...+++.++..+.+.++.++..++..+.++
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            210 0011112566777777788899999999999999866554433333446788888888888999999999999998


Q ss_pred             hhcccc----------------c--hhhH---hcCChHHHHHHhcC-------CCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          157 AQDMHN----------------Q--AGIA---HNGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       157 ~~~~~~----------------~--~~~~---~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      +.....                +  ....   -...++.+++.+..       .+..++..+..++..++..-..     
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-----  361 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-----  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-----
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-----
Confidence            854210                0  0000   01223445555532       2344555566666555431110     


Q ss_pred             hhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-c-ceeeecCCc
Q 010291          209 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-Q-RTIFIDGGG  286 (513)
Q Consensus       209 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~-~~~l~~~~~  286 (513)
                                                     ..-..+++.+...+.++++.+|..|+++++.++.... . ... .-...
T Consensus       362 -------------------------------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~  409 (876)
T 1qgr_A          362 -------------------------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQA  409 (876)
T ss_dssp             -------------------------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHH
T ss_pred             -------------------------------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHH
Confidence                                           0012355666667777889999999999999987533 1 111 11346


Q ss_pred             hHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          287 LELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       287 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ++.++..+.++++.+|..|++++.+++....
T Consensus       410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          410 MPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            8889999999999999999999999997643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.05  E-value=2.9e-09  Score=119.37  Aligned_cols=272  Identities=15%  Similarity=0.101  Sum_probs=192.3

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ++.+++-+.++++++|..|...|.+...........-....+++.+++.|.++++.+|..|+.+|+.++...+..  .+ 
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~-   84 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV-   84 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH-
Confidence            567788888999999999999998876532111000111245778889999999999999999999998654331  11 


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-----hHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~  158 (513)
                       ..+++.++..+.++++.+|..++.+|..++..-...     ...-....+++.|+..+. ++++.++..++.++..++.
T Consensus        85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence             235778888888888999999999999988543322     011123457889999998 5889999999999999985


Q ss_pred             ccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHH
Q 010291          159 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  238 (513)
Q Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  238 (513)
                      .....-.-.....++.++..+.+++..++..|+.++..++......  +                               
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-------------------------------  210 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-------------------------------  210 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------------------------------------
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-------------------------------
Confidence            3322111111345666778888888999999999999998643210  0                               


Q ss_pred             HHhhhhhHHHHHHHHHHhh-cchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          239 EKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       239 ~~~~~~~l~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                         -..+++.++..|.+.+ ..++..++.+++.++........-.-...++.+.+.+.+.++++|..+..++..++...
T Consensus       211 ---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          211 ---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             ---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence               1235677777777643 57888999999998753221111112467899999999999999999999999888753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.04  E-value=2e-09  Score=116.32  Aligned_cols=307  Identities=12%  Similarity=0.049  Sum_probs=186.5

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~   82 (513)
                      ++.+.+.++++++.+|..|+.+++.++.+.. +...... ..+++.+++.+.++++.+|..++++|+.++....... ..
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            3455566678889999999999999997532 2222222 2468889999999999999999999999985421100 00


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc----hhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRL  156 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l  156 (513)
                      -.-..+++.++..+.++ +.++..++++|.+++....    ...... -..+++.|+..+++.  ++.++..++.++..+
T Consensus       450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l  527 (861)
T 2bpt_A          450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDGLIGAANRIDNEFNARASAFSALTTM  527 (861)
T ss_dssp             TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence            00113567778888765 8999999999999985421    111111 134577888888854  378999999999999


Q ss_pred             hhccccchhhHhcCChHHHHHHhcCC---------------CHHHHHHHHHHHHhcccCcch-HHHHHhhcCcccccchh
Q 010291          157 AQDMHNQAGIAHNGGLVPLLKLLDSK---------------NGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGE  220 (513)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~L~~ll~~~---------------~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~  220 (513)
                      +........-.-...++.+++.+...               ...++..++.+|.+++..-.. ..... ...++.+....
T Consensus       528 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l  606 (861)
T 2bpt_A          528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLL  606 (861)
T ss_dssp             HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHH
T ss_pred             HHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHH
Confidence            86544321111123445555555421               245677888888888752211 00000 01111111111


Q ss_pred             hhh-h-hhHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHH
Q 010291          221 FIV-Q-ATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  291 (513)
Q Consensus       221 ~~~-~-~~~~~~~~~~~~~~~~-------~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~  291 (513)
                      ... . ........++..+...       +-..+++.++..+.+.++.++..++.+++.++..-.....-.-...++.+.
T Consensus       607 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~  686 (861)
T 2bpt_A          607 EKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLA  686 (861)
T ss_dssp             HSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHH
Confidence            100 1 2222222223222221       123477888888877888899999999998875322111111124566777


Q ss_pred             hhhcCCC--cchhhhHHHHHHHhhhc
Q 010291          292 GLLGSTN--PKQQLDGAVALFKLANK  315 (513)
Q Consensus       292 ~ll~~~~--~~v~~~a~~~L~~l~~~  315 (513)
                      +.+.+.+  ++++..+..++..++..
T Consensus       687 ~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          687 QMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             HHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHhCCccccHhhhHHHHHHHHHHHHH
Confidence            7777654  88999999999998875

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.04  E-value=2.5e-08  Score=102.51  Aligned_cols=295  Identities=13%  Similarity=0.077  Sum_probs=196.1

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      +.+...+++++.+++...+..+.-++..++..+++....     ++..+.+=|.++|+.+|..|+++|+++..  ++..+
T Consensus        73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH
Confidence            456778889999999999999999999999866554322     25567777789999999999999999963  44322


Q ss_pred             HHHhCCChHHHHHhh--cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           82 EVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                           ..++.+.+++  .+.++.+|+.|+.++.++...+|+...   ..++++.+.++|.++++.++..|+.++..++..
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence                 3578889999  889999999999999999976665322   247999999999999999999999999999864


Q ss_pred             cccchhhHhcCChHHHHHHhcCC-------------CHHHHHHHHHHHHhcccCc--chHHHHHhhcCcccccchh----
Q 010291          160 MHNQAGIAHNGGLVPLLKLLDSK-------------NGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGE----  220 (513)
Q Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~----  220 (513)
                      .+..-.-.-...+..|.+++..+             ++..+...+..+..++..+  +....+.+  .+..++...    
T Consensus       218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~  295 (621)
T 2vgl_A          218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP  295 (621)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence            43210000011222333444322             5788888999999888632  22222211  111111100    


Q ss_pred             ----hhhhh-hHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHH
Q 010291          221 ----FIVQA-TKDCVAKTLKRLEEKI-----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL  290 (513)
Q Consensus       221 ----~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L  290 (513)
                          ..... .....-.+.+.+..+.     -..++..|..+|.++++++|..++.+|..++...+....+  ......+
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i  373 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETV  373 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHH
Confidence                00000 0112222222222221     1235677778887788999999999999998653211122  2345677


Q ss_pred             Hhhhc-CCCcchhhhHHHHHHHhhhc
Q 010291          291 LGLLG-STNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       291 ~~ll~-~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +..+. +++..++..+...|..++..
T Consensus       374 ~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          374 INALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            77777 88888999999988888754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.03  E-value=2.4e-09  Score=115.71  Aligned_cols=303  Identities=15%  Similarity=0.138  Sum_probs=190.7

Q ss_pred             hhHHHHhhcc-------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 010291            5 IPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         5 i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      +|.++..|..       +++.++..|..+|..++....   ..+. ..+++.+.+.+.+++..+|..|+.+++.++....
T Consensus       326 l~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~  401 (861)
T 2bpt_A          326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD  401 (861)
T ss_dssp             HHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence            4566666653       235789999999999986322   1111 1245666677778889999999999999997642


Q ss_pred             -hHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           78 -NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        78 -~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                       ..-...+ ..+++.++..+.++++.++..++++++.++....... ..-.-..+++.++..++++ +.++..++++|.+
T Consensus       402 ~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~  479 (861)
T 2bpt_A          402 KVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIIN  479 (861)
T ss_dssp             HHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence             2111122 2468888999999999999999999999984422110 0001124577888888776 8999999999999


Q ss_pred             Hhhcccc--chhh--HhcCChHHHHHHhcCCC--HHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhh------
Q 010291          156 LAQDMHN--QAGI--AHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFI------  222 (513)
Q Consensus       156 l~~~~~~--~~~~--~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~------  222 (513)
                      ++.....  ...+  .-...++.|++.+.+.+  +.++..++.+++.++.... ....... ..++.+++....      
T Consensus       480 l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~  558 (861)
T 2bpt_A          480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCG
T ss_pred             HHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhc
Confidence            9865321  1111  11244667788887544  7889999999999876322 2211111 122222221110      


Q ss_pred             ----------hhhhHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHhhc-chhhhHHHHHhhccCCCC--cceeee
Q 010291          223 ----------VQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDD--QRTIFI  282 (513)
Q Consensus       223 ----------~~~~~~~~~~~~~~~~~~~-------~~~~l~~Lv~lL~~~~~-~v~~~a~~aL~~l~~~~~--~~~~l~  282 (513)
                                .......+..++..+....       -..+++.++..+++.+. .++..++.+++.++....  ....+ 
T Consensus       559 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-  637 (861)
T 2bpt_A          559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-  637 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence                      0001111222232222211       23466777778877766 899999999999875322  11111 


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                       ...++.|...+.++++.++..+..++..++...
T Consensus       638 -~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          638 -ETFSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             -HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence             236788888888888899999999998887653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.99  E-value=3.2e-09  Score=110.60  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=126.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHH-HHhhcCCChHHHHHHHHHHHHhhcC-Cchhh
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV-IGLLSSCCSESQREAALLLGQFAAT-DSDCK  122 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~  122 (513)
                      +.+.++++.|+++++..|..|+++|++|+.+ +..++.+...|++..+ ..+|.+++.+++..|+++|+||+.. .++..
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3466678889999999999999999999975 7888888888888765 5578889999999999999999954 45667


Q ss_pred             HHHHhcCChHHHHHHhCCC--------------C-------HHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhc
Q 010291          123 VHIVQRGAVRPLIEMLQSP--------------D-------VQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLD  180 (513)
Q Consensus       123 ~~~~~~~~i~~L~~~l~~~--------------~-------~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~  180 (513)
                      ..+...|++++|..++++.              .       ..+..+++.+|++||..... ...+...++++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            7888999999999888521              1       13456788999999966544 456677888998888875


Q ss_pred             CC---CHHHHHHHHHHHHhcccCcch
Q 010291          181 SK---NGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       181 ~~---~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      +.   ..+++..|+.+|..++.+...
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~  218 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLK  218 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHH
Confidence            43   367999999999999985543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.98  E-value=1e-08  Score=110.88  Aligned_cols=274  Identities=14%  Similarity=0.111  Sum_probs=187.3

Q ss_pred             hhHHHHhhccC--CHHHHHHHHHHHHHhhccCchhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            5 IPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         5 i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ++.+.+.++++  ++.+|..|+.++..++..-.... .......+++.+.+.+.+.+.++|..++.+|..++...+..-.
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45566777766  68999999999999875322211 1111112566777777788899999999999999876554322


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch------------------hhHHH--HhcCChHHHHHHhCC-
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD------------------CKVHI--VQRGAVRPLIEMLQS-  140 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~i~~L~~~l~~-  140 (513)
                      ..+....++.+...+.+.+++++..++..+.+++.....                  .....  .-...++.++..+.. 
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~  333 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence            333336778888888888899999999998888743100                  00000  012356677777753 


Q ss_pred             ------CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcc
Q 010291          141 ------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ  214 (513)
Q Consensus       141 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~  214 (513)
                            ++..++..+..+|..++.....  .+. ...++.+...+.++++.++..++.+++.++...... .+       
T Consensus       334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~-------  402 (876)
T 1qgr_A          334 DENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QL-------  402 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HH-------
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HH-------
Confidence                  3456889999999999864431  222 244556677788889999999999999998743210 00       


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc----ceeeecCCchHHH
Q 010291          215 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----RTIFIDGGGLELL  290 (513)
Q Consensus       215 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~----~~~l~~~~~i~~L  290 (513)
                                             .. .-..+++.++..+.++++.+|..|++++++++..-..    ...+  ...++.|
T Consensus       403 -----------------------~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l  456 (876)
T 1qgr_A          403 -----------------------KP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCL  456 (876)
T ss_dssp             -----------------------HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHH
T ss_pred             -----------------------HH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHH
Confidence                                   00 1234788899999999999999999999999864221    1111  2456778


Q ss_pred             HhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          291 LGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       291 ~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      +..+.++ +.++..+++++.+++...
T Consensus       457 ~~~l~~~-~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          457 IEGLSAE-PRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            8888774 889999999999998764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.95  E-value=5.6e-08  Score=82.64  Aligned_cols=187  Identities=19%  Similarity=0.152  Sum_probs=151.1

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      .+..|.++|...|+.++.+|+.+|..+...-+.......-...++.++.++++.|..+...|+++|..+..+.+-..+.+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            35678899999999999999999999998644444444444579999999999999999999999999998766554444


Q ss_pred             HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291           84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  163 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  163 (513)
                      ..  ...++..++.++++-++.+++..++.+-..++.       .+++..+.+++.+.|++++..+..++.+++....+.
T Consensus       114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            33  567888899999999999999999999422222       135778899999999999999999999999766554


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  201 (513)
                      ..+  .+.+..+-.++.+.|+.+++.|+.++-.+...+
T Consensus       185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            433  256667889999999999999999999988754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.90  E-value=2.1e-09  Score=107.24  Aligned_cols=283  Identities=10%  Similarity=0.017  Sum_probs=183.3

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCC-hhHHHHH
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSS-PNIKKEV   83 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~   83 (513)
                      .+++.|.++++.+ ..++.+++.++......   -...+.++.+++.+.++  ++.++..++.+|+.++.+. +......
T Consensus        94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~  169 (462)
T 1ibr_B           94 YVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK  169 (462)
T ss_dssp             HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG
T ss_pred             HHHHHhCCCCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH
Confidence            4666777777777 78888888888632110   01346788999999988  8999999999999998643 2110111


Q ss_pred             HhCCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhH-HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           84 LAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        84 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      . ..+++.++..+.+.  ++.++..|++++.++...-..... .....-+++.+...+.+++++++..++++|..++...
T Consensus       170 ~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~  248 (462)
T 1ibr_B          170 S-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  248 (462)
T ss_dssp             H-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            1 13677788888887  789999999999997633221110 0111114666777778889999999999999998654


Q ss_pred             ccch-hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcC---c---ccccchhhhhhhhHHHHHHH
Q 010291          161 HNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG---V---QKLQDGEFIVQATKDCVAKT  233 (513)
Q Consensus       161 ~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~---i---~~L~~~~~~~~~~~~~~~~~  233 (513)
                      ...- .....+.++.++..+.+.++.++..++..+..++..............   -   .....          ..   
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---  315 (462)
T 1ibr_B          249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF----------YA---  315 (462)
T ss_dssp             GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC----------HH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH----------HH---
Confidence            4321 111115566677778888999999999999988864321111111000   0   00000          00   


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHH-------hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHH
Q 010291          234 LKRLEEKIHGRVLNHLLYLMRV-------AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA  306 (513)
Q Consensus       234 ~~~~~~~~~~~~l~~Lv~lL~~-------~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  306 (513)
                           ...-..+++.++..+..       .++.+|..|+.+|..++..-.. ..+  ...++.+...+.++++.+|..|+
T Consensus       316 -----~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~--~~~~~~l~~~l~~~~~~~r~aal  387 (462)
T 1ibr_B          316 -----KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV--PHVLPFIKEHIKNPDWRYRDAAV  387 (462)
T ss_dssp             -----HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH--HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             -----HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH--HHHHHHHHHHhcCCChHHHHHHH
Confidence                 00113356666666643       3457899999999998753221 111  24567777888889999999999


Q ss_pred             HHHHHhhhc
Q 010291          307 VALFKLANK  315 (513)
Q Consensus       307 ~~L~~l~~~  315 (513)
                      .++..++..
T Consensus       388 ~~l~~l~~~  396 (462)
T 1ibr_B          388 MAFGCILEG  396 (462)
T ss_dssp             HHHHHTSSS
T ss_pred             HHHHHHhcC
Confidence            999999864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.78  E-value=5.4e-08  Score=87.78  Aligned_cols=185  Identities=12%  Similarity=0.084  Sum_probs=138.8

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +.+.+.+++.++..|..|+..|..+..+.+.....- -..+++.|...+. +.+..++..|+.+|+.++..-...-.. .
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            457888899999999999999999987633321110 1234777888884 899999999999999999532111011 1


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc-cc
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQ  163 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~  163 (513)
                      -...++.++..+.+.+..++..+..+|.+++...+-       ..+++.+...+++.++.++..++..|..+..... ..
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            123788999999999999999999999999854321       1357788999999999999999999999764432 21


Q ss_pred             -hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          164 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       164 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                       ..-.-...++.|..++.+.++.++..|..+++.++.
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             111113567789999999999999999999999885

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.78  E-value=1.9e-08  Score=75.63  Aligned_cols=79  Identities=19%  Similarity=0.376  Sum_probs=67.5

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc--------------cccC
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT  412 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~--------------~~~~  412 (513)
                      +.+.. +|..|.+++.+ +..|++++.|+.+++ |.....|+|++++..+++.+++|+|.-.              .+++
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd   83 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence            55555 78999999997 889999999998766 5556789999999999999999999643              2467


Q ss_pred             HHHHHHHHHHHHHhcH
Q 010291          413 LDIAQDLLRAADQYLL  428 (513)
Q Consensus       413 ~~~~~~ll~~A~~~~~  428 (513)
                      .+.+.+|+.||+||++
T Consensus        84 ~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999974

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.77  E-value=1.5e-07  Score=80.04  Aligned_cols=216  Identities=15%  Similarity=0.101  Sum_probs=160.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      +.+..+..+|.+.|+.++..++.+|..+...-+.......-...++.++.++.+.+..+.-.|..+|..+..+-|-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            46788999999999999999999999998764443333333457999999999999999999999999999776654444


Q ss_pred             HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH
Q 010291          125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV  204 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  204 (513)
                      +..  .+..+.++++++++-++..++..++.+---...+      +.+..+..++.+.+..++..++.++.+++...+..
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            443  5778999999999999999999999982211122      34557889999999999999999999998744220


Q ss_pred             HHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecC
Q 010291          205 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG  284 (513)
Q Consensus       205 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~  284 (513)
                            +.                             -.+++..+-.+|++.|+.++..|+.++-.+...+-.      .
T Consensus       185 ------~i-----------------------------~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~  223 (265)
T 3b2a_A          185 ------GH-----------------------------LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------E  223 (265)
T ss_dssp             ------CC-----------------------------GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------S
T ss_pred             ------HH-----------------------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------H
Confidence                  10                             123455566889999999999999999999775432      2


Q ss_pred             CchHHHHhhh--------cCCCcchhhhHHHHH
Q 010291          285 GGLELLLGLL--------GSTNPKQQLDGAVAL  309 (513)
Q Consensus       285 ~~i~~L~~ll--------~~~~~~v~~~a~~~L  309 (513)
                      +.++.+..++        -.+.|.++.+|-...
T Consensus       224 ~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          224 NVKIELLKISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence            3333333332        236777777765543

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=7.9e-09  Score=79.14  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             HhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHHH
Q 010291          440 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH  496 (513)
Q Consensus       440 ~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~  496 (513)
                      .+.++++||+.++.+|+.|++++|.+.|.+||.+||.++.++++|.+||.+.+.++.
T Consensus         5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL   61 (105)
T 2eqx_A            5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDII   61 (105)
T ss_dssp             CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999765544443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.71  E-value=1.9e-07  Score=95.95  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=85.7

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +..+..-|+++++.++-.|+++|+++..  ++..+     .+++.+.++|  .+.++.||+.|+.++.++...+++... 
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-  184 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-  184 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence            3455666788999999999999999964  44333     3477888999  889999999999999999976665321 


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD  120 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  120 (513)
                        ..+.++.+..+|.+.++.++..|+.++..++..++.
T Consensus       185 --~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          185 --MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             --CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             --chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence              247899999999999999999999999999866554

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.71  E-value=1.6e-08  Score=75.50  Aligned_cols=80  Identities=21%  Similarity=0.356  Sum_probs=62.7

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccCH
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL  413 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~  413 (513)
                      +.+.. +|..|.+++.+ +..|++++.|+.+  .+.|+....|+|++++..+++.+++|+|.-.           .+++.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~   81 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   81 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence            44454 78999999997 8899999999975  3467667799999999999999999999643           24677


Q ss_pred             HHHHHHHHHHHHhcH
Q 010291          414 DIAQDLLRAADQYLL  428 (513)
Q Consensus       414 ~~~~~ll~~A~~~~~  428 (513)
                      +.+.+|+.||+||++
T Consensus        82 ~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           82 EIALELLMAANFLDC   96 (96)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            899999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.70  E-value=2.3e-07  Score=87.00  Aligned_cols=272  Identities=9%  Similarity=0.028  Sum_probs=127.8

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ...++.++++++...+.-.--.+..++...++.   +   =++..+.+=+.++++.+|-.|+++|+++...  +.-+.  
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~--  139 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA--  139 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH--
Confidence            345677888888888888888888877642221   1   2456777777888888888888888888643  22222  


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-c
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-Q  163 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~  163 (513)
                         ..+.+.+.+.+.++.++..|+.+...+....|+..     .++++.+-+++.+.++-++.+|..+|..+...+.. -
T Consensus       140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~  211 (355)
T 3tjz_B          140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAV  211 (355)
T ss_dssp             ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHH
Confidence               45667888888888888888888888876666532     26788888888888888888888888888764321 1


Q ss_pred             hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc--chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHH--
Q 010291          164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--  239 (513)
Q Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~--  239 (513)
                      ..++     +.+.+. .-.++..+...+..+..++..+  .....+.+  .+....+.     ......-++.+.+-.  
T Consensus       212 ~kLv-----~~l~~~-~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~--~l~~~L~~-----~~~aVvyEa~k~I~~l~  278 (355)
T 3tjz_B          212 SKMI-----SKFTRH-GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFD--FIESCLRN-----KHEMVVYEAASAIVNLP  278 (355)
T ss_dssp             HHHH-----HHHHSS-CCSCHHHHHHHHHHHTCC-------------------CCCCC-----SSHHHHHHHHHHHTC--
T ss_pred             HHHH-----HHHhcC-CCcChHHHHHHHHHHHHhccccchhhHHHHHH--HHHHHHcC-----CChHHHHHHHHHHHhcc
Confidence            1111     111110 0112222233333333333221  11111110  00000000     000000000000000  


Q ss_pred             ----HhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHH
Q 010291          240 ----KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  311 (513)
Q Consensus       240 ----~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  311 (513)
                          ..-..++..|..+|.++++.+|..|++.|..+....+..  +  ...-..+.+++.+++..+...|...|.+
T Consensus       279 ~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v--~~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          279 GCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--V--TACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             ---------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--H--HHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence                001123455667788889999999999988887643321  1  1244567788888888887777666554

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.69  E-value=6.7e-07  Score=83.82  Aligned_cols=266  Identities=13%  Similarity=0.086  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC
Q 010291           19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS   98 (513)
Q Consensus        19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~   98 (513)
                      .+..-.+.|.-+..|.+-.+..+..  +...++.++.+++..+++-.--.+.+++...++.   +   =++..+.+=+.+
T Consensus        44 c~~~l~kll~l~~~G~~f~~~e~t~--lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~  115 (355)
T 3tjz_B           44 CAHILTKILYLINQGEHLGTTEATE--AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTG  115 (355)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHHH--HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCCchhHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCC
Confidence            3444455555555555543333321  2456788999999999999999999988764442   1   257778888889


Q ss_pred             CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHH
Q 010291           99 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL  178 (513)
Q Consensus        99 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l  178 (513)
                      +++-++-.|+++|+++..  ++-.+     ...+.+-+.+.+.++.++..|+.+...|....+.   ++ .+.+..+.++
T Consensus       116 ~N~~iR~lALRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~l  184 (355)
T 3tjz_B          116 KEDSYRGPAVRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEA  184 (355)
T ss_dssp             SCHHHHHHHHHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHH
T ss_pred             CcHhHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHH
Confidence            999999999999999963  33222     2466799999999999999999999999865544   22 2688899999


Q ss_pred             hcCCCHHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHH-------HHhhhhhHHHHH
Q 010291          179 LDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE-------EKIHGRVLNHLL  250 (513)
Q Consensus       179 l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~Lv  250 (513)
                      +.+.++.++.+|+.++..++.++. ....++.     .+.+.... .....|.  -++.+.       .-.....++.+.
T Consensus       185 l~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~-----~l~~~~l~-~~~~q~~--llr~l~~~~~~d~~~~~~~~~~~l~  256 (355)
T 3tjz_B          185 ASSDNIMVQYHALGLLYHVRKNDRLAVSKMIS-----KFTRHGLK-SPFAYCM--MIRVASRQLEDEDGSRDSPLFDFIE  256 (355)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-----HHHSSCCS-CHHHHHH--HHHHHTCC-----------------
T ss_pred             hcCCCccHHHHHHHHHHHHHhhchHHHHHHHH-----HHhcCCCc-ChHHHHH--HHHHHHHhccccchhhHHHHHHHHH
Confidence            999999999999999999987543 2222221     11000000 0000000  011000       111234666777


Q ss_pred             HHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          251 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       251 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .+|++.++.|...|++++..+...+..  .+  ..++..|..++.++++++|..|...|..+...
T Consensus       257 ~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~  317 (355)
T 3tjz_B          257 SCLRNKHEMVVYEAASAIVNLPGCSAK--EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK  317 (355)
T ss_dssp             CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred             HHHcCCChHHHHHHHHHHHhccCCCHH--HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            778888899999999999998552221  11  34577888889999999999998888777764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.66  E-value=8.8e-06  Score=66.31  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=138.6

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .+..++++|.++-+.+|.+|+..+..++..-++....+     +..|+-+++ ++.-..-....++++.++.-+|+..+.
T Consensus        33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~  107 (253)
T 2db0_A           33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS  107 (253)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHh
Confidence            35678888988889999999999999998777765554     456677766 566667677889999999887775333


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                           .+|.+..=..-.++.++-+...+|..++..+|....     ++...+..++.++|..-+..|+..+..+..   +
T Consensus       108 -----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe---n  174 (253)
T 2db0_A          108 -----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE---N  174 (253)
T ss_dssp             -----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---T
T ss_pred             -----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc---c
Confidence                 356666666678999999999999999988877544     345678999999987666666666666543   3


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      +...+ ...++.|..+|.++|.-++..+..+|.+++.-.+.
T Consensus       175 ~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk  214 (253)
T 2db0_A          175 SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK  214 (253)
T ss_dssp             THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred             Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH
Confidence            33222 35688899999999999999999999999984433

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.65  E-value=1.5e-07  Score=78.46  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=81.6

Q ss_pred             cEEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCc-------------
Q 010291          347 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS-------------  408 (513)
Q Consensus       347 Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-------------  408 (513)
                      .+.+.. +|..|.+++.+ +..|++++.|+...-.    +.....|+|++++..+++.+++|+|...             
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~   86 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR   86 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence            355554 67899999998 6789999999975322    2334789999999999999999998743             


Q ss_pred             ------------cccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhc---CChhhHHHHHHHHH
Q 010291          409 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD---ISLENVSSMYELSE  456 (513)
Q Consensus       409 ------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~---~~~~n~~~~~~~a~  456 (513)
                                  +.++.+.+.+|+.||+||++.+|...|.+++...   -+++....++.+..
T Consensus        87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~n  149 (169)
T 3v7d_A           87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN  149 (169)
T ss_dssp             -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC
Confidence                        2356688999999999999999999999988554   45555555544433

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.63  E-value=3.1e-09  Score=85.84  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      ..++.++.+|+++++.+|..|++.|+.+...            .++.|+.+|+++++.+|..|+++|+++..  +     
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~-----   72 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E-----   72 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H-----
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H-----
Confidence            3567888999999999999999998876531            26899999999999999999999999852  1     


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                          ..++.|+.+++++++.++..|+++|.++.  ++         ..++.|+..++++++.++..|+++|.++
T Consensus        73 ----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ----RAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                24788999999999999999999999985  11         3578899999999999999999988653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.62  E-value=7.9e-08  Score=86.68  Aligned_cols=187  Identities=14%  Similarity=0.090  Sum_probs=139.4

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhH
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIA  167 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~  167 (513)
                      .+.+.+.+.+.++..|..|+..|..+..+.+.....- -..+++.|...+. +++..++..|+.++..++..-...-.-.
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3457788888999999999999999986633211100 1235777888884 8999999999999999995432211112


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHH
Q 010291          168 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN  247 (513)
Q Consensus       168 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  247 (513)
                      -...++.++..+.+++..++..+..+|..++.....                                       ..+++
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------------~~ll~  136 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------------EAQQE  136 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------------HHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------------HHHHH
Confidence            234678899999999999999999999988764321                                       13577


Q ss_pred             HHHHHHHHhhcchhhhHHHHHhhccCC--CCc--ceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          248 HLLYLMRVAEKGVQRRVALALAHLCSP--DDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       248 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      .+...+++.++.+|..++..|+.+...  ++.  ...+  ...++.|..++.++++++|..|..++..++....
T Consensus       137 ~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          137 SIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            888889989999999999999996433  221  1122  2578999999999999999999999999886544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.60  E-value=1.1e-06  Score=84.15  Aligned_cols=290  Identities=12%  Similarity=0.141  Sum_probs=183.8

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHH--HHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhCC--Ch
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--AL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~--~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i   89 (513)
                      +++-.+..|+.++..++..+.......  .+.+.  .++..|.. ++...+..++.+|..+... +..|..+.+.+  .+
T Consensus       137 dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~  213 (480)
T 1ho8_A          137 DFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFM  213 (480)
T ss_dssp             SHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHH
T ss_pred             cchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchh
Confidence            334455666666565553222211111  01112  34455554 3455677889999999876 77788887654  35


Q ss_pred             HHHHHhhcC---------------C--ChHHHHHHHHHHHHhhcCCchhhHHHHhcCCh--HHHHHHhCC-CCHHHHHHH
Q 010291           90 QPVIGLLSS---------------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQS-PDVQLREMS  149 (513)
Q Consensus        90 ~~L~~ll~~---------------~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~~l~~-~~~~~~~~a  149 (513)
                      +.++.++..               +  ...+++.++.+++-++.. ++....+...+..  +.|+.+++. ..+++.+.+
T Consensus       214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~  292 (480)
T 1ho8_A          214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC  292 (480)
T ss_dssp             HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHH
Confidence            555543331               1  356789999999999754 4455556655533  566666765 578999999


Q ss_pred             HHHHHHHhhccc-cc----h-hhHhcCChHHHHHHhcCC---CHHHHHHH-------HHHHHhcccCcchHHHHHhhcCc
Q 010291          150 AFALGRLAQDMH-NQ----A-GIAHNGGLVPLLKLLDSK---NGSLQHNA-------AFALYGLADNEDNVADFIRVGGV  213 (513)
Q Consensus       150 ~~~L~~l~~~~~-~~----~-~~~~~~~i~~L~~ll~~~---~~~~~~~a-------~~~L~~l~~~~~~~~~~~~~g~i  213 (513)
                      +.+|.|+..... ..    . .+...++ .++++.|...   |+++.+..       -..+..++.-++...++. .|.+
T Consensus       293 la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-sG~L  370 (480)
T 1ho8_A          293 ISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-SKLL  370 (480)
T ss_dssp             HHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-HTCC
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-cCCc
Confidence            999999997542 11    1 1222334 4555555543   44443322       223334444444444443 3433


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----------hhcchhhhHHHHHhhccCC-CCcceeee
Q 010291          214 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCSP-DDQRTIFI  282 (513)
Q Consensus       214 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----------~~~~v~~~a~~aL~~l~~~-~~~~~~l~  282 (513)
                      .-     ...+.....|..+..++.. .+..++..|+.+|.+          .++.+..-||.=|+.+++. |.++..+-
T Consensus       371 ~W-----SP~H~se~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~  444 (480)
T 1ho8_A          371 CW-----SPPHVDNGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD  444 (480)
T ss_dssp             CC-----CGGGGCHHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             cc-----CCCccchhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHH
Confidence            21     1233444667777766654 566789999999984          4678888899999999874 66888888


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      +.|+-..++++|.+++++||.+|..++..+..+.
T Consensus       445 ~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          445 KTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999999999887654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.7e-07  Score=84.38  Aligned_cols=191  Identities=7%  Similarity=0.011  Sum_probs=138.0

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHH-hhccCchhHHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh--hHH-
Q 010291            7 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP--NIK-   80 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~--~~~-   80 (513)
                      .+-+.+++.++..|..|+..|.. ++.+.++....-.+ ..++..|...+ ++.+..++..|+.+|+.++.+-.  ... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35567789999999999999999 88654432210001 13467788888 68899999999999999985321  111 


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      ..  ....++.++..+.+....++..+..+|..++...++......-..+++.|+..++++++.+++.++.+|..+....
T Consensus       100 ~y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DY--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HH--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            11  1226888899998888999999999999988543211100001135778889999999999999999999998654


Q ss_pred             ccc-hhh--Hh-cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          161 HNQ-AGI--AH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       161 ~~~-~~~--~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ... ..+  .- ...++.|.+++.+.+..++..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            431 221  12 4678889999999999999999999998875

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.57  E-value=2.4e-06  Score=69.54  Aligned_cols=216  Identities=18%  Similarity=0.175  Sum_probs=164.0

Q ss_pred             HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCch
Q 010291           42 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD  120 (513)
Q Consensus        42 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~  120 (513)
                      .+..+++.++.+|.+.-..++.+|+..+..++..-++..+-+     +..|+-+++ +....+....+.+++.++...|+
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            345678899999998888999999999999998877765443     334555544 55667778889999999977776


Q ss_pred             hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      ...     +.+|.+..-..-++++.+.+...+|..++..++.-.    .+.+..+..++.++|..-+..|+..+..+..+
T Consensus       104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            544     356777777788899999999999999986544321    13455688999999987788888888887754


Q ss_pred             cchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cce
Q 010291          201 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRT  279 (513)
Q Consensus       201 ~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~  279 (513)
                      ...                                     +-.-++|.|..+|.+.+.-||..|..+|.+++.-.+ .|.
T Consensus       175 ~~~-------------------------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk  217 (253)
T 2db0_A          175 SFK-------------------------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK  217 (253)
T ss_dssp             THH-------------------------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             Ccc-------------------------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence            321                                     123479999999999999999999999999987543 332


Q ss_pred             eeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          280 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       280 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                            .+..-++-+.+.+..++...-.+|..+.-
T Consensus       218 ------ii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          218 ------VVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             ------HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                  34445566677888888888888887753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.55  E-value=2.3e-06  Score=95.88  Aligned_cols=276  Identities=14%  Similarity=0.097  Sum_probs=179.0

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCc----------------hhHHHH--HhcCCHHHHHHhhcCCCHHHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND----------------ENKNQI--VECNALPTLILMLRSEDSAIHYEA   65 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~i--~~~g~i~~Lv~lL~~~~~~v~~~a   65 (513)
                      .++.++..+++.++.+|..++.++..+.....                .....+  .-..+++.+.+.++++++.+|..+
T Consensus       375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~  454 (1230)
T 1u6g_C          375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC  454 (1230)
T ss_dssp             THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHH
Confidence            46667777777889999999998887764210                001111  112356666777888999999999


Q ss_pred             HHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH
Q 010291           66 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  143 (513)
Q Consensus        66 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~  143 (513)
                      +.+|+.++...+..... .-...++.+...+.+..+  +++..++..+..+..........-.-..+++.++..+.+++.
T Consensus       455 ~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~  533 (1230)
T 1u6g_C          455 FNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY  533 (1230)
T ss_dssp             HHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence            99999998653321100 012356778888887654  899999999998874322221112234789999999999998


Q ss_pred             HHHHHHHHHHHHHhhcccc-------chhhHhcCChHHHHHHh--cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcc
Q 010291          144 QLREMSAFALGRLAQDMHN-------QAGIAHNGGLVPLLKLL--DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ  214 (513)
Q Consensus       144 ~~~~~a~~~L~~l~~~~~~-------~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~  214 (513)
                      .++..++.++..++..-..       .-.-.-...++.++..+  .+.+..++..++.+++.++......  +       
T Consensus       534 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~--~-------  604 (1230)
T 1u6g_C          534 KITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN--L-------  604 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG--C-------
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch--h-------
Confidence            8988899999988843211       10111124566677777  5567889999999999987632110  0       


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCc-ceeeecCCchHHHH
Q 010291          215 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQ-RTIFIDGGGLELLL  291 (513)
Q Consensus       215 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~-~~~l~~~~~i~~L~  291 (513)
                                                  ...++.++..|..  .+...|..++.+++.++..... ...-.-...++.|.
T Consensus       605 ----------------------------~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~  656 (1230)
T 1u6g_C          605 ----------------------------GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA  656 (1230)
T ss_dssp             ----------------------------CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHH
T ss_pred             ----------------------------hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHH
Confidence                                        0122333333332  3445678889999988753211 00111234577888


Q ss_pred             hhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          292 GLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       292 ~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ..+.+.+..+|..++.++..++....
T Consensus       657 ~~l~~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          657 SFLRKNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             HHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            88888899999999999999987653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.55  E-value=2.4e-06  Score=89.23  Aligned_cols=235  Identities=15%  Similarity=0.117  Sum_probs=162.9

Q ss_pred             hhHHHHhhccCC--------HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 010291            5 IPPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS   76 (513)
Q Consensus         5 i~~Lv~lL~~~~--------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~   76 (513)
                      +..|.+.|.+++        +.++..|+..|+.+..|+..       ..+++.|.++|.+.+..++..|+.+|+.+-.++
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGT  503 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT  503 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence            445566665544        67888899999987654321       125677888888777888888999999874443


Q ss_pred             hhHHHHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHH
Q 010291           77 PNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALG  154 (513)
Q Consensus        77 ~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~  154 (513)
                      .+. +      ++..|+..+ ++.+..+++.++.+|+.+..++++.         ++.++..|. +.++.+|..++.+++
T Consensus       504 gn~-~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alg  567 (963)
T 4ady_A          504 GKP-E------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIA  567 (963)
T ss_dssp             CCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CCH-H------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            221 1      244555543 4567889999999999998776653         556666665 468888888888877


Q ss_pred             HHhhccccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHH
Q 010291          155 RLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT  233 (513)
Q Consensus       155 ~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~  233 (513)
                      --..+..+..      +++.|++.+ .+.++.++..|+.+|+.+......                              
T Consensus       568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------------------------  611 (963)
T 4ady_A          568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------------------------  611 (963)
T ss_dssp             HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------------------------
T ss_pred             HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------------------------
Confidence            5544443332      345555444 466788999999999987653321                              


Q ss_pred             HHHHHHHhhhhhHHHHHHH-HHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291          234 LKRLEEKIHGRVLNHLLYL-MRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  312 (513)
Q Consensus       234 ~~~~~~~~~~~~l~~Lv~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  312 (513)
                                 .++.++.. +++.++.+|..++.+|+.++.+...      ..+++.|..+..++++.|+..|+.+|..+
T Consensus       612 -----------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          612 -----------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             -----------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                       13334443 3457889999999999999865442      23577888888899999999999999988


Q ss_pred             hhc
Q 010291          313 ANK  315 (513)
Q Consensus       313 ~~~  315 (513)
                      ...
T Consensus       675 g~g  677 (963)
T 4ady_A          675 LIQ  677 (963)
T ss_dssp             STT
T ss_pred             hcC
Confidence            754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.52  E-value=1.2e-08  Score=82.40  Aligned_cols=121  Identities=20%  Similarity=0.221  Sum_probs=93.7

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      ...++.++.+|+++++.+|..|+++|+.+...            .++.|+.++.++++.++..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            45678899999999999999999998876421            36889999999999999999999999852  1    


Q ss_pred             HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 010291          124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL  197 (513)
Q Consensus       124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  197 (513)
                           ..++.|+..++++++.++..++++|.++..          ...++.|..++.++++.++..|+.+|.++
T Consensus        73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 247889999999999999999999999852          24577899999999999999999988754

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.51  E-value=3.8e-07  Score=69.75  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             cccEEEEecCeeehhhHHHHhhcC-HHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccCHHH-HHH
Q 010291          345 LSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQD  418 (513)
Q Consensus       345 ~~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~  418 (513)
                      ..-|.+.|||..|...+..|.... .+|.+||+++..    ......+-+ |-++..|+.+|+|+.+|.+.++.+. ...
T Consensus         5 ~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~   83 (107)
T 3drz_A            5 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEG   83 (107)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred             CCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence            345788999999999999999775 578999976521    113345555 5799999999999999999876543 478


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHh
Q 010291          419 LLRAADQYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       419 ll~~A~~~~~~~l~~~c~~~l~~  441 (513)
                      +++-|++|++++|++.|++.+.+
T Consensus        84 l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           84 VLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhc
Confidence            99999999999999999998865

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.40  E-value=2.2e-05  Score=82.07  Aligned_cols=243  Identities=14%  Similarity=0.077  Sum_probs=162.7

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ++.|...|.+++..++..|+.+|+.+--|+. +      ..++..|++.+. +.+..+++.++.+|+.+..+.++     
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e-----  541 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLCMLGTG-K------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE-----  541 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-C------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG-----
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-C------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH-----
Confidence            5667777877777777788888887643211 1      113455665543 66788999999999999877665     


Q ss_pred             HhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccc
Q 010291           84 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        84 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                          .++.+++.|. +.++.+|..++.+++.-..+.... .      .++.|+..+. +.+..+|..|+.+|+.+..+.+
T Consensus       542 ----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          542 ----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             ----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             ----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence                4666777665 577888988888887665443221 1      3555555544 5678899999999999875543


Q ss_pred             cchhhHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          162 NQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       162 ~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                              ..++.++. +..+.++.++..++.+|+.++.....                                     
T Consensus       611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------------------------------------  645 (963)
T 4ady_A          611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------------------------------------  645 (963)
T ss_dssp             --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------------------------------------
T ss_pred             --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------------------------------------
Confidence                    23455555 44678899999999999999864432                                     


Q ss_pred             hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC--CCcchhhhHHHHHHHhhhccc
Q 010291          241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~  317 (513)
                        ..++..|..++++++..|+..|+.+|+.+.....+...-.-.+....|.....+  .++..+..+..+.+-+.....
T Consensus       646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~  722 (963)
T 4ady_A          646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR  722 (963)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred             --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence              235666777788899999999999999997654432110012234555566654  355567677666665544433

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=98.38  E-value=6.8e-07  Score=68.49  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=62.8

Q ss_pred             cEEEE-ecCeeehhhHHHHhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccC
Q 010291          347 DVTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVT  412 (513)
Q Consensus       347 Dv~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~  412 (513)
                      -+.+. .+|..|.+++.+ +..|+.++.|+..  .+.|+....|+|++++..+++.+++|+|.-.           .+++
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd   96 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   96 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence            35555 378999999995 6799999999974  3456656789999999999999999998643           2477


Q ss_pred             HHHHHHHHHHHHHhcH
Q 010291          413 LDIAQDLLRAADQYLL  428 (513)
Q Consensus       413 ~~~~~~ll~~A~~~~~  428 (513)
                      .+.+.+|+.||+||++
T Consensus        97 ~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           97 PEIALELLMAANFLDC  112 (112)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999974

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.2e-06  Score=78.91  Aligned_cols=195  Identities=12%  Similarity=0.103  Sum_probs=137.0

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHH-hhcCCchhhHHHHh-cCChHHHHHHh-CCCCHHHHHHHHHHHHHHhhccc-cchh-
Q 010291           91 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMH-NQAG-  165 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~-~~~~-  165 (513)
                      .+.+.+.+.++.-|..|+..|.. +..+.+.....-.+ ...+..|.+.+ ++.+..++..|+.+|..++.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566778899999999999999 87554332100001 13467788888 78899999999999999995432 1111 


Q ss_pred             hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 010291          166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV  245 (513)
Q Consensus       166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (513)
                      -.....++.++..+.+....++..+..++..++.+.....   ..+                             .-..+
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---~~~-----------------------------~l~~l  147 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---SSG-----------------------------RNEDM  147 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---TTC-----------------------------TTHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---cCC-----------------------------cHHHH
Confidence            1122467789999999999999988888888876321000   000                             01236


Q ss_pred             HHHHHHHHHHhhcchhhhHHHHHhhccCCCCc--ce--eeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          246 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RT--IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       246 l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~--~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ++.|+..|+++++.+|..++.+|..++.....  ..  ..+....+|.|.+++.++++++|..|..++..++....
T Consensus       148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            78888999999999999999999999753321  11  11124688999999999999999999999998876543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.21  E-value=6e-05  Score=68.65  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=124.6

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-   84 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-   84 (513)
                      ..+++.|.+++...+..++..|..+-..+.+....+++.+|+..|+......+.+.+..++.+|.++-...... ..++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhC
Confidence            45677788888888999999999955557899999999999999999999989999999999999998764443 3333 


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--------c--CChHHHHHHhC---CCCHHHHHHHHH
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--------R--GAVRPLIEMLQ---SPDVQLREMSAF  151 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~--~~i~~L~~~l~---~~~~~~~~~a~~  151 (513)
                      ....|..+..++.+.+..+.+.|+..|..++..++.+...+.+        .  .-.+.|+.+|+   +.|.+++.+|..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            4457888888999888999999999999999776644433322        1  23778999997   679999999998


Q ss_pred             HHHHHhhcccc
Q 010291          152 ALGRLAQDMHN  162 (513)
Q Consensus       152 ~L~~l~~~~~~  162 (513)
                      .+..+....+.
T Consensus       280 LIN~lL~~apd  290 (339)
T 3dad_A          280 LINKTLAALPD  290 (339)
T ss_dssp             HHHHHHHHCSS
T ss_pred             HHHHHHhcCCC
Confidence            88877765444

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.04  E-value=0.00012  Score=70.18  Aligned_cols=229  Identities=15%  Similarity=0.160  Sum_probs=144.9

Q ss_pred             HHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcC--CHHHHHHhhcC---------------C--CHHHHHHHHH
Q 010291            8 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRS---------------E--DSAIHYEAVG   67 (513)
Q Consensus         8 Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~~---------------~--~~~v~~~a~~   67 (513)
                      ++..|.. ++.+.+.-++.+|..+.. .++.|..+.+.+  .++.++..++.               +  ...++..++.
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            3444544 245567788999999998 788888887653  35666544331               1  2456888999


Q ss_pred             HHHHhhcCChhHHHHHHhCCCh--HHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhh----H-HHHhcCChHHHHHHhC
Q 010291           68 VIGNLVHSSPNIKKEVLAAGAL--QPVIGLLSS-CCSESQREAALLLGQFAATDSDCK----V-HIVQRGAVRPLIEMLQ  139 (513)
Q Consensus        68 ~L~~l~~~~~~~~~~~~~~g~i--~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~----~-~~~~~~~i~~L~~~l~  139 (513)
                      ++|.++.+ +...+.+...+..  +.|+..++. ....+.+-+..+|.|+....+...    . .++..++ ..+++.|.
T Consensus       251 ~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~  328 (480)
T 1ho8_A          251 LIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS  328 (480)
T ss_dssp             HHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred             HHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence            99999977 5555666666533  455665654 568899999999999987653211    2 2222334 44555665


Q ss_pred             C---CCHHHHHHHHHHHHHHhhc----------------------cccch---------hhHhc--CChHHHHHHhcC--
Q 010291          140 S---PDVQLREMSAFALGRLAQD----------------------MHNQA---------GIAHN--GGLVPLLKLLDS--  181 (513)
Q Consensus       140 ~---~~~~~~~~a~~~L~~l~~~----------------------~~~~~---------~~~~~--~~i~~L~~ll~~--  181 (513)
                      .   .|+++.+..-.....|...                      +..+.         ++.+.  ..+..|+++|.+  
T Consensus       329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~  408 (480)
T 1ho8_A          329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  408 (480)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence            4   3777655443333222211                      11111         12221  125668888873  


Q ss_pred             --------CCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010291          182 --------KNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL  252 (513)
Q Consensus       182 --------~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~l  252 (513)
                              .|+.+...||.-|+.+++ +|..+..+.+.                                 |+=..++.+
T Consensus       409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l---------------------------------g~K~~VM~L  455 (480)
T 1ho8_A          409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT---------------------------------GGKADIMEL  455 (480)
T ss_dssp             HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH---------------------------------SHHHHHHHH
T ss_pred             cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc---------------------------------CcHHHHHHH
Confidence                    357788889999999998 55544433332                                 345667889


Q ss_pred             HHHhhcchhhhHHHHHhhcc
Q 010291          253 MRVAEKGVQRRVALALAHLC  272 (513)
Q Consensus       253 L~~~~~~v~~~a~~aL~~l~  272 (513)
                      |.++|++|+.+|+.++..+.
T Consensus       456 m~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          456 LNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             TSCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999987653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.82  E-value=0.00074  Score=61.56  Aligned_cols=151  Identities=13%  Similarity=0.079  Sum_probs=116.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  126 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  126 (513)
                      +..+++-|.+.+...++.++.-|..+..........++..+|+..|+......+.+.+..++.+|.++... ......++
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvv  198 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchh
Confidence            34566667777788889999999985545577788999999999999999999999999999999999854 33333333


Q ss_pred             -hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh--------cC---ChHHHHHHhc---CCCHHHHHHHH
Q 010291          127 -QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH--------NG---GLVPLLKLLD---SKNGSLQHNAA  191 (513)
Q Consensus       127 -~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~---~i~~L~~ll~---~~~~~~~~~a~  191 (513)
                       ...++..+..++.+.+..+.+.|+..|..++...+....++.        ..   ....|+.+|.   ..|.+++.++.
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             566889999999988999999999999999977654322211        11   2667999997   67888888887


Q ss_pred             HHHHhcc
Q 010291          192 FALYGLA  198 (513)
Q Consensus       192 ~~L~~l~  198 (513)
                      ..|-.+-
T Consensus       279 tLIN~lL  285 (339)
T 3dad_A          279 TLINKTL  285 (339)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.81  E-value=0.00062  Score=72.15  Aligned_cols=257  Identities=13%  Similarity=0.133  Sum_probs=170.1

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKND---ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIK   80 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~   80 (513)
                      +..|.+.+......  +.|+.++..++....   ..-..+  .+.++.++....+....||..|-.++..+...- +...
T Consensus        56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            34444444443223  889999999985322   221222  256888888888888999999888887776532 3222


Q ss_pred             HHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           81 KEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                           ...++.|+..+.+. .+..+..|+.++..++...+. .....-..++|.+...+-+..+++...|..++..+|..
T Consensus       132 -----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~  205 (986)
T 2iw3_A          132 -----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET  205 (986)
T ss_dssp             -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence                 23578888888765 688999999999999865543 22233356888888999999999999999999999976


Q ss_pred             cccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHH
Q 010291          160 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE  239 (513)
Q Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~  239 (513)
                      -.|+..   ...++.|++.+.+++.  ...++..|+.-+.-.+.                                    
T Consensus       206 ~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v------------------------------------  244 (986)
T 2iw3_A          206 VDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV------------------------------------  244 (986)
T ss_dssp             CCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC------------------------------------
T ss_pred             CCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee------------------------------------
Confidence            666543   2568889999988744  33445555544432221                                    


Q ss_pred             Hhhhh----hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCccee--eecCCchHHHHhhhcC-CCcchhhhHHHHHHHh
Q 010291          240 KIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI--FIDGGGLELLLGLLGS-TNPKQQLDGAVALFKL  312 (513)
Q Consensus       240 ~~~~~----~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~--l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l  312 (513)
                        +.-    .+|.|..-|......++..++.++.|+|.--+....  -.--..+|-|.+.... .+|++|..+..++..|
T Consensus       245 --~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          245 --TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             --CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             --cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence              111    244455555556788889999999999974332211  1112345555555544 8899998888887777


Q ss_pred             hh
Q 010291          313 AN  314 (513)
Q Consensus       313 ~~  314 (513)
                      .+
T Consensus       323 ~~  324 (986)
T 2iw3_A          323 RR  324 (986)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=97.60  E-value=7.4e-05  Score=62.88  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CCcccEEEEecCeeehhhHHHHhhcC-HHHHHhccCCC--C--CCCCCceecCCCCHHHHHHHHHHHhcCccccCHHH-H
Q 010291          343 ATLSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGY--R--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-A  416 (513)
Q Consensus       343 ~~~~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~--~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~  416 (513)
                      +...-|.+.|||..|...+..|.... .+|..||.++.  .  ....+.+-+ |-++..|+.+|+|+-+|.+.++.+. .
T Consensus         9 ~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~   87 (202)
T 3drx_A            9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAE   87 (202)
T ss_dssp             CCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCH
T ss_pred             CCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCH
Confidence            34456788999999999999998654 47889987642  1  112345555 4599999999999999999876543 4


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~  441 (513)
                      ..++.-|+||+++.|.+.|++.+.+
T Consensus        88 ~~l~eEA~FygL~~Lv~~l~~~i~e  112 (202)
T 3drx_A           88 EGVLEEAEFYNITSLIKLVKDKIRE  112 (202)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHHHHHHH
Confidence            6799999999999999999998865

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.53  E-value=0.00018  Score=69.48  Aligned_cols=241  Identities=14%  Similarity=0.118  Sum_probs=151.9

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhc-C------CC---HHHHHHHHHHHHHh
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLR-S------ED---SAIHYEAVGVIGNL   72 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~-~------~~---~~v~~~a~~~L~~l   72 (513)
                      .+.|+.-|-++.+++|..|+-+|+.+.+...........  ....-.++-.|. +      +|   .-||+.|+.+|+.+
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            345666677899999999999999997643321111111  122223333332 1      12   45899999999998


Q ss_pred             hcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHH
Q 010291           73 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA  152 (513)
Q Consensus        73 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~  152 (513)
                       ..-+..      ..++..++..+....++++..+...|..+...   ...   -.++++.++..|++.|.+|+..|+.+
T Consensus       256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DL---L~~---Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEF---VED---KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGG---CCC---HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHH---HHH---HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence             544432      34555555556778899999999999988211   111   24568888899999999999999999


Q ss_pred             HHHHhhccccchhhHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHH
Q 010291          153 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV  230 (513)
Q Consensus       153 L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~  230 (513)
                      |.-++ .++.-     ...+..+...|.+-|  ..-.......|+.|+..+..      ..                   
T Consensus       323 LiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~-------------------  371 (800)
T 3oc3_A          323 LCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS-------------------  371 (800)
T ss_dssp             HTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC-------------------
T ss_pred             hhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc-------------------
Confidence            99988 11111     123344555555432  12233455566666665421      00                   


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHH-hhhcCCCcchhhhHHHHH
Q 010291          231 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLGSTNPKQQLDGAVAL  309 (513)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~~L  309 (513)
                                .+...+|.|..+++++-+.||..++.++..+.          ....+..+. +++-..+++++..+..+-
T Consensus       372 ----------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          372 ----------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             ----------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             ----------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence                      12357889999999999999999999998876          222343333 444567888877665544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0029  Score=57.73  Aligned_cols=186  Identities=11%  Similarity=0.061  Sum_probs=124.6

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCchhH--HHHH-h-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----
Q 010291            8 LVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV-E-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-----   78 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~i~-~-~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-----   78 (513)
                      +-+.|.|.++..|..|+..|..+....+...  .... . ....+.+-..+.+.|..++..++.++..++.....     
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            6678899999999999999988876433211  1111 1 23455666788899999999999999988753211     


Q ss_pred             HHHHHHhCCChHHHHH-hhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           79 IKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        79 ~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ......-...++.|+. .+.+....++..+..++..++...... ..     +++.+...+++.+|.++..++..|..+.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            1111122335666665 467788889988888888776432221 11     2456777888899999999999998887


Q ss_pred             hccccch---hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          158 QDMHNQA---GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       158 ~~~~~~~---~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      .....+.   ...-...++.+..++.+.++.|+..|..++..+-.
T Consensus       168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            5422211   11112345568888999999999999999988765

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.45  E-value=0.004  Score=67.71  Aligned_cols=304  Identities=12%  Similarity=0.067  Sum_probs=160.8

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh------hHH
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP------NIK   80 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~------~~~   80 (513)
                      .+++.+.++++.+|..++.++..++...  ...  ...+.++.|++++.++++..+..++.+|..++....      +.+
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d--~p~--~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~  164 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSD--FPD--RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELF  164 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHH--STT--TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhh--Ccc--chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence            4555665566888999999999988631  111  135678889999988888899999999999986321      222


Q ss_pred             HHHH--hCCChHHHHH-------hhcCCCh---------HHHHHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhCCC
Q 010291           81 KEVL--AAGALQPVIG-------LLSSCCS---------ESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP  141 (513)
Q Consensus        81 ~~~~--~~g~i~~L~~-------ll~~~~~---------~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~  141 (513)
                      ..+.  -....+.++.       .+.....         ++...++.++.++...+ ++...... ...++.+..++...
T Consensus       165 ~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~  243 (960)
T 1wa5_C          165 LEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYS  243 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCC
Confidence            2111  0112333333       2443321         22334566666664322 22111100 22345556666431


Q ss_pred             ------C---------HHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc-----CCCHHHHHHHHHHHHhcccCc
Q 010291          142 ------D---------VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-----SKNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       142 ------~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~  201 (513)
                            +         ..++..++.+|..+.......-.-.-...+...++.+.     ..++.+...++..+..++..+
T Consensus       244 ~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~  323 (960)
T 1wa5_C          244 NPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP  323 (960)
T ss_dssp             SCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH
T ss_pred             CCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH
Confidence                  1         24677888888877743322110001123334445443     345678888888888877543


Q ss_pred             chH---------HHHHhhcCccccc--chh------------------hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010291          202 DNV---------ADFIRVGGVQKLQ--DGE------------------FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL  252 (513)
Q Consensus       202 ~~~---------~~~~~~g~i~~L~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~l  252 (513)
                      ...         ..+++.-.++.+.  ...                  ......+.|....++.+.......+++.++..
T Consensus       324 ~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~  403 (960)
T 1wa5_C          324 KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAH  403 (960)
T ss_dssp             HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHH
Confidence            221         1122111111110  000                  01113345555666666666555566665555


Q ss_pred             H----H------HhhcchhhhHHHHHhhccCCCCcceeeecC-----CchHH----HHhhhcCC---CcchhhhHHHHHH
Q 010291          253 M----R------VAEKGVQRRVALALAHLCSPDDQRTIFIDG-----GGLEL----LLGLLGST---NPKQQLDGAVALF  310 (513)
Q Consensus       253 L----~------~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~-----~~i~~----L~~ll~~~---~~~v~~~a~~~L~  310 (513)
                      +    .      +.++..++.|+.+++.++........-...     ...+.    ++..+.++   ++-+|..|+|++.
T Consensus       404 i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg  483 (960)
T 1wa5_C          404 MKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY  483 (960)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHH
Confidence            4    4      345567889999999997532111100011     23333    33344555   8889999999999


Q ss_pred             Hhhhc
Q 010291          311 KLANK  315 (513)
Q Consensus       311 ~l~~~  315 (513)
                      .++..
T Consensus       484 ~~~~~  488 (960)
T 1wa5_C          484 TFRNQ  488 (960)
T ss_dssp             HTGGG
T ss_pred             HHHhh
Confidence            98864

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.42  E-value=0.00014  Score=64.43  Aligned_cols=185  Identities=16%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .+++++++.+|..++..+                  ....+..+++++++.||..++..|                  ..
T Consensus        57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~  100 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR  100 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred             HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence            455778888888888743                  123466777788888888887542                  12


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      +.+..+++++++.|+..++..+   .               .+.+..+++++++.++..++..   +.            
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~------------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP------------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC------------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC------------
Confidence            4566777788888887777632   1               1134455677778888777652   11            


Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 010291          170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL  249 (513)
Q Consensus       170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  249 (513)
                        .+.+..+++++++.++..++..+   ..           ..+..+.+     +.....-..+...+       ..+.|
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~l---~~-----------~ll~~ll~-----D~d~~VR~aaa~~l-------~~~~L  199 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKRL---PE-----------ESLGLMTQ-----DPEPEVRRIVASRL-------RGDDL  199 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHHS---CG-----------GGGGGSTT-----CSSHHHHHHHHHHC-------CGGGG
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHcC---CH-----------HHHHHHHc-----CCCHHHHHHHHHhC-------CHHHH
Confidence              12344556667777777666641   10           00111100     00000000011110       23445


Q ss_pred             HHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHH
Q 010291          250 LYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL  309 (513)
Q Consensus       250 v~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L  309 (513)
                      ..++.++++.||..++..++                 .+.|..+ .++++.|+..+...|
T Consensus       200 ~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          200 LELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            66677788888888887753                 3556666 778888887776543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.35  E-value=0.0043  Score=53.90  Aligned_cols=172  Identities=15%  Similarity=0.206  Sum_probs=124.7

Q ss_pred             HHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhhc-CChhHHHHHHhCCChHHHHH
Q 010291           21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIG   94 (513)
Q Consensus        21 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~   94 (513)
                      .+|+..|.-++. +++.+..+.+.++.-.|.++|+..+     ..+|..+++.++.+.+ ++++.-..+.+.+++|..++
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            466667777786 8999999999998888888888432     5789999999999986 44566677778999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCchhhHH------HHh-cCChHHHH-HHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291           95 LLSSCCSESQREAALLLGQFAATDSDCKVH------IVQ-RGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAGI  166 (513)
Q Consensus        95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~------~~~-~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  166 (513)
                      .++.++.-.+.-|..++..+..++.+..-.      +.. ..++..++ .+.+++++.+.++.+++-..|+.++..+..+
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL  232 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL  232 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999999999987554332111      111 12333333 3445679999999999999999988877766


Q ss_pred             Hhc-------CChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 010291          167 AHN-------GGLVPLLKLLDSKNGSLQHNAAFALYGL  197 (513)
Q Consensus       167 ~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l  197 (513)
                      ...       |.+   ...+ .+|+..+..-...+.|+
T Consensus       233 ~~~LP~~Lrd~tf---~~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          233 RQCLPDQLKDTTF---AQVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHSCGGGTSSTT---HHHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHhCcHHhhChHH---HHHH-hcCHHHHHHHHHHHHhc
Confidence            541       222   2223 35777777666666665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.29  E-value=0.023  Score=50.56  Aligned_cols=178  Identities=11%  Similarity=0.036  Sum_probs=122.1

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCChh--H
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPN--I   79 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~a~~~L~~l~~~~~~--~   79 (513)
                      +.+...|-+.+..-+..|+..|......+++....     .++.+++.+    .+.|..+...++.+|..+...-..  .
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            34556666778888888988888876543332211     233334432    367888999999888887421000  0


Q ss_pred             HHHHHh-CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           80 KKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        80 ~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      +-.-.+ .-.+|.|+.-+.++...+|..+-.++..++...+..       .+.+.++.-+++.+...++.++..+..+-.
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            000001 125788899898888999988888887776432322       246678888999999999999999999875


Q ss_pred             ccccchhhHhcCCh---HHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          159 DMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       159 ~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      .....    ...++   +.+.+++.+.|..++..|+.++..+-.
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            43322    23467   889999999999999999999986654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.22  E-value=0.01  Score=62.96  Aligned_cols=181  Identities=11%  Similarity=0.077  Sum_probs=122.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .++.++..+.+....+|..|-.++..+...-+....    ..++|.|+..|.+. ....+..|+.++..++...+.. -.
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~  170 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VA  170 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HH
Confidence            456777777778889998888888877754222221    23588899888744 6789999999999999765432 11


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh---c
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ---D  159 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~---~  159 (513)
                      ..-..++|.+...+-+..++++..|..++..+|..-. +++   -...+|.|++.+.+++.  .   -.++..|+.   .
T Consensus       171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d---~~~~~~~~~~~~~~p~~--~---~~~~~~l~~~tfv  241 (986)
T 2iw3_A          171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD---IERFIPSLIQCIADPTE--V---PETVHLLGATTFV  241 (986)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT---TGGGHHHHHHHHHCTTH--H---HHHHHHHTTCCCC
T ss_pred             HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc---hhhhHHHHHHHhcChhh--h---HHHHHHhhcCeeE
Confidence            1223578888888888899999999999999984321 111   12579999999998854  2   344455543   2


Q ss_pred             cccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          160 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      .+....-. +=.+|.|.+-|......+++.++-++.|||.
T Consensus       242 ~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          242 AEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             SCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred             eeecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence            22211100 0123445566777788899999999999997

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.93  E-value=0.063  Score=48.92  Aligned_cols=198  Identities=15%  Similarity=0.178  Sum_probs=144.1

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHH----HHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN----QIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~----~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      +.+..|+..|..=+-+.|..+..+..++.+...+.+.    .+..  --..+.-++. -+++++-..+-..|+....+ +
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~-e  154 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRH-E  154 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-H
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHh-H
Confidence            4556677777777888899999988888875443322    2222  1222222333 24566666666677777765 7


Q ss_pred             hHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           78 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        78 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      ...+.+...+.+-.+.+.+..++.++...|..++..+-............   ..+....-+++.+++--++..++..|+
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            77778888888888999999999999999999999887554443333333   235667778999999999999999999


Q ss_pred             HHhhccccchhh----HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          155 RLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       155 ~l~~~~~~~~~~----~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      .+-.+..+...+    .+...+..++.+|++++..++..|..+.--+..++..
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            999887775433    3456688899999999999999999988877776654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.90  E-value=0.032  Score=60.65  Aligned_cols=255  Identities=9%  Similarity=0.067  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC-----
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-----   86 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----   86 (513)
                      ..|..|...|..++...+   ..+.. .+++.+.+.+.      +++...++.|+.+++.++.+...... ....     
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~  450 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLL  450 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-Ccccccccc
Confidence            456677778888876422   12211 12333334444      45667899999999999853211000 0000     


Q ss_pred             CChH----HHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           87 GALQ----PVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        87 g~i~----~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ...+    .++..+.++   ++-+|..++|+++.++..-+.  ..  -..+++.++..+.++++.++..|+++|.+++..
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--AQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--HH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--HH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            1112    233334555   789999999999999864321  11  234678888999988999999999999999874


Q ss_pred             cc---------cchhhHh--cCChHHHHHHhcCCC---HH--HHHHHHHHHHhcccC--cchHHHHHhhcCcccccchhh
Q 010291          160 MH---------NQAGIAH--NGGLVPLLKLLDSKN---GS--LQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEF  221 (513)
Q Consensus       160 ~~---------~~~~~~~--~~~i~~L~~ll~~~~---~~--~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~~~~  221 (513)
                      ..         .+..+..  ...++.|+.++....   .+  ....+..+|..++..  ++...                
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p----------------  590 (960)
T 1wa5_C          527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP----------------  590 (960)
T ss_dssp             BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG----------------
T ss_pred             ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh----------------
Confidence            22         1222211  233445666666541   11  123445555544321  11100                


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----hhcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhc
Q 010291          222 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLG  295 (513)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-----~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~  295 (513)
                                         +-..+++.|...+..     .++..+..+..+|+.++.. ......-.....+|.+...+.
T Consensus       591 -------------------~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~  651 (960)
T 1wa5_C          591 -------------------LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFS  651 (960)
T ss_dssp             -------------------GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence                               011234444444443     2344555667777777653 111112223345688888887


Q ss_pred             CCCcchhhhHHHHHHHhhhcc
Q 010291          296 STNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       296 ~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ....+....+...+..+....
T Consensus       652 ~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          652 EDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             TTCTTTHHHHHHHHHHHHHHC
T ss_pred             hhhHhhHHHHHHHHHHHHHhc
Confidence            766677777777777776553

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.86  E-value=0.0093  Score=54.32  Aligned_cols=204  Identities=12%  Similarity=0.123  Sum_probs=151.1

Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh----HHHHh-cCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      +.+...+.+..|+..+..-+.+.+..++.+..++.+...+.+    ..+.. ..++..|+..-  +++++.-.+-..|+.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence            345566888899999999999999999999999987654432    22322 22333333333  355677788888999


Q ss_pred             HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291          156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  234 (513)
Q Consensus       156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  234 (513)
                      +.++....+.+...+.+..+.+++..++-++...|..++..+- .+.....+++...                       
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n-----------------------  206 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-----------------------  206 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-----------------------
Confidence            9888888888888888999999999999999888888887664 3544444443321                       


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcc----eeeecCCchHHHHhhhcCCCcchhhhHHHHHH
Q 010291          235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  310 (513)
Q Consensus       235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  310 (513)
                            + ..+....-.+|.+++.-.+..++..|+.+-.+..+.    +.+.+..-+..++.+|.+++..+|.+|-.+..
T Consensus       207 ------y-d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK  279 (341)
T 1upk_A          207 ------Y-DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  279 (341)
T ss_dssp             ------H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ------H-HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence                  1 236677778899999999999999999997665532    34444455788999999999999999998888


Q ss_pred             Hhhhcc
Q 010291          311 KLANKA  316 (513)
Q Consensus       311 ~l~~~~  316 (513)
                      -+..++
T Consensus       280 vFVANP  285 (341)
T 1upk_A          280 VFVANP  285 (341)
T ss_dssp             HHHHCS
T ss_pred             eeeeCC
Confidence            777653

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.76  E-value=0.023  Score=49.40  Aligned_cols=192  Identities=13%  Similarity=0.127  Sum_probs=135.5

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHH-------hhcCCC-----HHHHHHHHHHHHHhhcCChhHHHH
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLIL-------MLRSED-----SAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~-------lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +++.|+.|+..|+.--...++....+-. .|.+..|++       .+..+.     ..-...|+..|..+|.+ ++.|..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            4556888887777655544454444444 466666654       222111     12234566666777765 888999


Q ss_pred             HHhCCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhc-CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      +++.++.-.|..+|+..+     +.+|-.+.++++.+.. ++++....+.+.+++|..++.++.++.-.+..|..++..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999999999988643     4678888888888873 4556667778899999999999999999999999999999


Q ss_pred             hhccccchhhHh--------cCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291          157 AQDMHNQAGIAH--------NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  208 (513)
Q Consensus       157 ~~~~~~~~~~~~--------~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  208 (513)
                      -.++.+-..+..        ...+.. +..+..++++.+..+.+++-..|+.++..+..+.
T Consensus       173 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~  233 (268)
T 2fv2_A          173 LLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR  233 (268)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             hccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            877766443322        112222 2344567889999999999999999887766554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.093  Score=47.61  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=124.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHH--HHHH-h-CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-----h
Q 010291           50 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVL-A-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS-----D  120 (513)
Q Consensus        50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~-~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----~  120 (513)
                      +-+-|.+.+...|..|+..|..+....+...  .... . ....+.+...+.+.+..+...++.++..++....     .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5677889999999999999988876543221  1111 1 1345667778888999999999999998874321     1


Q ss_pred             hhHHHHhcCChHHHHHH-hCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          121 CKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      ......-..+++.|+.- +.+..+.++..+..++..++........     .+..+...+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            11122234567777754 7888899999999988887753332222     23456677889999999998888887653


Q ss_pred             CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          200 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       200 ~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                      .-..       ..++.                       ...-..+++.+..++.+.++.||..|..++..+..
T Consensus       169 ~fg~-------~~~~~-----------------------k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          169 AFGL-------TNVNV-----------------------QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHTT-------TTCCH-----------------------HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HhCC-------CcCCc-----------------------hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            1000       00000                       00011356677888999999999999999988754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.61  E-value=0.038  Score=49.24  Aligned_cols=181  Identities=8%  Similarity=-0.039  Sum_probs=117.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc-hhhH-
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIA-  167 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-  167 (513)
                      +.+...+-+.+..-+..++..|......+++......+ .+++++.-.+.+.+..+...++.+|..+...-..+ ..+. 
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            34455555667777777777777765443332211111 13444444455789899888888888875321111 1111 


Q ss_pred             -h-cCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhh
Q 010291          168 -H-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR  244 (513)
Q Consensus       168 -~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (513)
                       + .-.+|.|+.-+.+..+.++..+-.++..++. .+                                        ...
T Consensus       128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------------------------------------~~~  167 (266)
T 2of3_A          128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------------------------------------PLK  167 (266)
T ss_dssp             HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------------------------------------HHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------------------------------------HHH
Confidence             1 2356778888888888888887777766653 11                                        122


Q ss_pred             hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCch---HHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          245 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       245 ~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +.+.++.-+++.++..|..++..+..+.......    ...++   +.+..++.+.+..+|..|..++..+-.+
T Consensus       168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            5666777778888888999988888875321111    23468   9999999999999999999988876554

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=96.29  E-value=0.00072  Score=51.84  Aligned_cols=95  Identities=14%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             cEEEEecCeeehhhHHHHhhcC-HHHHHhccCCC-CCCCCCceecCCCCHHHHHHHHHHHhcCccccCHH-HHHHHHHHH
Q 010291          347 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA  423 (513)
Q Consensus       347 Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A  423 (513)
                      -|.+.|||..|...+..|.... .++.+|+++.. .....+.+-+ |=++..|..+|+|+.+|.+.++.+ ....+++-|
T Consensus         6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea   84 (115)
T 3kvt_A            6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   84 (115)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence            4788999999999999998663 34556665421 1123345555 458999999999999999977653 367899999


Q ss_pred             HHhcHHHHHH--HHHHHHHhc
Q 010291          424 DQYLLEGLKR--LCEYTIAQD  442 (513)
Q Consensus       424 ~~~~~~~l~~--~c~~~l~~~  442 (513)
                      ++|+++...-  -|...+.+.
T Consensus        85 ~fy~i~~~~l~~CC~~~~~~~  105 (115)
T 3kvt_A           85 EFWGLDSNQVEPCCWMTYTAH  105 (115)
T ss_dssp             HHHTCCGGGBCGGGSHHHHSC
T ss_pred             HHhCCChHHHHHHHHHHHHhc
Confidence            9999987542  255554443

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=96.17  E-value=0.0056  Score=47.56  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=65.1

Q ss_pred             ccEEEEecCeeehhhHHHHhhcCHHHHHhccCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHH-HHHHHH
Q 010291          346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL  420 (513)
Q Consensus       346 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll  420 (513)
                      .-|.+.|||..|...+..|....   ..||...    +.....+.+-++ =++..|+.+|+|+-+|.+.++.+ .+..++
T Consensus        13 ~~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~   88 (124)
T 1s1g_A           13 ELIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYD   88 (124)
T ss_dssp             CEEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC-SCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred             CEEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc-CChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence            45888999999999999997542   2344321    111233455554 49999999999999999987654 478899


Q ss_pred             HHHHHhcHHHHH--HHHHHHHH
Q 010291          421 RAADQYLLEGLK--RLCEYTIA  440 (513)
Q Consensus       421 ~~A~~~~~~~l~--~~c~~~l~  440 (513)
                      +-|++|+++.+.  ..|.....
T Consensus        89 ~Ea~fy~i~~l~l~~cC~~~~~  110 (124)
T 1s1g_A           89 DELAFYGILPEIIGDCCYEEYK  110 (124)
T ss_dssp             HHHHHTTCCGGGBCHHHHHHHH
T ss_pred             HHHHHcCCChHHHHHHHHHHHH
Confidence            999999999873  34444443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.99  E-value=0.11  Score=44.86  Aligned_cols=138  Identities=16%  Similarity=0.102  Sum_probs=96.5

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH-hhcCCChHHHHHHHHHHHHhhc-CCchhhHHHHhcC
Q 010291           52 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRG  129 (513)
Q Consensus        52 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~  129 (513)
                      .+..++..++|..|+.+|+.+ ...+         ..++.+.. +..+....|++.++.++..++. .+++        .
T Consensus        78 ~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~  139 (240)
T 3l9t_A           78 LAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K  139 (240)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred             HHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence            444567789999999998888 3211         14566665 5567789999999999999984 4444        2


Q ss_pred             ChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHH
Q 010291          130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFI  208 (513)
Q Consensus       130 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~  208 (513)
                      .++.+....++++..+|..|...+.--+.....+  .--.-.++.|-.+..+++.-|+....+.|..++. +++....++
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~  217 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL  217 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence            5678889999999999999998876544321111  0001234445556667788899999999999998 666666655


Q ss_pred             h
Q 010291          209 R  209 (513)
Q Consensus       209 ~  209 (513)
                      +
T Consensus       218 ~  218 (240)
T 3l9t_A          218 K  218 (240)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.83  E-value=0.25  Score=47.32  Aligned_cols=123  Identities=18%  Similarity=0.128  Sum_probs=94.5

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG   94 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   94 (513)
                      +++..+.-|+..|......-|+....     ++..++.++.+++..+|..|++.|..+|.+ +.. ..     +...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-~k-----iaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-PR-----VADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-HH-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-hh-----HHHHHHH
Confidence            56888888999898888877776655     477899999999999999999999999987 332 22     4678899


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           95 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      +|.++++.-....-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            99988887777777888888765554        34556666666677888888777775543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.73  E-value=0.057  Score=58.75  Aligned_cols=134  Identities=13%  Similarity=0.069  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---R--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .++..++.|+.+++.++.+-.....     ..++.+++++   .  ++++.+|..++++++.++..-....+.+  ..++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence            5778899999999999876332211     2233344333   3  3489999999999999985321111111  1245


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQD  159 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~  159 (513)
                      +.++..++   +.++..|++++.+++........ -.-..++..+..++..+  +...+..+..+++.++..
T Consensus       549 ~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          549 NLLVRGLN---SSMSAQATLGLKELCRDCQLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC---hHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            66666662   78999999999999954332211 11234566667777763  678889999999998854

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.73  E-value=0.071  Score=51.95  Aligned_cols=214  Identities=16%  Similarity=0.090  Sum_probs=125.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChHHHHHhhc---------C-CChHHHHHHHHHHHHh
Q 010291           47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLS---------S-CCSESQREAALLLGQF  114 (513)
Q Consensus        47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~---------~-~~~~~~~~a~~~L~~l  114 (513)
                      ...|+.-|-++..++|-.|+.+|+.+..............  ...-.++.++.         + --..||+.|+.+|+.+
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            4556666668899999999999999875422110000011  11222222221         1 1258999999999998


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291          115 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL  194 (513)
Q Consensus       115 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  194 (513)
                       ..-+..      ..++..++..+..+.=+++..++-.|..+.   +--..  -.+.++.++..|.+.+++++..|+.+|
T Consensus       256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL  323 (800)
T 3oc3_A          256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAELL  323 (800)
T ss_dssp             -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence             554443      234444555556667789999999999881   11111  245677788889999999999999999


Q ss_pred             HhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hcch-hhhHHHHHhhcc
Q 010291          195 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGV-QRRVALALAHLC  272 (513)
Q Consensus       195 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~-~~~v-~~~a~~aL~~l~  272 (513)
                      .-++ .++....+                                      +..+-..|.+- |-.. .......|+.|+
T Consensus       324 iPIA-~p~~l~~L--------------------------------------L~iLWd~L~~LDDLSASTgSVMdLLAkL~  364 (800)
T 3oc3_A          324 CHFP-ITDSLDLV--------------------------------------LEKCWKNIESEELISVSKTSNLSLLTKIY  364 (800)
T ss_dssp             TTSC-CSSTHHHH--------------------------------------HHHHHHHHHTCCSCCTTHHHHHHHHHHHH
T ss_pred             hhhc-chhhHHHH--------------------------------------HHHHHHHhhhhcccchhhHHHHHHHHHHH
Confidence            9998 33322222                                      22222233321 1000 111122333333


Q ss_pred             CCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          273 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       273 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                      ..+...  -.....+|.|..++.++-+.||..+..++..+.
T Consensus       365 s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          365 RENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             HHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             cCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            222111  112378999999999999999998888776553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.62  E-value=0.016  Score=51.16  Aligned_cols=85  Identities=20%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             HHHhhccCCHHHHHHHHHHH-----HHhhcc-CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            8 LVELLEFTDTKVQRAAAGAL-----RTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         8 Lv~lL~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      +..+++++++.+|..++..|     ..+..+ +...+......-..+.+..+++++++.||..++..   +.        
T Consensus        79 l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~---l~--------  147 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQR---IP--------  147 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHH---SC--------
T ss_pred             HHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHh---cC--------
Confidence            44455666666666665432     111211 22233333322223456667778889999988763   11        


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHH
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALL  110 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  110 (513)
                             .+.+..+++++++.|+..++..
T Consensus       148 -------~~~l~~l~~D~d~~VR~~aa~~  169 (244)
T 1lrv_A          148 -------PGRLFRFMRDEDRQVRKLVAKR  169 (244)
T ss_dssp             -------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred             -------HHHHHHHHcCCCHHHHHHHHHc
Confidence                   2234456667777777766653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.60  E-value=0.16  Score=55.21  Aligned_cols=131  Identities=11%  Similarity=0.072  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh---c--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCCh
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---S--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  131 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  131 (513)
                      .+...++.++.+++.++.......     ...++.++.++   .  +.++.++..++++++.++..-......+  ..++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence            466789999999999986543321     12333333332   2  3478999999999999884322111111  1346


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH--hcCChHHHHHHhcCC--CHHHHHHHHHHHHhccc
Q 010291          132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA--HNGGLVPLLKLLDSK--NGSLQHNAAFALYGLAD  199 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~  199 (513)
                      +.++..+ +  +.++..|++++.+++....  ..+.  -...+..+.+++..+  +...+..+..+++.++.
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            6677777 2  6789999999999996432  2222  134455566777763  46778888888888765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.58  E-value=0.38  Score=43.86  Aligned_cols=155  Identities=15%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHH----Hhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChH
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLI----LMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQ   90 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv----~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~   90 (513)
                      +.+.-++..++-.+. ++.....+.+.+.-..++    ..+. ...+..+..+++++.|+... +..++.+...  .+++
T Consensus       117 ~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~  194 (304)
T 3ebb_A          117 DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMS  194 (304)
T ss_dssp             TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHH
T ss_pred             HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHH
Confidence            344555555555444 444444444433323333    3333 23566799999999999876 5566665543  2455


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           91 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      .+...+.+.+..++..++..+.|++......+..=....++..+..+++. .|++....++-+|+++...+.....+.+.
T Consensus       195 ~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~  274 (304)
T 3ebb_A          195 HAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKS  274 (304)
T ss_dssp             HHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence            55555556788999999999999984211100000011134455555544 58899999999999999765444444443


Q ss_pred             CChHH
Q 010291          170 GGLVP  174 (513)
Q Consensus       170 ~~i~~  174 (513)
                      -.+..
T Consensus       275 l~~~~  279 (304)
T 3ebb_A          275 LGVDS  279 (304)
T ss_dssp             TTHHH
T ss_pred             cCHHH
Confidence            33333

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.55  E-value=0.055  Score=58.62  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .++..++.++++++.++.+-.+....-.-..+++.|++++..     +...++..++++++..+.--....+ .. ..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L-~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HH-HHHH
Confidence            578999999999999998644332322223467888888863     3345666778999888642111111 11 1245


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh------cCChH----HHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVR----PLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~----~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ..|+..+..+++.++..|++++.++|..   ++..+..      ...++    .+...+..-++.-+..+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            5566666667789999999999999943   3333431      11233    344444455777778888888888865


Q ss_pred             cc
Q 010291          160 MH  161 (513)
Q Consensus       160 ~~  161 (513)
                      .+
T Consensus       620 ~~  621 (1023)
T 4hat_C          620 ER  621 (1023)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=95.44  E-value=0.0044  Score=46.67  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=58.9

Q ss_pred             EEEEecCeeehhhHHHHhhcCHHHHHhccCCC----CCCCCCceecCCCCHHHHHHHHHHHhcCccccCHH-HHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA  422 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~  422 (513)
                      |.+.|||..|...+..|.....   .||...-    .....+.+-++ =++..|+.+|+|+-+|.+.++.+ .+..+.+-
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E   77 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEE   77 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence            6789999999999999975432   3443310    01123445554 49999999999999999887654 37889999


Q ss_pred             HHHhcHHHH
Q 010291          423 ADQYLLEGL  431 (513)
Q Consensus       423 A~~~~~~~l  431 (513)
                      |++|+++.+
T Consensus        78 a~fy~i~~l   86 (105)
T 1nn7_A           78 LAFFGLIPE   86 (105)
T ss_dssp             HHHHTCCSC
T ss_pred             HHHcCCCHH
Confidence            999999886

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=95.44  E-value=0.011  Score=46.87  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             CCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHH-HHH
Q 010291          343 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQ  417 (513)
Q Consensus       343 ~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~  417 (513)
                      ....-|.+.|||..|...+..|...-   ..||...    +.....+.+-++ =++..|+.+|+|+-+|.+.++.+ .+.
T Consensus        32 ~~~~~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~  107 (140)
T 2nz0_B           32 RQDELIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECIS  107 (140)
T ss_dssp             TCCCEEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC-SCHHHHHHHHHHHHHSSBCCCTTSCHH
T ss_pred             CCCCEEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe-CCcHHHHHHHHHHhcCCcCCCCCcCHH
Confidence            34456889999999999999998542   2344331    011223455554 49999999999999999987654 378


Q ss_pred             HHHHHHHHhcHHHH
Q 010291          418 DLLRAADQYLLEGL  431 (513)
Q Consensus       418 ~ll~~A~~~~~~~l  431 (513)
                      .+++-|+||+++.+
T Consensus       108 ~l~eEa~fy~i~~l  121 (140)
T 2nz0_B          108 AYDDELAFYGILPE  121 (140)
T ss_dssp             HHHHHHHHHTCCGG
T ss_pred             HHHHHHHHcCCChH
Confidence            89999999999886

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.37  E-value=0.66  Score=50.15  Aligned_cols=140  Identities=15%  Similarity=0.041  Sum_probs=83.8

Q ss_pred             cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHHHHhCCChHH
Q 010291           14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQP   91 (513)
Q Consensus        14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~   91 (513)
                      +.++.++..++.+|......-  ....+.+.+.++.+.++|.  +++++..|+.+|..+......  .+..+++.=.+..
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            367888899999999988632  2345556677888888886  489999999999999865432  2222222201111


Q ss_pred             HHHhhc--CCChHHHHHHHHHHHHhh------cCCc-----hhhHH--HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291           92 VIGLLS--SCCSESQREAALLLGQFA------ATDS-----DCKVH--IVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  156 (513)
Q Consensus        92 L~~ll~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~--~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  156 (513)
                      .+.-+.  ..|.+..+..+..+..++      ...+     +.+..  -.-.+.++.++.++..++.++...+...+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            222222  356666655444443332      1122     11111  11136889999999999888877776666655


Q ss_pred             h
Q 010291          157 A  157 (513)
Q Consensus       157 ~  157 (513)
                      .
T Consensus       360 l  360 (980)
T 3ibv_A          360 L  360 (980)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.25  E-value=0.38  Score=52.02  Aligned_cols=310  Identities=10%  Similarity=-0.001  Sum_probs=160.1

Q ss_pred             CChhHHHHhhccCCH-HHHHHHHHHHHHhhcc--C------c----h---hHHHHHhcC---CHHHHHHhhc----CCCH
Q 010291            3 GGIPPLVELLEFTDT-KVQRAAAGALRTLAFK--N------D----E---NKNQIVECN---ALPTLILMLR----SEDS   59 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~--~------~----~---~~~~i~~~g---~i~~Lv~lL~----~~~~   59 (513)
                      +.++.++++++++++ ......+++|..+...  +      .    +   .+..+.+..   +++....+|.    +.++
T Consensus       128 ~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~  207 (980)
T 3ibv_A          128 DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY  207 (980)
T ss_dssp             THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH
Confidence            346677777766544 3444556666643321  0      0    0   122333221   1333344443    3688


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc--hhhHHHHhcCChHHHHHH
Q 010291           60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEM  137 (513)
Q Consensus        60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~  137 (513)
                      .++..++.+|.....--+  -..+...+.++.+..++.+  ++++..|+.+|..+.....  +.+..++..=.+...+..
T Consensus       208 ~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~  283 (980)
T 3ibv_A          208 GTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK  283 (980)
T ss_dssp             HHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence            899999999999876322  2445556677888888864  7899999999999985543  222233322111222222


Q ss_pred             hC--CCCHHHHHHHHHHHHHHhhc------ccc------chh--hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-
Q 010291          138 LQ--SPDVQLREMSAFALGRLAQD------MHN------QAG--IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-  200 (513)
Q Consensus       138 l~--~~~~~~~~~a~~~L~~l~~~------~~~------~~~--~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-  200 (513)
                      +.  ..|.+..+..++.+..++..      .+.      +..  -.-.+.++.++..+.+++.++...++..+..+... 
T Consensus       284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~  363 (980)
T 3ibv_A          284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL  363 (980)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            22  45777766555555444311      110      000  11135677788888888888877666665554421 


Q ss_pred             ---c------chHHHHHh---hcCcccccc-----hhh----h----hhhhHHHHHHHHHHHHHHhhhhhHH----HHHH
Q 010291          201 ---E------DNVADFIR---VGGVQKLQD-----GEF----I----VQATKDCVAKTLKRLEEKIHGRVLN----HLLY  251 (513)
Q Consensus       201 ---~------~~~~~~~~---~g~i~~L~~-----~~~----~----~~~~~~~~~~~~~~~~~~~~~~~l~----~Lv~  251 (513)
                         +      .....+..   ...+..+.-     ...    .    ....+.+.....+.+..+....++.    .+..
T Consensus       364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~  443 (980)
T 3ibv_A          364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITS  443 (980)
T ss_dssp             HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence               1      11111110   001111100     000    0    0111223332233333333344445    4443


Q ss_pred             HHH-------HhhcchhhhHHHHHhhccCCCC--cceeeec----CCchHHHHhhhc-----CCCcchhhhHHHHHHHhh
Q 010291          252 LMR-------VAEKGVQRRVALALAHLCSPDD--QRTIFID----GGGLELLLGLLG-----STNPKQQLDGAVALFKLA  313 (513)
Q Consensus       252 lL~-------~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~----~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~  313 (513)
                      ++.       +.++...+.++.+|+.++.+-.  .....-+    ...++.+..++.     .++|.++..+++++.+.+
T Consensus       444 ~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys  523 (980)
T 3ibv_A          444 SLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA  523 (980)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence            332       3567789999999999876522  1111001    124455666655     578899999999999887


Q ss_pred             hcc
Q 010291          314 NKA  316 (513)
Q Consensus       314 ~~~  316 (513)
                      ..-
T Consensus       524 ~~~  526 (980)
T 3ibv_A          524 SFF  526 (980)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.88  E-value=0.32  Score=52.79  Aligned_cols=137  Identities=16%  Similarity=0.061  Sum_probs=89.8

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .+.++..+..++.+++.++.+-....     ...++.+++.+   .++++.++..++++++.++..-.... . .-..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~-~l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-V-MINSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-H-HHTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-H-HHHHHH
Confidence            45678889999999999997633211     12334444433   23578899999999999985322111 1 224688


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~  159 (513)
                      +.++..+.+  +.++..|++++.+++......-.. .-..+++.+..++.+  .+...+..+..+++.++..
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPP-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTT-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            888888854  889999999999999543221110 012334445555554  2568888889999998854

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.68  E-value=0.38  Score=41.55  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=91.0

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHhC
Q 010291            9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA   86 (513)
Q Consensus         9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~   86 (513)
                      .++.+++..++|..|+..|+.. ...         ...++.+.. +-.+++-.|++.+..++..++. ..++        
T Consensus        77 ~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------  138 (240)
T 3l9t_A           77 FLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------  138 (240)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred             HHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------
Confidence            3444677789999999988877 311         123455555 4446788999999999999985 3333        


Q ss_pred             CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           87 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        87 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      ..++.+.....+++..+|+.|...+.--+.. +...  .....+++.+-.+..+++..++....+.|..+++.++.
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence            1577888999999999999988776543322 1111  01112355555666678899999999999999976654

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=94.58  E-value=0.01  Score=44.06  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             EEEEecCeeehhhHHHHhhcCH-HHHHhccC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CccccCHH-HHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA  423 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~~A  423 (513)
                      |.+.|||..|...+..|...-. .+.+|++. ..-....+.+-+ |=++..|+.+|+|+-+ |++..+.+ .+..+.+-|
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea   81 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence            6789999999999999964321 22223321 011123345655 4589999999999998 88876544 367899999


Q ss_pred             HHhcHHHHH
Q 010291          424 DQYLLEGLK  432 (513)
Q Consensus       424 ~~~~~~~l~  432 (513)
                      ++|+++.+.
T Consensus        82 ~fy~i~~~~   90 (100)
T 1t1d_A           82 KFYELGENA   90 (100)
T ss_dssp             HHTTCCHHH
T ss_pred             HHcCCCHHH
Confidence            999998754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.48  E-value=0.15  Score=55.38  Aligned_cols=140  Identities=9%  Similarity=0.026  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCCh
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV  131 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  131 (513)
                      .+...++.++++++.++..-......-.-..+++.|+.++++     ....++..++|+++..+.--......  =..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHH
Confidence            468899999999999997644322222223467778887763     22345567789998887421111111  12356


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh------cCChHH----HHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291          132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH------NGGLVP----LLKLLDSKNGSLQHNAAFALYGLADN  200 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~----L~~ll~~~~~~~~~~a~~~L~~l~~~  200 (513)
                      +.|+..+.++++.++..|++++.++|...  +..+..      ...++.    +...+..-+..-...+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c--~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHH--HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            66777777888999999999999999743  222321      112333    34444445566667777888877763

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.41  E-value=0.51  Score=42.94  Aligned_cols=135  Identities=11%  Similarity=0.101  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-
Q 010291           19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-   97 (513)
Q Consensus        19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-   97 (513)
                      +..++...|.-+. ++......+++.+++..+....+-++.++.+..+..|...+.. ......- -...+|.++..++ 
T Consensus       259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t~-L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKTP-LENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTSC-CTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhcc-ccccchHHHHHhcc
Confidence            4455555555444 4677788899999999999999999999999999999888743 2211100 1246777777776 


Q ss_pred             CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-------CHHHHHHHHHHHHHH
Q 010291           98 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DVQLREMSAFALGRL  156 (513)
Q Consensus        98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-------~~~~~~~a~~~L~~l  156 (513)
                      +++.++.+.....|+|...+....++..+..|++..|-+.+...       +..-+..+|..++|.
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            57889999999999999988888888888899999988777431       334455566655554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.21  E-value=2.4  Score=36.99  Aligned_cols=126  Identities=14%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             hhHHHHHhcCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHH
Q 010291           36 ENKNQIVECNALPTLILMLRS----E-------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ  104 (513)
Q Consensus        36 ~~~~~i~~~g~i~~Lv~lL~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  104 (513)
                      .....+ ..+|+..|+..|..    +       +.+.+..++.||..+..........+-..+++..+...+.++.+.++
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r  113 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  113 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence            445555 56788888888762    1       34667789999999986544443334345689999999999999999


Q ss_pred             HHHHHHHHHhhcCCc-hh-hHHH----------HhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc
Q 010291          105 REAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus       105 ~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      ..+...|..+|..+. +. ...+          -+..-...+++.+++ .+.+.+..+...+..+....++
T Consensus       114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~d  184 (233)
T 2f31_A          114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  184 (233)
T ss_dssp             HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCC
Confidence            999999988885543 12 2211          223356667887774 4667777777777777766544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.06  E-value=0.54  Score=45.06  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291           56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  135 (513)
Q Consensus        56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  135 (513)
                      .+++..++.|+..+.....+.|+.++.     ++..++.++++++..+|..|...|-.+|.+  +...     .+...|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence            457889999999999999998987665     578899999999999999999999999966  3333     3466899


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291          136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG  196 (513)
Q Consensus       136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  196 (513)
                      ++|..+++.-...+-.+|..+...++.       +.+..+..-+..+++.+++.++..|..
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            999999887777777777777643322       334444544445677888887777653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.53  E-value=1.4  Score=47.60  Aligned_cols=134  Identities=12%  Similarity=0.043  Sum_probs=87.0

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh---cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCCh
Q 010291           55 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  131 (513)
Q Consensus        55 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  131 (513)
                      .+.+...++.++++++.++.......     ...++.++..+   .++++.++..++++++.++..-..... . -..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHH
Confidence            44577889999999999986543210     12233344333   235788999999999998743221111 2 24688


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH--hcCChHHHHHHhcCC--CHHHHHHHHHHHHhccc
Q 010291          132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA--HNGGLVPLLKLLDSK--NGSLQHNAAFALYGLAD  199 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~  199 (513)
                      +.++..+.+  +.++..|+.++.+++....  ..+.  -...+..+..++...  +...+..+..+++.++.
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            899988865  7899999999999996432  2221  122344455566643  46777888888888875

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.43  E-value=0.37  Score=43.96  Aligned_cols=123  Identities=12%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH--HHHHhCCChH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQ   90 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~   90 (513)
                      ..+..+..+++++.|+-. ++..+..+...  .+++.+...+.+++..++..++.++.|++......+  +..  ...+.
T Consensus       160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~  236 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLS  236 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHH
T ss_pred             CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHH
Confidence            356779999999999997 56666666542  344555555556789999999999999985321100  110  11334


Q ss_pred             HHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC
Q 010291           91 PVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS  140 (513)
Q Consensus        91 ~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~  140 (513)
                      .+..+++. .+.+....++.+|+++...+.+..+.....|+-..+-+..+.
T Consensus       237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            44444543 578999999999999997655444333333333333333333

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.01  E-value=6.1  Score=37.28  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=92.7

Q ss_pred             HHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291           23 AAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ   90 (513)
Q Consensus        23 a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   90 (513)
                      .+..|..-.+.+ ......+. .+|+..|+..|..           .+...+..+++||..+..........+-....+.
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~  165 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL  165 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHH
Confidence            344444333323 24445555 6678888888851           2347788899999999865444433444457899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCc-hh-hHHH----------HhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 010291           91 PVIGLLSSCCSESQREAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA  157 (513)
Q Consensus        91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~  157 (513)
                      .|...+.+..+.++..+...|..+|.... .. ...+          .+..-...++..++. .+.+.+..+...+..+.
T Consensus       166 ~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li  245 (383)
T 3eg5_B          166 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  245 (383)
T ss_dssp             HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886553 22 2221          233457778888887 57778777777777777


Q ss_pred             hcccc
Q 010291          158 QDMHN  162 (513)
Q Consensus       158 ~~~~~  162 (513)
                      ...++
T Consensus       246 ~~~~d  250 (383)
T 3eg5_B          246 TPAEE  250 (383)
T ss_dssp             TTCCC
T ss_pred             cCCCC
Confidence            65544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.82  E-value=1.4  Score=38.55  Aligned_cols=144  Identities=14%  Similarity=0.226  Sum_probs=87.7

Q ss_pred             CChhHHHHhhcc----C-------CHHHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 010291            3 GGIPPLVELLEF----T-------DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIG   70 (513)
Q Consensus         3 g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~   70 (513)
                      ||+..|+..|..    +       +...+..++.+|..+.. +......+. ..+.+..+...|.++++.++..++..|.
T Consensus        43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            455666666632    1       34678889999999986 444444444 4678899999999999999999999999


Q ss_pred             HhhcCCh-hH-HHHHH----------hCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchh------hHHHHhcCCh
Q 010291           71 NLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC------KVHIVQRGAV  131 (513)
Q Consensus        71 ~l~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i  131 (513)
                      .+|..+. +. ...+.          +..-...+++.+.. .+.+.+..+...+..+....++.      |..+...|..
T Consensus       122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  201 (233)
T 2f31_A          122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  201 (233)
T ss_dssp             HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            8886543 12 22222          22355667777764 44566666665555565443322      2233445555


Q ss_pred             HHHHHHhCCCCHHHHH
Q 010291          132 RPLIEMLQSPDVQLRE  147 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~  147 (513)
                      +.+-++-...++++..
T Consensus       202 ~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          202 QVLQELREIENEDMKV  217 (233)
T ss_dssp             HHHHHHHHCCCHHHHH
T ss_pred             HHHHHHhccCCHHHHH
Confidence            4444333334555443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.51  E-value=2.5  Score=39.99  Aligned_cols=142  Identities=14%  Similarity=0.214  Sum_probs=90.9

Q ss_pred             CChhHHHHhhcc-----------CCHHHHHHHHHHHHHhhccCchhHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 010291            3 GGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIG   70 (513)
Q Consensus         3 g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~   70 (513)
                      +|+..|+..|..           .+...+..+++||..+.. +......+ .....+..+...|.+.++.++..++..|.
T Consensus       109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            345666666631           234778889999999986 44444444 44678899999999999999999999999


Q ss_pred             HhhcCCh-hH-HHHH----------HhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchh------hHHHHhcCCh
Q 010291           71 NLVHSSP-NI-KKEV----------LAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC------KVHIVQRGAV  131 (513)
Q Consensus        71 ~l~~~~~-~~-~~~~----------~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i  131 (513)
                      .+|..+. .. ...+          .+..-...++..+.. .+.+.+..+...+..+....+..      +..+...|..
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  267 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  267 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence            9987653 21 2222          233457778888876 45677766666666666554432      2234455555


Q ss_pred             HHHHHHhCC-CCHHHH
Q 010291          132 RPLIEMLQS-PDVQLR  146 (513)
Q Consensus       132 ~~L~~~l~~-~~~~~~  146 (513)
                      +.+-. ++. .++.+.
T Consensus       268 ~il~~-lr~~~~~~L~  282 (383)
T 3eg5_B          268 QVLQE-LREIENEDMK  282 (383)
T ss_dssp             HHHHH-HTTSCCHHHH
T ss_pred             HHHHH-HhcCCChhHH
Confidence            54444 554 455544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.39  E-value=0.79  Score=50.21  Aligned_cols=141  Identities=10%  Similarity=0.030  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .++..+..|+.+++.++.+-......-.-..+++.++.+...     +.+.++..++++++.++..-....+.+  ..++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            578889999999999986432221111112244555554331     344556568899988774311111111  2356


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH----------hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV----------QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +.++..+.+.++.++..|++++.+++...   +..+.          -..++..+..++...+.+-......+++.+...
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~  619 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence            77777888888999999999999999542   22222          122344455556665555566777777777644


Q ss_pred             c
Q 010291          160 M  160 (513)
Q Consensus       160 ~  160 (513)
                      .
T Consensus       620 ~  620 (1049)
T 3m1i_C          620 E  620 (1049)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=91.86  E-value=2.3  Score=38.84  Aligned_cols=117  Identities=11%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-C
Q 010291           62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-S  140 (513)
Q Consensus        62 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~  140 (513)
                      ...+...|+-+..+ .+.-+-++..+|+..+...++-++.++.+..+..|...+....-+..  --...+|.++..+. .
T Consensus       260 vtR~FDLL~LLmHd-SnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h  336 (619)
T 3c2g_A          260 IIRTFDLLGLLLHD-SDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIH  336 (619)
T ss_dssp             HHHHHHHHHHHCCS-HHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcc-cccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccC
Confidence            34455555555544 66678899999999999999999999999999999888633222111  11346788887776 5


Q ss_pred             CCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcC
Q 010291          141 PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDS  181 (513)
Q Consensus       141 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~  181 (513)
                      ++.++.+...+.|.|+..+... ++..+..|++..|...+..
T Consensus       337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            6889999999999999987755 5555678888887777643

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=91.79  E-value=1.1  Score=49.10  Aligned_cols=139  Identities=9%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCCh
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV  131 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  131 (513)
                      .+...++.++++++.++.........-.-..+++.+..+...     +.+-++..++++++..+..-......+  ..++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            467889999999999986432221111112244445554332     233444468899987763211111111  2467


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH----------hcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291          132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA----------HNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  199 (513)
Q Consensus       132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  199 (513)
                      +.++..+.++++.++..|+.++.+++...  +..+.          -...+..+..++...+.+-......+++.++.
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            77888888889999999999999999743  22222          01223334455555454445555666666644

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.29  E-value=6.1  Score=37.38  Aligned_cols=149  Identities=15%  Similarity=0.220  Sum_probs=96.1

Q ss_pred             hhHHHHHhcCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHH
Q 010291           36 ENKNQIVECNALPTLILMLRS----E-------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ  104 (513)
Q Consensus        36 ~~~~~i~~~g~i~~Lv~lL~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  104 (513)
                      .....+. .+|+..|+..|..    .       +......++.||..+.....+....+...+++..+...+.+..+.++
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r  117 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  117 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence            4444553 5778888887751    1       34678889999999986644444444455789999999999999999


Q ss_pred             HHHHHHHHHhhcCCc-hh-hHHH----------HhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc-------ch
Q 010291          105 REAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN-------QA  164 (513)
Q Consensus       105 ~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~-------~~  164 (513)
                      ..+...|..+|.... +. ...+          .+..-...++..+.. .+.+.+..+...+..+....++       |.
T Consensus       118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~  197 (386)
T 2bnx_A          118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  197 (386)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            999988888886543 22 1111          233456668888874 5677777777777777766554       22


Q ss_pred             hhHhcCChHHHHHHhcC-CCHHH
Q 010291          165 GIAHNGGLVPLLKLLDS-KNGSL  186 (513)
Q Consensus       165 ~~~~~~~i~~L~~ll~~-~~~~~  186 (513)
                      .+... |+..++.-++. .++.+
T Consensus       198 Ef~~~-GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          198 ELMRL-GLHQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHT-THHHHHHHHTTCCCHHH
T ss_pred             HHHHC-ChHHHHHHHhccCChhH
Confidence            33334 45554555544 44443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.33  E-value=4.4  Score=38.37  Aligned_cols=145  Identities=14%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             CChhHHHHhhcc----C-------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010291            3 GGIPPLVELLEF----T-------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN   71 (513)
Q Consensus         3 g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~   71 (513)
                      +|+..|+..|..    +       +...+..++.||..+..........+...+++..+...|.++++.++..++..|..
T Consensus        47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~a  126 (386)
T 2bnx_A           47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  126 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            355566666531    1       35678889999999986333333444456788999999998999999999999998


Q ss_pred             hhcCCh-hH-HHHHH----------hCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCch------hhHHHHhcCChH
Q 010291           72 LVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD------CKVHIVQRGAVR  132 (513)
Q Consensus        72 l~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~  132 (513)
                      +|..+. +. ...+.          +..-...++..+.. .+.+.+..+...+..+....+.      .|..+...|..+
T Consensus       127 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~  206 (386)
T 2bnx_A          127 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ  206 (386)
T ss_dssp             HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH
T ss_pred             HHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH
Confidence            887543 22 22222          23355667777764 4556666666666666655442      233344555555


Q ss_pred             HHHHHhCC-CCHHHHHH
Q 010291          133 PLIEMLQS-PDVQLREM  148 (513)
Q Consensus       133 ~L~~~l~~-~~~~~~~~  148 (513)
                      .+ ..++. .++.+...
T Consensus       207 il-~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          207 VL-QELREIENEDMKVQ  222 (386)
T ss_dssp             HH-HHHTTCCCHHHHHH
T ss_pred             HH-HHHhccCChhHHHH
Confidence            54 44444 56555443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=90.32  E-value=23  Score=38.46  Aligned_cols=143  Identities=12%  Similarity=0.080  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      .++.....++++++.++..-.+..+.-.-..+++.|+++....     .+.++...+++++..+.--.... .+. ..++
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~-~~L-~~vl  568 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW-KFL-KTVV  568 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-HHH-HHHH
Confidence            3588899999999999853332222122223577777777643     12344445577777653211111 111 1246


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cC----ChHHHHH----HhCCCCHHHHHHHHHHHHHHhhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG----AVRPLIE----MLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~----~i~~L~~----~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      ..|++.+...++.++..|+.++..+|.....   .++.  .|    .++.++.    ....-.++-...-..+++.+...
T Consensus       569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~---~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~  645 (1073)
T 3gjx_A          569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRR---HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA  645 (1073)
T ss_dssp             HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG---GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH---HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            6677777778899999999999999954433   2322  12    2232322    22333566666667777777754


Q ss_pred             ccc
Q 010291          160 MHN  162 (513)
Q Consensus       160 ~~~  162 (513)
                      -+.
T Consensus       646 ~p~  648 (1073)
T 3gjx_A          646 QTD  648 (1073)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=89.84  E-value=7.3  Score=42.30  Aligned_cols=234  Identities=12%  Similarity=0.050  Sum_probs=134.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCC----ch
Q 010291           46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATD----SD  120 (513)
Q Consensus        46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~----~~  120 (513)
                      .+..++..+.+++++.|..|-..|..+-.+ ++         +...+..++.. .++.++..|+.+|.+.....    +.
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-p~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~   98 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-PD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR   98 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-SC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence            355666666677888888888888776543 33         34444444543 57899999999999887431    22


Q ss_pred             hhHHHHhcCChHHHHHHhCC-----CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 010291          121 CKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY  195 (513)
Q Consensus       121 ~~~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  195 (513)
                      .....+...++..+...-..     .++.++...+.++..++...-....   ...++.++..+.. ++......+.+|.
T Consensus        99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W---p~fi~dLv~~~~~-~~~~~~~~L~IL~  174 (1073)
T 3gjx_A           99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW---PTFISDIVGASRT-SESLCQNNMVILK  174 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC---TTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc---cHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            22233334455555554433     3567778888888888754322111   2456667776653 4455666777777


Q ss_pred             hcccCcc-h-HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhcc
Q 010291          196 GLADNED-N-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLC  272 (513)
Q Consensus       196 ~l~~~~~-~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~  272 (513)
                      .|+..-. . ...+..               ....-.   .+.+.. .-..++..+..+|.. .++++...++.++..+.
T Consensus       175 ~L~EEV~d~~~~~l~~---------------~r~~~l---k~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~  235 (1073)
T 3gjx_A          175 LLSEEVFDFSSGQITQ---------------VKAKHL---KDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFL  235 (1073)
T ss_dssp             HHHHHHTTSHHHHBCH---------------HHHHHH---HHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccccccH---------------HHHHHH---HHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            7765311 0 000000               000000   001111 122344444455544 45667777888998888


Q ss_pred             CCCCcceeeecCCchHHH-HhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          273 SPDDQRTIFIDGGGLELL-LGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       273 ~~~~~~~~l~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      ..-+.. .+.+.+.++.| ..++  ++++.+..|+.+|..+...
T Consensus       236 sWI~i~-~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          236 NWIPLG-YIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             TTSCTH-HHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             HhcCHH-HhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            765422 35566777777 4555  4678999999999998875

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.70  E-value=2.6  Score=37.79  Aligned_cols=136  Identities=12%  Similarity=0.021  Sum_probs=88.2

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHH-hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHH
Q 010291           58 DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPL  134 (513)
Q Consensus        58 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L  134 (513)
                      +.+-...|+..|..++.+-...-+.+- +...+..|+ +.....+.+++.|.++++...+.+|+....+.+  ..++..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            344567788888888876444433333 323344444 333456789999999999999999988776654  3445555


Q ss_pred             HHHhCC-------CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhcc
Q 010291          135 IEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLA  198 (513)
Q Consensus       135 ~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~  198 (513)
                      +.-|..       ....++..-+.+|..|..++.   .+ ...++..|.+++...  ++.++..++..+..+=
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            444322       244677788888888887652   12 234667777777666  8888888888777654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=88.48  E-value=30  Score=38.36  Aligned_cols=223  Identities=14%  Similarity=0.082  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh--cCCChHHHHHHHHHHHHhhcC-----CchhhHHHHhcC
Q 010291           57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAAT-----DSDCKVHIVQRG  129 (513)
Q Consensus        57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~  129 (513)
                      .++..|..|-..|.++-...          .+...+...|  .+.+..+|..|+..|.+....     +++.+. .+...
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~   93 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNS   93 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHH
T ss_pred             CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHH
Confidence            36778888888887764332          2333344433  345788999999999988632     233333 23333


Q ss_pred             ChHHHHHHhCC---CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291          130 AVRPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  206 (513)
Q Consensus       130 ~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  206 (513)
                      +++.+......   ..+.++...+.++..++...-....   ...++.|++++.+ ++.....++.+|..++.+-..   
T Consensus        94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~---  166 (1204)
T 3a6p_A           94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT---  166 (1204)
T ss_dssp             HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc---hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc---
Confidence            44444433211   4578888899999999865422111   2566778888876 555677788888887752100   


Q ss_pred             HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------------------hhcchhhhHHHH
Q 010291          207 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALA  267 (513)
Q Consensus       207 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-------------------~~~~v~~~a~~a  267 (513)
                         .+.   +.. ... ...+......        -..++..+..++..                   .+..+...++.+
T Consensus       167 ---~~~---~~~-~r~-~~l~~~l~~~--------~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~  230 (1204)
T 3a6p_A          167 ---FQT---LPP-QRR-RDIQQTLTQN--------MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNT  230 (1204)
T ss_dssp             ---SCC---SCH-HHH-HHHHHHHHHT--------HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred             ---ccc---hHH-HHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHH
Confidence               000   000 000 0000000000        11222333333322                   234567778888


Q ss_pred             HhhccCCCCcceeeecC--CchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          268 LAHLCSPDDQRTIFIDG--GGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       268 L~~l~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      +.+....-+... +.+.  ..++.+..++.  +++++..|+.+|..+....
T Consensus       231 l~~~l~Wi~~~~-i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          231 LAGYIDWVSMSH-ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             HHTTTTTSCHHH-HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccCHHH-HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence            887765433211 1122  25666666555  5788999999999998754

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.93  E-value=5.9  Score=35.54  Aligned_cols=146  Identities=12%  Similarity=0.129  Sum_probs=94.3

Q ss_pred             hHHHHhhccC------CHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 010291            6 PPLVELLEFT------DTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         6 ~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      ..+..+++++      +......|+..|..++. +-+....|+.  ...+..|+ +....++.+++.|.++++...++||
T Consensus        25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            3455667665      34456788889999986 5666666665  23344444 3345677899999999999999999


Q ss_pred             hHHHHHHhC--CChHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHH
Q 010291           78 NIKKEVLAA--GALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLR  146 (513)
Q Consensus        78 ~~~~~~~~~--g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~  146 (513)
                      ...+.+.+.  ..+..+..-|..       ....+...-+.+|..|.......     ....+..|.+++...  ++.++
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHH
Confidence            988877764  233333332322       23355566677888887543211     134667777777666  88888


Q ss_pred             HHHHHHHHHHhh
Q 010291          147 EMSAFALGRLAQ  158 (513)
Q Consensus       147 ~~a~~~L~~l~~  158 (513)
                      ..++..+..+-.
T Consensus       178 ~Kvl~li~d~f~  189 (315)
T 3qml_C          178 IKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            888877777653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=86.89  E-value=4.8  Score=43.83  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=99.5

Q ss_pred             HHHHhhcc----CCHHHHHHHHHHHHHhhcc----CchhHHHHHhcCCHHHHH----HhhcCCCHHHHHHHHHHHHHhhc
Q 010291            7 PLVELLEF----TDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLI----LMLRSEDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         7 ~Lv~lL~~----~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~g~i~~Lv----~lL~~~~~~v~~~a~~~L~~l~~   74 (513)
                      .+..++++    +++.++..++-+++.++..    ++...     ...++.+.    +.+...+.+-+..++.+|+|+..
T Consensus       395 ~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          395 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            34445544    3566677777777666541    11111     12234444    44456677888899999999964


Q ss_pred             CChhHHHHHHhCCChHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh--CCCCHHH
Q 010291           75 SSPNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQL  145 (513)
Q Consensus        75 ~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l--~~~~~~~  145 (513)
                      .  .         .++.|..++..       ....++..|+++|.++....|..        +-+.++++.  ...++++
T Consensus       470 p--~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~Ev  530 (1056)
T 1lsh_A          470 P--N---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSEL  530 (1056)
T ss_dssp             G--G---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHH
T ss_pred             h--h---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHH
Confidence            2  2         46667777642       23478889999999998544332        234567777  4568999


Q ss_pred             HHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCc
Q 010291          146 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNE  201 (513)
Q Consensus       146 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  201 (513)
                      |..|+..|..-.   +...      .+..+...+.. ++..+.......|.+++...
T Consensus       531 RiaA~~~Lm~t~---P~~~------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          531 RIRSCIVFFESK---PSVA------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHTC---CCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHC---cCHH------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            988888775421   2211      23344555544 56777777788888887744

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=86.39  E-value=0.65  Score=34.85  Aligned_cols=32  Identities=9%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 010291          443 ISLENVSSMYELSEAFHAISLRHTCILYIMEH  474 (513)
Q Consensus       443 ~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~  474 (513)
                      ++.+|+..++..|+.|+++.|.+.|.+|+.++
T Consensus        77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           77 LEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            67899999999999999999999999999876

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=85.72  E-value=7.8  Score=42.24  Aligned_cols=124  Identities=14%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291           10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus        10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.++..+.+.+..++++|+|+...           ..++.|.+++..       ....+|..|+++|.+++...+..   
T Consensus       447 ~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---  512 (1056)
T 1lsh_A          447 QSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---  512 (1056)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred             HHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---
Confidence            344566777788899999999852           356777777742       24578899999999998654432   


Q ss_pred             HHhCCChHHHHHhh--cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhc
Q 010291           83 VLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        83 ~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~  159 (513)
                           +-+.+.++.  ...++++|..|...|..-.   |..       ..+..+...+.. ++.++.......|.+++..
T Consensus       513 -----v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          513 -----VQEIVLPIFLNVAIKSELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             -----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence                 234466666  3467899988887775432   332       135566666665 6899999999999999976


Q ss_pred             ccc
Q 010291          160 MHN  162 (513)
Q Consensus       160 ~~~  162 (513)
                      ...
T Consensus       578 ~~P  580 (1056)
T 1lsh_A          578 SNP  580 (1056)
T ss_dssp             CSG
T ss_pred             CCc
Confidence            543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.05  E-value=28  Score=32.64  Aligned_cols=140  Identities=14%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             HHHHhhcc---CCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            7 PLVELLEF---TDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         7 ~Lv~lL~~---~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .++++|+.   .....+...+.-+..+..+ ++.     .-.++++.++++-.+++.++|+..+..|...+....+..  
T Consensus        26 ~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--   98 (386)
T 3o2t_A           26 RVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--   98 (386)
T ss_dssp             HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--
T ss_pred             HHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--
Confidence            45555542   1224677777777776542 232     224578888888888899999999999999886544432  


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhh--------cCCc-----hhhHHHHhcCChHHHHHHhCCCCHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFA--------ATDS-----DCKVHIVQRGAVRPLIEMLQSPDVQLREMS  149 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--------~~~~-----~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a  149 (513)
                         ..+++.|..++++.++.+.+.++.+..++-        ....     +.....+ ..+-..++.++.+.+..++..|
T Consensus        99 ---~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m-~~lK~~Il~~~ds~n~GVrl~a  174 (386)
T 3o2t_A           99 ---LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV-SAMAGDIILLLDSDNDGIRTHA  174 (386)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-HHHHHHHHHGGGCSSHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH-HHHHHHHHHHhccCCcchHHHH
Confidence               235778888898889999888887766654        1111     0111111 1223445666777888899888


Q ss_pred             HHHHHHHh
Q 010291          150 AFALGRLA  157 (513)
Q Consensus       150 ~~~L~~l~  157 (513)
                      +..+..+.
T Consensus       175 iKFle~VI  182 (386)
T 3o2t_A          175 IKFVEGLI  182 (386)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777765

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.32  E-value=1.1  Score=33.34  Aligned_cols=68  Identities=10%  Similarity=-0.008  Sum_probs=47.4

Q ss_pred             CccccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 010291          407 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAFHAISLRHTCILYIMEH  474 (513)
Q Consensus       407 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~------------~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~  474 (513)
                      +.-.++.+|...++.+|+.|+++.|.+.|.+|+.+++            +.+....++.- +.-+-..+.+.+++|+..+
T Consensus         4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s-dv~~E~~vf~av~~Wv~~d   82 (105)
T 2eqx_A            4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD-GVPCSQNPTEAIEAWINFN   82 (105)
T ss_dssp             CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT-CEETTSCHHHHHHHHHHTT
T ss_pred             hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Confidence            3445788999999999999999999999999998754            23333333332 2223345777788887644


Q ss_pred             H
Q 010291          475 F  475 (513)
Q Consensus       475 ~  475 (513)
                      .
T Consensus        83 ~   83 (105)
T 2eqx_A           83 K   83 (105)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=80.28  E-value=39  Score=31.68  Aligned_cols=105  Identities=13%  Similarity=0.119  Sum_probs=73.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      ..++.++++-.+++.++|...+..|...+....+...     .+++.|..+|+++++.+.+.++.+..++-   +..-+.
T Consensus        63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~  134 (386)
T 3o2t_A           63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQW  134 (386)
T ss_dssp             GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHH
Confidence            4567778877778899999999999988874444322     24678888888889999999888777763   222222


Q ss_pred             HHhCCC---------------hHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291           83 VLAAGA---------------LQPVIGLLSSCCSESQREAALLLGQFA  115 (513)
Q Consensus        83 ~~~~g~---------------i~~L~~ll~~~~~~~~~~a~~~L~~l~  115 (513)
                      ++..+.               -..++.++++.+..++..+...+..+.
T Consensus       135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            232222               234566677788888888888777755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-24
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	4e-22
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	2e-20
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-20
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-18
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-06
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-19
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	6e-14
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-11
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	9e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-04
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.003
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-04

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 6e-24
 Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 31/313 (9%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           IP  V+ L   D K Q   A  ++   F+++  K Q+ +   +  L+ +LRS +  +   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
           A G + NLV  S   K E      ++  + LL    +   ++    L    ++  + K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 125 IVQRG---------------AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 169
           ++                           +  D ++   +   L  L+     +  + + 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 229
            GL+  L        +       ++        N             +    +    +  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN----------LSYRLDAEVPTRYRQL 233

Query: 230 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 289
                    EK      ++        +K +       L    +             +  
Sbjct: 234 EYNARNAYTEKSSTGCFSNKS------DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 290 LLGLLGSTNPKQQ 302
            L L+G +     
Sbjct: 288 YLNLMGKSKKDAT 300

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 1e-16
 Identities = 51/355 (14%), Positives = 103/355 (29%), Gaps = 49/355 (13%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSA 60
            GGI  LV+LL   +  VQ+AAAGALR L F++  NK +    N +   + L+ R+ ++ 
Sbjct: 43  LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAE 102

Query: 61  IHYEAVGVIGNLVHSSPNIKKEV--------------LAAGALQPVIGLLSSCCSESQRE 106
           I  +  G++ NL  +    ++ +               +                E    
Sbjct: 103 IQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 107 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 166
           A   L   ++ D+  +      G +  L+  +Q+     R     ++      +HN +  
Sbjct: 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLHNLSYR 221

Query: 167 AHNGGLVPLLKLL-----------------DSKNGSLQHNAAFALYGLADNEDNVADFIR 209
                     +L                  +  +  + +N    L     N         
Sbjct: 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281

Query: 210 VGGVQKL---------------QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 254
              ++                   G          +  +       +  + L  +  L++
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

Query: 255 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 309
                V R  A  L+++          +       +  LL S          +  
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS 395

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA- 60
           E G+P +  LL+  ++ V R+ A  L  ++ ++      +      P +  +L S     
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNT 387

Query: 61  -----IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 111
                I   A   + NL+ S P + K+  ++  L  +I L  S  S    EAA LL
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 6e-11
 Identities = 19/172 (11%), Positives = 47/172 (27%), Gaps = 15/172 (8%)

Query: 1   MEGGIPPLVELLEFTDTKVQRA------AAGALRTLAFKNDENKNQIVECNALPTLILML 54
               I   + L+  +                        +  ++   ++   LP +  +L
Sbjct: 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL 340

Query: 55  RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS------ESQREAA 108
           +S +S +      ++ N+          V+       V  LL+S         +    A 
Sbjct: 341 QSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398

Query: 109 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQD 159
             +    A+             +  +I + +S    +  E +   L  +   
Sbjct: 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 243 GRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQ 301
           G  +   +  +   ++  Q   A  + H C   +  +      GG+  L+ LL S N   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 302 QLDGAVALFKLA 313
           Q   A AL  L 
Sbjct: 61  QQAAAGALRNLV 72

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 4e-22
 Identities = 22/100 (22%), Positives = 45/100 (45%)

Query: 337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 396
           ++  +   L+DV  +V   +F AH+  L+A S  F ++F    +   +     P I  E 
Sbjct: 17  NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG 76

Query: 397 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           F +++ F+YT  +++       ++  A    +E +   C 
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCR 116

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 396
           +Q     TL DV  +V+ + F+AHR  L  +S  F  +F    +        +  +  + 
Sbjct: 20  NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ-----HYTLDFLSPKT 74

Query: 397 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
           F+ ++ + YT ++    +   DLL AA+   +E L+  C 
Sbjct: 75  FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCL 114

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.9 bits (221), Expect = 7e-20
 Identities = 66/337 (19%), Positives = 124/337 (36%), Gaps = 19/337 (5%)

Query: 3   GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
           G IP  V  L  TD + +Q  +A AL  +A    E    +V+  A+P  I +L S  + I
Sbjct: 56  GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAA 116
             +AV  +GN+       +  V+  GA+ P++ LL     S+      R     L     
Sbjct: 116 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 175

Query: 117 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 176
             +           +  L+ +L   D ++   S +A+  L    + +  +    G+VP L
Sbjct: 176 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 235

Query: 177 KLLDSKNGSLQHNAAFALYG-----------LADNEDNVADFIRVGGVQKLQDGEFIVQA 225
             L           A    G              +   +A F  +    K    +     
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295

Query: 226 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDDQRTIFID 283
             +  A    ++++ ++  ++  L+ ++  A+   Q+  A A+ +  S    +Q    + 
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLS 320
            G +E L+ LL + + K       A+  +   A  L 
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.3 bits (204), Expect = 9e-18
 Identities = 61/336 (18%), Positives = 137/336 (40%), Gaps = 19/336 (5%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLI-LMLRSED 58
           +   +  +V+ +   + + Q  A  A R L  +  +   + I+    +P  +  + +++ 
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 59  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
           S I +E+   + N+   +    K V+  GA+   I LL+S  +    +A   LG  A   
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMS-----AFALGRLAQDMHNQAGIAHNGGLV 173
           S  +  +++ GA+ PL+ +L  PD+            + L  L ++ +    +     ++
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 174 PLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF----------I 222
           P L +LL   +  +  ++ +A+  L D  +   + +   GV                   
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250

Query: 223 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIF 281
           ++A  + V  T ++ ++ I    L     L+   +  +Q+     ++++     DQ    
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310

Query: 282 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317
           ++ G +  L+G+L   + K Q + A A+    +  T
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 346

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 36/185 (19%), Positives = 80/185 (43%), Gaps = 8/185 (4%)

Query: 18  KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 77
            +   A  A+  +    DE   ++++  AL     +L +  + I  EA   + N+     
Sbjct: 245 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 304

Query: 78  NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPLIE 136
           +  ++V+  G +  ++G+LS    ++Q+EAA  +  + +    +  V++V  G + PL+ 
Sbjct: 305 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 364

Query: 137 MLQSPDVQLREMSAFALGRLAQDMHNQAG-------IAHNGGLVPLLKLLDSKNGSLQHN 189
           +L + D ++ ++   A+  + Q              I   GGL  +  L   +N S+   
Sbjct: 365 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 424

Query: 190 AAFAL 194
           +   +
Sbjct: 425 SLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 9/227 (3%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L + +  
Sbjct: 186 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 245

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A   D
Sbjct: 246 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 305

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQAGIAHNGGLVPLLKL 178
               +V  G V  L+ +L   D + ++ +A+A+        +     + H G + PL+ L
Sbjct: 306 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 365

Query: 179 LDSKNGSLQHNAAFALYGLADNEDNVAD-------FIRVGGVQKLQD 218
           L +K+  +      A+  +    + + +           GG+ K++ 
Sbjct: 366 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 412

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 76  SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPL 134
           +     +     +++ ++  ++S   ESQ +A     +  + +    +  I++ G +   
Sbjct: 2   ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61

Query: 135 IEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAF 192
           +  L  +    ++  SA+AL  +A     Q     +GG +P    LL S +  +   A +
Sbjct: 62  VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121

Query: 193 ALYGLADNEDNVADFIR 209
           AL  +A +     D + 
Sbjct: 122 ALGNIAGDGSAFRDLVI 138

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAF------KNDENKNQIVECNALPTLILMLR 55
            G I PL+ LL   DTK+ +    A+  +        + ++    I EC  L  +  + R
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 56  SEDSAIHYEAVGVI 69
            E+ +++  ++ +I
Sbjct: 416 HENESVYKASLNLI 429

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (219), Expect = 2e-19
 Identities = 56/327 (17%), Positives = 126/327 (38%), Gaps = 14/327 (4%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLI-LMLRSEDSAIH 62
           +P + + L   D + Q +A    R +  +        +++   +P L+  M  ++   + 
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 63  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
            EA   + N+   +    K V+ A A+   I LL +   E + +A   LG  A   +D +
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197

Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 182
            +++Q  A+ P++ +  S    L   + + L  L +    Q   +     +P L  L   
Sbjct: 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 257

Query: 183 NGS-LQHNAAFALYGLADNEDNVADFIRVGGVQKLQ----------DGEFIVQATKDCVA 231
             +    +A +A+  L+D        +    + K                 ++A  + V 
Sbjct: 258 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317

Query: 232 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELL 290
               + +  I+  VL  L  L+   ++ +++     ++++ + + +Q    ID   +  L
Sbjct: 318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 377

Query: 291 LGLLGSTNPKQQLDGAVALFKLANKAT 317
           + LL     K + +   A+   ++   
Sbjct: 378 VKLLEVAEYKTKKEACWAISNASSGGL 404

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (174), Expect = 6e-14
 Identities = 47/234 (20%), Positives = 101/234 (43%), Gaps = 16/234 (6%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           +   +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  E + 
Sbjct: 244 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 303

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           +   A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A +++
Sbjct: 304 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 363

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLL 176
               ++    + PL+++L+  + + ++ + +A+   +     +  I       G + PL 
Sbjct: 364 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 423

Query: 177 KLLDSKNGSLQHNAAFALYGLAD-----------NEDNVADFI-RVGGVQKLQD 218
            LL+  +  +      AL  +             N +  ADFI + GG++K+ +
Sbjct: 424 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 4e-11
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 15/197 (7%)

Query: 13  EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 72
               T VQ  A  A+  +   ND     ++    LP L L+L S    I  EA   I N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

Query: 73  VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHIVQRG 129
              +    + V+ A  + P++ LL     ++++EA   +   ++      D   ++V +G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417

Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG------------IAHNGGLVPLLK 177
            ++PL ++L+  D ++ E++  AL  + +                   I   GG+  +  
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477

Query: 178 LLDSKNGSLQHNAAFAL 194
              ++N  +   A   +
Sbjct: 478 CQQNENDKIYEKAYKII 494

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTL-----------AFKNDENKNQIVECNALPTL 50
           +G I PL +LLE  D ++      AL  +               +EN + I +   +  +
Sbjct: 416 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 475

Query: 51  ILMLRSEDSAIHYEAVGVI 69
               ++E+  I+ +A  +I
Sbjct: 476 FNCQQNENDKIYEKAYKII 494

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 3e-18
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 3/198 (1%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSA 60
              IP L +LL   D  V   AA  +  L+ K       +     +  ++  ++ + D  
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
                 G + NL H        +  +G +  ++ +L S        A   L         
Sbjct: 76  TARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL-LKLL 179
            K+ +   G ++ ++ +L   +V+   ++   L  LA        I    G     + ++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 180 DSKNGSLQHNAAFALYGL 197
            +            +  +
Sbjct: 195 RTYTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 3e-17
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 21/197 (10%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
             G+P +V+LL          A   L         N   + E  A+P L+ +L       
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
                                             +     E   E         A D   
Sbjct: 414 QRRTSMGGTQQQ---------------------FVEGVRMEEIVEGCTGALHILARDVHN 452

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
           ++ I     +   +++L SP   ++ ++A  L  LAQD      I   G   PL +LL S
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 512

Query: 182 KNGSLQHNAAFALYGLA 198
           +N  +   AA  L+ ++
Sbjct: 513 RNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (185), Expect = 3e-15
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 1/169 (0%)

Query: 45  NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 104
            A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++  + +      
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 105 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQ 163
                      +   +  + I + G +  L++ML SP   +   +   L  L       +
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 212
             +   GGL  ++ LL+  N          L  LA         I   G
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 4e-15
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 84  LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-D 142
           LA  A+  +  LL+        +AA+++ Q +  ++     +     V  ++  +Q+  D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 143 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 202
           V+    +A  L  L+        I  +GG+  L+K+L S   S+   A   L+ L  +++
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 203 NVADFIRVGGV 213
                +R+ G 
Sbjct: 134 GAKMAVRLAGG 144

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 8e-15
 Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 3/204 (1%)

Query: 2   EGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
              +  +V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   +
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 61  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
           + + A+  + NL+      K  V  AG LQ ++ LL+    +        L   A  + +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLL 179
            K+ I+  G  + L+ ++++   +    +   + ++ +    N+  I   GG+  L   L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 180 DSKNGSLQHNAAFALYGLADNEDN 203
              +  L  N  + L  L+D    
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATK 260

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 6e-13
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 27/245 (11%)

Query: 1   MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
           MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  +      
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 61  IHYE-----AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115
                    A+  + +    +   +  V     L  V+ LL         +A + L +  
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 116 ATDSDCKVHIVQRGAVRPLIEMLQSPDV----------------------QLREMSAFAL 153
           A        + ++GA+  L+++L                           ++ E    AL
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443

Query: 154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 213
             LA+D+HN+  I     +   ++LL S   ++Q  AA  L  LA +++        G  
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503

Query: 214 QKLQD 218
             L +
Sbjct: 504 APLTE 508

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 126 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL--KLLDSKN 183
           +   A+  L ++L   D  +   +A  + +L++   ++  I  +  +V  +   + ++ +
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 184 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 216
                  A  L+ L+ + + +    + GG+  L
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 106

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 5e-10
 Identities = 48/326 (14%), Positives = 107/326 (32%), Gaps = 14/326 (4%)

Query: 2   EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
            GGIP LV++L      V   A   L  L    +  K  +     L  ++ +L   +   
Sbjct: 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 159

Query: 62  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
                  +  L + +   K  +LA+G  Q ++ ++ +   E        + +  +  S  
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
           K  IV+ G ++ L   L  P  +L +   + L  L+     Q G+    G +  L   D 
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279

Query: 182 KNGSLQHNAAFALYGLADNEDNVAD----------FIRVGGVQKLQDGEFIVQATKDCVA 231
            N         +     + ++ +               +    +    E  + A +   +
Sbjct: 280 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339

Query: 232 KT----LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 287
           +     + +   ++H  +   +  L   +   + +     + +L           + G +
Sbjct: 340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 399

Query: 288 ELLLGLLGSTNPKQQLDGAVALFKLA 313
             L+ LL   +   Q   ++   +  
Sbjct: 400 PRLVQLLVRAHQDTQRRTSMGGTQQQ 425

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 34/153 (22%)

Query: 159 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 218
           +  + A +A    +  L KLL+ ++  + + AA  ++ L+  E +    +R   +     
Sbjct: 7   NYQDDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM----- 60

Query: 219 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQ 277
                                      ++ ++  M+        R  A  L +L    + 
Sbjct: 61  ---------------------------VSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93

Query: 278 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 310
                  GG+  L+ +LGS            L 
Sbjct: 94  LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 13/205 (6%)

Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KLLDS 181
           + ++ +       E  Q+ D Q RE +   L  L ++M N A      G+  L+ + L++
Sbjct: 11  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 70

Query: 182 KNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKL-------QDGEFIVQATKDC---V 230
               L+  AA  +   + N   + +  + +G ++KL             V+A       V
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 231 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLEL 289
            +    L + +     + L+  M+   + ++ + A  L +L     + +      G ++ 
Sbjct: 131 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 190

Query: 290 LLGLLGSTNPKQQLDGAVALFKLAN 314
           L+ L+ + +         AL  L  
Sbjct: 191 LVALVRTEHSPFHEHVLGALCSLVT 215

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 40  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSS 98
           +++     PT     ++ D      A+ ++ +L  +  N   +      +  ++G  L +
Sbjct: 12  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEA 70

Query: 99  CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 157
             +  +  AA L+G  +   +  +  ++  GA+R L+ +L       +R  + FA+  L 
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 158 Q 158
           +
Sbjct: 131 R 131

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 26  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV-----HSSPNIK 80
            +   A + ++  +Q     AL  L  +  + D+A  +  +  +  LV       +  ++
Sbjct: 17  PMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLR 76

Query: 81  KEVLA------------------AGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDC 121
                                   GAL+ ++ LL     ++ + +A   +          
Sbjct: 77  WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 136

Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLLD 180
            +  ++      L+  +Q    +L+  SAF L  L      ++  +   G +  L+ L+ 
Sbjct: 137 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR 196

Query: 181 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 228
           +++     +   AL  L  +        R   +   +      Q  + 
Sbjct: 197 TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 244

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 17/202 (8%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
           +  +++LLE  + +VQ  A   L  L  K  E + +      + TL   + S+   +   
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE----TIVDTLCTNMLSDKEQLRDI 102

Query: 65  AVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSES-----QREAALLLGQFAATD 118
           +   +  ++   P       LAA   + + G L+S  ++      Q EA  ++    +  
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-- 176
               +       +  L+  L SP + +R+ +  ALG L        G      L+  L  
Sbjct: 163 GG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC----GNIVFVDLIEHLLS 217

Query: 177 KLLDSKNGSLQHNAAFALYGLA 198
           +L  + + S        +  ++
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAIS 239

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 19/205 (9%)

Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQH 188
            +  L+E + S D   R M+   L    Q    +        +V  +LKLL+ KNG +Q+
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 189 NAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 247
            A   L  L    ++   + I       +   +   +  +D  +  LK +  ++      
Sbjct: 64  LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDK---EQLRDISSIGLKTVIGELPPASSG 120

Query: 248 HLL--------------YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 293
             L               + +  +  VQ      +A + S      +      L  LL  
Sbjct: 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 294 LGSTNPKQQLDGAVALFKLANKATT 318
           L S     +    +AL  L      
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMSCGN 205

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 11  LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 70
                D ++  A   +      +  E+ ++     AL  L+ +L    +           
Sbjct: 282 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341

Query: 71  NLVHSSPNIKK---EVLAAGALQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKV 123
           N   ++               +  V+  +           R+AA++  G         ++
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401

Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
             +   A+  LIE+++ P V +R+ +A+ +GR+ + +   A   ++  L PLL+ L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--INDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 24/266 (9%)

Query: 2   EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 58
           E G+  +++LL+ +   DT +QR     L  L              N L  ++  L+SED
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQL-------NQYPDFNNYLIFVLTKLKSED 59

Query: 59  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
                 +  ++ N V +        +        +  +       +    +L+   A+  
Sbjct: 60  EPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG 119

Query: 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-----HNQAGIAHNGGLV 173
                       +  L  +L S D    E +  AL ++ +D       +      N  + 
Sbjct: 120 ELQNWP----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 175

Query: 174 PLLKLLDSKNGSLQHNAA-----FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 228
             L+     +  ++ +A      F +        ++  F          +   + +    
Sbjct: 176 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCR 235

Query: 229 CVAKTLKRLEEKIHGRVLNHLLYLMR 254
            +   L+   +++   + N + Y+++
Sbjct: 236 ALVMLLEVRMDRLLPHMHNIVEYMLQ 261

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 32/166 (19%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 5   IPPLVELLEFTDTKVQRAAAGAL---RTLAFKNDENKNQIVECN---ALPTLILMLRSED 58
           +  L  L+  +D  V+RA A  L   +  A   DE++   +       L  L  M    D
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRD 127

Query: 59  SAIHYEAVG------VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 112
             +    V       +   +      ++K V      + +  +      E +R  A  L 
Sbjct: 128 YLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR 187

Query: 113 Q----FAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
                    D D  V       A    +  L  PD ++R   A  L
Sbjct: 188 GDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 233

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 19/164 (11%)

Query: 104 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163
           +R+A+   G +    + CK     +     L  +L   +   R  SA  L          
Sbjct: 3   KRKASKEYGLY----NQCK-----KLNDDELFRLLDDHNSLKRISSARVLQL-------- 45

Query: 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 223
                   +   ++    KN   +   AF L  +   +    +   +     L D    V
Sbjct: 46  --RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACV 103

Query: 224 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 267
           +AT         +       +++             V+R  A A
Sbjct: 104 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFA 147

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 21/148 (14%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
              L  LL+  ++  + ++A  L+    +           +A+   I     ++      
Sbjct: 21  DDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDI 69

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
              ++G +                +      L+   +  +  A     Q    +      
Sbjct: 70  GAFILGQIKICKKCEDNVFNILNNM-----ALNDKSACVRATAIESTAQRCKKNP----- 119

Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFA 152
           I     V             +R  +AFA
Sbjct: 120 IYSPKIVEQSQITAFDKSTNVRRATAFA 147

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 5   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
               +  L      ++ AA   L+ L  K  +          +P ++ M    +      
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMT 499

Query: 65  AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
            +  I  L        +++     L  V+ +     +  +   A  L +      +  + 
Sbjct: 500 TLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 556

Query: 125 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 157
                 V+P++E L    DV ++  +  AL  L+
Sbjct: 557 ----SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.9
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.28
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.19
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.18
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.15
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.13
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.86
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.79
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.74
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.61
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.58
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.47
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.47
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.26
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.22
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.21
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.2
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.05
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	98.04
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.86
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	97.37
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.0
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.93
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	96.62
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.52
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	96.05
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	95.09
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.5
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.95
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.94
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	93.29
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.27
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	89.31
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	87.13
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.53

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-26  Score=232.30  Aligned_cols=282  Identities=20%  Similarity=0.264  Sum_probs=252.2

Q ss_pred             CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      +|++|.|+++|++ .++.++..|+++|.+++.+++.....+.+.|+++.++.+|.+++.+++..|+++|++++.+++..+
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            6899999999975 468899999999999999888888999999999999999999999999999999999999989999


Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  160 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  160 (513)
                      ..+.+.|+++.++.++.+.+.+++..++|+|.+++.............++++.++.++.+++++++..++++|.+++.+.
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999776555555566789999999999999999999999999999766


Q ss_pred             cc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHH
Q 010291          161 HN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE  239 (513)
Q Consensus       161 ~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~  239 (513)
                      .. ...+.+.|+++.++.++.+++..++..++.++++++.+.+.....                                
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~--------------------------------  325 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV--------------------------------  325 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH--------------------------------
T ss_pred             chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            54 466788999999999999999999999999999999765543222                                


Q ss_pred             HhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          240 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       240 ~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      +.+.++++.+..+++++++.++..++|+|+|++.+.. ....+.+.|+++.+++++.+.+++++..++++|.+++.+
T Consensus       326 ~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         326 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence            3356688999999999999999999999999987644 566788999999999999999999999999999999875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.1e-26  Score=223.05  Aligned_cols=314  Identities=19%  Similarity=0.240  Sum_probs=264.2

Q ss_pred             CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291            2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK   80 (513)
Q Consensus         2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   80 (513)
                      .|++|.|+++|++ +++++|..|+++|.+++.++++.+..+.+.|+++.++++|.++++++++.|+++|++++.+++..+
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            5899999999965 568899999999999998888899999999999999999999999999999999999999989999


Q ss_pred             HHHHhCCChHHHHHhhcCCCh-----HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCS-----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      ..+.+.|+++.++.++...+.     .....+++++.+++.............++++.+..++.+++++++..++++|.+
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~  214 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  214 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence            999999999999999986542     456778899999997766655555667889999999999999999999999999


Q ss_pred             Hhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchhhhhhh-hHHHHHH
Q 010291          156 LAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQA-TKDCVAK  232 (513)
Q Consensus       156 l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~  232 (513)
                      ++.++.. ...+...|+++.+++++.+++..++..++.+|.+++.+. .....+.+.|+++.+.....+... ....+..
T Consensus       215 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~  294 (434)
T d1q1sc_         215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  294 (434)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred             cchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence            9977654 445667889999999999999999999999999998754 456677789998887664442221 2233333


Q ss_pred             HHH--------HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhhcCCCcchh
Q 010291          233 TLK--------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       233 ~~~--------~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                      ++.        ....+.+.++++.++.++.+++++++..|++++++++...+  ....+.+.|+++.|++++.+++++++
T Consensus       295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~  374 (434)
T d1q1sc_         295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII  374 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHH
T ss_pred             HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            332        33445678899999999999999999999999999986433  45568899999999999999999999


Q ss_pred             hhHHHHHHHhhhc
Q 010291          303 LDGAVALFKLANK  315 (513)
Q Consensus       303 ~~a~~~L~~l~~~  315 (513)
                      ..+++++.++...
T Consensus       375 ~~~l~~l~~ll~~  387 (434)
T d1q1sc_         375 QVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-26  Score=229.60  Aligned_cols=314  Identities=18%  Similarity=0.218  Sum_probs=263.4

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .+++|.|+++|++++..++..|+.++.+++. ++..+..+.. .|+++.++.+|+. .++++++.|+.+|++++.+ +..
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~-~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~   93 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            4679999999999999999999999999997 5566666655 4679999999984 6789999999999999965 777


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+++.|+++.|+.+|.+++++++..|+++|.|++.+++..+..+.+.|+++.|+.++++++++++..++++|.+++..
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            88999999999999999999999999999999999988888888899999999999999999999999999999999965


Q ss_pred             c-ccchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHH
Q 010291          160 M-HNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKR  236 (513)
Q Consensus       160 ~-~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~  236 (513)
                      + +.+..+...|+++.++.++.+.+ ..++..+++++.+++.+++++..+.+.|+++.|........ ....-+..++.+
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~  253 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHh
Confidence            4 44667788899999999996554 67889999999999999999999999999998876443211 112222333333


Q ss_pred             HHHH-----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhc--CCCcchhhhHHHH
Q 010291          237 LEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG--STNPKQQLDGAVA  308 (513)
Q Consensus       237 ~~~~-----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~~  308 (513)
                      +...     ...++++.|+.++++++..++..++++|++++.++ +.+..+.+.++++.|+.++.  +++++++..++.+
T Consensus       254 ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            3322     23578999999999999999999999999998754 46677889999999999885  4667889999999


Q ss_pred             HHHhhhccc
Q 010291          309 LFKLANKAT  317 (513)
Q Consensus       309 L~~l~~~~~  317 (513)
                      |.+++....
T Consensus       334 L~~l~~~~~  342 (529)
T d1jdha_         334 LRHLTSRHQ  342 (529)
T ss_dssp             HHHHTSSST
T ss_pred             hhcccchhh
Confidence            999986543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.6e-25  Score=217.98  Aligned_cols=315  Identities=19%  Similarity=0.284  Sum_probs=260.5

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .+.++.+++.|++++++.+..|+.+++++..... .....+++.|++|.|+++|++ ++++++..|+++|++++.++++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            5789999999999999999999999999865322 235678899999999999974 56889999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC-----HHHHHHHHHHHH
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-----VQLREMSAFALG  154 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~  154 (513)
                      +..+.+.|+++.++.++.+++.++++.|+++|.|++..++..+..+.+.|+++.++.++..++     ......+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999888888888999999999999998753     345677889999


Q ss_pred             HHhhccccch-hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HHHHhhcCcccccchhhhhh-hhHHHHH
Q 010291          155 RLAQDMHNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQ-ATKDCVA  231 (513)
Q Consensus       155 ~l~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~-~~~~~~~  231 (513)
                      +++.+..... .....+.++.+..++.+++++++..+++++.+++.++... ..+...|+++.|++...... .....+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            9997665433 3345678888999999999999999999999999866544 44557788888876443221 1111112


Q ss_pred             HHH--------HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchh
Q 010291          232 KTL--------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQ  302 (513)
Q Consensus       232 ~~~--------~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~  302 (513)
                      .++        .....+.+.++++.++.++++++++++..++++|.+++.... ....+.+.|+++.+++++.+++++++
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            222        233455678899999999999999999999999999987544 56677889999999999999999999


Q ss_pred             hhHHHHHHHhhhcc
Q 010291          303 LDGAVALFKLANKA  316 (513)
Q Consensus       303 ~~a~~~L~~l~~~~  316 (513)
                      ..|++++.+++.+.
T Consensus       332 ~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         332 KEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998763

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.1e-25  Score=221.70  Aligned_cols=312  Identities=20%  Similarity=0.200  Sum_probs=255.2

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+.+|++++++++..++++|.+++..++..+.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            48899999999999999999999999999998888999999999999999999999999999999999999987777776


Q ss_pred             HHHhCCChHHHHHhhc----------------------------------------------------------------
Q 010291           82 EVLAAGALQPVIGLLS----------------------------------------------------------------   97 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~----------------------------------------------------------------   97 (513)
                      .+.+.|+++.++.++.                                                                
T Consensus       180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            6666666666555553                                                                


Q ss_pred             -----------------CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhh
Q 010291           98 -----------------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        98 -----------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~  158 (513)
                                       +++.+++..++++|++++..++..+..+.+.|+++.++..+.  ++.+++++.++++|++++.
T Consensus       260 ~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence                             234456666777788887777777777888899999998884  4678899999999999996


Q ss_pred             cccc----chhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhh--------
Q 010291          159 DMHN----QAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA--------  225 (513)
Q Consensus       159 ~~~~----~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~--------  225 (513)
                      ....    +..+...++++.++.++..++ ..++..+++++++++.+++++..+.+.|+++.|++.......        
T Consensus       340 ~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~  419 (529)
T d1jdha_         340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  419 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             hhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHh
Confidence            6543    445667899999999998765 567888999999999999999999999999887764332110        


Q ss_pred             ---------------hHHHHHHHHHH-------HHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec
Q 010291          226 ---------------TKDCVAKTLKR-------LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  283 (513)
Q Consensus       226 ---------------~~~~~~~~~~~-------~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  283 (513)
                                     ....+..++..       .....+.++++.|+.+|.++++.++..++++|.+|+.+++.+..+.+
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~  499 (529)
T d1jdha_         420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA  499 (529)
T ss_dssp             ------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             hhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence                           11111222211       23334677899999999999999999999999999998888889999


Q ss_pred             CCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          284 GGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                      .|+++.|++++.++++.++..|+.+|.+++
T Consensus       500 ~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         500 EGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             TTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.2e-24  Score=215.36  Aligned_cols=282  Identities=17%  Similarity=0.227  Sum_probs=247.7

Q ss_pred             CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      .|+++.++.+|++++.+++..|+++|++++..++..+..+.+.|+++.++.++.+.++.++..++++|.+++........
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            58999999999999999999999999999988889999999999999999999999999999999999999976555445


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      .....++++.++.++.+.+++++..++|+|.+++..+++....+.+.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            55567899999999999999999999999999998888878888999999999999999999999999999999997665


Q ss_pred             c-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          162 N-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       162 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                      . ...+.+.|+++.+..++.++++.++..++++|+|++.+.....                                ..+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~--------------------------------~~i  368 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI--------------------------------QAV  368 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH--------------------------------HHH
T ss_pred             HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHH--------------------------------HHH
Confidence            5 4456678899999999999999999999999999987554322                                223


Q ss_pred             hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC----cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          241 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~----~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                      .+.++++.++.++.+++.+++..|+++|.|++....    ....+.+.|+++.|+.++.+.++++...+..+|.++...
T Consensus       369 ~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~  447 (503)
T d1wa5b_         369 IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  447 (503)
T ss_dssp             HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            456688999999999999999999999999975432    334677899999999999999999999999999888753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-23  Score=203.01  Aligned_cols=283  Identities=20%  Similarity=0.211  Sum_probs=227.5

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      +.||.|+++|+++++++|..|+++|++++.++++++..+.+.|+|+.|+++|+++++++|..|+++|++|+.+++.++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            46899999999999999999999999999989999999999999999999999999999999999999999988999999


Q ss_pred             HHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchh----------------------------------------
Q 010291           83 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC----------------------------------------  121 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~----------------------------------------  121 (513)
                      +.+.|+++.++.++.. .+++++..++++|.+++......                                        
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999998865 56788888888888887533210                                        


Q ss_pred             ---------------hH-HHHhcCChHHHHHHhC----------------------------------------------
Q 010291          122 ---------------KV-HIVQRGAVRPLIEMLQ----------------------------------------------  139 (513)
Q Consensus       122 ---------------~~-~~~~~~~i~~L~~~l~----------------------------------------------  139 (513)
                                     +. .....|.++.++.+++                                              
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                           00 0112344555554431                                              


Q ss_pred             -----------------------------------------------------CCCHHHHHHHHHHHHHHhhcccc----
Q 010291          140 -----------------------------------------------------SPDVQLREMSAFALGRLAQDMHN----  162 (513)
Q Consensus       140 -----------------------------------------------------~~~~~~~~~a~~~L~~l~~~~~~----  162 (513)
                                                                           ..++.++..+.+++.+++.....    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                 12345566777788887754432    


Q ss_pred             --chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          163 --QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       163 --~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                        +..+.+.|+++.|++++.++++.++..+++++++++.+++++..+.+                               
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-------------------------------  370 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-------------------------------  370 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-------------------------------
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-------------------------------
Confidence              34455678999999999999999999999999999998877655432                               


Q ss_pred             hhhhhHHHHHHHHHH------hhcchhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcC-CCcchhhhHHHHHHHh
Q 010291          241 IHGRVLNHLLYLMRV------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKL  312 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~------~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l  312 (513)
                         +.++.++.+|..      .+.+++..++.+|.+++. +++.++.+.+.|+++.|++++.+ +++.+++.|+.+|.+|
T Consensus       371 ---~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L  447 (457)
T d1xm9a1         371 ---QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM  447 (457)
T ss_dssp             ---HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             ---hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence               346677777754      345789999999999975 45678889999999999999987 5678899999999999


Q ss_pred             hhccccc
Q 010291          313 ANKATTL  319 (513)
Q Consensus       313 ~~~~~~~  319 (513)
                      +.+.+-+
T Consensus       448 ~~~~~~~  454 (457)
T d1xm9a1         448 WSSKELQ  454 (457)
T ss_dssp             SSSTTCS
T ss_pred             HcCHhhH
Confidence            8776544

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.6e-24  Score=168.02  Aligned_cols=105  Identities=22%  Similarity=0.347  Sum_probs=100.2

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      +.++.++.++|+++.++|+.|++||.||+++|+||++||.+++.++....+.++++++++|+.+++|+|||++.++.+++
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v   96 (122)
T d1r29a_          17 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNI   96 (122)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhhH
Confidence            45778899999999999999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~  441 (513)
                      .+++.+|++|++++|++.|+++|..
T Consensus        97 ~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          97 MAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            9999999999999999999999975

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=163.04  Aligned_cols=100  Identities=25%  Similarity=0.426  Sum_probs=93.9

Q ss_pred             hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291          337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA  416 (513)
Q Consensus       337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  416 (513)
                      +.++.++.++|+++.++|+.|++||.||+++|+||++||.++     ..++.++++++++|+.+++|+|||++.++.+++
T Consensus        20 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~-----~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v   94 (121)
T d1buoa_          20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL   94 (121)
T ss_dssp             HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred             HHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc-----cceeecCCCCHHHHHHHHHheEccccCCcHHHH
Confidence            467788999999999999999999999999999999999764     347999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHh
Q 010291          417 QDLLRAADQYLLEGLKRLCEYTIAQ  441 (513)
Q Consensus       417 ~~ll~~A~~~~~~~l~~~c~~~l~~  441 (513)
                      .+++.+|++|++++|++.|+++|..
T Consensus        95 ~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          95 DDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999964

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.6e-20  Score=165.81  Aligned_cols=188  Identities=19%  Similarity=0.289  Sum_probs=172.1

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291           15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI   93 (513)
Q Consensus        15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   93 (513)
                      .+.+.+..|+..|.+++. +.+++..+...|+++.++. ++.++++++|..|+++|++++.+++..+..+.+.|+++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            456789999999999997 7889999999999999885 77789999999999999999999999999999999999999


Q ss_pred             HhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccchhhHhcCC
Q 010291           94 GLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD-MHNQAGIAHNGG  171 (513)
Q Consensus        94 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~  171 (513)
                      .++.+ .++.++..++++|.+++.+++..+..+...|+++.|+++++++++.++..++++|.+++.. +..+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            99964 6788999999999999999999899999999999999999999999999999999999865 456778888999


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          172 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       172 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      ++.|+.++.++++.++..++++|++|+.+...
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999975544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-19  Score=176.86  Aligned_cols=274  Identities=17%  Similarity=0.173  Sum_probs=211.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291           45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  124 (513)
Q Consensus        45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  124 (513)
                      +.||.|+++|++++++++..|+++|+++|.++++.|..+.+.|+++.|+++|++++++++..|+++|.+++..+++.+..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            36899999999999999999999999999998999999999999999999999999999999999999999888999999


Q ss_pred             HHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh---------------cCCCHHHHH
Q 010291          125 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---------------DSKNGSLQH  188 (513)
Q Consensus       125 ~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---------------~~~~~~~~~  188 (513)
                      +.+.|+++.++.++.+ .+++++..++++|.+++.....+......+....+..++               ...+..++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999875 588999999999999998877766665544333222221               344688999


Q ss_pred             HHHHHHHhcccCcchHHHHHh-hcCcccccchhhhhh--------hhHHHH--H--------------------------
Q 010291          189 NAAFALYGLADNEDNVADFIR-VGGVQKLQDGEFIVQ--------ATKDCV--A--------------------------  231 (513)
Q Consensus       189 ~a~~~L~~l~~~~~~~~~~~~-~g~i~~L~~~~~~~~--------~~~~~~--~--------------------------  231 (513)
                      .+++++.+++.+.++...... .|+++.++.......        ....+.  .                          
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            999999999988777776654 355555543221100        000000  0                          


Q ss_pred             ------HHHHH-----------------------HHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC-----
Q 010291          232 ------KTLKR-----------------------LEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-----  276 (513)
Q Consensus       232 ------~~~~~-----------------------~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~-----  276 (513)
                            .....                       .......++++.++.++.+ .++.++..+.+++.+++....     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                  00000                       0111334577888888877 466788899999999986543     


Q ss_pred             -cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcccc
Q 010291          277 -QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT  318 (513)
Q Consensus       277 -~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  318 (513)
                       .+..+.+.|+++.|++++.+++++++..+++++.+++.+...
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~  364 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL  364 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH
Confidence             345667889999999999999999999999999999876543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.4e-18  Score=154.05  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=151.5

Q ss_pred             CCChhHHHH-hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhH
Q 010291            2 EGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI   79 (513)
Q Consensus         2 ~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~   79 (513)
                      .|+++.++. +++++++.+|..|+.+|++++.+++..+..+.+.|+++.|+++|. +.++.++..++++|++++.+++..
T Consensus        57 ~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~  136 (264)
T d1xqra1          57 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG  136 (264)
T ss_dssp             TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhh
Confidence            488888875 788999999999999999999988999999999999999999997 568999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291           80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  159 (513)
Q Consensus        80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  159 (513)
                      +..+...|+++.|++++.+++..++..++++|.+++..++..+..+.+.|+++.|+.+++++++++++.++++|.+|+.+
T Consensus       137 ~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         137 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999976


Q ss_pred             cccc
Q 010291          160 MHNQ  163 (513)
Q Consensus       160 ~~~~  163 (513)
                      .+..
T Consensus       217 ~~~~  220 (264)
T d1xqra1         217 FPQG  220 (264)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=9.1e-10  Score=99.30  Aligned_cols=253  Identities=17%  Similarity=0.102  Sum_probs=178.9

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ..+.|+++|+++++.+|..|+.+|+.+..           ..+++.++++++++++.+|..|+.+|+.+....... ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-~~~   87 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-DNV   87 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-cch
Confidence            35678999999999999999999998753           135799999999999999999999999996542221 111


Q ss_pred             HhCCChHH-HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           84 LAAGALQP-VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        84 ~~~g~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                           ++. +..+++++++.++..++.+|.+++...+....     ..++.+...+.++++.++..++.++..+.     
T Consensus        88 -----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-----  152 (276)
T d1oyza_          88 -----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN-----  152 (276)
T ss_dssp             -----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             -----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcc-----
Confidence                 223 33456788999999999999999865543322     34678888888999999998888877653     


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  242 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (513)
                           ....++.+..++...+..+...+..++.................    +.      .............+.....
T Consensus       153 -----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~al~~~~~  217 (276)
T d1oyza_         153 -----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM----LQ------DKNEEVRIEAIIGLSYRKD  217 (276)
T ss_dssp             -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH----TT------CSCHHHHHHHHHHHHHTTC
T ss_pred             -----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhh----hh------hhhhhhhhhhccccchhhh
Confidence                 23456778888888888888888888877665433222211100    00      0111111122233344556


Q ss_pred             hhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHHHHH
Q 010291          243 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF  310 (513)
Q Consensus       243 ~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~  310 (513)
                      ..+++.|+..++  ++.++..++++|+.+.          +.+.++.|.+++.+ ++.+++..|..+|.
T Consensus       218 ~~~~~~L~~~l~--d~~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         218 KRVLSVLCDELK--KNTVYDDIIEAAGELG----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             GGGHHHHHHHHT--SSSCCHHHHHHHHHHC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhC--ChHHHHHHHHHHHHcC----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            778999999886  4579999999999875          24588999998876 67789888887763

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-10  Score=117.60  Aligned_cols=298  Identities=13%  Similarity=0.090  Sum_probs=198.8

Q ss_pred             ChhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .++.+..+++++++++|..|+..+..++..- ........-..+++.+...+.+.++.+|..++.++..++..   ....
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~---~~~~  358 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI---LGKD  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH---HCHH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc---cchh
Confidence            3566777778888888888888888887532 22233333345678888888889999999998888877632   1111


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  162 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  162 (513)
                      ......++.+..++.+++++++..+...+..+...-..  . -.....++.+...+++++..++..++.++..++..-..
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~  435 (588)
T d1b3ua_         359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV  435 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh
Confidence            12234688899999999999999998888777632211  1 11234678889999999999999999999998753211


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHHHH---
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLE---  238 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~~---  238 (513)
                        ........+.+..++.++...++..|+.+++.++..-..  .......++.+.....+.. ..+.....++..+.   
T Consensus       436 --~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~  511 (588)
T d1b3ua_         436 --EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC  511 (588)
T ss_dssp             --GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             --HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence              112223445577888888999999999999998752111  1112223333332111111 11111111222221   


Q ss_pred             --HHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291          239 --EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  313 (513)
Q Consensus       239 --~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  313 (513)
                        ......++|.++.+++++.+.||..++++|..+...-+..  .......+.|.+++++++.+||..|..++..|+
T Consensus       512 ~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence              2234568899999999999999999999999997543322  122345677888888999999999999988765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.2e-10  Score=115.72  Aligned_cols=298  Identities=14%  Similarity=0.087  Sum_probs=200.5

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      ++.+.++++++++.+|..|+.+++.++..-.   ........++.+..+++++++.+|..|+.++..++...+..   ..
T Consensus       166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~  239 (588)
T d1b3ua_         166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DL  239 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HH
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HH
Confidence            4556677788999999999999999987422   12223456777888888999999999999999997543221   12


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--  162 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--  162 (513)
                      ....++.+..++.+.++.++..++.+|.+++.....   ......+++.+..++++++++++..++..+..++..-..  
T Consensus       240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~  316 (588)
T d1b3ua_         240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            223688888999999999999999999998743221   233446788999999999999999999999999864322  


Q ss_pred             chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh-hhhhHHHHHHHHHHHHHH-
Q 010291          163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEK-  240 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~~-  240 (513)
                      .........++.+...+.+.++.++..++.++..++..-....  .....++.+...... ......-...++..+... 
T Consensus       317 ~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~  394 (588)
T d1b3ua_         317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhH--HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence            2223334567778888889999999988888877764211100  111122222211110 001111111111112111 


Q ss_pred             ----hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291          241 ----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  315 (513)
Q Consensus       241 ----~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  315 (513)
                          ....+++.+..++.+.++.+|..++.++..++..-..  ........+.+..++.++...+|..|+.++..++..
T Consensus       395 ~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence                2345677788888888999999999999988642111  112334567888889999999999999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-08  Score=108.71  Aligned_cols=273  Identities=15%  Similarity=0.101  Sum_probs=184.9

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL   84 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   84 (513)
                      +..|++-++++|+++|..|+..|.+......-....-....+++.++++|.+++++||..|+.+|+.++...++..  + 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H-
Confidence            5678888899999999999988887654221111111122368899999999999999999999999986644321  1 


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-----hHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~  158 (513)
                       ...++.|+..+.+++...+..+..+|..+...-+..     .........++.+...+.. .+..++..++.+|..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             235677788777888888888888887775322211     1111222344555555554 578899999999999875


Q ss_pred             ccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHH
Q 010291          159 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  238 (513)
Q Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  238 (513)
                      ....--.-.....++.++..+.+++..++..|+.+|+.++..-...                                  
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----------------------------------  206 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----------------------------------  206 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------------------------------------
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----------------------------------
Confidence            4432111112235666778888999999999999999997643210                                  


Q ss_pred             HHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          239 EKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       239 ~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                        .-..+++.++..+.. .+...+..++.+++.+++....+..-.-...++.+.+.+.+.++++|..+..++..+....+
T Consensus       207 --~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         207 --VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence              012345666666654 56677888889999887643322111124678999999999999999999999998876543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.5e-08  Score=102.78  Aligned_cols=305  Identities=13%  Similarity=0.067  Sum_probs=176.5

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +.+.+.++++++..|..|+.+++.++.+..+....... .+++.++..++++++.+|..++++|+.++.........-.-
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~  476 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL  476 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHT
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            34445667889999999999999999864443322222 35788889999999999999999999997532111111122


Q ss_pred             CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc---c
Q 010291           86 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH---N  162 (513)
Q Consensus        86 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~  162 (513)
                      ...++.++..+.+.++.++..|+++|.+++.......... -..+++.++..+...+...+..+..++..++..-.   .
T Consensus       477 ~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~  555 (888)
T d1qbkb_         477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN  555 (888)
T ss_dssp             TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG-HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcccc
Confidence            4577888888889999999999999999984322211111 12456778888888777777777777777763221   1


Q ss_pred             chhhHhcCChHHHHHHhcC--CCHHHHHHHHHHHHhccc--CcchHH---HHHhhcCcccccc-----------hhhhhh
Q 010291          163 QAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLAD--NEDNVA---DFIRVGGVQKLQD-----------GEFIVQ  224 (513)
Q Consensus       163 ~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~--~~~~~~---~~~~~g~i~~L~~-----------~~~~~~  224 (513)
                      +..+.+ ..++.+......  .+.......+.++..++.  ......   .+.. ..+..+..           ......
T Consensus       556 ~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~  633 (888)
T d1qbkb_         556 KPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEA  633 (888)
T ss_dssp             SHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred             chHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccc
Confidence            111111 223333333321  112222334455554432  111111   0000 00000000           000000


Q ss_pred             hhH---HHHHHHHHHHHH---------HhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCCchHHH
Q 010291          225 ATK---DCVAKTLKRLEE---------KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELL  290 (513)
Q Consensus       225 ~~~---~~~~~~~~~~~~---------~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L  290 (513)
                      ...   .+....+..+..         +....+++.+...+++.+++++..|..+++.++..  +.....+  ...++.+
T Consensus       634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l  711 (888)
T d1qbkb_         634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPIL  711 (888)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHH
Confidence            001   111111111111         12234677788888888999999999999988753  2222221  2356777


Q ss_pred             HhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          291 LGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       291 ~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      .+-+.+..+.++..++++++.++...
T Consensus       712 ~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         712 GTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            77777788889999999999998653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.2e-07  Score=84.90  Aligned_cols=228  Identities=14%  Similarity=0.061  Sum_probs=152.6

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291           44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  123 (513)
Q Consensus        44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  123 (513)
                      ....+.|+++|+++++.+|..|+.+|+.+..  +         .+++.++.+++++++.++..|+.+|..+...... ..
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-cc
Confidence            3457789999999999999999999988752  2         2578999999999999999999999998643222 11


Q ss_pred             HHHhcCChHHHH-HHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc
Q 010291          124 HIVQRGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  202 (513)
Q Consensus       124 ~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  202 (513)
                      .     .++.+. .+++++++.++..++.+|.+++......    ....++.+...+.+.++.++..++.+++.+.....
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~  156 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT  156 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHH
Confidence            1     122333 4567889999999999999998644322    12345677888888899999999998887654222


Q ss_pred             hHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeee
Q 010291          203 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI  282 (513)
Q Consensus       203 ~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~  282 (513)
                      . ..+...     +..   .......-..... ...........+.++..+.+.+..++..+..+++.+.          
T Consensus       157 ~-~~l~~l-----~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----------  216 (276)
T d1oyza_         157 I-PLLINL-----LKD---PNGDVRNWAAFAI-NINKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------  216 (276)
T ss_dssp             H-HHHHHH-----HTC---SSHHHHHHHHHHH-HHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------
T ss_pred             H-HHHHHh-----ccc---ccchhhhhHHHHH-Hhhhccccccchhhhhhhhhhhhhhhhhhccccchhh----------
Confidence            1 111110     000   0000000000111 1111223446667777788888889999999987653          


Q ss_pred             cCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291          283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  314 (513)
Q Consensus       283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  314 (513)
                      ....++.|++.+.+  +.++..++++|..+..
T Consensus       217 ~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         217 DKRVLSVLCDELKK--NTVYDDIIEAAGELGD  246 (276)
T ss_dssp             CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC
Confidence            24568888888874  5689999999998863

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-07  Score=90.90  Aligned_cols=274  Identities=12%  Similarity=0.012  Sum_probs=168.1

Q ss_pred             CChhHHHHhhcc--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChh
Q 010291            3 GGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         3 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      +.++.+++.+.+  .++..+..++.++..++.........-....+++.++..+.+  .+.+++..|+.++..+......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            346677777765  346777888888888875433322222223356777888774  4678999999999999865443


Q ss_pred             HHH-HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           79 IKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        79 ~~~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ... ........+.+..++.+++++++..++.+|..++...+......+.....+.+...+.+.+++++..++..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            211 1122235667777888899999999999999998665543222222233444556677888899999999998887


Q ss_pred             hccccchhhHhc---------------------CChHHHHHHhcC-------CCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291          158 QDMHNQAGIAHN---------------------GGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIR  209 (513)
Q Consensus       158 ~~~~~~~~~~~~---------------------~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~  209 (513)
                      ............                     ...+.+...+..       .+..++..+..++..             
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~-------------  353 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML-------------  353 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHH-------------
Confidence            532111000000                     001111111111       011222333333333             


Q ss_pred             hcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecC
Q 010291          210 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDG  284 (513)
Q Consensus       210 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~  284 (513)
                                                 +.......    +++.+...++++++.+|..|+.+|+.++.... ....-.-.
T Consensus       354 ---------------------------l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~  406 (458)
T d1ibrb_         354 ---------------------------LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI  406 (458)
T ss_dssp             ---------------------------HHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTT
T ss_pred             ---------------------------HHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHH
Confidence                                       32222222    34445556666888999999999999986432 11111224


Q ss_pred             CchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          285 GGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       285 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ..++.++..++++++.+|..|+++|.+++...
T Consensus       407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         407 QAMPTLIELMKDPSVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999998653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=6e-07  Score=83.67  Aligned_cols=300  Identities=11%  Similarity=0.122  Sum_probs=192.6

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291            7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus         7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      ++..++.+++.-....++..+..++..........-. ......+-.+...++.+.+..++.+|..+... +..|..+..
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~  204 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWL  204 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHT
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHH
Confidence            3444555566667777788888887643332221110 11222333343567888888999999999876 677777643


Q ss_pred             --CCChHHHHHhhcC-----------------CChHHHHHHHHHHHHhhcCCchhhHHHHhc--CChHHHHHHhCC-CCH
Q 010291           86 --AGALQPVIGLLSS-----------------CCSESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIEMLQS-PDV  143 (513)
Q Consensus        86 --~g~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~-~~~  143 (513)
                        ...++.++..|+.                 ....+.+.++.+++-|+. +++....+.+.  +.++.++.+++. +.+
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KE  283 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKE  283 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence              3356666666542                 124778999999999975 45556666554  348888888864 688


Q ss_pred             HHHHHHHHHHHHHhhcccc------chhhHhcCChHHHHHHhcCC---CHHHHHHHH-------HHHHhcccCcchHHHH
Q 010291          144 QLREMSAFALGRLAQDMHN------QAGIAHNGGLVPLLKLLDSK---NGSLQHNAA-------FALYGLADNEDNVADF  207 (513)
Q Consensus       144 ~~~~~a~~~L~~l~~~~~~------~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~-------~~L~~l~~~~~~~~~~  207 (513)
                      ++.+.++.++.|+......      ...++..+++ +++..|...   |+++....-       ..+..++.-++...++
T Consensus       284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev  362 (477)
T d1ho8a_         284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL  362 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999999865332      1223444444 445555443   455433211       1223333333343333


Q ss_pred             HhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH----------HhhcchhhhHHHHHhhccCC-CC
Q 010291          208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----------VAEKGVQRRVALALAHLCSP-DD  276 (513)
Q Consensus       208 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~----------~~~~~v~~~a~~aL~~l~~~-~~  276 (513)
                      . .|-+.-     ...+.....|..+..++. -.+..++..|+.+|+          +.|+.+..-||.=++.+++. |.
T Consensus       363 ~-Sg~L~W-----SP~H~se~FW~EN~~kf~-e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~  435 (477)
T d1ho8a_         363 D-SKLLCW-----SPPHVDNGFWSDNIDEFK-KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE  435 (477)
T ss_dssp             H-HTCCCC-----CGGGGCHHHHHHHSGGGS-SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             h-cCCCCC-----CCCcCChhHHHHHHHhhc-ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc
Confidence            2 232211     123333456666655543 234468999999997          35777788899999999975 66


Q ss_pred             cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          277 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       277 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      +|..+-+.|+=..++++|.+++++||.+|..++..+..+.
T Consensus       436 gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         436 SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            7888888888899999999999999999999999887664

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.5e-07  Score=99.33  Aligned_cols=294  Identities=14%  Similarity=0.104  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc
Q 010291           18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS   97 (513)
Q Consensus        18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~   97 (513)
                      .++..|..+|..++....+.   +. .-+++.+.+.+.+++...|+.|+.+|+.++.+..+.....+ ...++.++..++
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~---il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~  446 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLS  446 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSS---SH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhHhhhhHHH---HH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhcc
Confidence            35677777777776532211   11 01234455566688899999999999999866443211111 135778888899


Q ss_pred             CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHH
Q 010291           98 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK  177 (513)
Q Consensus        98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~  177 (513)
                      ++++.+|..++|+|+.++.........-.-...++.++..+.++++.++..|+++|.+++........-.-...++.++.
T Consensus       447 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~  526 (888)
T d1qbkb_         447 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF  526 (888)
T ss_dssp             SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            99999999999999998742211111122346788899999999999999999999999864332211111345666778


Q ss_pred             HhcCCCHHHHHHHHHHHHhcccC---cchHHHHHhhcCcccccc-------hhhhhhhhHHHHHHHHHHHHHH---hhhh
Q 010291          178 LLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQD-------GEFIVQATKDCVAKTLKRLEEK---IHGR  244 (513)
Q Consensus       178 ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~i~~L~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~  244 (513)
                      .+...+......+..++..++..   .-....+.+ ..++.+.+       ..........|.......+...   +...
T Consensus       527 ~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~  605 (888)
T d1qbkb_         527 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP  605 (888)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            88877777666666677666531   111111111 11111111       0000111112221111110000   0001


Q ss_pred             hHHHHHHHHHH-----------------hhcchhhhHHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchhhhH
Q 010291          245 VLNHLLYLMRV-----------------AEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDG  305 (513)
Q Consensus       245 ~l~~Lv~lL~~-----------------~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  305 (513)
                      +.+.++..+..                 .+.++...++.++..++..  ......+.....++.+...+.+.+++++..|
T Consensus       606 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a  685 (888)
T d1qbkb_         606 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS  685 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHH
Confidence            11222222211                 1233445566666666532  2222233345677888899999999999999


Q ss_pred             HHHHHHhhhccc
Q 010291          306 AVALFKLANKAT  317 (513)
Q Consensus       306 ~~~L~~l~~~~~  317 (513)
                      ..++..++....
T Consensus       686 ~~llgdl~~~~~  697 (888)
T d1qbkb_         686 FALLGDLTKACF  697 (888)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHHhhh
Confidence            999988887543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.47  E-value=8.4e-09  Score=78.63  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291           12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP   91 (513)
Q Consensus        12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   91 (513)
                      |+++++.+|..|+++|+.+..            ..++.|+..|.++++.+|..|+++|+++..  +         +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            456778888888888776532            357889999999999999999999987742  2         24788


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      |..++.++++.++..++++|+.+.  ++         +.++.|..+++++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999984  22         35778889999999999999988774

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.6e-05  Score=82.68  Aligned_cols=306  Identities=10%  Similarity=0.063  Sum_probs=182.2

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291            6 PPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEV   83 (513)
Q Consensus         6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~   83 (513)
                      ..+++.+.++++.+|..++.+++.++... +.+    .....++.|++.+.++ +..++..|+.+|..++.........+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~----~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHG----AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT----CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC----chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34566777888999999999999987531 110    0112466677777754 46688889999999985533211111


Q ss_pred             Hh--CCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhH-HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291           84 LA--AGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  158 (513)
Q Consensus        84 ~~--~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  158 (513)
                      ..  ...+..++..+.  ..+..++..+..++.++....+.... .......++.+...+++++++++..++.++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            10  012233333333  34578999999999998754332211 11223456778888999999999999999999986


Q ss_pred             ccccch-hhHhcCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH-HhhcCc----------------ccccch
Q 010291          159 DMHNQA-GIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGV----------------QKLQDG  219 (513)
Q Consensus       159 ~~~~~~-~~~~~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~i----------------~~L~~~  219 (513)
                      .....- .... ..+.. +.....+.++.++..++..+..++......... ......                +.+...
T Consensus       254 ~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~  332 (861)
T d2bpta1         254 KYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL  332 (861)
T ss_dssp             HHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            443321 1111 12333 345556778889999988888877533221111 111100                000000


Q ss_pred             h--------hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhhcchhhhHHHHHhhccCCCCc-ceeeecCCc
Q 010291          220 E--------FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDDQ-RTIFIDGGG  286 (513)
Q Consensus       220 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~----~~~~~v~~~a~~aL~~l~~~~~~-~~~l~~~~~  286 (513)
                      .        ............++..+.......+++.+...+.    +.++..+..++.+++.++..... ...-.-...
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~  412 (861)
T d2bpta1         333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA  412 (861)
T ss_dssp             TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            0        0001112223334444444445555665555444    36677888999999988765431 111111346


Q ss_pred             hHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291          287 LELLLGLLGSTNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       287 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ++.+.+.+.++++.+|..+++++..++...
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T d2bpta1         413 LPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHh
Confidence            788889999999999999999999987653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5e-06  Score=90.39  Aligned_cols=183  Identities=16%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291           90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  169 (513)
Q Consensus        90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  169 (513)
                      +.|...+.+.+..++..++.+|+.++..+++        ..++.|...+.++++.++..++.++..+..+......-.-.
T Consensus       931 ~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~ 1002 (1207)
T d1u6gc_         931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002 (1207)
T ss_dssp             HHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            3444445567788999999999999866554        36888999999999999999999999888654433222223


Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 010291          170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL  249 (513)
Q Consensus       170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  249 (513)
                      ..++.++..+.+++..++..|+.++..++.+...   ++.     +.                         -..++|.|
T Consensus      1003 ~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~---li~-----~~-------------------------l~~llp~l 1049 (1207)
T d1u6gc_        1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS---LIR-----DL-------------------------LDTVLPHL 1049 (1207)
T ss_dssp             HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGG---GTG-----GG-------------------------HHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH---HHH-----HH-------------------------HHHHHHHH
Confidence            4566778889999999999999999988764321   100     00                         01122322


Q ss_pred             HHHHHH------------------hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHH
Q 010291          250 LYLMRV------------------AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  311 (513)
Q Consensus       250 v~lL~~------------------~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  311 (513)
                      +....-                  ..-++|+.|..++..+......+.-+.  ..+..+..-+.+ +.+++.-+...|.+
T Consensus      1050 ~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~--~~~~~~~~gl~d-~~di~~~~~~~l~~ 1126 (1207)
T d1u6gc_        1050 YNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIF--EFLNHVEDGLKD-HYDIKMLTFLMLVR 1126 (1207)
T ss_dssp             HHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHH--HHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHH--HHHHHHHhcccc-hHHHHHHHHHHHHH
Confidence            221111                  123578888888887753322221111  134444444444 56899888888988


Q ss_pred             hhhcc
Q 010291          312 LANKA  316 (513)
Q Consensus       312 l~~~~  316 (513)
                      |+...
T Consensus      1127 l~~~~ 1131 (1207)
T d1u6gc_        1127 LSTLC 1131 (1207)
T ss_dssp             HHHSC
T ss_pred             HHHhC
Confidence            88753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.9e-06  Score=79.08  Aligned_cols=234  Identities=12%  Similarity=0.097  Sum_probs=149.9

Q ss_pred             hhHHHHhhcc--CCHHHHHHHHHHHHHhhccCchhHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            5 IPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         5 i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ++.++..+.+  .+..++..|+.++..+......... ........+.+..++.+++++++..++.+|..++...+..-.
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  252 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  252 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4556666654  4578999999999998864333221 122223456677778889999999999999999865543211


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh--------------------hHHHHhcCChHHHHHHhCC-
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC--------------------KVHIVQRGAVRPLIEMLQS-  140 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------~~~~~~~~~i~~L~~~l~~-  140 (513)
                      ..+.......+.....+.+.+++..++..+..++......                    .........++.+...+.. 
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  332 (458)
T d1ibrb_         253 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  332 (458)
T ss_dssp             TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcc
Confidence            1111122334455567788899999998888876321100                    0001111233444444432 


Q ss_pred             ------CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcc
Q 010291          141 ------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ  214 (513)
Q Consensus       141 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~  214 (513)
                            .+..++..+..++..++......  +. ...++.+.+.+.++++.++..++.+|+.++......       .+.
T Consensus       333 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~-------~~~  402 (458)
T d1ibrb_         333 DENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-------QLK  402 (458)
T ss_dssp             CSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-------TTC
T ss_pred             hhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHh-------HHH
Confidence                  23357888888888887544322  11 234556778888999999999999999988643210       000


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291          215 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  273 (513)
Q Consensus       215 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~  273 (513)
                      .                         .-..+++.++..++++++.||..|+++|+.++.
T Consensus       403 ~-------------------------~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         403 P-------------------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             T-------------------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             H-------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            0                         123478889999999999999999999999975

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.5e-06  Score=60.90  Aligned_cols=74  Identities=22%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             cCeeehhhHHHHhhcCHHHHHhccC--CCCCCCCCceecCCCCHHHHHHHHHHHhc-----C------ccccCHHHHHHH
Q 010291          353 EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYT-----G------SVDVTLDIAQDL  419 (513)
Q Consensus       353 ~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-----~------~~~~~~~~~~~l  419 (513)
                      +|..|.+.+.+ +..|+.++.|+.+  ++.++....|+|++++...++.+++|++.     +      ..+++.+.+.+|
T Consensus         9 Dg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eL   87 (96)
T d2c9wc1           9 DGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEL   87 (96)
T ss_dssp             TCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHH
T ss_pred             CCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHH
Confidence            67889999998 7799999999964  35666778999999999999999999962     1      223778899999


Q ss_pred             HHHHHHhc
Q 010291          420 LRAADQYL  427 (513)
Q Consensus       420 l~~A~~~~  427 (513)
                      +.+|+||+
T Consensus        88 i~AAnyLd   95 (96)
T d2c9wc1          88 LMAANFLD   95 (96)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHhhhc
Confidence            99999986

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.20  E-value=1.2e-06  Score=66.18  Aligned_cols=88  Identities=18%  Similarity=0.164  Sum_probs=75.0

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE   82 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   82 (513)
                      .+++.|++.|+++++.+|..|+++|+++..           .+.++.|..+|+++++.+|..|+++|+.+..  +     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--~-----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E-----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc--c-----
Confidence            467899999999999999999999987763           2357899999999999999999999998842  2     


Q ss_pred             HHhCCChHHHHHhhcCCChHHHHHHHHHHH
Q 010291           83 VLAAGALQPVIGLLSSCCSESQREAALLLG  112 (513)
Q Consensus        83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  112 (513)
                          +.++.|..+++++++.++..|+.+|.
T Consensus        84 ----~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 ----RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                24778889999999999999988774

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=9.2e-05  Score=68.72  Aligned_cols=224  Identities=15%  Similarity=0.156  Sum_probs=146.6

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhh
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS-----------------EDSAIHYEAVGVIGNLV   73 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~-----------------~~~~v~~~a~~~L~~l~   73 (513)
                      ++.+...+.-|+.++..+.. .++.|..+..  ...++.++..|+.                 .+..++..++.++|-++
T Consensus       175 ~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            55677788888999999987 6888888754  3456677766642                 12367889999999999


Q ss_pred             cCChhHHHHHHhC--CChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCch-----hhHHHHhcCChHHHHHHhCC---CC
Q 010291           74 HSSPNIKKEVLAA--GALQPVIGLLSS-CCSESQREAALLLGQFAATDSD-----CKVHIVQRGAVRPLIEMLQS---PD  142 (513)
Q Consensus        74 ~~~~~~~~~~~~~--g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~~l~~---~~  142 (513)
                      .+ +.....+.+.  +.++.++.++.. ....+.+-++.+|.|++.....     ....++..++++. +..|..   .|
T Consensus       254 F~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~D  331 (477)
T d1ho8a_         254 FN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSD  331 (477)
T ss_dssp             TS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSS
T ss_pred             cC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCC
Confidence            75 6666666665  347888888864 5688999999999999865332     1233455555554 444543   37


Q ss_pred             HHHHHHHHHHHHHHhh----------------------ccccc-hhhH--------hc--CChHHHHHHhc---------
Q 010291          143 VQLREMSAFALGRLAQ----------------------DMHNQ-AGIA--------HN--GGLVPLLKLLD---------  180 (513)
Q Consensus       143 ~~~~~~a~~~L~~l~~----------------------~~~~~-~~~~--------~~--~~i~~L~~ll~---------  180 (513)
                      +++.+..-..-..|..                      .+..+ ..+-        +.  ..+..|+++|.         
T Consensus       332 edl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         332 EELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            7765443222111111                      11111 1121        11  12566888885         


Q ss_pred             -CCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 010291          181 -SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK  258 (513)
Q Consensus       181 -~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~  258 (513)
                       +.|+.+...||.-++.+++ +|..+..+.+.                                 |+=..++.+|.++|+
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l---------------------------------g~K~~vM~Lm~h~d~  458 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKT---------------------------------GGKADIMELLNHSDS  458 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH---------------------------------SHHHHHHHHTSCSSH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHc---------------------------------CcHHHHHHHhcCCCH
Confidence             2357788889999999998 55554444333                                 345667889999999


Q ss_pred             chhhhHHHHHhhcc
Q 010291          259 GVQRRVALALAHLC  272 (513)
Q Consensus       259 ~v~~~a~~aL~~l~  272 (513)
                      +||.+|+.++..+.
T Consensus       459 ~Vr~eAL~avQklm  472 (477)
T d1ho8a_         459 RVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987663

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=1.2e-05  Score=58.43  Aligned_cols=79  Identities=22%  Similarity=0.412  Sum_probs=63.9

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcC--------------ccccC
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTG--------------SVDVT  412 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~--------------~~~~~  412 (513)
                      |++.. +|..|.+.+.+ +..|+.++.|+.+.+.++ +..|++++++...++.+++|++.-              ..+++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd   83 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCC
Confidence            44444 67889999998 569999999998765554 467999999999999999999721              23467


Q ss_pred             HHHHHHHHHHHHHhcH
Q 010291          413 LDIAQDLLRAADQYLL  428 (513)
Q Consensus       413 ~~~~~~ll~~A~~~~~  428 (513)
                      .+.+.+|+.||+|+++
T Consensus        84 ~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            7889999999999974

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.3e-05  Score=78.20  Aligned_cols=295  Identities=11%  Similarity=-0.000  Sum_probs=167.4

Q ss_pred             CChhHHHHhhccCC--HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChh
Q 010291            3 GGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPN   78 (513)
Q Consensus         3 g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~   78 (513)
                      +.++.|++.+.+++  +.++..++.+|..++..-......-.-..+++.+++.+.+  .+..++..++.++.+.......
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            34677777776543  6788889999999876322111111112457778888764  4578999999999888754332


Q ss_pred             HHH-HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291           79 IKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  157 (513)
Q Consensus        79 ~~~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  157 (513)
                      ... .....-.++.+...+.+++++++..++.+|..++...++...........+.+...+.+.+++++..+...+..++
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            211 1111124566777788889999999999999998766655444444455666777788888889888888888776


Q ss_pred             hccccchhhHhcCChHHHHHHhcC--CC----HHHHHHHHHHHHhcc-cCcchHHHHHhhcCcccccchhhhhhhhHHHH
Q 010291          158 QDMHNQAGIAHNGGLVPLLKLLDS--KN----GSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCV  230 (513)
Q Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~--~~----~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~  230 (513)
                      ..........    ..........  ..    ..........+.... ...+.               ............
T Consensus       288 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------------~~~~~~~~~~~a  348 (876)
T d1qgra_         288 DEEMDLAIEA----SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN---------------DDDDDWNPCKAA  348 (876)
T ss_dssp             HHHHHHHHHH----HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS---------------CCTTCCCHHHHH
T ss_pred             HHHHHHHHHh----hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccc---------------cccccchHHHHH
Confidence            4322110000    0000000000  00    001111111111110 00000               000001111222


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHH----HhhcchhhhHHHHHhhccCCCCcc-eeeecCCchHHHHhhhcCCCcchhhhH
Q 010291          231 AKTLKRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDDQR-TIFIDGGGLELLLGLLGSTNPKQQLDG  305 (513)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~Lv~lL~----~~~~~v~~~a~~aL~~l~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a  305 (513)
                      ..++..+.......+++.++..+.    ++++..+..++.+++.+....... ..-.-...++.+...+.++++.++..+
T Consensus       349 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a  428 (876)
T d1qgra_         349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA  428 (876)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence            223333333334444555555444    467778888999998887654321 111123467888889999999999999


Q ss_pred             HHHHHHhhhcc
Q 010291          306 AVALFKLANKA  316 (513)
Q Consensus       306 ~~~L~~l~~~~  316 (513)
                      ++++..++...
T Consensus       429 ~~~l~~~~~~~  439 (876)
T d1qgra_         429 AWTVGRICELL  439 (876)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99999988653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=5e-05  Score=78.74  Aligned_cols=301  Identities=12%  Similarity=0.051  Sum_probs=160.5

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291           10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL   89 (513)
Q Consensus        10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   89 (513)
                      ..+.++++..+..|+.+++.++.+.......-.-...++.+++.+.++++.+|..++++++.++.....   .+.....+
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~  452 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHL  452 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhh
Confidence            445677889999999999999875433322222234688899999999999999999999999753221   11112233


Q ss_pred             HHHHHhh---cCCChHHHHHHHHHHHHhhcCCchhh---HHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhccc
Q 010291           90 QPVIGLL---SSCCSESQREAALLLGQFAATDSDCK---VHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        90 ~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~  161 (513)
                      +.++..+   ...++.+...+++++.+++....+..   ..-.....+..++.....  .+..++..+..++..+.....
T Consensus       453 ~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~  532 (861)
T d2bpta1         453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT  532 (861)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence            4443332   23567788888888887763211100   000111234455555543  355688888888888875443


Q ss_pred             cchh--hHh--cCChHHHHHHhcCCC-----------HHHHHHHHHHHHhcccC-cchHHHHHhhcCcccccchhh--hh
Q 010291          162 NQAG--IAH--NGGLVPLLKLLDSKN-----------GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEF--IV  223 (513)
Q Consensus       162 ~~~~--~~~--~~~i~~L~~ll~~~~-----------~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~--~~  223 (513)
                      ..-.  +..  ....+.+...+....           ..++..+..++..+... ......+. ...+..+.....  ..
T Consensus       533 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~  611 (861)
T d2bpta1         533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDS  611 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcccCCc
Confidence            3211  110  111112222222211           12233333344433321 11100000 000111111000  11


Q ss_pred             hhhHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhh
Q 010291          224 QATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLL  294 (513)
Q Consensus       224 ~~~~~~~~~~~~~~~~~-------~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll  294 (513)
                      ......+..++..+...       +-..+++.++..+++.++.++..|+.+++.++..-.  ....+  ...++.|++.+
T Consensus       612 ~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~--~~i~~~L~~~l  689 (861)
T d2bpta1         612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMI  689 (861)
T ss_dssp             GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhH--HHHHHHHHHHh
Confidence            11122222222222211       123478888888888999999999999999875322  11111  23567777888


Q ss_pred             cC--CCcchhhhHHHHHHHhhhcc
Q 010291          295 GS--TNPKQQLDGAVALFKLANKA  316 (513)
Q Consensus       295 ~~--~~~~v~~~a~~~L~~l~~~~  316 (513)
                      ++  .++.++..+..++..++...
T Consensus       690 ~~~~~~~~~k~~~~~~l~~i~~~~  713 (861)
T d2bpta1         690 SNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            65  45678888889998887653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00094  Score=68.96  Aligned_cols=275  Identities=14%  Similarity=0.104  Sum_probs=167.2

Q ss_pred             hhHHHHhhcc--CCHHHHHHHHHHHHHhhccCchhHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291            5 IPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK   81 (513)
Q Consensus         5 i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   81 (513)
                      ++.+++.+.+  ++..++..|+.++.+.......... .....-+++.+...+.+++++++..++.+|..++...+..-.
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~  253 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4566666654  3568899999988887753322211 111122456677777888999999999999999876555433


Q ss_pred             HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh--------------------HHHHhcCChHHHHHHhCC-
Q 010291           82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--------------------VHIVQRGAVRPLIEMLQS-  140 (513)
Q Consensus        82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--------------------~~~~~~~~i~~L~~~l~~-  140 (513)
                      ..........+.....+...+++..+...+..++.......                    ........++.+...+.. 
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  333 (876)
T d1qgra_         254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence            33333445556666777788888888777776653211100                    001111233444444432 


Q ss_pred             ------CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcc
Q 010291          141 ------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ  214 (513)
Q Consensus       141 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~  214 (513)
                            ++..++..+..++..++......  +. ...++.+.+.+.+++...+..++.+++.+........ +       
T Consensus       334 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~-~-------  402 (876)
T d1qgra_         334 DENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ-L-------  402 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH-H-------
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhhhh--hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHH-H-------
Confidence                  12247777888887777533221  11 1234446667778888888888888888775432211 0       


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCc----hHHH
Q 010291          215 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG----LELL  290 (513)
Q Consensus       215 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~----i~~L  290 (513)
                                              .-....+++.+...+.++++.++..++++++.++..-...  ......    ++.+
T Consensus       403 ------------------------~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~~~~~l  456 (876)
T d1qgra_         403 ------------------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAPLLQCL  456 (876)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG--TSSTTTHHHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh--hhhHHHhhhHHHHH
Confidence                                    0012346788888899999999999999999997532211  111222    3444


Q ss_pred             HhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291          291 LGLLGSTNPKQQLDGAVALFKLANKAT  317 (513)
Q Consensus       291 ~~ll~~~~~~v~~~a~~~L~~l~~~~~  317 (513)
                      ...+. +++.++..+++++.++.....
T Consensus       457 ~~~l~-~~~~v~~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         457 IEGLS-AEPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHTT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence            44443 477889999999999876544

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=2.1e-05  Score=57.69  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             EEEEecCeeehhhHHHHhhcCH-HHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHH-HHHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDLLRAADQ  425 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~ll~~A~~  425 (513)
                      |++.|||+.|.+.+..|..... +|..++...+.....+.+-++. ++..|+.+|+|+.+|.+.++.+. ...++.-|++
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiDR-dp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~f   80 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDR-DPDIFRHILNFYRTGKLHYPRHECISAYDEELAF   80 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEECS-CTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEeC-CHHHHHHHHHHHhcCccccCCCccHHHHHHHHHH
Confidence            6789999999999999986543 4444444444334455666654 99999999999999998866543 6778888999


Q ss_pred             hcHHHH--HHHHHHHHH
Q 010291          426 YLLEGL--KRLCEYTIA  440 (513)
Q Consensus       426 ~~~~~l--~~~c~~~l~  440 (513)
                      |+|+.+  ...|.+.+.
T Consensus        81 ygi~~~~l~~cc~~~~~   97 (105)
T d1nn7a_          81 FGLIPEIIGDCCYEEYK   97 (105)
T ss_dssp             HTCCSCCBCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            999763  244555543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.011  Score=51.05  Aligned_cols=198  Identities=15%  Similarity=0.175  Sum_probs=148.9

Q ss_pred             CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhH----HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh
Q 010291            3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP   77 (513)
Q Consensus         3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~   77 (513)
                      +.+..|+..|..-+-+.|..++.+..++.+...+.+    ..+...  -+.+..++. -+++++-..+-..|+..... +
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREcik~-e  145 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECIRH-E  145 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHHTS-H
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHHhh-H
Confidence            445667777777788899999999999987655444    233321  223333333 24666767776777777766 7


Q ss_pred             hHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291           78 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFALG  154 (513)
Q Consensus        78 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~L~  154 (513)
                      ...+.+.....+..+.+.+..++.++...|..++..+....+........   ..+...+-+++.+++--++..++..|+
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            77788888888999999999999999999999999988666554444443   235666778999999999999999999


Q ss_pred             HHhhccccchhh----HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch
Q 010291          155 RLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  203 (513)
Q Consensus       155 ~l~~~~~~~~~~----~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  203 (513)
                      .+-.+..+...+    .+...+..++.+|++.+..++-.|..++--+..++..
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999888875543    3345677899999999999999999998888776654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0025  Score=55.24  Aligned_cols=204  Identities=12%  Similarity=0.124  Sum_probs=152.5

Q ss_pred             HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh----HHHHh-cCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291           81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR  155 (513)
Q Consensus        81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~  155 (513)
                      +.+...+.+..|+..|..-+.+.+..++.+..++.+.....+    +.+.. ..++..|+..-  +++++.-.+-..|+.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHH
Confidence            345556788889999998999999999999999986655443    33332 23344444433  356677788889999


Q ss_pred             HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291          156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  234 (513)
Q Consensus       156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  234 (513)
                      +.+...-.+.+.....+..+.+++..++-++...|..++..+- .++....+++...                       
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~N-----------------------  197 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-----------------------  197 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHh-----------------------
Confidence            9998888888999899999999999999999999988888764 4554444444321                       


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcce----eeecCCchHHHHhhhcCCCcchhhhHHHHHH
Q 010291          235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT----IFIDGGGLELLLGLLGSTNPKQQLDGAVALF  310 (513)
Q Consensus       235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~----~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  310 (513)
                             -..++...-.+|.+++.-.|..++..|+.+..+..+..    .+-+..-+..++.+|.+++..+|.+|-.+..
T Consensus       198 -------yd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         198 -------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             -------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence                   12355666788889999999999999999976655432    3444455788999999999999999998887


Q ss_pred             Hhhhcc
Q 010291          311 KLANKA  316 (513)
Q Consensus       311 ~l~~~~  316 (513)
                      -+..++
T Consensus       271 vFVANp  276 (330)
T d1upka_         271 VFVANP  276 (330)
T ss_dssp             HHHHCS
T ss_pred             hhhcCC
Confidence            777653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.00  E-value=0.00088  Score=56.72  Aligned_cols=106  Identities=20%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHH-----Hhhcc-CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH-----HHHhh
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALR-----TLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV-----IGNLV   73 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~-----~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~-----L~~l~   73 (513)
                      +..|..+++++++.||..|+..|.     .+..+ +.+.+......-..+.|..++.++++.||..++..     |..+.
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~  147 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM  147 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence            556778888899999988886542     22222 23444444444445667777778888888777653     33333


Q ss_pred             cC-ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHH
Q 010291           74 HS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL  110 (513)
Q Consensus        74 ~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  110 (513)
                      .+ ++..|..+...-..+.|..++++.++.++..++..
T Consensus       148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            32 23455555555556667777777777777766654

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.93  E-value=0.00015  Score=52.80  Aligned_cols=88  Identities=14%  Similarity=0.171  Sum_probs=65.0

Q ss_pred             cEEEEecCeeehhhHHHHhhcC-HHHHHhccCCCC-CCCCCceecCCCCHHHHHHHHHHHhcCccccCHH-HHHHHHHHH
Q 010291          347 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR-EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA  423 (513)
Q Consensus       347 Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A  423 (513)
                      -|.+.|||+.|.+.+..|.... .+|..++.+.+. ......+-+ |=+|+.|+.+|+|+.+|.+..+.+ ....++.-|
T Consensus         3 rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea   81 (103)
T d3kvta_           3 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   81 (103)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHH
Confidence            3788999999999999998654 356656654332 223345666 469999999999999999887654 366788899


Q ss_pred             HHhcHHH-HHHHH
Q 010291          424 DQYLLEG-LKRLC  435 (513)
Q Consensus       424 ~~~~~~~-l~~~c  435 (513)
                      ++|+|+. +.+.|
T Consensus        82 ~yygi~~~~l~~C   94 (103)
T d3kvta_          82 EFWGLDSNQVEPC   94 (103)
T ss_dssp             HHHTCCGGGBCGG
T ss_pred             HHcCCCHHHHHHH
Confidence            9999964 44444

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.62  E-value=0.00048  Score=49.57  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             EEEEecCeeehhhHHHHhhc-CHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcC-ccccCHH-HHHHHHHHH
Q 010291          348 VTFLVEGRRFYAHRICLLAS-SDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTG-SVDVTLD-IAQDLLRAA  423 (513)
Q Consensus       348 v~~~~~~~~~~~h~~il~~~-s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~-~~~~~~~-~~~~ll~~A  423 (513)
                      |.+.|||+.|.+.+..|... +.+|..|++.. +.......+-++. +++.|+.+|+|+-+| .+..+.+ ....+..-|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiDR-dp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea   81 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDR-NRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECS-CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEec-CHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHH
Confidence            78899999999999999874 55776666533 2234445677754 999999999999885 5544433 367888999


Q ss_pred             HHhcHHH
Q 010291          424 DQYLLEG  430 (513)
Q Consensus       424 ~~~~~~~  430 (513)
                      ++|+|+.
T Consensus        82 ~y~gi~~   88 (100)
T d1t1da_          82 KFYELGE   88 (100)
T ss_dssp             HHTTCCH
T ss_pred             HHcCCCH
Confidence            9999876

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.52  E-value=0.0046  Score=52.15  Aligned_cols=125  Identities=15%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH-----HHhhcCC-hhHHHHHH
Q 010291           11 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI-----GNLVHSS-PNIKKEVL   84 (513)
Q Consensus        11 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L-----~~l~~~~-~~~~~~~~   84 (513)
                      +|.++..++|..|++.                  -.+..|..++++++++||..|+..|     ..+..+. ...|....
T Consensus        50 ~l~~p~~e~Ra~Aa~~------------------a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa  111 (233)
T d1lrva_          50 YLADPFWERRAIAVRY------------------SPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVA  111 (233)
T ss_dssp             GTTCSSHHHHHHHHTT------------------SCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHhc------------------CCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHH
Confidence            4566677777655531                  1233444455555555555554332     1222211 12233333


Q ss_pred             hCCChHHHHHhhcCCChHHHHHHHHH-----HHHhhc-CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291           85 AAGALQPVIGLLSSCCSESQREAALL-----LGQFAA-TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL  153 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~~~~~~~~a~~~-----L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L  153 (513)
                      ..-..+.|..++.++++.++..++..     |..+.. .+++.+..+...-..+.|..+++++++.++..++..|
T Consensus       112 ~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         112 DRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             HHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             hccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence            32234556666777777777666543     222222 2233334444444567778888888999998887543

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0067  Score=40.31  Aligned_cols=59  Identities=19%  Similarity=0.321  Sum_probs=42.3

Q ss_pred             EEEEe-cCeeehhhHHHHhhcCHHHHHhccCC----CCCCCCCceecCCCCHHHHHHHHHHHhcC
Q 010291          348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTG  407 (513)
Q Consensus       348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~  407 (513)
                      |++.. +|..|.+.+.+. ..|...+.|+...    ..+.....|++++++...++.+++|++.-
T Consensus         3 I~L~SsDg~~F~v~~~~a-~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H   66 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKIA-ERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH   66 (72)
T ss_dssp             EEEECTTSCEEEEEHHHH-TTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCCEEEecHHHH-HHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHc
Confidence            44444 678899999854 5999999999642    22334457999999999999999999853

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.012  Score=37.42  Aligned_cols=49  Identities=12%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 010291          353 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT  406 (513)
Q Consensus       353 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~  406 (513)
                      +|..|.+.+. .+..|...+.|+.+.    ....|++++++...++.+++|++.
T Consensus         9 Dg~~f~v~~~-~a~~S~tI~~ml~~~----~~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           9 DGEIFEVDVE-IAKQSVTIKTMLEDL----GMDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             TSCEEEEEGG-GGGTCHHHHHHHHHT----CCSSEECTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEecHH-HHHHhHHHHHHHhcC----CCCCcccCCcCHHHHHHHHHHHHH
Confidence            5678888888 455999999999642    234799999999999999999984

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.03  Score=34.53  Aligned_cols=41  Identities=22%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             ccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHH
Q 010291          410 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS  450 (513)
Q Consensus       410 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~  450 (513)
                      ++..+.+.+++.+|+++++++|...|.+.+...+...+.-.
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~ee   49 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE   49 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHH
Confidence            45678899999999999999999999999987765444333

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=1.7  Score=38.28  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=108.8

Q ss_pred             HHHhhccCC-HHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhc
Q 010291            8 LVELLEFTD-TKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVH   74 (513)
Q Consensus         8 Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~~L~~l~~   74 (513)
                      -++.|++.- ..-....+..|.--.+.++ .....+ ..+|+..|+.+|..           .+......++.||..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            355555543 2222333444432233333 344445 55678888887741           124577789999999987


Q ss_pred             CChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc--hhhH----------HHHhcCChHHHHHHhCCC-
Q 010291           75 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKV----------HIVQRGAVRPLIEMLQSP-  141 (513)
Q Consensus        75 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~----------~~~~~~~i~~L~~~l~~~-  141 (513)
                      ........+-..+++..++..+.++...++..|...|..+|...+  ....          ..-+.+-...+++.++.+ 
T Consensus        86 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~  165 (343)
T d2bnxa1          86 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  165 (343)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred             cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc
Confidence            655555555566899999999999999999999999999985422  1111          123456678888888765 


Q ss_pred             CHHHHHHHHHHHHHHhhcccc-------chhhHhcCChHHHHHHhcCC
Q 010291          142 DVQLREMSAFALGRLAQDMHN-------QAGIAHNGGLVPLLKLLDSK  182 (513)
Q Consensus       142 ~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~~i~~L~~ll~~~  182 (513)
                      +.+.+..++..+..+..+.++       |..+...| +..++.-+...
T Consensus       166 ~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~G-l~~il~~l~~~  212 (343)
T d2bnxa1         166 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREI  212 (343)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCC-hHHHHHHHHcc
Confidence            677887888777777766554       23344444 44555555543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.94  E-value=0.19  Score=44.55  Aligned_cols=234  Identities=15%  Similarity=0.164  Sum_probs=119.4

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh----CC---C
Q 010291           16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA----AG---A   88 (513)
Q Consensus        16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g---~   88 (513)
                      .++++...-..+..++..+.+....=.- .-.-.|+++|+.-+.+-......   . ..+.+..|..+.+    .|   .
T Consensus        15 ~~~~~~~~~~~l~~L~~~~~~~v~~~~~-~kF~~Lv~~lR~~~~e~l~~v~~---~-~~~~~~~r~~~lDal~~~GT~~a   89 (336)
T d1lsha1          15 GKNLESEIHTVLKHLVENNQLSVHEDAP-AKFLRLTAFLRNVDAGVLQSIWH---K-LHQQKDYRRWILDAVPAMATSEA   89 (336)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSSSCCTTHH-HHHHHHHHHHTTSCHHHHHHHHH---H-HTTSHHHHHHHHHHHHHHCSHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCcchH-HHHHHHHHHHHCCCHHHHHHHHH---H-HhcChhHHHHHHHHHHHhCCHHH
Confidence            4455566667778776643221110000 11335667777555443333221   1 1233444444432    33   4


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----CCHHHHHHHHHHHHHHhhccccch
Q 010291           89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQA  164 (513)
Q Consensus        89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~~~~~~~  164 (513)
                      +..+.+++.+......+ +...+..+.........      .+..+..++++    .++.++..+.-++++|....-...
T Consensus        90 ~~~i~~~I~~~~ls~~e-a~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~  162 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT  162 (336)
T ss_dssp             HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHHhccCCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCC
Confidence            55667777665543332 23334444422222121      35566777765    477888888888888874211110


Q ss_pred             hhHhcCChHHHH----HHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291          165 GIAHNGGLVPLL----KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  240 (513)
Q Consensus       165 ~~~~~~~i~~L~----~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  240 (513)
                      .-.....++.+.    +....++.+-+..++.+|+|+. .+.                                      
T Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~p~--------------------------------------  203 (336)
T d1lsha1         163 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-QPN--------------------------------------  203 (336)
T ss_dssp             SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CGG--------------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-CHh--------------------------------------
Confidence            001112233333    3344556565666778888865 232                                      


Q ss_pred             hhhhhHHHHHHHHHH-------hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC--CCcchhhhHHHHHHH
Q 010291          241 IHGRVLNHLLYLMRV-------AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFK  311 (513)
Q Consensus       241 ~~~~~l~~Lv~lL~~-------~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~  311 (513)
                          .++.+..++..       .+..+|..|.+++.+++...+.       .+.+.+..+..+  .++++|..|..+|..
T Consensus       204 ----~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         204 ----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             ----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcH-------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence                23444444433       1345889999999888653221       134556666654  567777777666644

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.06  Score=35.06  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=34.1

Q ss_pred             ccCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCC---hhhHHHHH
Q 010291          410 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS---LENVSSMY  452 (513)
Q Consensus       410 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~n~~~~~  452 (513)
                      ....+.+.+++.+|+|+++++|...|.+.+...+.   ++....++
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f   55 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTF   55 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHh
Confidence            35678999999999999999999999999977654   44444443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.27  E-value=2  Score=37.58  Aligned_cols=120  Identities=14%  Similarity=0.170  Sum_probs=81.6

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291           13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA   85 (513)
Q Consensus        13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   85 (513)
                      +.++.+.+..++++|+|+..  +         +.++.+..++.+       .+..+|..|+++|.+++...+..      
T Consensus       182 ~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~------  244 (336)
T d1lsha1         182 DRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK------  244 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH------
T ss_pred             cccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH------
Confidence            45666677778888888864  2         357778877753       25689999999999998765432      


Q ss_pred             CCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccc
Q 010291           86 AGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH  161 (513)
Q Consensus        86 ~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~  161 (513)
                        +.+.+..++.+  .++++|-.|...|...   .|..       ..+..+...+. +++.+|.......|.+++....
T Consensus       245 --v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         245 --VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             --HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             --HHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence              22344555443  5688888887777553   2321       13456666664 4688999999999999986443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.31  E-value=0.75  Score=46.98  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=95.2

Q ss_pred             hhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcC------
Q 010291            5 IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHS------   75 (513)
Q Consensus         5 i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~------   75 (513)
                      ++.+.++|. +.+++.+..|=..|..+.. +|         |....|++.+.++  +..+|..|+-.|.|....      
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~-~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLET-QD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHT-ST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            466777774 5678889999999988865 33         5677788877743  467899998888877642      


Q ss_pred             -----ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHH
Q 010291           76 -----SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA  150 (513)
Q Consensus        76 -----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~  150 (513)
                           +++.|..+     -..++..+.+.+..++...+.++..++..+-+...    .+.++.+++.++++++..+..++
T Consensus        74 ~~~~i~~e~k~~I-----k~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W----p~ll~~l~~~l~s~~~~~~~~~L  144 (959)
T d1wa5c_          74 GNHLLPANNVELI-----KKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW----PTLLSDLASRLSNDDMVTNKGVL  144 (959)
T ss_dssp             SCBSSCHHHHHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHTTCCSSCTTHHHHHH
T ss_pred             ccCCCCHHHHHHH-----HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc----HHHHHHHHHHhCCCCHHHHHHHH
Confidence                 12222222     23455566667888999999999998854321111    35678888888888888888888


Q ss_pred             HHHHHHhhc
Q 010291          151 FALGRLAQD  159 (513)
Q Consensus       151 ~~L~~l~~~  159 (513)
                      .+|..+++.
T Consensus       145 ~~l~~i~k~  153 (959)
T d1wa5c_         145 TVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHH
Confidence            888888753

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.90  E-value=4.6  Score=35.25  Aligned_cols=130  Identities=11%  Similarity=0.175  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--hhHHH----------HHH
Q 010291           17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS--PNIKK----------EVL   84 (513)
Q Consensus        17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~----------~~~   84 (513)
                      ...+..+++||..+..........+...+++..+...|.++++.++..|+.+|..+|..+  +....          ...
T Consensus        70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~  149 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  149 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence            557888999999999744445555666788999999999999999999999999998532  12212          222


Q ss_pred             hCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchh------hHHHHhcCChHHHHHHhCC-CCHHHHH
Q 010291           85 AAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDC------KVHIVQRGAVRPLIEMLQS-PDVQLRE  147 (513)
Q Consensus        85 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i~~L~~~l~~-~~~~~~~  147 (513)
                      +.+-...++..+... +.+.+..++..+..+..+.+..      +..+...|+.+ ++..++. .++.+..
T Consensus       150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDMKV  219 (343)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHHHH
T ss_pred             CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHccCChHHHH
Confidence            345667778777654 4677777777777777554432      33445566555 4445544 4555443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.13  E-value=1.5  Score=44.56  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=92.2

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcCC-----
Q 010291           47 LPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATD-----  118 (513)
Q Consensus        47 i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-----  118 (513)
                      ++.+.++|. +.+++.|+.|-.-|..+..+ +         |....|+.++.+.  +..+|..|+-.|.|.....     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ-D---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-T---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-C---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            456777777 56888999998888887544 3         4567777777654  4578888998888876321     


Q ss_pred             -----chhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 010291          119 -----SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA  193 (513)
Q Consensus       119 -----~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  193 (513)
                           ++.....+    -..++..+.+++..++...+.++..++..+.....   .+.++.+.+.+.+++......++.+
T Consensus        74 ~~~~i~~e~k~~I----k~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W---p~ll~~l~~~l~s~~~~~~~~~L~~  146 (959)
T d1wa5c_          74 GNHLLPANNVELI----KKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW---PTLLSDLASRLSNDDMVTNKGVLTV  146 (959)
T ss_dssp             SCBSSCHHHHHHH----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHTTCCSSCTTHHHHHHHH
T ss_pred             ccCCCCHHHHHHH----HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc---HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 11111112    23456666667888999999999999864322111   2456678888888887777788888


Q ss_pred             HHhccc
Q 010291          194 LYGLAD  199 (513)
Q Consensus       194 L~~l~~  199 (513)
                      +..++.
T Consensus       147 l~~i~k  152 (959)
T d1wa5c_         147 AHSIFK  152 (959)
T ss_dssp             HHHHHG
T ss_pred             HHHHHH
Confidence            877764

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=1.9  Score=32.45  Aligned_cols=72  Identities=10%  Similarity=0.045  Sum_probs=57.8

Q ss_pred             hhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC
Q 010291            5 IPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSS   76 (513)
Q Consensus         5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~~   76 (513)
                      +..|..-|+++++.++..|+..|-.+..+ .+.....+...+++..|+.++..      .+..|+..++..+..-+...
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            44566667889999999999999999886 47778888888899999998862      46789999998887766443